Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007893
(1142 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077266.1| pleckstrin homology domain-containing family... 548 e-162
Alignment gi|NP_001069751.1| pleckstrin homology domain-containing family... 122 8e-28
>ref|NP_001077266.1| pleckstrin homology domain-containing family O member 1 [Bos taurus].
Length = 409
Score = 548 bits (1413), Expect(2) = e-162
Identities = 273/298 (91%), Positives = 275/298 (92%)
Frame = +2
Query: 170 MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV 349
MMKKNNSTKRGPQDGNHQ APPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV
Sbjct: 1 MMKKNNSTKRGPQDGNHQCAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV 60
Query: 350 KDEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEK 529
KDEKNIQEVFDLSDYEKCEEL FTLAHSKQPGNTAPNLIFLAVSPEEK
Sbjct: 61 KDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEK 120
Query: 530 ESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST 709
ESWINALNSAITRAKNR+LDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST
Sbjct: 121 ESWINALNSAITRAKNRVLDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST 180
Query: 710 SDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGL 889
SDGMLTLDLIQEEDPSPEE TSCAESFRVDLDKSVAQLAGSRRRADSDRIQPS+DRA GL
Sbjct: 181 SDGMLTLDLIQEEDPSPEEPTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSSDRASGL 240
Query: 890 PRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAEDPPTPI 1063
PR WEKPDKGATYTPQAPKKLT TEK RCASLEEILSQRDA PA LQ RAEDPPTPI
Sbjct: 241 PRLWEKPDKGATYTPQAPKKLTATEKSRCASLEEILSQRDAVPAHTLQRRAEDPPTPI 298
Score = 41.6 bits (96), Expect(2) = e-162
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLEKTQELLA
Sbjct: 304 QLSRIQDLVARKLEKTQELLA 324
>ref|NP_001069751.1| pleckstrin homology domain-containing family O member 2 [Bos
taurus].
Length = 499
Score = 122 bits (305), Expect = 8e-28
Identities = 77/188 (40%), Positives = 104/188 (55%)
Frame = +2
Query: 173 MKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 352
M++ + G + + Q+A +K GW++K G F +WK+RY++L QL + E E
Sbjct: 1 MEEEGVKEGGQRPRSAQTA--DKAGWIKK--SSGGFLGLWKDRYLLLCQAQLLVYENE-- 54
Query: 353 DEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKE 532
DE+ E +L YEKC++L F L S PGN ++ F A S EEKE
Sbjct: 55 DEQKCVETVELGSYEKCQDLRALLKRKHR----FILLRS--PGNKVSDIKFQAPSGEEKE 108
Query: 533 SWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS 712
SWI ALN I R KN+ DEV V++ L H TRDR + RRPPTR HL VA+ + S
Sbjct: 109 SWIKALNEGINRGKNKAFDEVKVDKSCVLEHVTRDRVRRDQRRRPPTRVHLKEVAN-AAS 167
Query: 713 DGMLTLDL 736
DG+ LDL
Sbjct: 168 DGLSRLDL 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,288,526
Number of extensions: 1280880
Number of successful extensions: 6694
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6600
Number of HSP's successfully gapped: 3
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007893
(1142 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849847.1| PREDICTED: similar to CK2 interacting protein 1... 520 e-153
Alignment gi|XP_859952.1| PREDICTED: similar to CK2 interacting protein 1... 434 e-127
Alignment gi|XP_859844.1| PREDICTED: similar to CK2 interacting protein 1... 176 4e-44
Alignment gi|XP_544722.2| PREDICTED: similar to PH domain-containing prot... 121 1e-27
Alignment gi|XP_859882.1| PREDICTED: similar to CK2 interacting protein 1... 112 9e-25
>ref|XP_849847.1| PREDICTED: similar to CK2 interacting protein 1; HQ0024c protein
isoform 1 [Canis familiaris].
