Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007900
(1060 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033608.1| sorting nexin-2 [Bos taurus]. 450 e-143
Alignment gi|NP_001039572.2| sorting nexin-1 [Bos taurus]. 261 2e-79
Alignment gi|NP_001157409.1| sorting nexin 7 [Bos taurus]. 91 2e-18
Alignment gi|NP_001193667.1| sorting nexin family member 30 [Bos taurus]. 91 2e-18
Alignment gi|NP_001073246.1| sorting nexin-3 [Bos taurus]. 72 1e-12
Alignment gi|NP_001096727.1| sorting nexin-12 [Bos taurus]. 67 3e-11
Alignment gi|NP_001029636.1| sorting nexin-5 [Bos taurus]. 65 8e-11
Alignment gi|NP_001039796.1| sorting nexin 6 [Bos taurus]. 59 7e-09
Alignment gi|NP_001070372.1| sorting nexin-11 [Bos taurus]. 57 2e-08
Alignment gi|NP_001073750.1| sorting nexin-4 [Bos taurus]. 57 3e-08
>ref|NP_001033608.1| sorting nexin-2 [Bos taurus].
Length = 519
Score = 450 bits (1157), Expect(2) = e-143
Identities = 242/296 (81%), Positives = 243/296 (82%)
Frame = +1
Query: 49 MAAEREPPPLGDGKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGTNSNG 228
MAAEREPPPLGDGKPT DI TNSNG
Sbjct: 1 MAAEREPPPLGDGKPTDFEELEDGEDLFTSTVSTLESSPSSPDPASFLAE--DISTNSNG 58
Query: 229 PKPAEVVLDDDREDLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRIESKSM 408
PKPAEV LDDDREDLFAEATEEVSLDSPEREPIL LIAPRIESKSM
Sbjct: 59 PKPAEVALDDDREDLFAEATEEVSLDSPEREPILSSETSPAVTPVTPTTLIAPRIESKSM 118
Query: 409 SAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF 588
SAPVIFDRSR+EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF
Sbjct: 119 SAPVIFDRSRDEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF 178
Query: 589 SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA 768
SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA
Sbjct: 179 SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA 238
Query: 769 LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 936
LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK
Sbjct: 239 LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 294
Score = 77.8 bits (190), Expect(2) = e-143
Identities = 36/42 (85%), Positives = 39/42 (92%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESDAWFEEKQQQFEN DQQL+KL SVEALVCHRK
Sbjct: 294 KMTIKMNESDAWFEEKQQQFENQDQQLRKLHASVEALVCHRK 335
>ref|NP_001039572.2| sorting nexin-1 [Bos taurus].
Length = 522
Score = 261 bits (668), Expect(2) = 2e-79
Identities = 138/242 (57%), Positives = 171/242 (70%)
Frame = +1
Query: 211 GTNSNGPKPAEVVLDDDREDLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPR 390
G+ NG + D + +DLFA+AT E+SLDS + + P
Sbjct: 71 GSKENGIHEEQ---DQEPQDLFADATVELSLDSTQNNQ---------KKVPAKTLISLPP 118
Query: 391 IESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSM 570
E+ + S P S EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL M
Sbjct: 119 QEATNSSKP---QPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPM 175
Query: 571 FSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFV 750
F F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+
Sbjct: 176 FRSKHFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFL 235
Query: 751 EKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
EKRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV
Sbjct: 236 EKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAV 295
Query: 931 NK 936
+K
Sbjct: 296 SK 297
Score = 53.5 bits (127), Expect(2) = 2e-79
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 297 KMTINMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338
>ref|NP_001157409.1| sorting nexin 7 [Bos taurus].
Length = 451
Score = 90.9 bits (224), Expect = 2e-18
Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+++ E D+ D+ I V +PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 84 QVKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLW 143
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 144 LKEKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 195
Query: 802 PTLLQDPDLRQFL--ESSELPRAVNTQALSGAGILRMVNKAADAV 930
PTL + D + FL ++SE ++ G G+L + ++ AV
Sbjct: 196 PTLTFNEDFKIFLTAQASEF----SSHKKQGPGLLSRMGQSVRAV 236
>ref|NP_001193667.1| sorting nexin family member 30 [Bos taurus].
Length = 437
Score = 90.9 bits (224), Expect = 2e-18
Identities = 55/166 (33%), Positives = 88/166 (53%)
Frame = +1
Query: 433 SREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSD 612
+R +++++ +G+ D+ + V DP+K M Y+ YR+TTK++ F E+SV+RR+ D
Sbjct: 76 NRLQLDDDMDGETRDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQD 135
Query: 613 FLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRT 792
F L +KL +++PP PEK +V G D S EFVE RR AL+++L+R
Sbjct: 136 FDWLRNKLEES--QPTHLIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRI 187
Query: 793 VKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
HP L + FL + +L N G +L V ++ V
Sbjct: 188 TDHPVLSFNEHFNVFLTAKDL----NAHKKQGMALLTRVGESVKHV 229
>ref|NP_001073246.1| sorting nexin-3 [Bos taurus].
Length = 162
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/129 (30%), Positives = 68/129 (52%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 85
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
Query: 838 LESSELPRA 864
L+ + ++
Sbjct: 145 LQDEIIDKS 153
>ref|NP_001096727.1| sorting nexin-12 [Bos taurus].
Length = 162
Score = 67.0 bits (162), Expect = 3e-11
Identities = 39/128 (30%), Positives = 64/128 (50%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI + +P+ VG G + Y V +T+L +F E V+RR+SDF L ++L
Sbjct: 30 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DS 86
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K++ + G E F+E+RR LE+++ + HP + L F
Sbjct: 87 KIVVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMF 145
Query: 838 LESSELPR 861
L+ + R
Sbjct: 146 LQEEAIDR 153
>ref|NP_001029636.1| sorting nexin-5 [Bos taurus].
