Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007894
(1421 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092844.1| cell surface glycoprotein CD200 receptor 1 p... 422 e-118
Alignment gi|XP_002684796.1| PREDICTED: cell surface glycoprotein CD200 r... 293 3e-79
Alignment gi|XP_002702455.1| PREDICTED: cell surface glycoprotein CD200 r... 291 1e-78
>ref|NP_001092844.1| cell surface glycoprotein CD200 receptor 1 precursor [Bos taurus].
Length = 355
Score = 422 bits (1086), Expect = e-118
Identities = 217/332 (65%), Positives = 242/332 (72%)
Frame = +3
Query: 333 MPCTWVTSDXXXXXXXXXXXVAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYR 512
MPCTW+TSD VA SAG EG TSNNS M Q+ +S ST TSST R
Sbjct: 1 MPCTWITSDLQLRLILTLFFVAECLSAGMEGTKTSNNS-MQQLDNGNHSSVST-TSSTER 58
Query: 513 KQSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNE 692
KQSTVT AEV SL VLVDT A L CPPVLW +V+V TWEIVLRDK PCF AYR DTN+
Sbjct: 59 KQSTVTLYAEVKTSLSVLVDTKAVLTCPPVLWPSVLVVTWEIVLRDKPPCFGAYRRDTNQ 118
Query: 693 TTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPE 872
TT GNCTD+RI W+SR D+NPALQ+ PVAITHDG Y CQ V +GNFH YHLQVLVPPE
Sbjct: 119 TTRGNCTDKRITWASRPDENPALQVDPVAITHDGNYTCQIVTSDGNFHHEYHLQVLVPPE 178
Query: 873 VTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPN 1052
VTL+Q+E GT VCKA AGKPAAQISWTPEGDC TEQ P+ G+GTVTV S C W +RHV N
Sbjct: 179 VTLIQTEKGTAVCKAAAGKPAAQISWTPEGDCDTEQGPYWGDGTVTVQSTCRWGSRHVLN 238
Query: 1053 VSCTVSHVTGNKSLFLELNQVDNYKRMYLRXXXXXXXXXXXXXXXGSIWLLKILGCRKCK 1232
VSC+VSH+ GNKSL ++L+Q +L+ GSIWLLKI GCRKCK
Sbjct: 239 VSCSVSHLAGNKSLSIQLSQGAEIP-AHLKNLYITAPIFIILIVVGSIWLLKISGCRKCK 297
Query: 1233 LKKTEPTPVVEEDEMQPYASYXEKNNPLYDTT 1328
LKKTE TPVV+EDEM+PYASY EKNNPLYD T
Sbjct: 298 LKKTEHTPVVQEDEMEPYASYTEKNNPLYDIT 329
>ref|XP_002684796.1| PREDICTED: cell surface glycoprotein CD200 receptor 1-like [Bos
taurus].
Length = 277
Score = 293 bits (749), Expect = 3e-79
Identities = 136/193 (70%), Positives = 158/193 (81%)
Frame = +3
Query: 534 LAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCT 713
++ + SL VLVDT A L CPPVLW +V+V TWEIVLRDK PCF AYR DTN+TT GNCT
Sbjct: 50 ISSIKTSLSVLVDTKAVLTCPPVLWPSVLVVTWEIVLRDKPPCFGAYRRDTNQTTRGNCT 109
Query: 714 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSE 893
D+RI W+SR D+NPALQ+ PVAITHDG Y CQ + +GNF+ YHLQVLVPPEVTLVQ+E
Sbjct: 110 DKRITWASRPDENPALQVDPVAITHDGNYTCQIITSDGNFYHEYHLQVLVPPEVTLVQTE 169
Query: 894 NGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSH 1073
GT VCKA AGKPAAQISWTPEGDCVTEQ+P+ G+GTVTV S C W RHV NVSC+VSH
Sbjct: 170 KGTAVCKAAAGKPAAQISWTPEGDCVTEQDPYWGDGTVTVQSTCRWGGRHVLNVSCSVSH 229
Query: 1074 VTGNKSLFLELNQ 1112
+ GNKSL +EL++
Sbjct: 230 LAGNKSLSIELDK 242
>ref|XP_002702455.1| PREDICTED: cell surface glycoprotein CD200 receptor 1-like, partial
[Bos taurus].
