Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007891
(1213 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092535.1| hypothetical protein LOC534664 [Bos taurus]. 428 e-120
>ref|NP_001092535.1| hypothetical protein LOC534664 [Bos taurus].
Length = 453
Score = 428 bits (1101), Expect = e-120
Identities = 231/349 (66%), Positives = 247/349 (70%)
Frame = +3
Query: 87 MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 266
MAE A LVWLRGP FGCKA+ S CS+RDFI RHC+DQVVP+E FFVKCNG LVN SD
Sbjct: 1 MAETAALVWLRGPGFGCKAVWCGSAPCSIRDFIRRHCEDQVVPVECFFVKCNGSLVNTSD 60
Query: 267 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 446
TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120
Query: 447 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 626
WV QRKL EPRHCF+SPDYQQQCHEMAERLEDSVLKGMQAASS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLVEPRHCFSSPDYQQQCHEMAERLEDSVLKGMQAASS 180
Query: 627 KVVSAEIGEHRKRPYKSKTDRGASAGKRKCFWLGMDGLETXXXXXXXXXXXXXXXXXXXX 806
K+VSAEIGE RKRP KSKTD GASAGKRKCFWLGM+GL T
Sbjct: 181 KMVSAEIGESRKRPNKSKTDGGASAGKRKCFWLGMEGLGTTEGSSSENSDNDSEEAPGTS 240
Query: 807 XXXXXXXXXXXDGVAMAAKLPSSSQQARVLVSTDPRSSEKLPTPVTDSGEGISEDLCAEL 986
DGV MAA++PSSSQQARVL +TD RS EKL +P+TDSG ISEDL AEL
Sbjct: 241 GMSFHVSQNGCDGVDMAAEIPSSSQQARVL-NTDCRSPEKLQSPLTDSGNSISEDLHAEL 299
Query: 987 GEASTEEEHVERKTAAXXXXXXXXXXXXXXXXXXXXAAGVGVNKEQETQ 1133
GE T +E++ERK A AAG G N EQET+
Sbjct: 300 GETPT-QEYMERKRAVETENTREKKEAEGREPLEKEAAGGGQNTEQETK 347
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,710,542
Number of extensions: 1187655
Number of successful extensions: 4880
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4864
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,207,134
Effective search space: 4247933066
Effective search space used: 4247933066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007891
(1213 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537233.2| PREDICTED: similar to CG5986-PA [Canis familiar... 352 4e-97
>ref|XP_537233.2| PREDICTED: similar to CG5986-PA [Canis familiaris].
Length = 453
Score = 352 bits (903), Expect = 4e-97
Identities = 189/306 (61%), Positives = 206/306 (67%)
Frame = +3
Query: 87 MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 266
MAEAA LVW+RGP FGCKA+R S S ++ + RHC+DQ VP+E FFVKCNG LV+A+D
Sbjct: 1 MAEAAPLVWVRGPGFGCKAVRCASARWSAQEVVRRHCRDQAVPVECFFVKCNGSLVDAND 60
Query: 267 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 446
VQHGAVYSLEPRL GGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61 RVQHGAVYSLEPRLFGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120
Query: 447 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 626
WV QRKLAEPR CFTS YQQQCHEMAERLEDSVLKGMQAASS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLAEPRPCFTSRAYQQQCHEMAERLEDSVLKGMQAASS 180
Query: 627 KVVSAEIGEHRKRPYKSKTDRGASAGKRKCFWLGMDGLETXXXXXXXXXXXXXXXXXXXX 806
K+VSAE GE RKRP KSK DRGA AGKRKCFWLGMDGL+T
Sbjct: 181 KMVSAETGESRKRPNKSKADRGARAGKRKCFWLGMDGLQTAEESSSETSDDDGEEAPSTS 240
Query: 807 XXXXXXXXXXXDGVAMAAKLPSSSQQARVLVSTDPRSSEKLPTPVTDSGEGISEDLCAEL 986
D + +AA A V S +S E PTP T SG +S CA L
Sbjct: 241 GMSPQALDGGRDDMELAAGSSHHCPGASV-PSAASQSPEPPPTPGTGSGHAVSAGRCARL 299
Query: 987 GEASTE 1004
G++S E
Sbjct: 300 GQSSAE 305
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,607,203
Number of extensions: 1226514
Number of successful extensions: 4970
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4960
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 299
Effective length of database: 15,374,224
Effective search space: 4596892976
Effective search space used: 4596892976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007891
(1213 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130591.1| PREDICTED: UPF0667 protein C1orf55-like [Sus... 539 e-153
>ref|XP_003130591.1| PREDICTED: UPF0667 protein C1orf55-like [Sus scrofa].
