Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007910
(660 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002695852.1| PREDICTED: myosin, heavy chain 4, skeletal m... 286 1e-77
Alignment gi|XP_615306.3| PREDICTED: myosin, heavy chain 4, skeletal musc... 286 1e-77
Alignment gi|NP_776542.1| myosin-1 [Bos taurus]. 284 4e-77
Alignment gi|NP_001159699.1| myosin-2 [Bos taurus]. 281 3e-76
Alignment gi|NP_001193103.1| myosin-8 [Bos taurus]. 271 3e-73
Alignment gi|XP_002695851.1| PREDICTED: myosin, heavy chain 8, skeletal m... 271 3e-73
Alignment gi|NP_777152.1| myosin-7 [Bos taurus]. 259 1e-69
Alignment gi|XP_002690549.1| PREDICTED: myosin, heavy polypeptide 6, card... 255 3e-68
Alignment gi|XP_002700601.1| PREDICTED: myosin, heavy polypeptide 6, card... 255 3e-68
Alignment gi|NP_001095305.1| myosin-3 [Bos taurus]. 247 7e-66
>ref|XP_002695852.1| PREDICTED: myosin, heavy chain 4, skeletal muscle [Bos taurus].
Length = 1938
Score = 286 bits (731), Expect = 1e-77
Identities = 151/168 (89%), Positives = 152/168 (90%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1771 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEVE 1830
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE
Sbjct: 1831 NEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 1890
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNL+KFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1891 QSNVNLAKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1938
Score = 48.1 bits (113), Expect = 6e-06
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLA--LKGGKKQIQKXXXXXXXXXXX 176
+L+ E+D L + K +EQ V+DL+ L++ ++L L+ K++++
Sbjct: 1012 DLQAEEDKVNTLTKSKTKLEQQVEDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMD 1071
Query: 177 XXXXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEA 356
+++ E L+K E + L + E+++ ++LQ + +LQ++++ + + EA
Sbjct: 1072 IENDKQQLDEK---LKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEI-EA 1127
Query: 357 EEQSNVNLSKFRK-LQHELEEAEER------ADIAESQVNKLR 464
E S K R L ELEE ER A A+ ++NK R
Sbjct: 1128 ERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKR 1170
>ref|XP_615306.3| PREDICTED: myosin, heavy chain 4, skeletal muscle [Bos taurus].
Length = 1939
Score = 286 bits (731), Expect = 1e-77
Identities = 151/168 (89%), Positives = 152/168 (90%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEVE 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE
Sbjct: 1832 NEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNL+KFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1892 QSNVNLAKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1939
Score = 49.3 bits (116), Expect = 3e-06
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLA--LKGGKKQIQKXXXXXXXXXXX 176
+L+ E+D L + K +EQ V+DL+ L++ ++L L+ K++++
Sbjct: 1013 DLQAEEDKVNTLTKSKTKLEQQVEDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMD 1072
Query: 177 XXXXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEA 356
+++ E L+K E + L + E+++ ++LQ + +LQ++++ + + EA
Sbjct: 1073 IENDKQQLDEK---LKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEI-EA 1128
Query: 357 EEQSNVNLSKFRK-LQHELEEAEER------ADIAESQVNKLR 464
E S K R L ELEE ER A A+ ++NK R
Sbjct: 1129 ERASRAKAEKLRSDLSRELEEISERLEEAGGATSAQIEMNKKR 1171
>ref|NP_776542.1| myosin-1 [Bos taurus].
Length = 1938
Score = 284 bits (727), Expect = 4e-77
Identities = 148/168 (88%), Positives = 153/168 (91%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1771 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1830
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVEAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1831 SEQKRNVEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1890
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK+ISEE
Sbjct: 1891 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE 1938
>ref|NP_001159699.1| myosin-2 [Bos taurus].
Length = 1940
Score = 281 bits (719), Expect = 3e-76
Identities = 147/168 (87%), Positives = 152/168 (90%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQ+RLDEAEQLALKGGKKQIQK
Sbjct: 1773 ELKKEQDTSAHLERMKKNMEQTVKDLQNRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1832
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVEAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1833 SEQKRNVEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1892
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSN NLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK+ISEE
Sbjct: 1893 QSNTNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE 1940
>ref|NP_001193103.1| myosin-8 [Bos taurus].
Length = 1937
Score = 271 bits (693), Expect = 3e-73
Identities = 140/167 (83%), Positives = 148/167 (88%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1771 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1830
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EA+KGLRKHER+VKELTYQTEEDRKNVLRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1831 SEQKRNAEAIKGLRKHERKVKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEE 1890
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
QSN NL+K RKLQHELEEAEERADIAESQVNKLRVKSRE+HTKV +E
Sbjct: 1891 QSNTNLAKLRKLQHELEEAEERADIAESQVNKLRVKSREIHTKVSAE 1937
Score = 48.9 bits (115), Expect = 4e-06
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLA--LKGGKKQIQKXXXXXXXXXXX 176
+L+ E+D L + K +EQ V DL+ L++ ++L L+ K++++
Sbjct: 1012 DLQAEEDKVNTLNKAKAKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESMVD 1071
Query: 177 XXXXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEA 356
+++ E L+K E + L + E+++ ++LQ + +LQ++++ + + EA
Sbjct: 1072 IENDKQQLDEK---LKKKEFEISNLLSKIEDEQAVEIQLQKKIKELQARIEELEEEI-EA 1127
Query: 357 EEQSNVNLSKFRK-LQHELEEAEER------ADIAESQVNKLR 464
E S K R L ELEE ER A A+ ++NK R
Sbjct: 1128 ERASRAKAEKLRSDLSRELEEISERLEEAGGATSAQIEMNKKR 1170
>ref|XP_002695851.1| PREDICTED: myosin, heavy chain 8, skeletal muscle, perinatal [Bos
taurus].
Length = 1937
Score = 271 bits (693), Expect = 3e-73
Identities = 140/167 (83%), Positives = 148/167 (88%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1771 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1830
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EA+KGLRKHER+VKELTYQTEEDRKNVLRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1831 SEQKRNAEAIKGLRKHERKVKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEE 1890
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
QSN NL+K RKLQHELEEAEERADIAESQVNKLRVKSRE+HTKV +E
Sbjct: 1891 QSNTNLAKLRKLQHELEEAEERADIAESQVNKLRVKSREIHTKVSAE 1937
Score = 48.9 bits (115), Expect = 4e-06
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLA--LKGGKKQIQKXXXXXXXXXXX 176
+L+ E+D L + K +EQ V DL+ L++ ++L L+ K++++
Sbjct: 1012 DLQAEEDKVNTLNKAKAKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESMVD 1071
Query: 177 XXXXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEA 356
+++ E L+K E + L + E+++ ++LQ + +LQ++++ + + EA
Sbjct: 1072 IENDKQQLDEK---LKKKEFEISNLLSKIEDEQAVEIQLQKKIKELQARIEELEEEI-EA 1127
Query: 357 EEQSNVNLSKFRK-LQHELEEAEER------ADIAESQVNKLR 464
E S K R L ELEE ER A A+ ++NK R
Sbjct: 1128 ERASRAKAEKLRSDLSRELEEISERLEEAGGATSAQIEMNKKR 1170
>ref|NP_777152.1| myosin-7 [Bos taurus].