Length = 234
Score = 291 bits (744), Expect = 1e-78
Identities = 136/187 (72%), Positives = 155/187 (82%)
Frame = +3
Query: 552 SLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDERIIW 731
SL VLVDT A L CPPVLW +V+V TWEIVLRDK PCF AYR DTN+TT GNCTD+RI W
Sbjct: 3 SLSVLVDTKAVLTCPPVLWPSVLVVTWEIVLRDKPPCFGAYRRDTNQTTRGNCTDKRITW 62
Query: 732 SSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENGTVVC 911
+SR D+NPALQ+ PVAITHDG Y CQ + +GNF+ YHLQVLVPPEVTLVQ+E GT VC
Sbjct: 63 ASRPDENPALQVDPVAITHDGNYTCQIITSDGNFYHEYHLQVLVPPEVTLVQTEKGTAVC 122
Query: 912 KAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVTGNKS 1091
KA AGKPAAQISWTPEGDCVTEQ+P+ G+GTVTV S C W RHV NVSC+VSH+ GNKS
Sbjct: 123 KAAAGKPAAQISWTPEGDCVTEQDPYWGDGTVTVQSTCRWGGRHVLNVSCSVSHLAGNKS 182
Query: 1092 LFLELNQ 1112
L +EL++
Sbjct: 183 LSIELDK 189
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,528,880
Number of extensions: 1412135
Number of successful extensions: 4462
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4441
Number of HSP's successfully gapped: 3
Length of query: 473
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,174,046
Effective search space: 5201874882
Effective search space used: 5201874882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007894
(1421 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545099.2| PREDICTED: similar to CD200 receptor 1 isoform ... 326 3e-89
Alignment gi|XP_545098.2| PREDICTED: similar to Cell surface glycoprotein... 239 5e-63
>ref|XP_545099.2| PREDICTED: similar to CD200 receptor 1 isoform a [Canis familiaris].
Length = 325
Score = 326 bits (836), Expect = 3e-89
Identities = 179/338 (52%), Positives = 208/338 (61%), Gaps = 4/338 (1%)
Frame = +3
Query: 333 MPCTWVTSDXXXXXXXXXXXVAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYR 512
MPC T + V G E P T NN +Y AST TS R
Sbjct: 1 MPCAGRTFELWLLLGLTIFCVFECIGTGGESPGTPNNLT-------QYQTASTNTSPVER 53
Query: 513 KQSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNE 692
KQ ++TP E N SL V VDT A L+CP + V+V TW ++ RD C RAYR D+N+
Sbjct: 54 KQKSITPPVEANTSLSVFVDTRAVLHCPNAT-SNVLVVTWSVIFRDNTSCIRAYRTDSNK 112
Query: 693 TTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPE 872
T CTDERI W SR DQN AL+I PVAITH+GYY+C+ V P+GNF G+HLQVLVPP+
Sbjct: 113 TREKTCTDERISWDSRPDQNFALRINPVAITHEGYYKCEVVTPDGNFCHGHHLQVLVPPK 172
Query: 873 VTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPN 1052
VTL ENGT VC AVAGKPAAQISWTP GDC T + GN TVTV S C+W+ V
Sbjct: 173 VTLSLGENGTTVCWAVAGKPAAQISWTPTGDCHTVEE-QLGNDTVTVQSTCHWEDHQVSE 231
Query: 1053 VSCTVSHVTGNKSLFLELNQVD----NYKRMYLRXXXXXXXXXXXXXXXGSIWLLKILGC 1220
VSC VSHVTGNKSL +E+N N+ +Y+ GSI L KI GC
Sbjct: 232 VSCFVSHVTGNKSLSIEMNPGHKSPLNWNIVYI-----ILSTLILFIIIGSILLFKICGC 286
Query: 1221 RKCKLKKTEPTPVVEEDEMQPYASYXEKNNPLYDTTTE 1334
RKCKL +TE T VVEEDEMQPYASY EKNNPLYDT ++
Sbjct: 287 RKCKLGRTETTTVVEEDEMQPYASYTEKNNPLYDTVSK 324
>ref|XP_545098.2| PREDICTED: similar to Cell surface glycoprotein OX2 receptor
precursor (CD200 cell surface glycoprotein receptor)
[Canis familiaris].
Length = 300
Score = 239 bits (610), Expect = 5e-63
Identities = 119/192 (61%), Positives = 137/192 (71%)
Frame = +3
Query: 537 AEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTD 716
A N SL V VDT A L+CP + V+V TW ++ RD C RAYR D+N+T CTD
Sbjct: 19 ARANTSLSVFVDTRAVLHCPNAT-SNVLVVTWSVIFRDNTSCIRAYRTDSNKTREKTCTD 77
Query: 717 ERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSEN 896
ERI W SR DQN AL+I PVAITH+GYY C+ + P+GNF G+HLQVLVPP+VTL EN
Sbjct: 78 ERISWDSRPDQNFALRINPVAITHEGYYTCEVITPDGNFCHGHHLQVLVPPKVTLSLGEN 137
Query: 897 GTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHV 1076
GT VC AVAGKPAAQISWTP GDC T + GN TVTV S C+W+ R V VSC VSHV
Sbjct: 138 GTTVCWAVAGKPAAQISWTPMGDCHTVEE-RLGNDTVTVQSTCHWEDRQVSEVSCFVSHV 196
Query: 1077 TGNKSLFLELNQ 1112
TGNKSL +ELNQ
Sbjct: 197 TGNKSLSIELNQ 208
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,725,158
Number of extensions: 1450283
Number of successful extensions: 4210
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4190
Number of HSP's successfully gapped: 2
Length of query: 473
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 366
Effective length of database: 15,307,552
Effective search space: 5602564032
Effective search space used: 5602564032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007894
(1421 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230475.1| cell surface glycoprotein CD200 receptor 1 [... 640 0.0
Alignment gi|XP_003132726.1| PREDICTED: cell surface glycoprotein CD200 r... 405 e-113
Alignment gi|XP_003130435.2| PREDICTED: hemicentin-1-like [Sus scrofa]. 54 2e-07
>ref|NP_001230475.1| cell surface glycoprotein CD200 receptor 1 [Sus scrofa].