Length = 455
Score = 539 bits (1389), Expect = e-153
Identities = 281/351 (80%), Positives = 281/351 (80%)
Frame = +3
Query: 87 MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 266
MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD
Sbjct: 1 MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 60
Query: 267 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 446
TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120
Query: 447 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 626
WV QRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 180
Query: 627 KVVSAEIGEHRKRPYKSKTDRGASAGKRKCFWLGMDGLETXXXXXXXXXXXXXXXXXXXX 806
KVVSAEIGEHRKRPYKSKTDRGASAGKRKCFWLGMDGLET
Sbjct: 181 KVVSAEIGEHRKRPYKSKTDRGASAGKRKCFWLGMDGLETAEGSSSESSDEDSEEAPGSS 240
Query: 807 XXXXXXXXXXXDGVAMAAKLPSSSQQARVLVSTDPRSSEKLPTPVTDSGEGISEDLCAEL 986
DGVAMAAKLPSSSQQARVLVSTDPRSSEKLPTPVTDS EGISEDLCAEL
Sbjct: 241 GVSFPVPPHGSDGVAMAAKLPSSSQQARVLVSTDPRSSEKLPTPVTDSREGISEDLCAEL 300
Query: 987 GEASTEEEHVERKTAAXXXXXXXXXXXXXXXXXXXXAAGVGVNKEQETQGM 1139
GEASTEEEHVERKTAA AAGVGVNKEQETQGM
Sbjct: 301 GEASTEEEHVERKTAAEIENTQEQKETETEEPREKEAAGVGVNKEQETQGM 351
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,180,036
Number of extensions: 765656
Number of successful extensions: 3089
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3081
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,829,335
Effective search space: 2675288505
Effective search space used: 2675288505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007891
(1213 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666055.1| hypothetical protein LOC208768 [Mus musculus]. 345 5e-95
>ref|NP_666055.1| hypothetical protein LOC208768 [Mus musculus].
Length = 448
Score = 345 bits (884), Expect = 5e-95
Identities = 195/320 (60%), Positives = 213/320 (66%), Gaps = 6/320 (1%)
Frame = +3
Query: 87 MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 266
MAEAA + W+RGP KAL S CSVRD I+RHCQ+Q VP+E FFV CNG+LVNA D
Sbjct: 1 MAEAAVVAWVRGPGTVWKALPCASVGCSVRDVIYRHCQEQEVPVECFFVTCNGVLVNAGD 60
Query: 267 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 446
VQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61 KVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120
Query: 447 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 626
WV QRKLAEP HCFTSPDYQ+QCHEMAERLEDSVLKGMQAASS
Sbjct: 121 WVKQQAEREAEKEQRRLERLQRKLAEPAHCFTSPDYQRQCHEMAERLEDSVLKGMQAASS 180
Query: 627 KVVSAEIGEHRKRPYKSKTDRGASA--GKRKCFWLGMDGLE----TXXXXXXXXXXXXXX 788
K+VSAEI E RKRP KSKTD+ SA KRKCFWLGMDGLE +
Sbjct: 181 KMVSAEITETRKRPNKSKTDQETSAKKRKRKCFWLGMDGLEAAEGSSTGSSEDSSEDDSE 240
Query: 789 XXXXXXXXXXXXXXXXXDGVAMAAKLPSSSQQARVLVSTDPRSSEKLPTPVTDSGEGISE 968
D V +AA P S + + T S EKL PVT+ G+GI E
Sbjct: 241 DAPGTSEQSCCAREDGIDAVEVAADRPGSPRSS--ASGTHSESPEKLQCPVTEPGQGILE 298
Query: 969 DLCAELGEASTEEEHVERKT 1028
+ E GE S ++E ERKT
Sbjct: 299 NTGTEPGETS-DKECNERKT 317
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,016,395
Number of extensions: 1015982
Number of successful extensions: 3789
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3782
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 300
Effective length of database: 12,493,815
Effective search space: 3748144500
Effective search space used: 3748144500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007891
(1213 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689821.3| hypothetical protein LOC163859 [Homo sapiens]. 408 e-114
>ref|NP_689821.3| hypothetical protein LOC163859 [Homo sapiens].