Length = 408
Score = 520 bits (1339), Expect(2) = e-153
Identities = 260/303 (85%), Positives = 269/303 (88%), Gaps = 2/303 (0%)
Frame = +2
Query: 173 MKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 352
MKKN+ KRG QDG+H APPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK
Sbjct: 1 MKKNHPAKRGLQDGSHPCAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 60
Query: 353 DEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKE 532
DEKNIQEVFDLSDYEKCEEL FTLAHSKQPGNTAPNLIFLAVSPEEKE
Sbjct: 61 DEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEKE 120
Query: 533 SWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS 712
SWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS
Sbjct: 121 SWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS 180
Query: 713 DGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGLP 892
DGMLTLDLIQEE+PSPEE TSCA+SFRVDLDKS AQLAGSRRRADSD +QPS++RA GLP
Sbjct: 181 DGMLTLDLIQEEEPSPEERTSCADSFRVDLDKSAAQLAGSRRRADSDHVQPSSERASGLP 240
Query: 893 RRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAEDPPT--PIH 1066
R WEKPDKGATYTPQAPKKLTPTEKGRCASLEEILS+RDA P LR EDPPT P H
Sbjct: 241 RSWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSRRDAVPPCTNPLRPEDPPTLLPPH 300
Query: 1067 PTR 1075
P +
Sbjct: 301 PAQ 303
Score = 41.6 bits (96), Expect(2) = e-153
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLEKTQELLA
Sbjct: 303 QLSRIQDLVARKLEKTQELLA 323
>ref|XP_859952.1| PREDICTED: similar to CK2 interacting protein 1; HQ0024c protein
isoform 4 [Canis familiaris].
Length = 374
Score = 434 bits (1115), Expect(2) = e-127
Identities = 226/303 (74%), Positives = 235/303 (77%), Gaps = 2/303 (0%)
Frame = +2
Query: 173 MKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 352
MKKN+ KRG QDG+H APPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK
Sbjct: 1 MKKNHPAKRGLQDGSHPCAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 60
Query: 353 DEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKE 532
DEKNIQEVFDLSDYEKCEEL FTLAHSKQPGNTAPNLIFLAVSPEEKE
Sbjct: 61 DEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEKE 120
Query: 533 SWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS 712
SWINALNSAITRAKNRILDE ASTSTS
Sbjct: 121 SWINALNSAITRAKNRILDE----------------------------------ASTSTS 146
Query: 713 DGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGLP 892
DGMLTLDLIQEE+PSPEE TSCA+SFRVDLDKS AQLAGSRRRADSD +QPS++RA GLP
Sbjct: 147 DGMLTLDLIQEEEPSPEERTSCADSFRVDLDKSAAQLAGSRRRADSDHVQPSSERASGLP 206
Query: 893 RRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAEDPPT--PIH 1066
R WEKPDKGATYTPQAPKKLTPTEKGRCASLEEILS+RDA P LR EDPPT P H
Sbjct: 207 RSWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSRRDAVPPCTNPLRPEDPPTLLPPH 266
Query: 1067 PTR 1075
P +
Sbjct: 267 PAQ 269
Score = 41.6 bits (96), Expect(2) = e-127
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLEKTQELLA
Sbjct: 269 QLSRIQDLVARKLEKTQELLA 289
>ref|XP_859844.1| PREDICTED: similar to CK2 interacting protein 1; HQ0024c protein
isoform 2 [Canis familiaris].
Length = 114
Score = 176 bits (446), Expect = 4e-44
Identities = 85/105 (80%), Positives = 87/105 (82%)
Frame = +2
Query: 173 MKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 352
MKKN+ KRG QDG+H APPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK
Sbjct: 1 MKKNHPAKRGLQDGSHPCAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 60
Query: 353 DEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNT 487
DEKNIQEVFDLSDYEKCEEL FTLAHSKQPGNT
Sbjct: 61 DEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNT 105
>ref|XP_544722.2| PREDICTED: similar to PH domain-containing protein [Canis
familiaris].