Length = 362
Score = 640 bits (1651), Expect = 0.0
Identities = 316/362 (87%), Positives = 319/362 (88%), Gaps = 1/362 (0%)
Frame = +3
Query: 333 MPCTWVTSDXXXXXXXXXXXVAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYR 512
MPCTWVTSD VAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYR
Sbjct: 1 MPCTWVTSDLQLLLSLTLFLVAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYR 60
Query: 513 KQSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNE 692
KQSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNE
Sbjct: 61 KQSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNE 120
Query: 693 TTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPE 872
TTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPE
Sbjct: 121 TTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPE 180
Query: 873 VTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPN 1052
V LVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPN
Sbjct: 181 VALVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPN 240
Query: 1053 VSCTVSHVTGNKSLFLELNQVDNYKRMYLRXXXXXXXXXXXXXXXGSIWLLKILGCRKCK 1232
VSCTVSHVTGNKSLFLELNQVDNYKRMYLR GSIWLLKILGCRKCK
Sbjct: 241 VSCTVSHVTGNKSLFLELNQVDNYKRMYLRILYIIPPIFIILVIVGSIWLLKILGCRKCK 300
Query: 1233 LKKTEPTPVVEEDEMQPYASYXEKNNPLYDTTTE*RHLRC**K-*WDKSHTIYVFGISHX 1409
LKKTEPTPVVEEDEMQPYASY EKNNPLYDTT + + + HTIYVFGISH
Sbjct: 301 LKKTEPTPVVEEDEMQPYASYTEKNNPLYDTTNRVKTSQVLNEVDGINLHTIYVFGISHE 360
Query: 1410 DK 1415
DK
Sbjct: 361 DK 362
>ref|XP_003132726.1| PREDICTED: cell surface glycoprotein CD200 receptor 1-like [Sus
scrofa].
Length = 271
Score = 405 bits (1041), Expect = e-113
Identities = 190/191 (99%), Positives = 190/191 (99%)
Frame = +3
Query: 540 EVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDE 719
EVNISLPVLVDTTAELYCPPVLWTTVVVATWE VLRDKAPCFRAYRADTNETTSGNCTDE
Sbjct: 12 EVNISLPVLVDTTAELYCPPVLWTTVVVATWETVLRDKAPCFRAYRADTNETTSGNCTDE 71
Query: 720 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 899
RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG
Sbjct: 72 RIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENG 131
Query: 900 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 1079
TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT
Sbjct: 132 TVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVT 191
Query: 1080 GNKSLFLELNQ 1112
GNKSLFLELNQ
Sbjct: 192 GNKSLFLELNQ 202
>ref|XP_003130435.2| PREDICTED: hemicentin-1-like [Sus scrofa].
Length = 780
Score = 54.3 bits (129), Expect = 2e-07
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 9/160 (5%)
Frame = +3
Query: 657 PCFRAYRADTNETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFH 836
P F + + S + T ER R ++ L++ I G Y C G
Sbjct: 294 PVFSTSKLEVERVASQSYTHER---GGRHERGRTLRLMQTKIEDAGQYTCIVRNAAGEER 350
Query: 837 RGYHLQVLVPP---------EVTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPH 989
+ + L VLVPP +V + + +N T+ C+ V G P +I+W +G + E N H
Sbjct: 351 KTFGLSVLVPPHIVGENTLEDVKVKEKQNVTLTCE-VTGNPMPEITWQKDGQLLKEDNTH 409
Query: 990 GGNGTVTVWSMCYWKARHVPNVSCTVSHVTGNKSLFLELN 1109
+ + H +C S+ G+KS LN
Sbjct: 410 HLMSGGRFLQITNAQVSHTGRYTCLASNTAGDKSKSFSLN 449
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,368,756
Number of extensions: 901505
Number of successful extensions: 2596
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2590
Number of HSP's successfully gapped: 3
Length of query: 473
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 370
Effective length of database: 8,779,541
Effective search space: 3248430170
Effective search space used: 3248430170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007894
(1421 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067300.1| cell surface glycoprotein CD200 receptor 1 prec... 253 3e-67
Alignment gi|NP_795984.1| cell surface glycoprotein CD200 receptor 5 [Mus... 199 3e-51
Alignment gi|NP_996258.1| cell surface glycoprotein CD200 receptor 2 [Mus... 187 2e-47
Alignment gi|NP_997127.1| cell surface glycoprotein CD200 receptor 4 [Mus... 181 1e-45
Alignment gi|NP_001121604.1| cell surface glycoprotein CD200 receptor 3 i... 112 9e-25
Alignment gi|NP_083294.2| cell surface glycoprotein CD200 receptor 3 isof... 112 9e-25
Alignment gi|NP_001121605.1| cell surface glycoprotein CD200 receptor 3 i... 55 2e-07
Alignment gi|NP_081854.1| cell surface glycoprotein CD200 receptor 3 isof... 55 2e-07
>ref|NP_067300.1| cell surface glycoprotein CD200 receptor 1 precursor [Mus musculus].