Length = 1935
Score = 259 bits (662), Expect = 1e-69
Identities = 132/168 (78%), Positives = 146/168 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1768 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1827
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1828 AEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 1887
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ TK ++EE
Sbjct: 1888 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGTKGLNEE 1935
>ref|XP_002690549.1| PREDICTED: myosin, heavy polypeptide 6, cardiac muscle, alpha-like
[Bos taurus].
Length = 1927
Score = 255 bits (651), Expect = 3e-68
Identities = 130/163 (79%), Positives = 142/163 (87%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1758 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1817
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVE+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1818 AEQKRNVESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 1877
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK 491
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ K
Sbjct: 1878 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGAK 1920
>ref|XP_002700601.1| PREDICTED: myosin, heavy polypeptide 6, cardiac muscle, alpha-like
[Bos taurus].
Length = 1938
Score = 255 bits (651), Expect = 3e-68
Identities = 130/163 (79%), Positives = 142/163 (87%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1769 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1828
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVE+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1829 AEQKRNVESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 1888
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK 491
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ K
Sbjct: 1889 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGAK 1931
>ref|NP_001095305.1| myosin-3 [Bos taurus].
Length = 1940
Score = 247 bits (630), Expect = 7e-66
Identities = 127/159 (79%), Positives = 139/159 (87%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1769 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLETRIRELESELE 1828
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK+N E+VKGLRK+ERRVKELTYQ+EEDRKNVLRLQDLVDKLQ KVK+YKRQAEEA+E
Sbjct: 1829 GEQKKNTESVKGLRKYERRVKELTYQSEEDRKNVLRLQDLVDKLQMKVKSYKRQAEEADE 1888
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q+N +L+KFRK QHELEEAEERADIAESQVNKLR K+R+
Sbjct: 1889 QANAHLTKFRKAQHELEEAEERADIAESQVNKLRAKTRD 1927
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 16,956,820
Number of extensions: 387204
Number of successful extensions: 2107
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 1994
Number of HSP's successfully gapped: 26
Length of query: 220
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 122
Effective length of database: 14,438,750
Effective search space: 1761527500
Effective search space used: 1761527500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007910
(660 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070262.1| myosin-4 [Canis lupus familiaris]. 283 9e-77
Alignment gi|NP_001070263.1| myosin-2 [Canis lupus familiaris]. 283 1e-76
Alignment gi|NP_001107189.1| myosin-1 [Canis lupus familiaris]. 281 5e-76
Alignment gi|NP_001070703.1| myosin-8 [Canis lupus familiaris]. 276 1e-74
Alignment gi|NP_001107183.1| myosin-7 [Canis lupus familiaris]. 257 6e-69
Alignment gi|XP_850445.1| PREDICTED: similar to myosin, heavy polypeptide... 243 8e-65
Alignment gi|NP_001107184.1| myosin-3 [Canis lupus familiaris]. 233 9e-62
Alignment gi|XP_534397.2| PREDICTED: similar to myosin, heavy polypeptide... 216 2e-56
Alignment gi|XP_848707.1| PREDICTED: similar to myosin, heavy polypeptide... 182 3e-46
Alignment gi|XP_546980.2| PREDICTED: similar to myosin, heavy polypeptide... 176 1e-44
>ref|NP_001070262.1| myosin-4 [Canis lupus familiaris].
Length = 1939
Score = 283 bits (724), Expect = 9e-77
Identities = 148/168 (88%), Positives = 153/168 (91%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEVE 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQ+KVKAYKRQAEEAEE
Sbjct: 1832 NEQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQTKVKAYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNL+KFRK+QHELEEAEERADIAESQVNKLRVKSREVHTKVI+EE
Sbjct: 1892 QSNVNLAKFRKIQHELEEAEERADIAESQVNKLRVKSREVHTKVITEE 1939
>ref|NP_001070263.1| myosin-2 [Canis lupus familiaris].
Length = 1940
Score = 283 bits (723), Expect = 1e-76
Identities = 148/168 (88%), Positives = 151/168 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1773 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1832
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1833 SEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1892
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSN NLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1893 QSNTNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1940
>ref|NP_001107189.1| myosin-1 [Canis lupus familiaris].
Length = 1953
Score = 281 bits (718), Expect = 5e-76
Identities = 147/168 (87%), Positives = 150/168 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1786 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1845
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK N+E VK LRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQ+KVKAYKRQAEEAEE
Sbjct: 1846 SEQKHNIETVKSLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQAKVKAYKRQAEEAEE 1905
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK+ISEE
Sbjct: 1906 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE 1953
>ref|NP_001070703.1| myosin-8 [Canis lupus familiaris].
Length = 1939
Score = 276 bits (706), Expect = 1e-74
Identities = 144/167 (86%), Positives = 149/167 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1773 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVHELEGEVE 1832
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1833 SEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEE 1892
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
QSN NL+KFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK+ +E
Sbjct: 1893 QSNTNLAKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKISAE 1939
>ref|NP_001107183.1| myosin-7 [Canis lupus familiaris].
Length = 1935
Score = 257 bits (657), Expect = 6e-69
Identities = 131/168 (77%), Positives = 145/168 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1768 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1827
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1828 AEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 1887
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ K ++EE
Sbjct: 1888 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGAKGLNEE 1935
>ref|XP_850445.1| PREDICTED: similar to myosin, heavy polypeptide 13, skeletal muscle
[Canis familiaris].
Length = 512
Score = 243 bits (621), Expect = 8e-65
Identities = 126/164 (76%), Positives = 138/164 (84%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 340 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELESELD 399
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKR EA+KG K+ER+VKELTYQ EEDRKN+LRLQDLVDKLQ+KVKAYKRQAEEAEE
Sbjct: 400 AEQKRGAEALKGAHKYERKVKELTYQAEEDRKNILRLQDLVDKLQAKVKAYKRQAEEAEE 459
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKV 494
Q+N +SK R++QHELEEAEERADIAESQVNKLR KSR+V +V
Sbjct: 460 QANTQMSKCRRVQHELEEAEERADIAESQVNKLRAKSRDVGAQV 503
>ref|NP_001107184.1| myosin-3 [Canis lupus familiaris].