Length = 498
Score = 121 bits (303), Expect = 1e-27
Identities = 96/286 (33%), Positives = 128/286 (44%), Gaps = 4/286 (1%)
Frame = +2
Query: 236 EKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELX 415
+K GW++K G G+ +WK+RY++L QL + E E DE+ E +L YEKC++L
Sbjct: 20 DKAGWIKKSSG-GLLG-LWKDRYLLLCQAQLLVYENE--DEQKCVETVELGSYEKCQDLR 75
Query: 416 XXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEV 595
F L S PGN ++ F A S EEKESWI ALN I R KN+ DEV
Sbjct: 76 ALLKRKHR----FILQRS--PGNKVSDIKFQATSGEEKESWIKALNEGINRGKNKAFDEV 129
Query: 596 TVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDPSPEESTS 775
V++ L H TRDR + RRPPTR HL VA+ + SDG+L LDL + P
Sbjct: 130 KVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVAN-AASDGLLRLDLEVPDSGPPV---- 184
Query: 776 CAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGLPRRWEKPDKGATYTPQAPKKLT 955
PS D + PR +P T AP+ +
Sbjct: 185 ---------------------------FVPSNDVSAAQPREILRPPVPPTKPSSAPETTS 217
Query: 956 PTEKGRCASLEEILSQRDAAPARALQLRA----EDPPTPIHPTRGS 1081
+ S+E +R +PA A ED TP+ GS
Sbjct: 218 LGD-----SMETPAGERAPSPASASSESCSGSREDSETPVQEDSGS 258
>ref|XP_859882.1| PREDICTED: similar to CK2 interacting protein 1; HQ0024c protein
isoform 3 [Canis familiaris].
Length = 71
Score = 112 bits (279), Expect = 9e-25
Identities = 51/58 (87%), Positives = 53/58 (91%)
Frame = +2
Query: 173 MKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKE 346
MKKN+ KRG QDG+H APPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKE
Sbjct: 1 MKKNHPAKRGLQDGSHPCAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKE 58
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,008,798
Number of extensions: 1280487
Number of successful extensions: 6898
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6830
Number of HSP's successfully gapped: 8
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007893
(1142 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924941.3| PREDICTED: pleckstrin homology domain-contai... 573 e-169
Alignment gi|XP_003355251.1| PREDICTED: pleckstrin homology domain-contai... 252 3e-73
Alignment gi|XP_003355260.1| PREDICTED: pleckstrin homology domain-contai... 247 1e-71
Alignment gi|XP_003125851.2| PREDICTED: hypothetical protein LOC100515829... 189 2e-48
Alignment gi|XP_003125850.2| PREDICTED: hypothetical protein LOC100515658... 132 5e-31
Alignment gi|XP_001926815.3| PREDICTED: pleckstrin homology domain-contai... 96 3e-20
>ref|XP_001924941.3| PREDICTED: pleckstrin homology domain-containing family O member 1
isoform 1 [Sus scrofa].
Length = 409
Score = 573 bits (1476), Expect(2) = e-169
Identities = 286/303 (94%), Positives = 287/303 (94%)
Frame = +2
Query: 170 MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV 349
MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV
Sbjct: 1 MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV 60
Query: 350 KDEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEK 529
KDEKNIQEVFDLSDYEKCEEL FTLAHSKQPGNTAPNLIFLAVSPEEK
Sbjct: 61 KDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEK 120
Query: 530 ESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST 709
ESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST
Sbjct: 121 ESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST 180
Query: 710 SDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGL 889
SDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGL
Sbjct: 181 SDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGL 240
Query: 890 PRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAEDPPTPIHP 1069
PRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQL+AEDPPTPI P
Sbjct: 241 PRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLQAEDPPTPIPP 300
Query: 1070 TRG 1078
G
Sbjct: 301 HPG 303
Score = 41.6 bits (96), Expect(2) = e-169
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLEKTQELLA
Sbjct: 304 QLSRIQDLVARKLEKTQELLA 324
>ref|XP_003355251.1| PREDICTED: pleckstrin homology domain-containing family O member 1
isoform 2 [Sus scrofa].
Length = 237
Score = 252 bits (644), Expect(2) = 3e-73
Identities = 127/131 (96%), Positives = 128/131 (97%)
Frame = +2
Query: 686 MAVASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQP 865
MAVASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQP
Sbjct: 1 MAVASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQP 60
Query: 866 SADRAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAE 1045
SADRAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQL+AE
Sbjct: 61 SADRAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLQAE 120
Query: 1046 DPPTPIHPTRG 1078
DPPTPI P G
Sbjct: 121 DPPTPIPPHPG 131
Score = 41.6 bits (96), Expect(2) = 3e-73
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLEKTQELLA
Sbjct: 132 QLSRIQDLVARKLEKTQELLA 152
>ref|XP_003355260.1| PREDICTED: pleckstrin homology domain-containing family O member
1-like [Sus scrofa].