Length = 404
Score = 65.5 bits (158), Expect = 8e-11
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Frame = +1
Query: 475 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
DI +S+ +KV + V TKT+L F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDY 85
Query: 655 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 777
G I+PPAP K M K+ G+ + EF + ++ ++ E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEV 145
Query: 778 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAV 930
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEV 197
>ref|NP_001039796.1| sorting nexin 6 [Bos taurus].
Length = 244
Score = 58.9 bits (141), Expect = 7e-09
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Frame = +1
Query: 427 DRSREEIEEEANGDV---FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVK 597
DR + I + D DI +S+ +KV + V TK+SL F ++EFSV
Sbjct: 16 DRGLKAINVDLQSDAALQVDISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVV 67
Query: 598 RRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRA 765
R+ +F+ LH + GYI+PPAP + ++ K+ K E S + E K +
Sbjct: 68 RQHEEFIWLHDSFIENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQ 127
Query: 766 ALER---------------YLQRTVKHPTLLQDPDLRQFLESSE 852
LE +L R HP L +D + FLE ++
Sbjct: 128 ELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYNQ 171
>ref|NP_001070372.1| sorting nexin-11 [Bos taurus].
Length = 270
Score = 57.4 bits (137), Expect = 2e-08
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGM-NAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
I + V DP +G N+Y+ Y++ T+ F+ V+RR+ +F+ L +L +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQR---N 73
Query: 655 VGYI-VPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLR 831
G + VP P KS SS EF+EKRR L+ +L++ ++ LL D L
Sbjct: 74 AGLVPVPELPGKSTFF----------GSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123
Query: 832 QFLES 846
FL+S
Sbjct: 124 LFLQS 128
>ref|NP_001073750.1| sorting nexin-4 [Bos taurus].
Length = 450
Score = 57.0 bits (136), Expect = 3e-08
Identities = 69/231 (29%), Positives = 93/231 (40%), Gaps = 29/231 (12%)
Frame = +1
Query: 454 EANGDVFDIEIGVSDPEKVGDGMNA------YMAYRVTTKTSLSMFSKSEF--SVKRRFS 609
E N + IEI VS+ EK G NA Y AY + T++ +S S+ RR+S
Sbjct: 50 ENNFSLKKIEISVSEAEK-RTGRNAMNMQETYTAYLIETRSVEHNDGQSVLTDSLWRRYS 108
Query: 610 DFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQR 789
+F L + L Y H+ +VPP PEK + D+ +FVE+RR LE +L R
Sbjct: 109 EFELLRNYLLVYYPHI--VVPPLPEKRAEFVWHKL--SADNMDPDFVERRRIGLENFLLR 164
Query: 790 TVKHPTLLQDPDLRQFL-ESSELPRAVNTQA--LSGAGILRMVNKAADAVNK*QSR*MNR 960
HP L +D FL + VN L L+ +N N R
Sbjct: 165 VASHPILCRDKIFYLFLTQEGNWKETVNETGFQLKADSRLKALNATFRVKNP-----DKR 219
Query: 961 MHGLKKSSSNLKIWISNL------------------RNFHAVLKPWSVIEK 1059
LK S L+ IS+L N+ V WS IEK
Sbjct: 220 FIELKHYSDELQSVISHLLRVRARVADRLYGVYKVHGNYGRVFSEWSAIEK 270
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,008,873
Number of extensions: 684329
Number of successful extensions: 2193
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2176
Number of HSP's successfully gapped: 15
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007900
(1060 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531886.2| PREDICTED: similar to sorting nexin 2 isoform 1... 321 e-105
Alignment gi|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c... 263 2e-70
Alignment gi|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1... 263 2e-70
Alignment gi|XP_859551.1| PREDICTED: similar to Sorting nexin-2 isoform 3... 243 2e-64
Alignment gi|XP_865581.1| PREDICTED: similar to sorting nexin 1 isoform b... 219 3e-57
Alignment gi|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis fa... 91 2e-18
Alignment gi|XP_538794.2| PREDICTED: similar to sorting nexin 7 (predicte... 91 2e-18
Alignment gi|XP_855006.1| PREDICTED: similar to sorting nexin 3 [Canis fa... 68 1e-11
Alignment gi|XP_848727.1| PREDICTED: similar to sorting nexin 12 isoform ... 67 3e-11
Alignment gi|XP_542877.2| PREDICTED: similar to Sorting nexin-5 [Canis fa... 65 8e-11
>ref|XP_531886.2| PREDICTED: similar to sorting nexin 2 isoform 1 [Canis familiaris].
Length = 398
Score = 321 bits (822), Expect(2) = e-105
Identities = 164/165 (99%), Positives = 165/165 (100%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+IEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG
Sbjct: 9 QIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 68
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH
Sbjct: 69 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 128
Query: 802 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 936
PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK
Sbjct: 129 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 173
Score = 80.1 bits (196), Expect(2) = e-105
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESDAWFEEKQQQFENLDQQL+KL SVEALVCHRK
Sbjct: 173 KMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRK 214
>ref|XP_865548.1| PREDICTED: similar to sorting nexin 1 isoform c isoform 2 [Canis
familiaris].
Length = 473
Score = 263 bits (673), Expect = 2e-70
Identities = 144/275 (52%), Positives = 185/275 (67%), Gaps = 2/275 (0%)
Frame = +1
Query: 220 SNGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRI 393
+NG K + + D+E DLFA+AT E+SLDS + + P
Sbjct: 68 NNGSKENGIHEEQDQEPQDLFADATVELSLDSSQNNQ---------KKVPAKTLISLPPQ 118
Query: 394 ESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMF 573
E+ + S P S EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL MF
Sbjct: 119 EATNSSKP---QPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMF 175
Query: 574 SKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVE 753
+F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+E
Sbjct: 176 RSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 235
Query: 754 KRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN 933
KRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV+
Sbjct: 236 KRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVS 295
Query: 934 K*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
K + ++ ++ LR HAV++
Sbjct: 296 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 330
Score = 53.9 bits (128), Expect = 3e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 296 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 337
>ref|XP_535509.2| PREDICTED: similar to Sorting nexin-1 isoform 1 [Canis familiaris].