Length = 1920
Score = 233 bits (595), Expect = 9e-62
Identities = 124/159 (77%), Positives = 134/159 (84%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1766 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKL------------ 1813
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
+VKGLRK+ERRVKELTYQ+EEDRKNVLRLQDLVDKLQ KVK+YKRQAEEA+E
Sbjct: 1814 -----ETRSVKGLRKYERRVKELTYQSEEDRKNVLRLQDLVDKLQVKVKSYKRQAEEADE 1868
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q+N +L+KFRK QHELEEAEERADIAESQVNKLR K+R+
Sbjct: 1869 QANAHLTKFRKAQHELEEAEERADIAESQVNKLRAKTRD 1907
>ref|XP_534397.2| PREDICTED: similar to myosin, heavy polypeptide 7B, cardiac muscle,
beta [Canis familiaris].
Length = 1924
Score = 216 bits (549), Expect = 2e-56
Identities = 106/159 (66%), Positives = 132/159 (83%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKK +EQTV++LQ RL+EAEQ AL+GGKKQ+QK
Sbjct: 1709 ELKKEQDTSAHLERMKKTLEQTVRELQARLEEAEQAALRGGKKQVQKLEAKVRELEAELD 1768
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK++ EA+KG+RKHERRVKEL YQ EEDRKN+ R+QDLV+KLQSKVK+YKRQ EEAE+
Sbjct: 1769 AEQKKHAEALKGVRKHERRVKELVYQAEEDRKNLARMQDLVEKLQSKVKSYKRQFEEAEQ 1828
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q++ NL+K+RK QHEL++AEERAD+AE+Q NKLR ++R+
Sbjct: 1829 QASTNLAKYRKAQHELDDAEERADMAETQANKLRARTRD 1867
>ref|XP_848707.1| PREDICTED: similar to myosin, heavy polypeptide 7, cardiac muscle,
beta [Canis familiaris].
Length = 2106
Score = 182 bits (461), Expect = 3e-46
Identities = 95/164 (57%), Positives = 121/164 (73%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERM+KNMEQT+KDLQ RLDEAEQ A+ G +KQIQK
Sbjct: 1810 ELKKEQDTSAHLERMRKNMEQTIKDLQKRLDEAEQTAVMGNRKQIQKLESRVRELEGELE 1869
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
+R EA G R+ ER V+EL+ Q EED+ N+ R+Q L+DKLQ +V++YK+Q E AE
Sbjct: 1870 DEARRAAEARSGARRLERCVRELSRQVEEDKTNLSRMQTLMDKLQLQVQSYKQQMEAAEA 1929
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKV 494
Q+N LSK++K QHEL EA+ERA+IAESQVNKL++K++E K+
Sbjct: 1930 QANQYLSKYKKQQHELNEAKERAEIAESQVNKLKIKAKEFRKKL 1973
>ref|XP_546980.2| PREDICTED: similar to myosin, heavy polypeptide 7, cardiac muscle,
beta [Canis familiaris].
Length = 1961
Score = 176 bits (447), Expect = 1e-44
Identities = 91/168 (54%), Positives = 121/168 (72%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
EL++EQD HLE++KKN E T+KDLQ +++EAEQLALKGGK+ I K
Sbjct: 1778 ELRQEQDHCMHLEKIKKNYEITIKDLQAKMEEAEQLALKGGKRTIMKLEARIKELETELD 1837
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK++VE VK LRK+ERR+KEL +QTEED K R+Q+LV+KLQ+K+K YKRQ EEAEE
Sbjct: 1838 GEQKQHVETVKTLRKNERRLKELVFQTEEDHKTNQRMQELVEKLQNKLKVYKRQIEEAEE 1897
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N L+++RK HEL++AEERA +AE+ +NKLR + R + S E
Sbjct: 1898 QANQTLARYRKTVHELDDAEERAGMAETALNKLRTRHRVAGKGITSVE 1945
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 17,573,495
Number of extensions: 370400
Number of successful extensions: 2848
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 2535
Number of HSP's successfully gapped: 51
Length of query: 220
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 121
Effective length of database: 15,574,240
Effective search space: 1884483040
Effective search space used: 1884483040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007910
(660 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116613.1| myosin-4 [Sus scrofa]. 288 1e-78
Alignment gi|NP_001098421.1| myosin-1 [Sus scrofa]. 283 7e-77
Alignment gi|NP_999301.1| myosin-2 [Sus scrofa]. 283 7e-77
Alignment gi|XP_003356754.1| PREDICTED: myosin-7-like [Sus scrofa]. 259 9e-70
Alignment gi|NP_999020.1| myosin-7 [Sus scrofa]. 257 3e-69
Alignment gi|XP_003132042.1| PREDICTED: myosin-3 [Sus scrofa]. 248 3e-66
Alignment gi|XP_003360004.1| PREDICTED: myosin-7B [Sus scrofa]. 215 1e-56
Alignment gi|XP_003132043.2| PREDICTED: LOW QUALITY PROTEIN: myosin-8-lik... 190 7e-49
Alignment gi|XP_003358872.1| PREDICTED: myosin-15, partial [Sus scrofa]. 188 2e-48
Alignment gi|XP_003124367.2| PREDICTED: myosin-7B-like [Sus scrofa]. 166 1e-41
>ref|NP_001116613.1| myosin-4 [Sus scrofa].
Length = 1937
Score = 288 bits (738), Expect = 1e-78
Identities = 153/168 (91%), Positives = 153/168 (91%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1770 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEVE 1829
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE
Sbjct: 1830 NEQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 1889
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1890 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1937
>ref|NP_001098421.1| myosin-1 [Sus scrofa].
Length = 1939
Score = 283 bits (723), Expect = 7e-77
Identities = 147/168 (87%), Positives = 152/168 (90%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVE VKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1832 SEQKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK+ISEE
Sbjct: 1892 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE 1939
Score = 47.4 bits (111), Expect = 7e-06
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLA--LKGGKKQIQKXXXXXXXXXXX 176
+L+ E+D L + K +EQ V DL+ L++ ++L L+ K++++
Sbjct: 1013 DLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMD 1072
Query: 177 XXXXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEA 356
+++ E L+K E + L + E+++ ++LQ + +LQ++++ + + EA
Sbjct: 1073 IENDKQQLDEK---LKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEI-EA 1128
Query: 357 EEQSNVNLSKFRK-LQHELEEAEER------ADIAESQVNKLR 464
E S K R L ELEE ER A A+ ++NK R
Sbjct: 1129 ERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKR 1171
>ref|NP_999301.1| myosin-2 [Sus scrofa].
Length = 1939
Score = 283 bits (723), Expect = 7e-77
Identities = 148/168 (88%), Positives = 151/168 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1832 SEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSN NLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1892 QSNTNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1939
Score = 48.5 bits (114), Expect = 3e-06
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
+L+ E+D L + K +EQ V DL+ L++ ++L + + + +K
Sbjct: 1013 DLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAK-RKLEGDLKLAQESIM 1071
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
+ + + L+K E + L + E+++ ++LQ + +LQ++++ + + EAE
Sbjct: 1072 DIENEKQQLDEKLKKKEFEISNLQSKIEDEQALAIQLQKKIKELQARIEELEEEI-EAER 1130
Query: 363 QSNVNLSKFRK-LQHELEEAEER------ADIAESQVNKLR 464
S K R L ELEE ER A A+ ++NK R
Sbjct: 1131 ASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKR 1171
>ref|XP_003356754.1| PREDICTED: myosin-7-like [Sus scrofa].