Length = 451
Score = 408 bits (1049), Expect = e-114
Identities = 220/351 (62%), Positives = 243/351 (69%), Gaps = 2/351 (0%)
Frame = +3
Query: 87 MAEAAELVWLRGPAFGCKALRVTSTLCSVRDFIHRHCQDQVVPLEYFFVKCNGLLVNASD 266
MAEAA LVW+RGP FGCKA+R S C+VRDFIHRHCQDQ VP+E FFVKCNG L+N SD
Sbjct: 1 MAEAAALVWIRGPGFGCKAVRCASGRCTVRDFIHRHCQDQNVPVENFFVKCNGALINTSD 60
Query: 267 TVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 446
TVQHGAVYSLEPRL GGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE
Sbjct: 61 TVQHGAVYSLEPRLCGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAE 120
Query: 447 WVXXXXXXXXXXXXXXXXXXQRKLAEPRHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 626
WV QRKL EP+HCFTSPDYQQQCHEMAERLEDSVLKGMQAASS
Sbjct: 121 WVKQQAEREAEKEQKRLERLQRKLVEPKHCFTSPDYQQQCHEMAERLEDSVLKGMQAASS 180
Query: 627 KVVSAEIGEHRKR--PYKSKTDRGASAGKRKCFWLGMDGLETXXXXXXXXXXXXXXXXXX 800
K+VSAEI E+RKR P KS+TDRGASAGKR+CFWLGM+GLET
Sbjct: 181 KMVSAEISENRKRQWPTKSQTDRGASAGKRRCFWLGMEGLETAEGSNSESSDDDSEEAPS 240
Query: 801 XXXXXXXXXXXXXDGVAMAAKLPSSSQQARVLVSTDPRSSEKLPTPVTDSGEGISEDLCA 980
+GV MAAK PS SQ+ARV V+TD S E+L PVTDSG I ED CA
Sbjct: 241 TSGMGFHAPKIGSNGVEMAAKFPSGSQRARV-VNTDHGSPEQLQIPVTDSGRHILEDSCA 299
Query: 981 ELGEASTEEEHVERKTAAXXXXXXXXXXXXXXXXXXXXAAGVGVNKEQETQ 1133
ELGE+ +EH+E + G G+NK++ET+
Sbjct: 300 ELGES---KEHMESRMVT-ETEETQEKKAESKEPIEEEPTGAGLNKDKETE 346
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,851,479
Number of extensions: 1207412
Number of successful extensions: 4791
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4777
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,835,944
Effective search space: 4435947256
Effective search space used: 4435947256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007891
(1213 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 961 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 961 bits (485), Expect = 0.0
Identities = 491/493 (99%)
Strand = Plus / Plus
Query: 721 ggttgggcatggacggactggagactgcagaggggtcgagctctgagagctccgatgagg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15903739 ggttgggcatggacggactggagactgcagaggggtcgagctctgagagctccgatgagg 15903798
Query: 781 acagtgaagaagcacctggttcttcaggagtgagctttcctgttcccccacatggcagtg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15903799 acagtgaagaagcacctggttcttcaggagtgagctttcctgttcccccacatggcagtg 15903858
Query: 841 atggtgttgcaatggcagccaaacttcctagtagttctcagcaggccagagtattagtga 900
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 15903859 atggtgttgcaatggcagccaaacttcctagtagttctcagcaggccagggtattagtga 15903918
Query: 901 gtacagaccccaggtcatcagaaaaactgccgacccccgtgactgactccggggagggga 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 15903919 gtacagaccccaggtcatcagaaaaactgccgacccccgtgactgactccagggagggga 15903978
Query: 961 tttcagaagacttgtgtgctgagctgggagaggcctccactgaggaggagcacgtggaaa 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15903979 tttcagaagacttgtgtgctgagctgggagaggcctccactgaggaggagcacgtggaaa 15904038
Query: 1021 ggaagacggctgcagaaatagagaacacccaggagcaaaaggagacagagactgaagaac 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15904039 ggaagacggctgcagaaatagagaacacccaggagcaaaaggagacagagactgaagaac 15904098
Query: 1081 ccagagaaaaggaagcagctggagttggagtgaataaggagcaagagacacaaggaatgg 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15904099 ccagagaaaaggaagcagctggagttggagtgaataaggagcaagagacacaaggaatgg 15904158