Length = 521
Score = 263 bits (673), Expect = 2e-70
Identities = 144/275 (52%), Positives = 185/275 (67%), Gaps = 2/275 (0%)
Frame = +1
Query: 220 SNGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRI 393
+NG K + + D+E DLFA+AT E+SLDS + + P
Sbjct: 68 NNGSKENGIHEEQDQEPQDLFADATVELSLDSSQNNQ---------KKVPAKTLISLPPQ 118
Query: 394 ESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMF 573
E+ + S P S EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL MF
Sbjct: 119 EATNSSKP---QPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMF 175
Query: 574 SKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVE 753
+F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+E
Sbjct: 176 RSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 235
Query: 754 KRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN 933
KRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV+
Sbjct: 236 KRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVS 295
Query: 934 K*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
K + ++ ++ LR HAV++
Sbjct: 296 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 330
Score = 53.9 bits (128), Expect = 3e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 296 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 337
>ref|XP_859551.1| PREDICTED: similar to Sorting nexin-2 isoform 3 [Canis familiaris].
Length = 124
Score = 243 bits (621), Expect = 2e-64
Identities = 124/124 (100%), Positives = 124/124 (100%)
Frame = +1
Query: 406 MSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSE 585
MSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSE
Sbjct: 1 MSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSE 60
Query: 586 FSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRA 765
FSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRA
Sbjct: 61 FSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRA 120
Query: 766 ALER 777
ALER
Sbjct: 121 ALER 124
>ref|XP_865581.1| PREDICTED: similar to sorting nexin 1 isoform b isoform 4 [Canis
familiaris].
Length = 456
Score = 219 bits (558), Expect = 3e-57
Identities = 117/218 (53%), Positives = 148/218 (67%)
Frame = +1
Query: 385 PRIESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSL 564
P+ + S P+ I EE + + D+ GDGMNAY+AY+VTT+TSL
Sbjct: 56 PQSPKRIASLPINNGSKENGIHEEQDQEPQDLF--------AGDGMNAYVAYKVTTQTSL 107
Query: 565 SMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTE 744
MF +F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS E
Sbjct: 108 PMFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE 167
Query: 745 FVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAAD 924
F+EKRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA D
Sbjct: 168 FLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATD 227
Query: 925 AVNK*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
AV+K + ++ ++ LR HAV++
Sbjct: 228 AVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 265
Score = 53.9 bits (128), Expect = 3e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 231 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 272
>ref|XP_547269.2| PREDICTED: similar to Sorting nexin-7 [Canis familiaris].
Length = 458
Score = 90.9 bits (224), Expect = 2e-18
Identities = 56/163 (34%), Positives = 85/163 (52%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+++ E D+ D+ I V +PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 88 QVKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLW 147
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 148 LKGKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 199
Query: 802 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
PTL + D + FL + +++ G G+L + + AV
Sbjct: 200 PTLTFNEDFKVFLTAQAW--ELSSHKKQGPGLLSRMGQTVRAV 240
>ref|XP_538794.2| PREDICTED: similar to sorting nexin 7 (predicted) [Canis
familiaris].
Length = 497
Score = 90.5 bits (223), Expect = 2e-18
Identities = 55/166 (33%), Positives = 88/166 (53%)
Frame = +1
Query: 433 SREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSD 612
+R +++++ +G+ D+ + V DP+K M Y+ YR+TTK++ F E+SV+RR+ D
Sbjct: 59 NRLQLDDDIDGETRDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQD 118
Query: 613 FLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRT 792
F L +KL +++PP PEK +V G D S EFVE RR AL+++L+R
Sbjct: 119 FDWLRNKLEES--QPTHLIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRI 170
Query: 793 VKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
HP L + FL + +L N G +L V ++ V
Sbjct: 171 TDHPVLSFNEHFNVFLTAKDL----NAYKKQGMALLTRVGESVKHV 212
>ref|XP_855006.1| PREDICTED: similar to sorting nexin 3 [Canis familiaris].
Length = 162
Score = 68.2 bits (165), Expect = 1e-11
Identities = 37/129 (28%), Positives = 67/129 (51%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+E+ VS+P+ VG + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 29 LEMDVSNPQTVGFARGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 85
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
Query: 838 LESSELPRA 864
L+ + ++
Sbjct: 145 LQDEIIDKS 153
>ref|XP_848727.1| PREDICTED: similar to sorting nexin 12 isoform 1 [Canis
familiaris].
Length = 162
Score = 67.0 bits (162), Expect = 3e-11
Identities = 39/128 (30%), Positives = 64/128 (50%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI + +P+ VG G + Y V +T+L +F E V+RR+SDF L ++L
Sbjct: 30 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DS 86
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K++ + G E F+E+RR LE+++ + HP + L F
Sbjct: 87 KIVVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMF 145
Query: 838 LESSELPR 861
L+ + R
Sbjct: 146 LQEEAIDR 153
>ref|XP_542877.2| PREDICTED: similar to Sorting nexin-5 [Canis familiaris].
Length = 404
Score = 65.5 bits (158), Expect = 8e-11
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Frame = +1
Query: 475 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
DI +S+ +KV + V TKT+L F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETADY 85
Query: 655 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 777
G I+PPAP K M K+ G+ + EF + ++ ++ E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEV 145
Query: 778 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAV 930
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEV 197
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,421,705
Number of extensions: 700413
Number of successful extensions: 2292
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2272
Number of HSP's successfully gapped: 18
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007900
(1060 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa]. 446 e-143
Alignment gi|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Su... 261 6e-70
Alignment gi|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus sc... 261 6e-70
Alignment gi|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus sc... 261 6e-70
Alignment gi|XP_003353367.1| PREDICTED: sorting nexin-1 isoform 2 [Sus sc... 218 3e-57
Alignment gi|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa]. 90 2e-18
Alignment gi|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa]. 90 2e-18
Alignment gi|XP_001928105.1| PREDICTED: sorting nexin-12 [Sus scrofa]. 67 2e-11
Alignment gi|XP_003122575.1| PREDICTED: sorting nexin-32 [Sus scrofa]. 63 2e-10
Alignment gi|XP_003131585.1| PREDICTED: sorting nexin-11-like isoform 2 [... 57 1e-08
>ref|XP_003360918.1| PREDICTED: sorting nexin-2 [Sus scrofa].