Length = 326
Score = 253 bits (645), Expect = 3e-67
Identities = 138/285 (48%), Positives = 176/285 (61%), Gaps = 5/285 (1%)
Frame = +3
Query: 495 TSSTYRKQSTV----TPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPC 662
+S T + Q+T +PL +VN ++ V + T A L C + T V+ TW I LR C
Sbjct: 23 SSCTDKNQTTQNNSSSPLTQVNTTVSVQIGTKALLCCFSIPLTKAVLITWIIKLRGLPSC 82
Query: 663 FRAYRADTNETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRG 842
AY+ DT +T +C I W+S D +P LQI V + H+G Y C+ V P GNF +
Sbjct: 83 TIAYKVDT-KTNETSCLGRNITWASTPDHSPELQISAVTLQHEGTYTCETVTPEGNFEKN 141
Query: 843 YHLQVLVPPEVTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSM 1022
Y LQVLVPPEVT +N + VC+A+AGKPAAQISW+P+GDCVT H NGTVTV S
Sbjct: 142 YDLQVLVPPEVTYFPEKNRSAVCEAMAGKPAAQISWSPDGDCVTTSESH-SNGTVTVRST 200
Query: 1023 CYWKARHVPNVSCTVSHVTGNKSLFLELNQVDNYK-RMYLRXXXXXXXXXXXXXXXGSIW 1199
C+W+ +V +VSC VSH+TGN+SL +EL++ N R Y+ G I
Sbjct: 201 CHWEQNNVSDVSCIVSHLTGNQSLSIELSRGGNQSLRPYI---PYIIPSIIILIIIGCIC 257
Query: 1200 LLKILGCRKCKLKKTEPTPVVEEDEMQPYASYXEKNNPLYDTTTE 1334
LLKI G RKCKL K E T +EEDEMQPYASY EK+NPLYDT T+
Sbjct: 258 LLKISGFRKCKLPKLEATSAIEEDEMQPYASYTEKSNPLYDTVTK 302
>ref|NP_795984.1| cell surface glycoprotein CD200 receptor 5 [Mus musculus].
Length = 270
Score = 199 bits (507), Expect = 3e-51
Identities = 103/195 (52%), Positives = 126/195 (64%)
Frame = +3
Query: 528 TPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGN 707
+PL +VN ++ V + T A L C + T V+ TW I LRD C Y+ DT +T +
Sbjct: 38 SPLTQVNTTVSVQIGTKALLCCFSIPLTKAVLITWIIKLRDLPSCTILYKVDT-KTIETS 96
Query: 708 CTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQ 887
C D I W+S D +P LQI V + H+G Y + V P GNF R Y LQVLVPPEVT
Sbjct: 97 CLDRNITWASTPDHSPELQISAVTLQHEGTYTRETVTPEGNFGRVYDLQVLVPPEVTYFP 156
Query: 888 SENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTV 1067
+N T VC+A+AGKPAAQISWTP+GDCVT H NGTVTV S C+W+ +V VSC V
Sbjct: 157 GKNRTAVCEAMAGKPAAQISWTPDGDCVTTSESH-SNGTVTVRSTCHWEQNNVSAVSCIV 215
Query: 1068 SHVTGNKSLFLELNQ 1112
SH TGNKSLF+ELNQ
Sbjct: 216 SHSTGNKSLFIELNQ 230
>ref|NP_996258.1| cell surface glycoprotein CD200 receptor 2 [Mus musculus].
Length = 249
Score = 187 bits (474), Expect = 2e-47
Identities = 95/184 (51%), Positives = 117/184 (63%)
Frame = +3
Query: 561 VLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTDERIIWSSR 740
V + T A L C + T V+ TW I R + C AY+ +T ET C I W+S
Sbjct: 28 VQMGTKARLCCRSIPLTKAVLITWIIKPRGQPSCIMAYKVETKETNE-TCLGRNITWAST 86
Query: 741 LDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSENGTVVCKAV 920
D P LQI VA+ H+G Y C+ P GNFH+ Y LQVLVPPEVT EN T VC+A+
Sbjct: 87 PDHIPDLQISAVALQHEGNYLCEITTPEGNFHKVYDLQVLVPPEVTYFLGENRTAVCEAM 146
Query: 921 AGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVTGNKSLFL 1100
AGKPAAQISWTP+GDCVT+ H NGTVTV S C+W+ +V VSC VSH TGN+SL +
Sbjct: 147 AGKPAAQISWTPDGDCVTKSESH-SNGTVTVRSTCHWEQNNVSAVSCIVSHSTGNQSLSI 205
Query: 1101 ELNQ 1112
EL++
Sbjct: 206 ELSR 209
>ref|NP_997127.1| cell surface glycoprotein CD200 receptor 4 [Mus musculus].
