Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007912
(1062 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069890.1| thymocyte nuclear protein 1 [Bos taurus]. 270 1e-72
>ref|NP_001069890.1| thymocyte nuclear protein 1 [Bos taurus].
Length = 196
Score = 270 bits (691), Expect = 1e-72
Identities = 146/229 (63%), Positives = 160/229 (69%), Gaps = 14/229 (6%)
Frame = +3
Query: 270 GPDKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKG 449
GPD KGPE KRTKTKN ASA+VENS LQ+T SED G+ L+ YWLMKSEPESRLEKG
Sbjct: 10 GPDMKGPEEKRTKTKNLGRASAQVENSSLQKTP-VSEDSGEALSSYWLMKSEPESRLEKG 68
Query: 450 VDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIV 629
VDVKFSIEDL+AQP+QTTCWDGVRNYQARNFLRAM+L+E+AFFYHSNCR+PGIAGL+KIV
Sbjct: 69 VDVKFSIEDLQAQPRQTTCWDGVRNYQARNFLRAMRLDEEAFFYHSNCREPGIAGLVKIV 128
Query: 630 KEAYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGG 809
KEAYPDHTQFEKN+P+YD SSKEDNPKWSM
Sbjct: 129 KEAYPDHTQFEKNNPYYDASSKEDNPKWSM------------------------------ 158
Query: 810 PLKNMVLFTRQRLSVQPLTR--------------EEFDFILSLEEKEPS 914
RLSVQ LTR +EFDFILSLEEKEPS
Sbjct: 159 -----------RLSVQRLTRGEDGPCLWTTCQNDQEFDFILSLEEKEPS 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,461,839
Number of extensions: 1190908
Number of successful extensions: 4298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4287
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007912
(1062 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546386.2| PREDICTED: similar to thymocyte protein thy28 i... 343 2e-94
>ref|XP_546386.2| PREDICTED: similar to thymocyte protein thy28 isoform 1 [Canis
familiaris].
Length = 243
Score = 343 bits (880), Expect = 2e-94
Identities = 164/213 (76%), Positives = 187/213 (87%)
Frame = +3
Query: 276 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 455
+ K P GK TKT+ S +V +S ++TS AS++CG N + YWLMKSEP+SR+EKGVD
Sbjct: 32 NSKRPAGKHTKTRKPTGTSTRVGDSSPEKTS-ASKNCGNNQSSYWLMKSEPQSRIEKGVD 90
Query: 456 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 635
VKFSIEDLKA+PKQT CWDGVRNYQARNFLRAMKLE+ AFFYHSNC++PGIAGL+KIVKE
Sbjct: 91 VKFSIEDLKAEPKQTACWDGVRNYQARNFLRAMKLEQKAFFYHSNCKEPGIAGLVKIVKE 150
Query: 636 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 815
AYPDHTQFEKN+P+YDPSSKEDNPKWSMVDVQFVR+MKR+I L ELK +HQAH+ATGGPL
Sbjct: 151 AYPDHTQFEKNNPYYDPSSKEDNPKWSMVDVQFVRLMKRYITLTELKANHQAHKATGGPL 210
Query: 816 KNMVLFTRQRLSVQPLTREEFDFILSLEEKEPS 914
KNM LFT RLSVQPLT EEF+FILSLEEKEPS
Sbjct: 211 KNMALFTHPRLSVQPLTPEEFEFILSLEEKEPS 243
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,118,236
Number of extensions: 1195238
Number of successful extensions: 4429
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4402
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007912
(1062 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357419.1| PREDICTED: thymocyte nuclear protein 1-like ... 441 e-124
Alignment gi|XP_003357417.1| PREDICTED: thymocyte nuclear protein 1-like ... 295 4e-80
>ref|XP_003357419.1| PREDICTED: thymocyte nuclear protein 1-like [Sus scrofa].