Length = 559
Score = 446 bits (1146), Expect(2) = e-143
Identities = 238/289 (82%), Positives = 238/289 (82%)
Frame = +1
Query: 70 PPLGDGKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGTNSNGPKPAEVV 249
PPLGDGKPT DIGTNSNGPKPAEVV
Sbjct: 46 PPLGDGKPTDFEELEDGEDLFTSTVSTLESSPSSPEPAAASLLAEDIGTNSNGPKPAEVV 105
Query: 250 LDDDREDLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRIESKSMSAPVIFD 429
LDDDREDLFAEATEEVSLDSPEREPIL LIAPRIESKSMSAPVIFD
Sbjct: 106 LDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSAPVIFD 165
Query: 430 RSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFS 609
RSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFS
Sbjct: 166 RSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFS 225
Query: 610 DFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQR 789
DFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQR
Sbjct: 226 DFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQR 285
Query: 790 TVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 936
TVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK
Sbjct: 286 TVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 334
Score = 80.1 bits (196), Expect(2) = e-143
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESDAWFEEKQQQFENLDQQL+KL SVEALVCHRK
Sbjct: 334 KMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRK 375
>ref|XP_003362220.1| PREDICTED: sorting nexin-1-like, partial [Sus scrofa].
Length = 379
Score = 261 bits (666), Expect = 6e-70
Identities = 143/275 (52%), Positives = 184/275 (66%), Gaps = 2/275 (0%)
Frame = +1
Query: 220 SNGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRI 393
+NG K + + D+E DLFA+AT E+SLDS + + P
Sbjct: 16 NNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQ---------KKLPAKTLISLPPQ 66
Query: 394 ESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMF 573
E+ + S S EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL MF
Sbjct: 67 EATNSSK---LQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMF 123
Query: 574 SKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVE 753
+FSVKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+E
Sbjct: 124 RSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 183
Query: 754 KRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN 933
KRRAALERYLQR V HPT++QDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV+
Sbjct: 184 KRRAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVS 243
Query: 934 K*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
K + ++ ++ LR HAV++
Sbjct: 244 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 278
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 244 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 285
>ref|XP_003353368.1| PREDICTED: sorting nexin-1 isoform 3 [Sus scrofa].
Length = 474
Score = 261 bits (666), Expect = 6e-70
Identities = 143/275 (52%), Positives = 184/275 (66%), Gaps = 2/275 (0%)
Frame = +1
Query: 220 SNGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRI 393
+NG K + + D+E DLFA+AT E+SLDS + + P
Sbjct: 69 NNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQ---------KKLPAKTLISLPPQ 119
Query: 394 ESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMF 573
E+ + S S EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL MF
Sbjct: 120 EATNSSK---LQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMF 176
Query: 574 SKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVE 753
+FSVKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+E
Sbjct: 177 RSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 236
Query: 754 KRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN 933
KRRAALERYLQR V HPT++QDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV+
Sbjct: 237 KRRAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVS 296
Query: 934 K*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
K + ++ ++ LR HAV++
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 331
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338
>ref|XP_001928534.3| PREDICTED: sorting nexin-1 isoform 1 [Sus scrofa].
Length = 522
Score = 261 bits (666), Expect = 6e-70
Identities = 143/275 (52%), Positives = 184/275 (66%), Gaps = 2/275 (0%)
Frame = +1
Query: 220 SNGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRI 393
+NG K + + D+E DLFA+AT E+SLDS + + P
Sbjct: 69 NNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQ---------KKLPAKTLISLPPQ 119
Query: 394 ESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMF 573
E+ + S S EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL MF
Sbjct: 120 EATNSSK---LQPSYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMF 176
Query: 574 SKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVE 753
+FSVKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+E
Sbjct: 177 RSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 236
Query: 754 KRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN 933
KRRAALERYLQR V HPT++QDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV+
Sbjct: 237 KRRAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVS 296
Query: 934 K*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
K + ++ ++ LR HAV++
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 331
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338
>ref|XP_003353367.1| PREDICTED: sorting nexin-1 isoform 2 [Sus scrofa].
Length = 457
Score = 218 bits (556), Expect = 3e-57
Identities = 110/176 (62%), Positives = 135/176 (76%)
Frame = +1
Query: 511 GDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKS 690
GDGMNAY+AY+VTT+TSL MF +FSVKRRFSDFLGL+ KL+ K+ G+IVPP PEKS
Sbjct: 91 GDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKS 150
Query: 691 IVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVN 870
++GMTKVKVGKEDSSS EF+EKRRAALERYLQR V HPT++QDPD+R+FLE ELPRAV
Sbjct: 151 LIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREFLEKEELPRAVG 210
Query: 871 TQALSGAGILRMVNKAADAVNK*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
TQ LSGAG+L+M NKA DAV+K + ++ ++ LR HAV++
Sbjct: 211 TQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 266
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 232 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 273
>ref|XP_003361225.1| PREDICTED: sorting nexin-7-like [Sus scrofa].
Length = 446
Score = 89.7 bits (221), Expect = 2e-18
Identities = 55/163 (33%), Positives = 85/163 (52%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+++ E D+ D+ I V +PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 77 QVKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLW 136
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 137 LKEKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 188
Query: 802 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
PTL + D + FL + +++ G G+L + + +V
Sbjct: 189 PTLTFNEDFKVFLTAQAW--ELSSHKKQGPGLLSRMGQTVRSV 229
>ref|XP_003125946.2| PREDICTED: sorting nexin-7-like [Sus scrofa].