Length = 238
Score = 247 bits (631), Expect(2) = 1e-71
Identities = 124/128 (96%), Positives = 125/128 (97%)
Frame = +2
Query: 695 ASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSAD 874
ASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSAD
Sbjct: 5 ASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSAD 64
Query: 875 RAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAEDPP 1054
RAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQL+AEDPP
Sbjct: 65 RAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLQAEDPP 124
Query: 1055 TPIHPTRG 1078
TPI P G
Sbjct: 125 TPIPPHPG 132
Score = 41.6 bits (96), Expect(2) = 1e-71
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLEKTQELLA
Sbjct: 133 QLSRIQDLVARKLEKTQELLA 153
>ref|XP_003125851.2| PREDICTED: hypothetical protein LOC100515829 [Sus scrofa].
Length = 399
Score = 189 bits (481), Expect = 2e-48
Identities = 104/150 (69%), Positives = 104/150 (69%), Gaps = 33/150 (22%)
Frame = +2
Query: 344 EVKDEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNT------------ 487
EVKDEKNIQEVFDLSDYEKCEEL FTLAHSKQPGNT
Sbjct: 22 EVKDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTVRSPYHLGNWII 81
Query: 488 ---------------------APNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVE 604
APNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVE
Sbjct: 82 DGARGEANSKTLAETRIFSSQAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVE 141
Query: 605 EDSYLAHPTRDRAKIQHSRRPPTRGHLMAV 694
EDSYLAHPTRDRAKIQHSRRPPTRGHLMAV
Sbjct: 142 EDSYLAHPTRDRAKIQHSRRPPTRGHLMAV 171
>ref|XP_003125850.2| PREDICTED: hypothetical protein LOC100515658, partial [Sus scrofa].
Length = 315
Score = 132 bits (331), Expect = 5e-31
Identities = 68/115 (59%), Positives = 68/115 (59%)
Frame = +2
Query: 2 CNRSYKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPXXXXXXXXXXXXXXXXXXMMKK 181
CNRSYK KRP MMKK
Sbjct: 152 CNRSYKEGESPGEGGRSGGGAGGLSAPSPWAGAPSKRPRPPTRGRPSAPAPARPPGMMKK 211
Query: 182 NNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKE 346
NNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKE
Sbjct: 212 NNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKE 266
>ref|XP_001926815.3| PREDICTED: pleckstrin homology domain-containing family O member
2-like [Sus scrofa].
Length = 606
Score = 96.3 bits (238), Expect = 3e-20
Identities = 58/128 (45%), Positives = 71/128 (55%)
Frame = +2
Query: 353 DEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKE 532
DE+ E +L YEKC++L F L S PGN ++ F A S EEKE
Sbjct: 162 DEQKCVETVELGSYEKCQDLRALLKRKHR----FILLRS--PGNKVSDIKFQAPSGEEKE 215
Query: 533 SWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS 712
SWI ALN I R KN+ DEV V++ L H TRDR + RRPPTR HL VA+ + S
Sbjct: 216 SWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVAN-AAS 274
Query: 713 DGMLTLDL 736
DG+ LDL
Sbjct: 275 DGLSRLDL 282
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,194,496
Number of extensions: 901145
Number of successful extensions: 4351
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4316
Number of HSP's successfully gapped: 10
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007893
(1142 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075809.1| pleckstrin homology domain-containing family O ... 496 e-146
Alignment gi|NP_694759.1| pleckstrin homology domain-containing family O ... 115 5e-26
>ref|NP_075809.1| pleckstrin homology domain-containing family O member 1 [Mus
musculus].