Length = 270
Score = 181 bits (459), Expect = 1e-45
Identities = 98/195 (50%), Positives = 121/195 (62%), Gaps = 2/195 (1%)
Frame = +3
Query: 534 LAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRAD--TNETTSGN 707
L +VN ++ V +D A L C V+ TW I R C AY D TNET+
Sbjct: 40 LTQVNTTMSVQMDKKALLCCFSSPLINAVLITWIIKHRHLPSCTIAYNLDKKTNETS--- 96
Query: 708 CTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQ 887
C I W+S D +P LQI VA+ H+G Y C+ V P GN + Y LQVLVPPEVT
Sbjct: 97 CLGRNITWASTPDHSPELQISAVALQHEGTYTCEIVTPEGNLEKVYDLQVLVPPEVTYFP 156
Query: 888 SENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTV 1067
+N T VC+A+AGKPAAQISWTP+GDCVT+ H NGTVTV S C+W+ +V VSC V
Sbjct: 157 GKNRTAVCEAMAGKPAAQISWTPDGDCVTKSESH-SNGTVTVRSTCHWEQNNVSVVSCLV 215
Query: 1068 SHVTGNKSLFLELNQ 1112
SH TGN+SL +EL+Q
Sbjct: 216 SHSTGNQSLSIELSQ 230
>ref|NP_001121604.1| cell surface glycoprotein CD200 receptor 3 isoform 1 [Mus musculus].
Length = 278
Score = 112 bits (279), Expect = 9e-25
Identities = 67/196 (34%), Positives = 98/196 (50%)
Frame = +3
Query: 525 VTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSG 704
VT E+ + V + A+L+C P + WEI RD C YRA+ + +
Sbjct: 53 VTMEIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKK 112
Query: 705 NCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLV 884
CT+ Q+ L I +A+ HDG+Y C+ +G F + +Q V
Sbjct: 113 ICTERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQ---------V 163
Query: 885 QSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCT 1064
EN TVVC+A+A KPA QI WTP+ DCVT+ H N T+ V S C+ + + +V C
Sbjct: 164 PGENRTVVCEAIASKPAMQILWTPDEDCVTKSKSH--NDTMIVRSKCHREKNNGHSVFCF 221
Query: 1065 VSHVTGNKSLFLELNQ 1112
+SH+T N L +E N+
Sbjct: 222 ISHLTDNWILSMEQNR 237
>ref|NP_083294.2| cell surface glycoprotein CD200 receptor 3 isoform 3 [Mus musculus].
Length = 275
Score = 112 bits (279), Expect = 9e-25
Identities = 67/196 (34%), Positives = 98/196 (50%)
Frame = +3
Query: 525 VTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSG 704
VT E+ + V + A+L+C P + WEI RD C YRA+ + +
Sbjct: 53 VTMEIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKK 112
Query: 705 NCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLV 884
CT+ Q+ L I +A+ HDG+Y C+ +G F + +Q V
Sbjct: 113 ICTERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQ---------V 163
Query: 885 QSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCT 1064
EN TVVC+A+A KPA QI WTP+ DCVT+ H N T+ V S C+ + + +V C
Sbjct: 164 PGENRTVVCEAIASKPAMQILWTPDEDCVTKSKSH--NDTMIVRSKCHREKNNGHSVFCF 221
Query: 1065 VSHVTGNKSLFLELNQ 1112
+SH+T N L +E N+
Sbjct: 222 ISHLTDNWILSMEQNR 237
>ref|NP_001121605.1| cell surface glycoprotein CD200 receptor 3 isoform 2 [Mus
musculus].
Length = 205
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/111 (28%), Positives = 50/111 (45%)
Frame = +3
Query: 525 VTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSG 704
VT E+ + V + A+L+C P + WEI RD C YRA+ + +
Sbjct: 53 VTMEIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKK 112
Query: 705 NCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQV 857
CT+ Q+ L I +A+ HDG+Y C+ +G F + +QV
Sbjct: 113 ICTERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQV 163
>ref|NP_081854.1| cell surface glycoprotein CD200 receptor 3 isoform 4 [Mus
musculus].
Length = 202
Score = 54.7 bits (130), Expect = 2e-07
Identities = 32/111 (28%), Positives = 50/111 (45%)
Frame = +3
Query: 525 VTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSG 704
VT E+ + V + A+L+C P + WEI RD C YRA+ + +
Sbjct: 53 VTMEIEIITPVSVQIGIKAQLFCHPSPSKEATLRIWEITPRDWPSCRLPYRAELQQISKK 112
Query: 705 NCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQV 857
CT+ Q+ L I +A+ HDG+Y C+ +G F + +QV
Sbjct: 113 ICTERGTTRVPAHHQSSDLPIKSMALKHDGHYSCRIETTDGIFQERHSIQV 163
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,893,382
Number of extensions: 1228053
Number of successful extensions: 3758
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3722
Number of HSP's successfully gapped: 8
Length of query: 473
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 368
Effective length of database: 12,463,779
Effective search space: 4586670672
Effective search space used: 4586670672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007894
(1421 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_620161.1| cell surface glycoprotein CD200 receptor 1 isof... 340 2e-93
Alignment gi|NP_740750.1| cell surface glycoprotein CD200 receptor 1 isof... 327 1e-89
Alignment gi|NP_001186144.1| cell surface glycoprotein CD200 receptor 2 i... 232 6e-61
Alignment gi|NP_001008784.2| cell surface glycoprotein CD200 receptor 2 i... 232 6e-61
Alignment gi|NP_620385.1| cell surface glycoprotein CD200 receptor 1 isof... 157 2e-38
Alignment gi|NP_620386.1| cell surface glycoprotein CD200 receptor 1 isof... 145 1e-34
>ref|NP_620161.1| cell surface glycoprotein CD200 receptor 1 isoform a [Homo sapiens].