Length = 583
Score = 89.7 bits (221), Expect = 2e-18
Identities = 55/163 (33%), Positives = 85/163 (52%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+++ E D+ D+ I V +PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 210 QVKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLW 269
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 270 LKEKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 321
Query: 802 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
PTL + D + FL + +++ G G+L + + +V
Sbjct: 322 PTLTFNEDFKVFLTAQAW--ELSSHKKQGPGLLSRMGQTVRSV 362
>ref|XP_001928105.1| PREDICTED: sorting nexin-12 [Sus scrofa].
Length = 162
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/128 (30%), Positives = 64/128 (50%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI + +P+ VG G + Y V +T+L +F E V+RR+SDF L ++L
Sbjct: 30 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DS 86
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K++ + G E F+E+RR LE+++ + HP + L F
Sbjct: 87 KIVVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMF 145
Query: 838 LESSELPR 861
L+ + R
Sbjct: 146 LQEEAIDR 153
>ref|XP_003122575.1| PREDICTED: sorting nexin-32 [Sus scrofa].
Length = 403
Score = 63.2 bits (152), Expect = 2e-10
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Frame = +1
Query: 475 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
+I VS+ +KV + V TK+ L F+++EFSV R +F+ LH +
Sbjct: 29 EISDAVSERDKV--------KFTVQTKSCLPHFAQTEFSVVRLHEEFIWLHDAYVENEDY 80
Query: 655 VGYIVPPAPEKSIVGMTK---VKVGKEDSSST--EFVEKRR--------------AALER 777
G I+PPAP + ++ K+G+ DSS T EF + ++ A E
Sbjct: 81 AGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEV 140
Query: 778 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAAD 924
+LQR HPTL +D + FLE + R N + L G G LR + K+AD
Sbjct: 141 FLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLG-GFLRNIVKSAD 190
>ref|XP_003131585.1| PREDICTED: sorting nexin-11-like isoform 2 [Sus scrofa].
Length = 270
Score = 57.4 bits (137), Expect = 1e-08
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 2/125 (1%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGM-NAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
I + V DP +G N+Y+ Y++ T+ F+ V+RR+ +F+ L +L +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQR---N 73
Query: 655 VGYI-VPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLR 831
G + VP P KS SS EF+EKRR L+ +L++ ++ LL D L
Sbjct: 74 AGLVPVPELPGKSTFF----------GSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123
Query: 832 QFLES 846
FL+S
Sbjct: 124 LFLQS 128
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,532,128
Number of extensions: 433636
Number of successful extensions: 1398
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1381
Number of HSP's successfully gapped: 16
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007900
(1060 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080662.1| sorting nexin-2 [Mus musculus]. 436 e-139
Alignment gi|NP_062701.2| sorting nexin-1 [Mus musculus]. 258 4e-69
Alignment gi|NP_766056.1| sorting nexin-30 [Mus musculus]. 91 2e-18
Alignment gi|NP_001177085.1| sorting nexin-7 isoform 2 [Mus musculus]. 91 2e-18
Alignment gi|NP_083931.2| sorting nexin-7 isoform 1 [Mus musculus]. 91 2e-18
Alignment gi|NP_059500.2| sorting nexin-3 [Mus musculus]. 72 1e-12
Alignment gi|NP_001186117.1| sorting nexin-5 [Mus musculus]. 67 2e-11
Alignment gi|NP_077187.1| sorting nexin-5 [Mus musculus]. 67 2e-11
Alignment gi|NP_001103781.1| sorting nexin-12 isoform 2 [Mus musculus]. 67 2e-11
Alignment gi|NP_001103780.1| sorting nexin-12 isoform 1 [Mus musculus]. 67 2e-11
>ref|NP_080662.1| sorting nexin-2 [Mus musculus].
Length = 519
Score = 436 bits (1120), Expect(2) = e-139
Identities = 236/296 (79%), Positives = 239/296 (80%)
Frame = +1
Query: 49 MAAEREPPPLGDGKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGTNSNG 228
MAAEREPPPLGD KPT DI NSNG
Sbjct: 1 MAAEREPPPLGDVKPTDFEELEDGEDLFTSTVSTLESSPSSPEPASLPAE--DISANSNG 58
Query: 229 PKPAEVVLDDDREDLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRIESKSM 408
KP EVVLDDDREDLFAEATEEVSLDSPERE IL LIAPRIESKS+
Sbjct: 59 SKPVEVVLDDDREDLFAEATEEVSLDSPERELILSSEPSPAVTPVTPTTLIAPRIESKSI 118
Query: 409 SAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF 588
SAPVIFDRSR+EIEEEANGD+FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF
Sbjct: 119 SAPVIFDRSRDEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF 178
Query: 589 SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA 768
SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA
Sbjct: 179 SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA 238
Query: 769 LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 936
LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK
Sbjct: 239 LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 294
Score = 80.1 bits (196), Expect(2) = e-139
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESDAWFEEKQQQFENLDQQL+KL SVEALVCHRK
Sbjct: 294 KMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRK 335
>ref|NP_062701.2| sorting nexin-1 [Mus musculus].
Length = 521
Score = 258 bits (660), Expect = 4e-69
Identities = 145/274 (52%), Positives = 183/274 (66%), Gaps = 2/274 (0%)
Frame = +1
Query: 223 NGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRIE 396
NG K + D D+E DLFA+AT E+SLDS + P E
Sbjct: 70 NGSKENGIHEDQDQEPQDLFADATVELSLDSTQNNQKTMPGKTLTSH---------PPQE 120
Query: 397 SKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFS 576
+ + P S EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL MF
Sbjct: 121 ATNSPKP---QPSYEELEEEQE-DQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFR 176
Query: 577 KSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEK 756
+F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+EK
Sbjct: 177 SRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEK 236
Query: 757 RRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 936
RRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQALSGAG+L+M NKA DAV+K
Sbjct: 237 RRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQALSGAGLLKMFNKATDAVSK 296
Query: 937 *QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
+ ++ ++ LR HAV++
Sbjct: 297 MTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 330
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 296 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 337
>ref|NP_766056.1| sorting nexin-30 [Mus musculus].