Query: 1141 ctgatggggaaggagctgctgtgggagcatctggaggagatgggggagatgtacctgttg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15904159 ctgatggggaaggagctgctgtgggagcatctggaggagatgggggagatgtacctgttg 15904218
Query: 1201 ccagacgggagga 1213
|||||||||||||
Sbjct: 15904219 ccagacgggagga 15904231
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 10 aacgtcaccgaaatgcgccgggctgtttgtggcgcttattgccttctgggaatctcgagg 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15889646 aacgtcaccgaaatgcgccgggctgtttgtggcgcttattgccttctgggaatctcgagg 15889705
Query: 70 ttcagtggctgggtaaaatggcggaagctgcggagctggtgtggcttcgtggccctgcct 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15889706 ttcagtggctgggtaaaatggcggaagctgcggagctggtgtggcttcgtggccctgcct 15889765
Query: 130 tcgggtgcaaggcgttgcgcgttacctcgaccctgtgctccgtacgggattttatccacc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15889766 tcgggtgcaaggcgttgcgcgttacctcgaccctgtgctccgtacgggattttatccacc 15889825
Query: 190 ggcactgccaagatcaggt 208
|||||||||||||||||||
Sbjct: 15889826 ggcactgccaagatcaggt 15889844
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 437 gatggctgaatgggtaaaacaacaagctgagcgagaagctgaaaaagagcagaagcgcct 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898756 gatggctgaatgggtaaaacaacaagctgagcgagaagctgaaaaagagcagaagcgcct 15898815
Query: 497 ggaacggctgcagcggaagctcgcagagcccaggcactgcttcaccagccccgactacca 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898816 ggaacggctgcagcggaagctcgcagagcccaggcactgcttcaccagccccgactacca 15898875
Query: 557 gcagcagtgccatgagatggccgagcgcctggaggattctgtcctcaaaggt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898876 gcagcagtgccatgagatggccgagcgcctggaggattctgtcctcaaaggt 15898927
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 205 aggttgttccattggaatacttctttgtgaaatgcaacggattactcgttaatgccagtg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15895866 aggttgttccattggaatacttctttgtgaaatgcaacggattactcgttaatgccagtg 15895925
Query: 265 acacagtgcagcatggagctgtttatagtttggagcccagacttcgtggtggaaaaggag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15895926 acacagtgcagcatggagctgtttatagtttggagcccagacttcgtggtggaaaaggag 15895985
Query: 325 gt 326
||
Sbjct: 15895986 gt 15895987
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 605 aggtatgcaggctgcctccagtaaggtggtatcagcagaaattggtgagcatcggaaacg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15900467 aggtatgcaggctgcctccagtaaggtggtatcagcagaaattggtgagcatcggaaacg 15900526
Query: 665 gccttacaaatccaaaacagacaggggagccagtgcagggaaaaggaaatgcttttggt 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15900527 gccttacaaatccaaaacagacaggggagccagtgcagggaaaaggaaatgcttttggt 15900585
Score = 220 bits (111), Expect = 1e-54
Identities = 114/115 (99%)
Strand = Plus / Plus
Query: 323 aggttttggctctatgctccgagcacttggtgctcagattgagaagacaaccaaccgaga 382
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15897935 aggttttggctctatgcttcgagcacttggtgctcagattgagaagacaaccaaccgaga 15897994
Query: 383 agcttgccgggatctcagtggaaggagactccgagatgtcaatcatgaaaaagcg 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15897995 agcttgccgggatctcagtggaaggagactccgagatgtcaatcatgaaaaagcg 15898049
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,782,405
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 6
Length of query: 1213
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1192
Effective length of database: 2,808,413,156
Effective search space: 3347628481952
Effective search space used: 3347628481952
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)