Length = 253
Score = 441 bits (1134), Expect = e-124
Identities = 213/213 (100%), Positives = 213/213 (100%)
Frame = +3
Query: 276 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 455
DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD
Sbjct: 41 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 100
Query: 456 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 635
VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE
Sbjct: 101 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 160
Query: 636 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 815
AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL
Sbjct: 161 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 220
Query: 816 KNMVLFTRQRLSVQPLTREEFDFILSLEEKEPS 914
KNMVLFTRQRLSVQPLTREEFDFILSLEEKEPS
Sbjct: 221 KNMVLFTRQRLSVQPLTREEFDFILSLEEKEPS 253
>ref|XP_003357417.1| PREDICTED: thymocyte nuclear protein 1-like [Sus scrofa].
Length = 230
Score = 295 bits (754), Expect = 4e-80
Identities = 141/146 (96%), Positives = 142/146 (97%)
Frame = +3
Query: 477 LKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAYPDHTQ 656
L+ KQTTCWDGV NYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAYPDHTQ
Sbjct: 85 LQHSAKQTTCWDGVANYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAYPDHTQ 144
Query: 657 FEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKNMVLFT 836
FEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKNMVLFT
Sbjct: 145 FEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKNMVLFT 204
Query: 837 RQRLSVQPLTREEFDFILSLEEKEPS 914
RQRLSVQPLTREEFDFILSLEEKEPS
Sbjct: 205 RQRLSVQPLTREEFDFILSLEEKEPS 230
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,105,473
Number of extensions: 819386
Number of successful extensions: 2662
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2661
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007912
(1062 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653126.1| thymocyte nuclear protein 1 [Mus musculus]. 363 e-101
>ref|NP_653126.1| thymocyte nuclear protein 1 [Mus musculus].
Length = 226
Score = 363 bits (933), Expect = e-101
Identities = 174/215 (80%), Positives = 195/215 (90%)
Frame = +3
Query: 270 GPDKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKG 449
GPD+K GKRTKT+N S K+ENS L+ T+ ++ GKNL+ YWLMKSEPESRLEKG
Sbjct: 13 GPDRKKLSGKRTKTENSESTSVKLENSSLEMTT-TFKNGGKNLSNYWLMKSEPESRLEKG 71
Query: 450 VDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIV 629
+D+KFSIEDLKAQPKQT CWDGVRNYQARNFLRAMKLE++AFFYHSNC++PGI GLMKIV
Sbjct: 72 IDMKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYHSNCKQPGIVGLMKIV 131
Query: 630 KEAYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGG 809
KEAYPDHTQFEK++PHYDPSSKED+PKWSMVDVQFVRMMKRFIPL ELKT+HQAH+ATGG
Sbjct: 132 KEAYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPLEELKTYHQAHKATGG 191
Query: 810 PLKNMVLFTRQRLSVQPLTREEFDFILSLEEKEPS 914
PLK+M LFTRQRLSVQPLT+EEFDFILSLEE EPS
Sbjct: 192 PLKSMTLFTRQRLSVQPLTQEEFDFILSLEETEPS 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,527,651
Number of extensions: 967329
Number of successful extensions: 3431
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3425
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007912
(1062 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032382.1| thymocyte nuclear protein 1 isoform 1 [Homo ... 375 e-104
Alignment gi|NP_954995.1| thymocyte nuclear protein 1 isoform 1 [Homo sap... 375 e-104
Alignment gi|NP_054893.1| thymocyte nuclear protein 1 isoform 1 [Homo sap... 375 e-104
Alignment gi|NP_001032381.1| thymocyte nuclear protein 1 isoform 2 [Homo ... 255 4e-68
Alignment gi|NP_954994.1| thymocyte nuclear protein 1 isoform 2 [Homo sap... 255 4e-68
>ref|NP_001032382.1| thymocyte nuclear protein 1 isoform 1 [Homo sapiens].