Length = 437
Score = 90.5 bits (223), Expect = 2e-18
Identities = 55/166 (33%), Positives = 88/166 (53%)
Frame = +1
Query: 433 SREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSD 612
+R +++++ +G+ D+ + V DP+K M Y+ YR+TTK++ F E+SV+RR+ D
Sbjct: 76 NRLQLDDDIDGEARDLFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQD 135
Query: 613 FLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRT 792
F L +KL +++PP PEK +V G D S EFVE RR AL+++L+R
Sbjct: 136 FDWLRNKLEES--QPTHLIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRI 187
Query: 793 VKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
HP L + FL + +L N G +L V ++ V
Sbjct: 188 TDHPVLSFNEHFNVFLTAKDL----NAYKKQGIALLSRVGESVKHV 229
>ref|NP_001177085.1| sorting nexin-7 isoform 2 [Mus musculus].
Length = 394
Score = 90.5 bits (223), Expect = 2e-18
Identities = 57/163 (34%), Positives = 84/163 (51%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+I+ E D+ D+ I V PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 78 QIKFEDGPDLKDLFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLW 137
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 138 LKGKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 189
Query: 802 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
PTL + D + FL + +++ G G+L + + AV
Sbjct: 190 PTLTFNEDFKVFLTAQ--AEELSSYKKQGPGLLSRMGQTVRAV 230
>ref|NP_083931.2| sorting nexin-7 isoform 1 [Mus musculus].
Length = 445
Score = 90.5 bits (223), Expect = 2e-18
Identities = 57/163 (34%), Positives = 84/163 (51%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+I+ E D+ D+ I V PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 78 QIKFEDGPDLKDLFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLW 137
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 138 LKGKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 189
Query: 802 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
PTL + D + FL + +++ G G+L + + AV
Sbjct: 190 PTLTFNEDFKVFLTAQ--AEELSSYKKQGPGLLSRMGQTVRAV 230
>ref|NP_059500.2| sorting nexin-3 [Mus musculus].
Length = 162
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/129 (30%), Positives = 68/129 (52%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 85
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
Query: 838 LESSELPRA 864
L+ + ++
Sbjct: 145 LQDEIIDKS 153
>ref|NP_001186117.1| sorting nexin-5 [Mus musculus].
Length = 404
Score = 67.4 bits (163), Expect = 2e-11
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Frame = +1
Query: 475 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
DI +S+ +KV + V TKT+LS F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLSTFQSPEFSVTRQHEDFVWLHDTLTETTDY 85
Query: 655 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 777
G I+PPAP K M K+ G+ + EF + ++ + E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSTHEV 145
Query: 778 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAV 930
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEV 197
>ref|NP_077187.1| sorting nexin-5 [Mus musculus].
Length = 404
Score = 67.4 bits (163), Expect = 2e-11
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Frame = +1
Query: 475 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
DI +S+ +KV + V TKT+LS F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLSTFQSPEFSVTRQHEDFVWLHDTLTETTDY 85
Query: 655 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 777
G I+PPAP K M K+ G+ + EF + ++ + E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSTHEV 145
Query: 778 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAV 930
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEV 197
>ref|NP_001103781.1| sorting nexin-12 isoform 2 [Mus musculus].
Length = 170
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/128 (30%), Positives = 64/128 (50%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI + +P+ VG G + Y V +T+L +F E V+RR+SDF L ++L
Sbjct: 30 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DS 86
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K++ + G E F+E+RR LE+++ + HP + L F
Sbjct: 87 KIVVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMF 145
Query: 838 LESSELPR 861
L+ + R
Sbjct: 146 LQEEAIDR 153
>ref|NP_001103780.1| sorting nexin-12 isoform 1 [Mus musculus].
Length = 162
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/128 (30%), Positives = 64/128 (50%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI + +P+ VG G + Y V +T+L +F E V+RR+SDF L ++L
Sbjct: 30 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DS 86
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K++ + G E F+E+RR LE+++ + HP + L F
Sbjct: 87 KIVVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMF 145
Query: 838 LESSELPR 861
L+ + R
Sbjct: 146 LQEEAIDR 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,108,075
Number of extensions: 596113
Number of successful extensions: 1980
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1956
Number of HSP's successfully gapped: 22
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007900
(1060 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003091.2| sorting nexin-2 [Homo sapiens]. 449 e-143
Alignment gi|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens]. 261 8e-70
Alignment gi|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens]. 261 8e-70
Alignment gi|NP_683758.1| sorting nexin-1 isoform b [Homo sapiens]. 217 1e-56
Alignment gi|NP_057060.2| sorting nexin-7 isoform a [Homo sapiens]. 91 2e-18
Alignment gi|NP_001013012.1| sorting nexin-30 [Homo sapiens]. 89 5e-18
Alignment gi|NP_003786.1| sorting nexin-3 isoform a [Homo sapiens]. 72 1e-12
Alignment gi|NP_037478.2| sorting nexin-12 [Homo sapiens]. 67 3e-11
Alignment gi|NP_689413.1| sorting nexin-5 [Homo sapiens]. 65 8e-11
Alignment gi|NP_055241.1| sorting nexin-5 [Homo sapiens]. 65 8e-11
>ref|NP_003091.2| sorting nexin-2 [Homo sapiens].
Length = 519
Score = 449 bits (1154), Expect(2) = e-143
Identities = 241/296 (81%), Positives = 242/296 (81%)
Frame = +1
Query: 49 MAAEREPPPLGDGKPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGTNSNG 228
MAAEREPPPLGDGKPT DI NSNG
Sbjct: 1 MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAE--DISANSNG 58
Query: 229 PKPAEVVLDDDREDLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRIESKSM 408
PKP EVVLDDDREDLFAEATEEVSLDSPEREPIL LIAPRIESKSM
Sbjct: 59 PKPTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSM 118
Query: 409 SAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF 588
SAPVIFDRSREEIEEEANGD+FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF
Sbjct: 119 SAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF 178
Query: 589 SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA 768
SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA
Sbjct: 179 SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAA 238
Query: 769 LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 936
LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK
Sbjct: 239 LERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNK 294
Score = 79.7 bits (195), Expect(2) = e-143
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESDAWFEEKQQQFENLDQQL+KL SVEALVCHRK
Sbjct: 294 KMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRK 335
>ref|NP_001229862.1| sorting nexin-1 isoform d [Homo sapiens].