Length = 348
Score = 340 bits (872), Expect = 2e-93
Identities = 180/336 (53%), Positives = 215/336 (63%), Gaps = 2/336 (0%)
Frame = +3
Query: 333 MPCTWVTSDXXXXXXXXXXXVAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYR 512
M C W T++ VA EG NNS+M Q ++ ++LAS+ +
Sbjct: 1 MLCPWRTANLGLLLILTIFLVAE-----AEGAAQPNNSLMLQTSKENHALASSSLCMDEK 55
Query: 513 K--QSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADT 686
+ Q+ LAEVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +T
Sbjct: 56 QITQNYSKVLAEVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKET 115
Query: 687 NETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVP 866
NET NCTDERI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVLV
Sbjct: 116 NETKETNCTDERITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVLVT 175
Query: 867 PEVTLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHV 1046
PEVTL Q+ N T VCKAVAGKPAA ISW PEGDC T+Q + NGTVTV S C+W+ +V
Sbjct: 176 PEVTLFQNRNRTAVCKAVAGKPAAHISWIPEGDCATKQE-YWSNGTVTVKSTCHWEVHNV 234
Query: 1047 PNVSCTVSHVTGNKSLFLELNQVDNYKRMYLRXXXXXXXXXXXXXXXGSIWLLKILGCRK 1226
V+C VSH+TGNKSL++EL V K+ G IWLLK+ GCRK
Sbjct: 235 STVTCHVSHLTGNKSLYIELLPVPGAKKSAKLYIPYIILTIIILTIVGFIWLLKVNGCRK 294
Query: 1227 CKLKKTEPTPVVEEDEMQPYASYXEKNNPLYDTTTE 1334
KL KTE TPVVEEDEMQPYASY EKNNPLYDTT +
Sbjct: 295 YKLNKTESTPVVEEDEMQPYASYTEKNNPLYDTTNK 330
>ref|NP_740750.1| cell surface glycoprotein CD200 receptor 1 isoform d [Homo sapiens].
Length = 325
Score = 327 bits (839), Expect = 1e-89
Identities = 163/267 (61%), Positives = 187/267 (70%)
Frame = +3
Query: 534 LAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCT 713
LAEVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCT
Sbjct: 42 LAEVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCT 101
Query: 714 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVTLVQSE 893
DERI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVLV PEVTL Q+
Sbjct: 102 DERITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVLVTPEVTLFQNR 161
Query: 894 NGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSH 1073
N T VCKAVAGKPAA ISW PEGDC T+Q + NGTVTV S C+W+ +V V+C VSH
Sbjct: 162 NRTAVCKAVAGKPAAHISWIPEGDCATKQE-YWSNGTVTVKSTCHWEVHNVSTVTCHVSH 220
Query: 1074 VTGNKSLFLELNQVDNYKRMYLRXXXXXXXXXXXXXXXGSIWLLKILGCRKCKLKKTEPT 1253
+TGNKSL++EL V K+ G IWLLK+ GCRK KL KTE T
Sbjct: 221 LTGNKSLYIELLPVPGAKKSAKLYIPYIILTIIILTIVGFIWLLKVNGCRKYKLNKTEST 280
Query: 1254 PVVEEDEMQPYASYXEKNNPLYDTTTE 1334
PVVEEDEMQPYASY EKNNPLYDTT +
Sbjct: 281 PVVEEDEMQPYASYTEKNNPLYDTTNK 307
>ref|NP_001186144.1| cell surface glycoprotein CD200 receptor 2 isoform 2 [Homo sapiens].
Length = 250
Score = 232 bits (592), Expect = 6e-61
Identities = 117/198 (59%), Positives = 137/198 (69%)
Frame = +3
Query: 516 QSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNET 695
Q+ T AE NIS PVL+D A L CPP+ +++ TWEI+LR + C +AY+ +TNET
Sbjct: 8 QNYSTIFAEGNISQPVLMDINAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNET 67
Query: 696 TSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEV 875
NCT ERI W SR DQN LQI PV THDGYYR V P+GNFHRGYHLQVLV PEV
Sbjct: 68 KETNCTVERITWVSRPDQNSDLQIRPVDTTHDGYYRGIVVTPDGNFHRGYHLQVLVTPEV 127
Query: 876 TLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNV 1055
L QS N T VCKAV GKPAAQISW PEG + + + GNGTVTV S C W+ H V
Sbjct: 128 NLFQSRNITAVCKAVTGKPAAQISWIPEGSILATKQEYWGNGTVTVKSTCPWEG-HKSTV 186
Query: 1056 SCTVSHVTGNKSLFLELN 1109
+C VSH+TGNKSL ++LN
Sbjct: 187 TCHVSHLTGNKSLSVKLN 204
>ref|NP_001008784.2| cell surface glycoprotein CD200 receptor 2 isoform 1 [Homo sapiens].