Length = 973
Score = 259 bits (662), Expect = 9e-70
Identities = 132/168 (78%), Positives = 146/168 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 806 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 865
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 866 AEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 925
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ TK ++EE
Sbjct: 926 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGTKGLNEE 973
>ref|NP_999020.1| myosin-7 [Sus scrofa].
Length = 1935
Score = 257 bits (657), Expect = 3e-69
Identities = 131/168 (77%), Positives = 145/168 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1768 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1827
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAY RQAEEAEE
Sbjct: 1828 AEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYNRQAEEAEE 1887
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ TK ++EE
Sbjct: 1888 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGTKGLNEE 1935
>ref|XP_003132042.1| PREDICTED: myosin-3 [Sus scrofa].
Length = 1940
Score = 248 bits (632), Expect = 3e-66
Identities = 127/159 (79%), Positives = 140/159 (88%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1769 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARIRELEFELE 1828
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK+N E+VKGLRK+ERRVKELTYQ+EEDRKNVLRLQDLVDKLQ+KVK+YKRQAEEA+E
Sbjct: 1829 GEQKKNTESVKGLRKYERRVKELTYQSEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEADE 1888
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q+N +L+KFRK QHELEEAEERADIAESQVNKLR K+R+
Sbjct: 1889 QANAHLTKFRKAQHELEEAEERADIAESQVNKLRAKTRD 1927
>ref|XP_003360004.1| PREDICTED: myosin-7B [Sus scrofa].
Length = 1931
Score = 215 bits (548), Expect = 1e-56
Identities = 106/159 (66%), Positives = 131/159 (82%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTS HLERMKK +EQTV++LQ RL+EAEQ AL+GGKKQ+QK
Sbjct: 1765 ELKKEQDTSTHLERMKKTLEQTVRELQARLEEAEQAALRGGKKQVQKLEAKVRELEAELD 1824
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK++ EA+KG+RKHERRVKEL YQ EEDRKN+ R+QDLVDKLQSKVK+YKRQ EEAE+
Sbjct: 1825 AEQKKHAEALKGVRKHERRVKELMYQAEEDRKNLARMQDLVDKLQSKVKSYKRQFEEAEQ 1884
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q++ NL+K+RK QHEL++AEERAD+AE+Q NKLR ++R+
Sbjct: 1885 QASTNLAKYRKAQHELDDAEERADMAETQANKLRARTRD 1923
>ref|XP_003132043.2| PREDICTED: LOW QUALITY PROTEIN: myosin-8-like [Sus scrofa].
Length = 1943
Score = 190 bits (482), Expect = 7e-49
Identities = 98/118 (83%), Positives = 102/118 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1815 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1874
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEA 356
QKRN EAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEA
Sbjct: 1875 SEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEA 1932
Score = 105 bits (262), Expect = 2e-23
Identities = 52/63 (82%), Positives = 57/63 (90%)
Frame = +3
Query: 189 QKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEEQS 368
QKRNVE VKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEE +
Sbjct: 713 QKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEERYKVL 772
Query: 369 NVN 377
N +
Sbjct: 773 NAS 775
>ref|XP_003358872.1| PREDICTED: myosin-15, partial [Sus scrofa].
Length = 1637
Score = 188 bits (477), Expect = 2e-48
Identities = 97/167 (58%), Positives = 125/167 (74%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLE+M+KNMEQT+KDLQ RLD+AEQ AL G +KQIQK
Sbjct: 1471 ELKKEQDTSAHLEKMRKNMEQTIKDLQERLDDAEQTALMGTRKQIQKLESRVHELEGELE 1530
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
+RN EA +G R+ ER +KELTYQ EED+K++ R+Q L+D LQ K ++YK+Q E AE
Sbjct: 1531 SEVRRNAEAQRGARRLERCIKELTYQAEEDKKSMGRMQTLMDNLQLKAQSYKQQIEAAEA 1590
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
++N LSK++KLQHEL EA+ERA+IAESQV+KL++K++E KV E
Sbjct: 1591 EANQYLSKYKKLQHELNEAKERAEIAESQVHKLKIKAKEFGRKVREE 1637
>ref|XP_003124367.2| PREDICTED: myosin-7B-like [Sus scrofa].
Length = 525
Score = 166 bits (420), Expect = 1e-41
Identities = 88/168 (52%), Positives = 118/168 (70%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
EL +EQD HLE++K N E T+KDLQ +++EA QLALKGGK+ I K
Sbjct: 244 ELSREQDHCMHLEKIK-NYEVTIKDLQAKVEEAAQLALKGGKRTIMKLEARIKELETELD 302
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK++VE VK LRK+ERR+KEL +Q EED K R+Q+LV+KLQ+K+K YKRQ EEAEE
Sbjct: 303 GEQKQHVETVKTLRKNERRLKELAFQMEEDHKTNQRMQELVEKLQNKLKVYKRQIEEAEE 362
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N L+++RK+ HEL++AEERA +AE+ +NKLR + R + S E
Sbjct: 363 QANQTLARYRKMVHELDDAEERAGMAETALNKLRTRHRVAGKGITSVE 410
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 11,167,778
Number of extensions: 292441
Number of successful extensions: 1323
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 1255
Number of HSP's successfully gapped: 21
Length of query: 220
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,978,717
Effective search space: 1122339625
Effective search space used: 1122339625
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007910
(660 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034985.2| myosin-4 [Mus musculus]. 285 2e-77
Alignment gi|NP_109604.1| myosin-1 [Mus musculus]. 285 3e-77
Alignment gi|NP_001034634.2| myosin heavy chain IIa [Mus musculus]. 277 4e-75
Alignment gi|NP_796343.2| myosin-8 [Mus musculus]. 276 1e-74
Alignment gi|NP_542766.1| myosin-7 [Mus musculus]. 257 5e-69
Alignment gi|NP_001157643.1| myosin-6 [Mus musculus]. 253 7e-68
Alignment gi|NP_034986.1| myosin-6 [Mus musculus]. 253 7e-68
Alignment gi|NP_001093105.1| myosin-3 [Mus musculus]. 248 4e-66
Alignment gi|NP_001074719.1| myosin-13 [Mus musculus]. 240 6e-64
Alignment gi|NP_001078847.1| myosin-7B [Mus musculus]. 220 6e-58
>ref|NP_034985.2| myosin-4 [Mus musculus].
Length = 1939
Score = 285 bits (729), Expect = 2e-77
Identities = 149/168 (88%), Positives = 153/168 (91%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELENEVE 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN+EAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQ+KVKAYKRQAEEAEE
Sbjct: 1832 NEQKRNIEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQTKVKAYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNL+KFRK+QHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1892 QSNVNLAKFRKIQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1939
>ref|NP_109604.1| myosin-1 [Mus musculus].