Length = 557
Score = 261 bits (667), Expect = 8e-70
Identities = 142/275 (51%), Positives = 185/275 (67%), Gaps = 2/275 (0%)
Frame = +1
Query: 220 SNGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRI 393
+NG K + + D+E DLFA+AT E+SLDS + + P
Sbjct: 69 NNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQ---------KKVLAKTLISLPPQ 119
Query: 394 ESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMF 573
E+ + S P + EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL +F
Sbjct: 120 EATNSSKP---QPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLF 176
Query: 574 SKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVE 753
+F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+E
Sbjct: 177 RSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 236
Query: 754 KRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN 933
KRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV+
Sbjct: 237 KRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVS 296
Query: 934 K*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
K + ++ ++ LR HAV++
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 331
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338
>ref|NP_003090.2| sorting nexin-1 isoform a [Homo sapiens].
Length = 522
Score = 261 bits (667), Expect = 8e-70
Identities = 142/275 (51%), Positives = 185/275 (67%), Gaps = 2/275 (0%)
Frame = +1
Query: 220 SNGPKPAEVVLDDDRE--DLFAEATEEVSLDSPEREPILXXXXXXXXXXXXXXXLIAPRI 393
+NG K + + D+E DLFA+AT E+SLDS + + P
Sbjct: 69 NNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQ---------KKVLAKTLISLPPQ 119
Query: 394 ESKSMSAPVIFDRSREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMF 573
E+ + S P + EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+TSL +F
Sbjct: 120 EATNSSKP---QPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLF 176
Query: 574 SKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVE 753
+F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSSS EF+E
Sbjct: 177 RSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLE 236
Query: 754 KRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN 933
KRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NKA DAV+
Sbjct: 237 KRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVS 296
Query: 934 K*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
K + ++ ++ LR HAV++
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 331
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 297 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 338
>ref|NP_683758.1| sorting nexin-1 isoform b [Homo sapiens].
Length = 457
Score = 217 bits (553), Expect = 1e-56
Identities = 109/176 (61%), Positives = 135/176 (76%)
Frame = +1
Query: 511 GDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKS 690
GDGMNAY+AY+VTT+TSL +F +F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS
Sbjct: 91 GDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKS 150
Query: 691 IVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVN 870
++GMTKVKVGKEDSSS EF+EKRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV
Sbjct: 151 LIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVG 210
Query: 871 TQALSGAGILRMVNKAADAVNK*QSR*MNRMHGLKKSSSNLKIWISNLRNFHAVLK 1038
TQ LSGAG+L+M NKA DAV+K + ++ ++ LR HAV++
Sbjct: 211 TQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVE 266
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +3
Query: 933 QMTIQMNESDAWFEEKQQQFENLDQQLKKLSCSVEALVCHRK 1058
+MTI+MNESD WFEEK Q+ E +Q+L+KL VE LV HRK
Sbjct: 232 KMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRK 273
>ref|NP_057060.2| sorting nexin-7 isoform a [Homo sapiens].
Length = 451
Score = 90.9 bits (224), Expect = 2e-18
Identities = 57/163 (34%), Positives = 85/163 (52%)
Frame = +1
Query: 442 EIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 621
+I+ E D+ D+ I V +PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 84 QIKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLW 143
Query: 622 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 801
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 144 LKGKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 195
Query: 802 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAV 930
PTL + D + FL + +++ G G+L + + AV
Sbjct: 196 PTLTFNEDFKIFLTAQAW--ELSSHKKQGPGLLSRMGQTVRAV 236
>ref|NP_001013012.1| sorting nexin-30 [Homo sapiens].
Length = 437
Score = 89.4 bits (220), Expect = 5e-18
Identities = 51/141 (36%), Positives = 80/141 (56%)
Frame = +1
Query: 433 SREEIEEEANGDVFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSD 612
+R +++++ +G+ D+ + V DP+K M Y+ YR+TTK++ F E+SV+RR+ D
Sbjct: 76 NRLQLDDDIDGETRDLFVIVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQD 135
Query: 613 FLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRT 792
F L SKL +++PP PEK +V G D S EFVE RR AL+++L+R
Sbjct: 136 FDWLRSKLEES--QPTHLIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRI 187
Query: 793 VKHPTLLQDPDLRQFLESSEL 855
HP L + FL + +L
Sbjct: 188 TDHPVLSFNEHFNIFLTAKDL 208
>ref|NP_003786.1| sorting nexin-3 isoform a [Homo sapiens].
Length = 162
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/129 (30%), Positives = 68/129 (52%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 85
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
Query: 838 LESSELPRA 864
L+ + ++
Sbjct: 145 LQDEIIDKS 153
>ref|NP_037478.2| sorting nexin-12 [Homo sapiens].
Length = 162
Score = 67.0 bits (162), Expect = 3e-11
Identities = 39/128 (30%), Positives = 64/128 (50%)
Frame = +1
Query: 478 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 657
+EI + +P+ VG G + Y V +T+L +F E V+RR+SDF L ++L
Sbjct: 30 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DS 86
Query: 658 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 837
+VPP P K++ + G E F+E+RR LE+++ + HP + L F
Sbjct: 87 KIVVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMF 145
Query: 838 LESSELPR 861
L+ + R
Sbjct: 146 LQEEAIDR 153
>ref|NP_689413.1| sorting nexin-5 [Homo sapiens].