Length = 408
Score = 496 bits (1278), Expect(2) = e-146
Identities = 252/301 (83%), Positives = 259/301 (86%), Gaps = 2/301 (0%)
Frame = +2
Query: 173 MKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVK 352
MKK+ S KRGP DGNHQSA PEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLY+SEKEVK
Sbjct: 1 MKKSGSGKRGPPDGNHQSAAPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYVSEKEVK 60
Query: 353 DEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKE 532
DEKN QEVFDLSDYEKCEEL FTLA +QPG TAPNLIFLAVSPEEKE
Sbjct: 61 DEKNSQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLARCRQPGTTAPNLIFLAVSPEEKE 120
Query: 533 SWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS 712
SWINAL+SAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS
Sbjct: 121 SWINALSSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTS 180
Query: 713 DGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGLP 892
DGMLTLDLIQEEDPSPEE SCAESFRVDLDKSVAQLAGSRRRADSDRIQPS+ RA L
Sbjct: 181 DGMLTLDLIQEEDPSPEEPASCAESFRVDLDKSVAQLAGSRRRADSDRIQPSSQRASSLS 240
Query: 893 RRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAED--PPTPIH 1066
R WEKPDKGA YTPQA KK TEK RCASLEEILSQRD APAR L L+AE+ PP P
Sbjct: 241 RPWEKPDKGAPYTPQALKKFPSTEKSRCASLEEILSQRDTAPARPLHLQAEESLPPVPAQ 300
Query: 1067 P 1069
P
Sbjct: 301 P 301
Score = 41.6 bits (96), Expect(2) = e-146
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLEKTQELLA
Sbjct: 303 QLSRIQDLVARKLEKTQELLA 323
>ref|NP_694759.1| pleckstrin homology domain-containing family O member 2 [Mus
musculus].
Length = 495
Score = 115 bits (289), Expect = 5e-26
Identities = 73/167 (43%), Positives = 95/167 (56%)
Frame = +2
Query: 236 EKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELX 415
+K GW++K G G+ +WK+RY++L QL + E E DE+ E +L YEKC++L
Sbjct: 20 DKAGWIKKSSG-GLLG-LWKDRYLLLCQAQLLVYENE--DEQKCVETVELGSYEKCQDLR 75
Query: 416 XXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEV 595
F L S PGN ++ F A S EEKESWI ALN I R KN+ DEV
Sbjct: 76 TLLKRKHHR---FILLRS--PGNKVSDIKFQAPSGEEKESWIKALNEGINRGKNKAFDEV 130
Query: 596 TVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDL 736
V++ L H TR+R + RRPPTR HL VAS + SDG+ LDL
Sbjct: 131 KVDKTCALEHVTRNRVRGGQRRRPPTRIHLKEVAS-AASDGLSRLDL 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,133,047
Number of extensions: 1017356
Number of successful extensions: 5185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5120
Number of HSP's successfully gapped: 3
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007893
(1142 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057358.2| pleckstrin homology domain-containing family O ... 544 e-160
Alignment gi|NP_079477.2| pleckstrin homology domain-containing family O ... 117 2e-26
Alignment gi|NP_001181988.1| pleckstrin homology domain-containing family... 99 7e-21
>ref|NP_057358.2| pleckstrin homology domain-containing family O member 1 [Homo
sapiens].
Length = 409
Score = 544 bits (1402), Expect(2) = e-160
Identities = 274/303 (90%), Positives = 275/303 (90%)
Frame = +2
Query: 170 MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV 349
MMKKNNS KRGPQDGN Q APPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV
Sbjct: 1 MMKKNNSAKRGPQDGNQQPAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEV 60
Query: 350 KDEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEK 529
KDEKNIQEVFDLSDYEKCEEL FTLAHSKQPGNTAPNLIFLAVSPEEK
Sbjct: 61 KDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEK 120
Query: 530 ESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST 709
ESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST
Sbjct: 121 ESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTST 180
Query: 710 SDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGL 889
SDGMLTLDLIQEEDPSPEE TSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRA L
Sbjct: 181 SDGMLTLDLIQEEDPSPEEPTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRASSL 240
Query: 890 PRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLRAEDPPTPIHP 1069
R WEK DKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAA AR LQLRAE+PPTP P
Sbjct: 241 SRPWEKTDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAASARTLQLRAEEPPTPALP 300
Query: 1070 TRG 1078
G
Sbjct: 301 NPG 303
Score = 40.0 bits (92), Expect(2) = e-160
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +1
Query: 1078 QLSRIQDLVARKLEKTQELLA 1140
QLSRIQDLVARKLE+TQELLA
Sbjct: 304 QLSRIQDLVARKLEETQELLA 324
>ref|NP_079477.2| pleckstrin homology domain-containing family O member 2 isoform 1
[Homo sapiens].