Length = 225
Score = 375 bits (964), Expect = e-104
Identities = 182/211 (86%), Positives = 200/211 (94%)
Frame = +3
Query: 282 KGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVDVK 461
KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLEKGVDVK
Sbjct: 16 KGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLEKGVDVK 74
Query: 462 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAY 641
FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMKIVKEAY
Sbjct: 75 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 134
Query: 642 PDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKN 821
PDHTQFEKN+PHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELK++HQAH+ATGGPLKN
Sbjct: 135 PDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKN 194
Query: 822 MVLFTRQRLSVQPLTREEFDFILSLEEKEPS 914
MVLFTRQRLS+QPLT+EEFDF+LSLEEKEPS
Sbjct: 195 MVLFTRQRLSIQPLTQEEFDFVLSLEEKEPS 225
>ref|NP_954995.1| thymocyte nuclear protein 1 isoform 1 [Homo sapiens].
Length = 225
Score = 375 bits (964), Expect = e-104
Identities = 182/211 (86%), Positives = 200/211 (94%)
Frame = +3
Query: 282 KGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVDVK 461
KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLEKGVDVK
Sbjct: 16 KGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLEKGVDVK 74
Query: 462 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAY 641
FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMKIVKEAY
Sbjct: 75 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 134
Query: 642 PDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKN 821
PDHTQFEKN+PHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELK++HQAH+ATGGPLKN
Sbjct: 135 PDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKN 194
Query: 822 MVLFTRQRLSVQPLTREEFDFILSLEEKEPS 914
MVLFTRQRLS+QPLT+EEFDF+LSLEEKEPS
Sbjct: 195 MVLFTRQRLSIQPLTQEEFDFVLSLEEKEPS 225
>ref|NP_054893.1| thymocyte nuclear protein 1 isoform 1 [Homo sapiens].
Length = 225
Score = 375 bits (964), Expect = e-104
Identities = 182/211 (86%), Positives = 200/211 (94%)
Frame = +3
Query: 282 KGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVDVK 461
KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLEKGVDVK
Sbjct: 16 KGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLEKGVDVK 74
Query: 462 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAY 641
FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMKIVKEAY
Sbjct: 75 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 134
Query: 642 PDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKN 821
PDHTQFEKN+PHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELK++HQAH+ATGGPLKN
Sbjct: 135 PDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKN 194
Query: 822 MVLFTRQRLSVQPLTREEFDFILSLEEKEPS 914
MVLFTRQRLS+QPLT+EEFDF+LSLEEKEPS
Sbjct: 195 MVLFTRQRLSIQPLTQEEFDFVLSLEEKEPS 225
>ref|NP_001032381.1| thymocyte nuclear protein 1 isoform 2 [Homo sapiens].
Length = 166
Score = 255 bits (652), Expect = 4e-68
Identities = 123/146 (84%), Positives = 135/146 (92%)
Frame = +3
Query: 282 KGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVDVK 461
KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLEKGVDVK
Sbjct: 16 KGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLEKGVDVK 74
Query: 462 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAY 641
FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMKIVKEAY
Sbjct: 75 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 134
Query: 642 PDHTQFEKNSPHYDPSSKEDNPKWSM 719
PDHTQFEKN+PHYDPSSKEDNPKWSM
Sbjct: 135 PDHTQFEKNNPHYDPSSKEDNPKWSM 160
>ref|NP_954994.1| thymocyte nuclear protein 1 isoform 2 [Homo sapiens].