Length = 1942
Score = 285 bits (728), Expect = 3e-77
Identities = 148/168 (88%), Positives = 153/168 (91%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1775 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1834
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVEA+KGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE
Sbjct: 1835 NEQKRNVEAIKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 1894
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNL+KFRK+QHELEEAEERADIAESQVNKLRVKSREVHTK+ISEE
Sbjct: 1895 QSNVNLAKFRKIQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE 1942
>ref|NP_001034634.2| myosin heavy chain IIa [Mus musculus].
Length = 1942
Score = 277 bits (709), Expect = 4e-75
Identities = 145/168 (86%), Positives = 150/168 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQ RLDEAEQLALKGGKKQIQK
Sbjct: 1775 ELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1834
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1835 SEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1894
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSN NLSKFRK+QHELEEAEERADIAESQVNKLRVKSREVHTK+ISEE
Sbjct: 1895 QSNTNLSKFRKIQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE 1942
>ref|NP_796343.2| myosin-8 [Mus musculus].
Length = 1937
Score = 276 bits (706), Expect = 1e-74
Identities = 144/167 (86%), Positives = 149/167 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1771 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1830
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1831 NEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEE 1890
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
QSN NL+KFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK+ +E
Sbjct: 1891 QSNANLAKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKISAE 1937
Score = 47.4 bits (111), Expect = 9e-06
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLA--LKGGKKQIQKXXXXXXXXXXX 176
+L+ E+D L + K +EQ V DL+ L++ ++L L+ K++++
Sbjct: 1012 DLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMD 1071
Query: 177 XXXXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEA 356
+++ E L+K E + L + E+++ ++LQ + +LQ++++ + + EA
Sbjct: 1072 IENDKQQLDEK---LKKKEFEISNLISKIEDEQAVEIQLQKKIKELQARIEELEEEI-EA 1127
Query: 357 EEQSNVNLSKFRK-LQHELEEAEER------ADIAESQVNKLR 464
E S K R L ELEE ER A A+ ++NK R
Sbjct: 1128 ERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQVEMNKKR 1170
>ref|NP_542766.1| myosin-7 [Mus musculus].
Length = 1935
Score = 257 bits (657), Expect = 5e-69
Identities = 131/168 (77%), Positives = 145/168 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1768 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1827
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1828 AEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 1887
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ K ++EE
Sbjct: 1888 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGAKGLNEE 1935
>ref|NP_001157643.1| myosin-6 [Mus musculus].
Length = 1938
Score = 253 bits (647), Expect = 7e-68
Identities = 128/168 (76%), Positives = 144/168 (85%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1770 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1829
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEED+KN++RLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1830 AEQKRNAESVKGMRKSERRIKELTYQTEEDKKNLMRLQDLVDKLQLKVKAYKRQAEEAEE 1889
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ K + +E
Sbjct: 1890 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGAKKMHDE 1937
>ref|NP_034986.1| myosin-6 [Mus musculus].
Length = 1938
Score = 253 bits (647), Expect = 7e-68
Identities = 128/168 (76%), Positives = 144/168 (85%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1770 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1829
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEED+KN++RLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1830 AEQKRNAESVKGMRKSERRIKELTYQTEEDKKNLMRLQDLVDKLQLKVKAYKRQAEEAEE 1889
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ K + +E
Sbjct: 1890 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGAKKMHDE 1937
>ref|NP_001093105.1| myosin-3 [Mus musculus].
Length = 1940
Score = 248 bits (632), Expect = 4e-66
Identities = 128/159 (80%), Positives = 139/159 (87%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1769 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLETRIRELEFELE 1828
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKGLRK+ERRVKELTYQ+EEDRKNVLRLQDLVDKLQ KVK+YKRQAEEA+E
Sbjct: 1829 GEQKRNTESVKGLRKYERRVKELTYQSEEDRKNVLRLQDLVDKLQVKVKSYKRQAEEADE 1888
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q+N +L+KFRK QHELEEAEERADIAESQVNKLR K+R+
Sbjct: 1889 QANAHLTKFRKAQHELEEAEERADIAESQVNKLRAKTRD 1927
>ref|NP_001074719.1| myosin-13 [Mus musculus].
Length = 1938
Score = 240 bits (613), Expect = 6e-64
Identities = 124/167 (74%), Positives = 139/167 (83%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELESELD 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKR EA+KG K+ER+VKE+TYQ EEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1832 AEQKRGAEALKGAHKYERKVKEMTYQAEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
Q+N LS+ R++QHELEEAEERADIAESQVNKLR KSR+V + + E
Sbjct: 1892 QANTQLSRCRRVQHELEEAEERADIAESQVNKLRAKSRDVGGQKMEE 1938
>ref|NP_001078847.1| myosin-7B [Mus musculus].
Length = 1941
Score = 220 bits (561), Expect = 6e-58
Identities = 109/159 (68%), Positives = 133/159 (83%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKK +EQTV++LQ RL+EAEQ AL+GGKKQ+QK
Sbjct: 1775 ELKKEQDTSAHLERMKKTLEQTVRELQARLEEAEQAALRGGKKQVQKLEAKVRELEAELD 1834
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK++ EA+KG+RKHERRVKEL YQTEEDRKN+ R+QDLVDKLQSKVK+YKRQ EEAE+
Sbjct: 1835 AEQKKHAEALKGVRKHERRVKELVYQTEEDRKNLARMQDLVDKLQSKVKSYKRQFEEAEQ 1894
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q++ NL+K+RK QHEL++AEERAD+AE+Q NKLR +SR+
Sbjct: 1895 QASTNLAKYRKAQHELDDAEERADMAETQANKLRARSRD 1933
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 14,689,668
Number of extensions: 307693
Number of successful extensions: 1904
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 1780
Number of HSP's successfully gapped: 19
Length of query: 220
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 123
Effective length of database: 12,704,067
Effective search space: 1562600241
Effective search space used: 1562600241
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007910
(660 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005954.3| myosin-1 [Homo sapiens]. 281 4e-76
Alignment gi|NP_060003.2| myosin-4 [Homo sapiens]. 278 3e-75
Alignment gi|NP_001093582.1| myosin-2 [Homo sapiens]. 277 5e-75
Alignment gi|NP_060004.3| myosin-2 [Homo sapiens]. 277 5e-75
Alignment gi|NP_002463.2| myosin-8 [Homo sapiens]. 276 1e-74
Alignment gi|NP_000248.2| myosin-7 [Homo sapiens]. 259 1e-69
Alignment gi|NP_002462.2| myosin-6 [Homo sapiens]. 252 2e-67
Alignment gi|NP_002461.2| myosin-3 [Homo sapiens]. 246 1e-65
Alignment gi|NP_003793.2| myosin-13 [Homo sapiens]. 237 6e-63
Alignment gi|NP_065935.2| myosin-7B [Homo sapiens]. 219 2e-57
>ref|NP_005954.3| myosin-1 [Homo sapiens].