Length = 490
Score = 117 bits (294), Expect = 2e-26
Identities = 73/167 (43%), Positives = 95/167 (56%)
Frame = +2
Query: 236 EKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELX 415
+K GW++K G G+ WK+RY++L QL + E E D++ E +L YEKC++L
Sbjct: 20 DKAGWIKKSSG-GLLG-FWKDRYLLLCQAQLLVYENE--DDQKCVETVELGSYEKCQDLR 75
Query: 416 XXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEV 595
F L S PGN ++ F A + EEKESWI ALN I R KN+ DEV
Sbjct: 76 ALLKRKHR----FILLRS--PGNKVSDIKFQAPTGEEKESWIKALNEGINRGKNKAFDEV 129
Query: 596 TVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDL 736
V++ L H TRDR + RRPPTR HL VAS + SDG+L LDL
Sbjct: 130 KVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVAS-AASDGLLRLDL 175
>ref|NP_001181988.1| pleckstrin homology domain-containing family O member 2 isoform 2
[Homo sapiens].
Length = 440
Score = 99.0 bits (245), Expect = 7e-21
Identities = 59/131 (45%), Positives = 74/131 (56%)
Frame = +2
Query: 344 EVKDEKNIQEVFDLSDYEKCEELXXXXXXXXXXXXXFTLAHSKQPGNTAPNLIFLAVSPE 523
E +D++ E +L YEKC++L F L S PGN ++ F A + E
Sbjct: 2 EEEDDQKCVETVELGSYEKCQDLRALLKRKHR----FILLRS--PGNKVSDIKFQAPTGE 55
Query: 524 EKESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVAST 703
EKESWI ALN I R KN+ DEV V++ L H TRDR + RRPPTR HL VAS
Sbjct: 56 EKESWIKALNEGINRGKNKAFDEVKVDKSCALEHVTRDRVRGGQRRRPPTRVHLKEVAS- 114
Query: 704 STSDGMLTLDL 736
+ SDG+L LDL
Sbjct: 115 AASDGLLRLDL 125
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,940,503
Number of extensions: 1238948
Number of successful extensions: 6562
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6413
Number of HSP's successfully gapped: 4
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007893
(1142 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 684 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 684 bits (345), Expect = 0.0
Identities = 351/353 (99%)
Strand = Plus / Minus
Query: 694 ggcttcgacgtctacctcggatggaatgctaaccttggacctgatccaggaggaggaccc 753
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 108199217 ggcttcgacgtctacctcggatggaatgctgaccttggacctgatccaggaggaggaccc 108199158
Query: 754 ttcccctgaggaatcaacctcctgtgctgagagctttcgagtcgacctggacaagtctgt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108199157 ttcccctgaggaatcaacctcctgtgctgagagctttcgagtcgacctggacaagtctgt 108199098
Query: 814 ggcccagctggcaggcagccggcggagagcagactcggaccgcatccagccctccgcgga 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108199097 ggcccagctggcaggcagccggcggagagcagactcggaccgcatccagccctccgcgga 108199038
Query: 874 ccgggcaggtggccttccccgacgttgggaaaagccagacaaaggggccacttatacccc 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108199037 ccgggcaggtggccttccccgacgttgggaaaagccagacaaaggggccacttatacccc 108198978
Query: 934 ccaggcacccaagaagttgactcccacagaaaaaggccgctgtgcctccctggaggagat 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108198977 ccaggcacccaagaagttgactcccacagaaaaaggccgctgtgcctccctggaggagat 108198918
Query: 994 cctgtctcagcgggacgctgccccggcccgtgccctccaactgcgggccgagg 1046
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 108198917 cctgtctcagcgggacgctgccccggcccgtgccctccaactgcaggccgagg 108198865
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 199 ggggcctcaggatggaaaccatcagtctgcaccgcctgagaaggtcggctgggtccggaa 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108207187 ggggcctcaggatggaaaccatcagtctgcaccgcctgagaaggtcggctgggtccggaa 108207128
Query: 259 attctgcgggaaagggattttcagggagatttggaaaaaccgctatgtggtgctgaaagg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108207127 attctgcgggaaagggattttcagggagatttggaaaaaccgctatgtggtgctgaaagg 108207068
Query: 319 ggaccagctctacatctctgaaaaggaggta 349
|||||||||||||||||||||||||||||||
Sbjct: 108207067 ggaccagctctacatctctgaaaaggaggta 108207037
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 345 aggtaaaagatgagaaaaatattcaagaagtgtttgacctgagtgactatgagaagtgtg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108202513 aggtaaaagatgagaaaaatattcaagaagtgtttgacctgagtgactatgagaagtgtg 108202454