Length = 271
Score = 232 bits (592), Expect = 6e-61
Identities = 117/198 (59%), Positives = 137/198 (69%)
Frame = +3
Query: 516 QSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNET 695
Q+ T AE NIS PVL+D A L CPP+ +++ TWEI+LR + C +AY+ +TNET
Sbjct: 29 QNYSTIFAEGNISQPVLMDINAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNET 88
Query: 696 TSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEV 875
NCT ERI W SR DQN LQI PV THDGYYR V P+GNFHRGYHLQVLV PEV
Sbjct: 89 KETNCTVERITWVSRPDQNSDLQIRPVDTTHDGYYRGIVVTPDGNFHRGYHLQVLVTPEV 148
Query: 876 TLVQSENGTVVCKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNV 1055
L QS N T VCKAV GKPAAQISW PEG + + + GNGTVTV S C W+ H V
Sbjct: 149 NLFQSRNITAVCKAVTGKPAAQISWIPEGSILATKQEYWGNGTVTVKSTCPWEG-HKSTV 207
Query: 1056 SCTVSHVTGNKSLFLELN 1109
+C VSH+TGNKSL ++LN
Sbjct: 208 TCHVSHLTGNKSLSVKLN 225
>ref|NP_620385.1| cell surface glycoprotein CD200 receptor 1 isoform b [Homo
sapiens].
Length = 188
Score = 157 bits (398), Expect = 2e-38
Identities = 85/178 (47%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Frame = +3
Query: 333 MPCTWVTSDXXXXXXXXXXXVAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYR 512
M C W T++ VA EG NNS+M Q ++ ++LAS+ +
Sbjct: 1 MLCPWRTANLGLLLILTIFLVAE-----AEGAAQPNNSLMLQTSKENHALASSSLCMDEK 55
Query: 513 K--QSTVTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADT 686
+ Q+ LAEVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +T
Sbjct: 56 QITQNYSKVLAEVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKET 115
Query: 687 NETTSGNCTDERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVL 860
NET NCTDERI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVL
Sbjct: 116 NETKETNCTDERITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVL 173
>ref|NP_620386.1| cell surface glycoprotein CD200 receptor 1 isoform c [Homo
sapiens].
Length = 165
Score = 145 bits (365), Expect = 1e-34
Identities = 68/109 (62%), Positives = 79/109 (72%)
Frame = +3
Query: 534 LAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCT 713
LAEVN S PV + T A L CPP+ +++ TWEI+LR + C +AY+ +TNET NCT
Sbjct: 42 LAEVNTSWPVKMATNAVLCCPPIALRNLIIITWEIILRGQPSCTKAYKKETNETKETNCT 101
Query: 714 DERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVL 860
DERI W SR DQN LQI VAITHDGYYRC V P+GNFHRGYHLQVL
Sbjct: 102 DERITWVSRPDQNSDLQIRTVAITHDGYYRCIMVTPDGNFHRGYHLQVL 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,933,372
Number of extensions: 1441543
Number of successful extensions: 4497
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4478
Number of HSP's successfully gapped: 6
Length of query: 473
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,802,980
Effective search space: 5432693660
Effective search space used: 5432693660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007894
(1421 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 793 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 793 bits (400), Expect = 0.0
Identities = 400/400 (100%)
Strand = Plus / Plus
Query: 1 tacagcagaagtgagaggaagaccaatgagctgaaagataactcagtcaatctgcttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156554463 tacagcagaagtgagaggaagaccaatgagctgaaagataactcagtcaatctgcttcct 156554522
Query: 61 ccgtctttggttcagtgcttcatacaggaaatctattgctgtgtcaagttccagagaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156554523 ccgtctttggttcagtgcttcatacaggaaatctattgctgtgtcaagttccagagaaga 156554582
Query: 121 gtttcttctgttccaagttactaatcaggctgaaacacatagaattgaaggaagggggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156554583 gtttcttctgttccaagttactaatcaggctgaaacacatagaattgaaggaagggggta 156554642
Query: 181 ggaggaaaagagtatcatgttgctaatgggctaagaggatccagcacttcctggagaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156554643 ggaggaaaagagtatcatgttgctaatgggctaagaggatccagcacttcctggagaagt 156554702
Query: 241 cgaccaaagaaagcctcaccatgtccatagctctttttacacctgtgtggaggaacagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156554703 cgaccaaagaaagcctcaccatgtccatagctctttttacacctgtgtggaggaacagtg 156554762
Query: 301 ttgagtgaaggtcagaaaataagaaaacagaaatgccctgcacttgggtaacttctgatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156554763 ttgagtgaaggtcagaaaataagaaaacagaaatgccctgcacttgggtaacttctgatc 156554822
Query: 361 ttcagctactactgagtttgactctcttcttagttgctgg 400
||||||||||||||||||||||||||||||||||||||||
Sbjct: 156554823 ttcagctactactgagtttgactctcttcttagttgctgg 156554862
Score = 634 bits (320), Expect = e-179
Identities = 320/320 (100%)
Strand = Plus / Plus
Query: 542 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581696 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 156581755
Query: 602 gctgtggacaactgtggtggtagcaacatgggaaatagtcctcagagacaaggccccctg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581756 gctgtggacaactgtggtggtagcaacatgggaaatagtcctcagagacaaggccccctg 156581815
Query: 662 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581816 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 156581875
Query: 722 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581876 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 156581935
Query: 782 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156581936 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 156581995