Length = 1939
Score = 281 bits (719), Expect = 4e-76
Identities = 145/168 (86%), Positives = 153/168 (91%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRNVEAVKGLRKHER+VKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1832 SEQKRNVEAVKGLRKHERKVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNLSKFR++QHELEEAEERADIAESQVNKLRVKSREVHTK+ISEE
Sbjct: 1892 QSNVNLSKFRRIQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE 1939
>ref|NP_060003.2| myosin-4 [Homo sapiens].
Length = 1939
Score = 278 bits (711), Expect = 3e-75
Identities = 147/168 (87%), Positives = 151/168 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQ RLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELESEVE 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK NVEAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVKAYKRQAEEAEE
Sbjct: 1832 SEQKHNVEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQTKVKAYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSNVNL+KFRKLQHELEEA+ERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1892 QSNVNLAKFRKLQHELEEAKERADIAESQVNKLRVKSREVHTKVISEE 1939
>ref|NP_001093582.1| myosin-2 [Homo sapiens].
Length = 1941
Score = 277 bits (709), Expect = 5e-75
Identities = 146/168 (86%), Positives = 150/168 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQ RLDEAEQLALKGGKKQIQK
Sbjct: 1774 ELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1833
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1834 SEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1893
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSN NL+KFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1894 QSNTNLAKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1941
>ref|NP_060004.3| myosin-2 [Homo sapiens].
Length = 1941
Score = 277 bits (709), Expect = 5e-75
Identities = 146/168 (86%), Positives = 150/168 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQTVKDLQ RLDEAEQLALKGGKKQIQK
Sbjct: 1774 ELKKEQDTSAHLERMKKNMEQTVKDLQLRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1833
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1834 SEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1893
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
QSN NL+KFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE
Sbjct: 1894 QSNTNLAKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 1941
>ref|NP_002463.2| myosin-8 [Homo sapiens].
Length = 1937
Score = 276 bits (706), Expect = 1e-74
Identities = 144/167 (86%), Positives = 149/167 (89%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1771 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVE 1830
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN EAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1831 NEQKRNAEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQAKVKSYKRQAEEAEE 1890
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
QSN NLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK+ +E
Sbjct: 1891 QSNANLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKISAE 1937
>ref|NP_000248.2| myosin-7 [Homo sapiens].
Length = 1935
Score = 259 bits (662), Expect = 1e-69
Identities = 132/168 (78%), Positives = 146/168 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1768 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELE 1827
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEEDRKN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1828 AEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 1887
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISEE 506
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ TK ++EE
Sbjct: 1888 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGTKGLNEE 1935
>ref|NP_002462.2| myosin-6 [Homo sapiens].
Length = 1939
Score = 252 bits (644), Expect = 2e-67
Identities = 128/163 (78%), Positives = 141/163 (86%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKNMEQT+KDLQHRLDEAEQ+ALKGGKKQ+QK
Sbjct: 1770 ELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELEGELE 1829
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKRN E+VKG+RK ERR+KELTYQTEED+KN+LRLQDLVDKLQ KVKAYKRQAEEAEE
Sbjct: 1830 AEQKRNAESVKGMRKSERRIKELTYQTEEDKKNLLRLQDLVDKLQLKVKAYKRQAEEAEE 1889
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTK 491
Q+N NLSKFRK+QHEL+EAEERADIAESQVNKLR KSR++ K
Sbjct: 1890 QANTNLSKFRKVQHELDEAEERADIAESQVNKLRAKSRDIGAK 1932
>ref|NP_002461.2| myosin-3 [Homo sapiens].
Length = 1940
Score = 246 bits (629), Expect = 1e-65
Identities = 127/159 (79%), Positives = 139/159 (87%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1769 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLETRIRELEFELE 1828
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK+N E+VKGLRK+ERRVKELTYQ+EEDRKNVLRLQDLVDKLQ KVK+YKRQAEEA+E
Sbjct: 1829 GEQKKNTESVKGLRKYERRVKELTYQSEEDRKNVLRLQDLVDKLQVKVKSYKRQAEEADE 1888
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q+N +L+KFRK QHELEEAEERADIAESQVNKLR K+R+
Sbjct: 1889 QANAHLTKFRKAQHELEEAEERADIAESQVNKLRAKTRD 1927
>ref|NP_003793.2| myosin-13 [Homo sapiens].
Length = 1938
Score = 237 bits (605), Expect = 6e-63
Identities = 122/167 (73%), Positives = 138/167 (82%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKKN+EQTVKDLQHRLDEAEQLALKGGKKQIQK
Sbjct: 1772 ELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLENRVRELENELD 1831
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QKR EA+KG K+ER+VKE+TYQ EED KN+LRLQDLVDKLQ+KVK+YKRQAEEAEE
Sbjct: 1832 VEQKRGAEALKGAHKYERKVKEMTYQAEEDHKNILRLQDLVDKLQAKVKSYKRQAEEAEE 1891
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKVISE 503
Q+N LS+ R++QHELEEA ERADIAESQVNKLR KSR+V ++ + E
Sbjct: 1892 QANTQLSRCRRVQHELEEAAERADIAESQVNKLRAKSRDVGSQKMEE 1938
>ref|NP_065935.2| myosin-7B [Homo sapiens].