Query: 405 aagagctccggaaatccaagagcaggagcaagaagaaccatagcaagttcactcttgccc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108202453 aagagctccggaaatccaagagcaggagcaagaagaaccatagcaagttcactcttgccc 108202394
Query: 465 actccaaacagcccgggaacacgg 488
||||||||||||||||||||||||
Sbjct: 108202393 actccaaacagcccgggaacacgg 108202370
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 345 aggtaaaagatgagaaaaatattcaagaagtgtttgacctgagtgactatgagaagtgtg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108400930 aggtaaaagatgagaaaaatattcaagaagtgtttgacctgagtgactatgagaagtgtg 108400989
Query: 405 aagagctccggaaatccaagagcaggagcaagaagaaccatagcaagttcactcttgccc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108400990 aagagctccggaaatccaagagcaggagcaagaagaaccatagcaagttcactcttgccc 108401049
Query: 465 actccaaacagcccgggaacacgg 488
||||||||||||||||||||||||
Sbjct: 108401050 actccaaacagcccgggaacacgg 108401073
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 487 ggcacccaacctgatattcctggcagtcagtccagaagagaaggaatcatggatcaatgc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108201396 ggcacccaacctgatattcctggcagtcagtccagaagagaaggaatcatggatcaatgc 108201337
Query: 547 cctcaactctgccatcacccgagccaagaaccgcatcctggatgaggtca 596
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108201336 cctcaactctgccatcacccgagccaagaaccgcatcctggatgaggtca 108201287
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 487 ggcacccaacctgatattcctggcagtcagtccagaagagaaggaatcatggatcaatgc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108402047 ggcacccaacctgatattcctggcagtcagtccagaagagaaggaatcatggatcaatgc 108402106
Query: 547 cctcaactctgccatcacccgagccaagaaccgcatcctggatgaggtca 596
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108402107 cctcaactctgccatcacccgagccaagaaccgcatcctggatgaggtca 108402156
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 591 aggtcaccgttgaagaggacagctatctcgcccaccccactcgagacagggcaaaaatcc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108200713 aggtcaccgttgaagaggacagctatctcgcccaccccactcgagacagggcaaaaatcc 108200654
Query: 651 agcactcccgccgccccccaacccggggacacctgatggccgtgg 695
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108200653 agcactcccgccgccccccaacccggggacacctgatggccgtgg 108200609
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 591 aggtcaccgttgaagaggacagctatctcgcccaccccactcgagacagggcaaaaatcc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108402730 aggtcaccgttgaagaggacagctatctcgcccaccccactcgagacagggcaaaaatcc 108402789
Query: 651 agcactcccgccgccccccaacccggggacacctgatggccgtgg 695
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108402790 agcactcccgccgccccccaacccggggacacctgatggccgtgg 108402834
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 1074 ggggcagctgtcccggatccaggacctggtagcaaggaaactggagaagactcaggagct 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108198836 ggggcagctgtcccggatccaggacctggtagcaaggaaactggagaagactcaggagct 108198777
Query: 1134 gctggcaga 1142
|||||||||
Sbjct: 108198776 gctggcaga 108198768
Score = 103 bits (52), Expect = 2e-19
Identities = 94/115 (81%)
Strand = Plus / Minus
Query: 1 gtgtaaccggagctacaaagaaggggagagtccgggagagggagggaggannnnnnnnnn 60
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108208050 gtgtaaccggagctacaaagaaggggagagtccgggagagggagggaggagcggcggcgg 108207991
Query: 61 nnnnnnnnnnntctccgcaccctccccctgggcaggagccccctcgaagcggcct 115
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108207990 cgccgggggcctctccgcaccctccccctgggcaggagccccctcgaagcggcct 108207936
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 169 aatgatgaagaagaacaattccaccaagaggg 200
||||||||||||||||||||||||||||||||
Sbjct: 108207882 aatgatgaagaagaacaattccaccaagaggg 108207851
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,209,802
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 12
Length of query: 1142
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1121
Effective length of database: 2,808,413,156
Effective search space: 3148231147876
Effective search space used: 3148231147876
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)