Length = 404
Score = 65.5 bits (158), Expect = 8e-11
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Frame = +1
Query: 475 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
DI +S+ +KV + V TKT+L F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDY 85
Query: 655 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 777
G I+PPAP K M K+ G+ + EF + ++ ++ E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEV 145
Query: 778 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAV 930
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEV 197
>ref|NP_055241.1| sorting nexin-5 [Homo sapiens].
Length = 404
Score = 65.5 bits (158), Expect = 8e-11
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Frame = +1
Query: 475 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 654
DI +S+ +KV + V TKT+L F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDY 85
Query: 655 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 777
G I+PPAP K M K+ G+ + EF + ++ ++ E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEV 145
Query: 778 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAV 930
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEV 197
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,890,810
Number of extensions: 702615
Number of successful extensions: 2438
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2418
Number of HSP's successfully gapped: 21
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007900
(1060 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118545.1| Sus scrofa unplaced genomic scaffold ChrUScaf943 329 2e-87
>gb|JH118545.1| Sus scrofa unplaced genomic scaffold ChrUScaf943
Length = 101137
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 279 agaggccacagaagaagtttctctagacagtcctgaaagggaacccatactctcctcaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55039 agaggccacagaagaagtttctctagacagtcctgaaagggaacccatactctcctcaga 54980
Query: 339 accttctcctgcagtcacacctgtgacccccaccacactcattgctcccagaattgaatc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54979 accttctcctgcagtcacacctgtgacccccaccacactcattgctcccagaattgaatc 54920
Query: 399 aaagagtatgtctgctcctgtgatctttgatagatctagggaagag 444
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54919 aaagagtatgtctgctcctgtgatctttgatagatctagggaagag 54874
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 554 agacttctctttccatgttcagtaagagtgaattttcagttaaaagaagattcagtgact 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51064 agacttctctttccatgttcagtaagagtgaattttcagttaaaagaagattcagtgact 51005
Query: 614 ttcttggtttgcatagcaagttagcaagcaagtatttacatgttggttatattgtgccac 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51004 ttcttggtttgcatagcaagttagcaagcaagtatttacatgttggttatattgtgccac 50945
Query: 674 cagctccagaaaagagtatagtagg 698
|||||||||||||||||||||||||
Sbjct: 50944 cagctccagaaaagagtatagtagg 50920
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 155 agtccagtccatcatctccagaaccagctgcagctagtcttcttgcagaagatattggta 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59946 agtccagtccatcatctccagaaccagctgcagctagtcttcttgcagaagatattggta 59887
Query: 215 ctaactccaacggcccaaaacctgcagaagttgtgctagatgatgacagagaagatcttt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59886 ctaactccaacggcccaaaacctgcagaagttgtgctagatgatgacagagaagatcttt 59827
Query: 275 ttgcag 280
||||||
Sbjct: 59826 ttgcag 59821
Score = 206 bits (104), Expect = 2e-50
Identities = 114/116 (98%), Gaps = 1/116 (0%)
Strand = Plus / Minus
Query: 851 agctgcctagagcagttaatacacaggctctgagtggagcaggaatattgaggatggtga 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40986 agctgcctagagcagttaatacacaggctctgagtggagcaggaatattgaggatggtga 40927
Query: 911 acaaggctgccgacgctgtcaac-aaatgacaatccagatgaatgaatcggatgca 965
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 40926 acaaggctgccgacgctgtcaacaaaatgacaatcaagatgaatgaatcggatgca 40871
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 65 aacctcctccactgggggacgggaaacccaccgactttgaggagctggaggacggagagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83674 aacctcctccactgggggacgggaaacccaccgactttgaggagctggaggacggagagg 83615
Query: 125 acctgttcaccagcactgtctccactctagag 156
||||||||||||||||||||||||||||||||
Sbjct: 83614 acctgttcaccagcactgtctccactctagag 83583
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 696 aggcatgaccaaggtcaaagtgggtaaagaagattcatcatccacagaatttgtagaaaa 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47226 aggcatgaccaaggtcaaagtgggtaaagaagattcatcatccacagaatttgtagaaaa 47167
Query: 756 acggagagcagctcttgaaag 776
|||||||||||||||||||||
Sbjct: 47166 acggagagcagctcttgaaag 47146
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 775 agatatcttcaaagaacagtaaagcatccaactttactacaggatcctgacttgaggcag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42112 agatatcttcaaagaacagtaaagcatccaactttactacaggatcctgacttgaggcag 42053
Query: 835 ttcttggaaagctcagag 852
||||||||||||||||||
Sbjct: 42052 ttcttggaaagctcagag 42035
Score = 149 bits (75), Expect = 4e-33
Identities = 92/95 (96%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 966 tggtttgaagaaaagcagcagcaatttgaaaatctggatcagcaacttaagaaactttca 1025
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 40616 tggtttgaagaaaagcagcagcaatttgaaaatctggatcagcaacttaggaaac-ttca 40558
Query: 1026 tg-cagtgttgaagccttggtctgtcatagaaaag 1059
|| ||||||||||||||||||||||||||||||||
Sbjct: 40557 tgccagtgttgaagccttggtctgtcatagaaaag 40523
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 443 agattgaagaagaagcaaatggagacgtttttgatatagagattggcgtatcagatccag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53060 agattgaagaagaagcaaatggagacgtttttgatatagagattggcgtatcagatccag 53001
Query: 503 agaaagttggtga 515
|||||||||||||
Sbjct: 53000 agaaagttggtga 52988
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 2 gacaggtccgcgaggtcccgctcgcgcagtagtctgggcgagcgaagatggc 53
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83826 gacaggtccgcgaggtcccgctcgcgcagtagtctgggcgagcgaagatggc 83775
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 511 ggtgatggcatgaatgcttacatggcttacagagtaacaacaaag 555
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52660 ggtgatggcatgaatgcttacatggcttacagagtaacaacaaag 52616
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,380,867
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 11
Length of query: 1060
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1039
Effective length of database: 2,808,413,156
Effective search space: 2917941269084
Effective search space used: 2917941269084
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)