Length = 1983
Score = 219 bits (558), Expect = 2e-57
Identities = 108/159 (67%), Positives = 132/159 (83%)
Frame = +3
Query: 3 ELKKEQDTSAHLERMKKNMEQTVKDLQHRLDEAEQLALKGGKKQIQKXXXXXXXXXXXXX 182
ELKKEQDTSAHLERMKK +EQTV++LQ RL+EAEQ AL+GGKKQ+QK
Sbjct: 1817 ELKKEQDTSAHLERMKKTLEQTVRELQARLEEAEQAALRGGKKQVQKLEAKVRELEAELD 1876
Query: 183 XXQKRNVEAVKGLRKHERRVKELTYQTEEDRKNVLRLQDLVDKLQSKVKAYKRQAEEAEE 362
QK++ EA+KG+RKHERRVKEL YQ EEDRKN+ R+QDLVDKLQSKVK+YKRQ EEAE+
Sbjct: 1877 AEQKKHAEALKGVRKHERRVKELAYQAEEDRKNLARMQDLVDKLQSKVKSYKRQFEEAEQ 1936
Query: 363 QSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSRE 479
Q+N NL+K+RK QHEL++AEERAD+AE+Q NKLR ++R+
Sbjct: 1937 QANTNLAKYRKAQHELDDAEERADMAETQANKLRARTRD 1975
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 17,243,437
Number of extensions: 359541
Number of successful extensions: 2474
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 2293
Number of HSP's successfully gapped: 23
Length of query: 220
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 122
Effective length of database: 15,066,692
Effective search space: 1838136424
Effective search space used: 1838136424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007910
(660 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 377 e-102
Sscrofa_Chr07 190 7e-46
Sscrofa_Chr17 66 3e-08
Sscrofa_Chr10 62 4e-07
>Sscrofa_Chr12
|| Length = 63588571
Score = 377 bits (190), Expect = e-102
Identities = 208/214 (97%)
Strand = Plus / Plus
Query: 356 ggaggaacaatccaacgtcaacctctccaagttccgcaagctccagcacgagctggagga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57984601 ggaggaacaatccaacgtcaacctctccaagttccgcaagctccagcacgagctggagga 57984660
Query: 416 ggccgaggaacgggctgacattgccgagtcccaggtcaacaagctgcgggtcaagagtcg 475
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 57984661 ggccgaggaacgggctgacattgctgagtcccaggtcaacaagttgcgggtcaagagtcg 57984720
Query: 476 ggaggttcacacaaaagtcataagtgaagagtaattcatctaaatgcacaaaagtgacca 535
|||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 57984721 ggaggttcacacaaaaatcataagtgaagagtaattcatccaaatgctcaaaagtgacca 57984780
Query: 536 aagaaatgcacaaaatgtgaaaatctttgtcact 569
|||||||||||| |||||||||||||||||||||
Sbjct: 57984781 aagaaatgcacacaatgtgaaaatctttgtcact 57984814
Score = 258 bits (130), Expect = 3e-66
Identities = 151/158 (95%)
Strand = Plus / Plus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 58003018 aggagctgaagaaggagcaggacaccagtgcccacctggagcggatgaagaagaatatgg 58003077
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
||||||||||||||||||| |||||||| ||||| ||||| || ||| ||||||||||||
Sbjct: 58003078 aacagacggtaaaggacctacagcaccgtctggatgaggctgagcagctggccctgaagg 58003137
Query: 121 gcgggaagaagcagatccagaagctggaggccagggtg 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 58003138 gcgggaagaagcagatccagaagctggaggccagggtg 58003175
Score = 258 bits (130), Expect = 3e-66
Identities = 148/154 (96%)
Strand = Plus / Plus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 58131499 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaacctgg 58131558
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
| |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 58131559 agcagacggtgaaggacctgcagcaccgcctggacgaggcggaacagctggccctgaagg 58131618
Query: 121 gcgggaagaagcagatccagaagctggaggccag 154
||||||||||||||||||||||||||||||||||
Sbjct: 58131619 gcgggaagaagcagatccagaagctggaggccag 58131652
Score = 258 bits (130), Expect = 3e-66
Identities = 151/158 (95%)
Strand = Plus / Plus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 58227590 aggagctgaagaaggagcaggacaccagtgcccacctggagcggatgaagaagaatatgg 58227649
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
||||||||||||||||||| |||||||| ||||| ||||| || ||| ||||||||||||
Sbjct: 58227650 aacagacggtaaaggacctacagcaccgtctggatgaggctgagcagctggccctgaagg 58227709
Query: 121 gcgggaagaagcagatccagaagctggaggccagggtg 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 58227710 gcgggaagaagcagatccagaagctggaggccagggtg 58227747
Score = 250 bits (126), Expect = 8e-64
Identities = 150/158 (94%)
Strand = Plus / Plus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 57981762 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaacctgg 57981821
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
| |||||||| ||||||||||||||||| ||||||||||| || ||| ||||||||||||
Sbjct: 57981822 agcagacggtgaaggacctgcagcaccgtctggacgaggctgagcagctggccctgaagg 57981881
Query: 121 gcgggaagaagcagatccagaagctggaggccagggtg 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 57981882 gcgggaagaagcagatccagaagctggaggccagggtg 57981919
Score = 232 bits (117), Expect = 2e-58
Identities = 141/149 (94%)
Strand = Plus / Minus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 57882566 aggagctgaagaaggagcaggacacctgcgcccacctggagcggatgaagaagaacctgg 57882507
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
| |||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct: 57882506 agcagacggtgaaggacctgcagcaccgcctggacgaggcggagcagctggccctgaagg 57882447
Query: 121 gcgggaagaagcagatccagaagctggag 149
|||||||||||||||||||||||||||||
Sbjct: 57882446 gcgggaagaagcagatccagaagctggag 57882418
Score = 220 bits (111), Expect = 7e-55
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 387 ttccgcaagctccagcacgagctggaggaggccgaggaacgggctgacattgccgagtcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58005538 ttccgcaagctccagcacgagctggaggaggccgaggaacgggctgacattgccgagtcc 58005597
Query: 447 caggtcaacaagctgcgggtcaagagtcgggaggttcacacaaaagtcataagtgaaga 505
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 58005598 caggtcaacaagctgcgggtgaagagccgggaggttcacacaaaagtcataagtgaaga 58005656
Score = 220 bits (111), Expect = 7e-55
Identities = 117/119 (98%)
Strand = Plus / Plus
Query: 387 ttccgcaagctccagcacgagctggaggaggccgaggaacgggctgacattgccgagtcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58230110 ttccgcaagctccagcacgagctggaggaggccgaggaacgggctgacattgccgagtcc 58230169
Query: 447 caggtcaacaagctgcgggtcaagagtcgggaggttcacacaaaagtcataagtgaaga 505
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 58230170 caggtcaacaagctgcgggtgaagagccgggaggttcacacaaaagtcataagtgaaga 58230228
Score = 101 bits (51), Expect = 5e-19
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 177 gttgaaaatgaacagaagcgcaatgttgaggctgtcaagggtcttcggaaacatgagaga 236