Query: 842 ctatcacctccaagtattag 861
||||||||||||||||||||
Sbjct: 156581996 ctatcacctccaagtattag 156582015
Score = 626 bits (316), Expect = e-177
Identities = 319/320 (99%)
Strand = Plus / Plus
Query: 542 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645289 agttaatatttcactacctgtactggtggatacaacggctgagctctattgccctcctgt 156645348
Query: 602 gctgtggacaactgtggtggtagcaacatgggaaatagtcctcagagacaaggccccctg 661
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 156645349 gctgtggacaactgtggtggtagcaacatgggaaacagtcctcagagacaaggccccctg 156645408
Query: 662 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645409 cttcagagcctacagggctgatacaaatgagaccacatcaggaaactgtactgatgagag 156645468
Query: 722 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645469 aataatctggtcctccagacttgaccagaatcctgcccttcagattggtccagtggccat 156645528
Query: 782 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645529 cactcatgatgggtattacaggtgtcaaaaggtagcaccaaatgggaatttccatcgtgg 156645588
Query: 842 ctatcacctccaagtattag 861
||||||||||||||||||||
Sbjct: 156645589 ctatcacctccaagtattag 156645608
Score = 504 bits (254), Expect = e-140
Identities = 254/254 (100%)
Strand = Plus / Plus
Query: 860 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtgtgcaaggcggt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582135 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtgtgcaaggcggt 156582194
Query: 920 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582195 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 156582254
Query: 980 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582255 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 156582314
Query: 1040 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156582315 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 156582374
Query: 1100 agagctgaatcaag 1113
||||||||||||||
Sbjct: 156582375 agagctgaatcaag 156582388
Score = 496 bits (250), Expect = e-137
Identities = 253/254 (99%)
Strand = Plus / Plus
Query: 860 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtgtgcaaggcggt 919
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 156645728 agtaccccctgaggtgaccctggttcaaagcgagaatggaactgtggtatgcaaggcggt 156645787
Query: 920 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645788 cgcagggaagccggctgctcagatttcctggacccctgagggggactgtgtcactgagca 156645847
Query: 980 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645848 aaaccctcacgggggcaatggcacagtgactgtctggagtatgtgctactggaaggcccg 156645907
Query: 1040 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156645908 tcatgtacctaatgtgtcctgcactgtctcccacgtgactggcaacaagagtctcttctt 156645967
Query: 1100 agagctgaatcaag 1113
||||||||||||||
Sbjct: 156645968 agagctgaatcaag 156645981
Score = 230 bits (116), Expect = 2e-57
Identities = 150/158 (94%), Gaps = 3/158 (1%)
Strand = Plus / Plus
Query: 1267 aggatgaaatgcagccctatgccagctacancgagaagaataatccactttacgatacca 1326
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 156592692 aggatgaaatgcagccctatgccagctacacggagaagaataatccactttacgatacca 156592751
Query: 1327 c-aacagagtgaagacatctcaggtgtt-aatgaaagtgatgggataaatct-catacta 1383
| |||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 156592752 caaacagagtgaagacatctcaggtgttaaatgaagttgatgggataaatctccatacta 156592811
Query: 1384 tatatgtttttggcatctctcacgangacaaatgaatc 1421
||||||||||||||||||||||||| ||||||||||||
Sbjct: 156592812 tatatgtttttggcatctctcacgaggacaaatgaatc 156592849
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1112 agttgataattacaaaagaatgtacttaagaattctatatatcatccctcctatttttat 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156590968 agttgataattacaaaagaatgtacttaagaattctatatatcatccctcctatttttat 156591027
Query: 1172 tatcttggtcatcgtgggatccatttggcttttgaaaatccttggctgcag 1222
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156591028 tatcttggtcatcgtgggatccatttggcttttgaaaatccttggctgcag 156591078
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 399 ggacgttcaagtgcaggaacggaaggtccttttacatcaaacaactcaataatgccacag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156579599 ggacgttcaagtgcaggaacggaaggtccttttacatcaaacaactcaataatgccacag 156579658
Query: 459 attcaccaggacaaatacagtttgg 483
|||||||||||||||||||||||||
Sbjct: 156579659 attcaccaggacaaatacagtttgg 156579683
Score = 75.8 bits (38), Expect = 6e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 483 gcttcaacaattacttcatctacatacagaaaacagagcactgtaa 528
|||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 156641453 gcttcaacaattacttcatctacagacagaaagcagagcactgtaa 156641498
Score = 61.9 bits (31), Expect = 9e-07
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 1218 tgcagaaaatgtaaattgnnnnnnncagaacctactccagttgtcgaggagg 1269
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 156591619 tgcagaaaatgtaaattgaaaaaaacagaacctactccagttgtcgaggagg 156591670
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,316,390
Number of extensions: 369
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 10
Length of query: 1421
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1400
Effective length of database: 2,808,413,156
Effective search space: 3931778418400
Effective search space used: 3931778418400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)