||||||| ||||||||||||||||||||| | ||||||||||| || ||||| ||||||
Sbjct: 57982364 gttgaaagtgaacagaagcgcaatgttgaaaccgtcaagggtctacgcaaacacgagaga 57982423
Query: 237 agagtgaaggaactcacttacca 259
||||| |||||||||||||||||
Sbjct: 57982424 agagtaaaggaactcacttacca 57982446
Score = 95.6 bits (48), Expect = 3e-17
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 397 tccagcacgagctggaggaggccgaggaacgggctgacattgccgagtcccaggtcaaca 456
||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 57877799 tccagcatgagctggaggaggccgaggaacgggcggacatcgccgagtcccaagtcaaca 57877740
Query: 457 agctgcgggtcaagag 472
| || |||| ||||||
Sbjct: 57877739 atcttcgggccaagag 57877724
Score = 77.8 bits (39), Expect = 7e-12
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 174 gaggttgaaaatgaacagaagcgcaatgttgaggctgtcaagggtcttcggaaacatgag 233
|||||||| | ||| || ||||| |||| ||| ||||||||||| || || |||||||||
Sbjct: 58003274 gaggttgagagtgagcaaaagcgtaatgctgaagctgtcaagggcctgcgcaaacatgag 58003333
Query: 234 agaagagtgaaggaactcacttaccag 260
|| ||||||||||||||||| ||||||
Sbjct: 58003334 aggagagtgaaggaactcacctaccag 58003360
Score = 77.8 bits (39), Expect = 7e-12
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 174 gaggttgaaaatgaacagaagcgcaatgttgaggctgtcaagggtcttcggaaacatgag 233
|||||||| | ||| || ||||| |||| ||| ||||||||||| || || |||||||||
Sbjct: 58227846 gaggttgagagtgagcaaaagcgtaatgctgaagctgtcaagggcctgcgcaaacatgag 58227905
Query: 234 agaagagtgaaggaactcacttaccag 260
|| ||||||||||||||||| ||||||
Sbjct: 58227906 aggagagtgaaggaactcacctaccag 58227932
Score = 65.9 bits (33), Expect = 3e-08
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 258 cagactgaggaggaccgaaagaatgttctcaggctgcaggacttggtggacaaactacaa 317
||||||||||| ||||| ||||| |||||||||| ||||| ||||||| ||||| |||
Sbjct: 57982564 cagactgaggaagaccgcaagaacattctcaggctccaggatctggtggataaactgcaa 57982623
Query: 318 tccaaagttaaagcttacaagagacaagc 346
| || || ||| ||||||||||||||||
Sbjct: 57982624 gcaaaggtgaaatcttacaagagacaagc 57982652
>Sscrofa_Chr07
|| Length = 134764511
Score = 190 bits (96), Expect = 7e-46
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 81038833 aggagctgaagaaggagcaggacaccagcgcgcacctggagcgcatgaagaagaacatgg 81038774
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
| ||||| | ||||||||||||||||| ||||||||||| || ||| | ||||| ||||
Sbjct: 81038773 agcagaccatcaaggacctgcagcaccggctggacgaggccgagcagatcgccctcaagg 81038714
Query: 121 gcgggaagaagcagatccagaagctggaggccagggtgagggagcttgaaaatgag 176
|||| ||||||||| | ||||||||||||||| ||||| ||||||| || ||||||
Sbjct: 81038713 gcggcaagaagcagctgcagaagctggaggcccgggtgcgggagctggagaatgag 81038658
Score = 190 bits (96), Expect = 7e-46
Identities = 156/176 (88%)
Strand = Plus / Minus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 81068584 aggagctgaagaaggagcaggacaccagcgcgcacctggagcgcatgaagaagaacatgg 81068525
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
| ||||| | ||||||||||||||||| ||||||||||| || ||| | ||||| ||||
Sbjct: 81068524 agcagaccatcaaggacctgcagcaccggctggacgaggccgagcagatcgccctcaagg 81068465
Query: 121 gcgggaagaagcagatccagaagctggaggccagggtgagggagcttgaaaatgag 176
|||| ||||||||| | ||||||||||||||| ||||| ||||||| || ||||||
Sbjct: 81068464 gcggcaagaagcagctgcagaagctggaggcccgggtgcgggagctggagaatgag 81068409
Score = 113 bits (57), Expect = 1e-22
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 356 ggaggaacaatccaacgtcaacctctccaagttccgcaagctccagcacgagctggagga 415
||||||||| ||||| |||||| ||||||||||||||| | |||||||||||||| ||
Sbjct: 81036967 ggaggaacaggccaacaccaacctgtccaagttccgcaaggtgcagcacgagctggatga 81036908
Query: 416 ggccgaggaacgggctgacattgccgagtcccaggtcaacaagctgcgggtcaagag 472
||| ||||| ||||| ||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 81036907 ggcggaggagcgggcggacatcgctgagtcccaggtcaacaagcttcgggccaagag 81036851
Score = 113 bits (57), Expect = 1e-22
Identities = 102/117 (87%)
Strand = Plus / Minus
Query: 356 ggaggaacaatccaacgtcaacctctccaagttccgcaagctccagcacgagctggagga 415
||||||||| ||||| |||||| ||||||||||||||| | |||||||||||||| ||
Sbjct: 81067088 ggaggaacaggccaacaccaacctgtccaagttccgcaaggtgcagcacgagctggatga 81067029
Query: 416 ggccgaggaacgggctgacattgccgagtcccaggtcaacaagctgcgggtcaagag 472
||| ||||| ||||| ||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 81067028 ggcggaggagcgggcggacatcgctgagtcccaggtcaacaagcttcgggccaagag 81066972
>Sscrofa_Chr17
|| Length = 69701581
Score = 65.9 bits (33), Expect = 3e-08
Identities = 123/153 (80%)
Strand = Plus / Plus
Query: 1 aggagctgaagaaggagcaggacaccagcgcccacctggagcggatgaagaagaatatgg 60
|||||||||| |||||||| |||||||| | |||||||| ||||||||||||| | |
Sbjct: 43581366 aggagctgaaaaaggagcaagacaccagtacacacctggaacggatgaagaagacactag 43581425
Query: 61 aacagacggtaaaggacctgcagcaccgcctggacgaggcagaacagttggccctgaagg 120
|||||||||| ||| || ||| ||| || || ||||||||||| ||||| |
Sbjct: 43581426 aacagacggtgcgggagctacaggcccggcttgaggaggcagaacaagctgccctccgtg 43581485
Query: 121 gcgggaagaagcagatccagaagctggaggcca 153
|||||||||||||| | ||||||||||||||||
Sbjct: 43581486 gcgggaagaagcaggtgcagaagctggaggcca 43581518
Score = 63.9 bits (32), Expect = 1e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 382 ccaagttccgcaagctccagcacgagctggaggaggccgaggaacgggctgacattgccg 441
|||||| ||||||| ||||||||||||||| || || ||||| ||||| ||||| || |
Sbjct: 43582297 ccaagtaccgcaaggcccagcacgagctggacgatgcggaggagcgggcggacatggcgg 43582356
Query: 442 agtcccaggtcaacaagctgcggg 465
| |||||| ||||||||||||||
Sbjct: 43582357 aaacccaggccaacaagctgcggg 43582380
>Sscrofa_Chr10
|| Length = 79102373
Score = 61.9 bits (31), Expect = 4e-07
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 109 tggccctgaagggcgggaagaagcagatccagaagctggaggccagggtgagggagcttg 168
||||| ||||||| ||||||||||| ||||||||||||||| ||||||| |||| | |
Sbjct: 60004147 tggccttgaagggtgggaagaagcacatccagaagctggagagcagggtgcaggagttgg 60004206
Query: 169 aaaatgaggttgaaa 183
||| |||| ||||||
Sbjct: 60004207 aaagtgagcttgaaa 60004221
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,317,971
Number of extensions: 458
Number of successful extensions: 458
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 20
Length of query: 660
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 639
Effective length of database: 2,808,413,156
Effective search space: 1794576006684
Effective search space used: 1794576006684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)