Length = 166
Score = 255 bits (652), Expect = 4e-68
Identities = 123/146 (84%), Positives = 135/146 (92%)
Frame = +3
Query: 282 KGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVDVK 461
KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLEKGVDVK
Sbjct: 16 KGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLEKGVDVK 74
Query: 462 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAY 641
FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMKIVKEAY
Sbjct: 75 FSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY 134
Query: 642 PDHTQFEKNSPHYDPSSKEDNPKWSM 719
PDHTQFEKN+PHYDPSSKEDNPKWSM
Sbjct: 135 PDHTQFEKNNPHYDPSSKEDNPKWSM 160
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,196,606
Number of extensions: 1163600
Number of successful extensions: 4164
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4149
Number of HSP's successfully gapped: 5
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007912
(1062 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 460 e-127
>Sscrofa_Chr09
|| Length = 153670197
Score = 460 bits (232), Expect = e-127
Identities = 232/232 (100%)
Strand = Plus / Plus
Query: 45 aactggaagtccgggctcgcggcgagcggggaggtgggctggagtcgcaggtgtgagggc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366664 aactggaagtccgggctcgcggcgagcggggaggtgggctggagtcgcaggtgtgagggc 67366723
Query: 105 tagagcctcacgcgggtaaagggcggtgattaagagagtgaggaccaggagcgcttagcg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366724 tagagcctcacgcgggtaaagggcggtgattaagagagtgaggaccaggagcgcttagcg 67366783
Query: 165 gcgcgctctgcgcagtggcgatgcagacgtaggaaacgccccgccctgcgcgggagccct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366784 gcgcgctctgcgcagtggcgatgcagacgtaggaaacgccccgccctgcgcgggagccct 67366843
Query: 225 cgggacgccatggcgcgagctcggaagaggctggcgggtgccgctgggccag 276
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366844 cgggacgccatggcgcgagctcggaagaggctggcgggtgccgctgggccag 67366895
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 274 cagacaagaaggggccagaaggaaaacggactaaaacaaagaacgagtgtgaggcatctg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67368315 cagacaagaaggggccagaaggaaaacggactaaaacaaagaacgagtgtgaggcatctg 67368374
Query: 334 ctaaagtggagaactccggcctccaggagacttcagaagcctctgaagactgtgggaaga 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67368375 ctaaagtggagaactccggcctccaggagacttcagaagcctctgaagactgtgggaaga 67368434
Query: 394 atctcaacagatactggctgatgaagtcagagccagaaagccgactggagaaaggtgtag 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67368435 atctcaacagatactggctgatgaagtcagagccagaaagccgactggagaaaggtgtag 67368494
Query: 454 acgtgaag 461
||||||||
Sbjct: 67368495 acgtgaag 67368502
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Minus
Query: 274 cagacaagaaggggccagaaggaaaacggactaaaacaaagaacgagtgtgaggcatctg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67490213 cagacaagaaggggccagaaggaaaacggactaaaacaaagaacgagtgtgaggcatctg 67490154
Query: 334 ctaaagtggagaactccggcctccaggagacttcagaagcctctgaagactgtgggaaga 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67490153 ctaaagtggagaactccggcctccaggagacttcagaagcctctgaagactgtgggaaga 67490094
Query: 394 atctcaacagatactggctgatgaagtcagagccagaaagccgactggagaaaggtgtag 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67490093 atctcaacagatactggctgatgaagtcagagccagaaagccgactggagaaaggtgtag 67490034
Query: 454 acgtgaag 461
||||||||
Sbjct: 67490033 acgtgaag 67490026
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 719 ggtggacgtacagtttgttcggatgatgaagcgtttcattcccctggctgagctcaaaac 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370478 ggtggacgtacagtttgttcggatgatgaagcgtttcattcccctggctgagctcaaaac 67370537
Query: 779 ccatcaccaagctcatagagccactggtggtcccttaaaaaacatggttctcttcactcg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370538 ccatcaccaagctcatagagccactggtggtcccttaaaaaacatggttctcttcactcg 67370597
Query: 839 ccagagactctctgtccaacccctgacccgag 870
||||||||||||||||||||||||||||||||
Sbjct: 67370598 ccagagactctctgtccaacccctgacccgag 67370629
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 719 ggtggacgtacagtttgttcggatgatgaagcgtttcattcccctggctgagctcaaaac 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67488073 ggtggacgtacagtttgttcggatgatgaagcgtttcattcccctggctgagctcaaaac 67488014
Query: 779 ccatcaccaagctcatagagccactggtggtcccttaaaaaacatggttctcttcactcg 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67488013 ccatcaccaagctcatagagccactggtggtcccttaaaaaacatggttctcttcactcg 67487954
Query: 839 ccagagactctctgtccaacccctgacccgag 870
||||||||||||||||||||||||||||||||
Sbjct: 67487953 ccagagactctctgtccaacccctgacccgag 67487922
Score = 280 bits (141), Expect = 1e-72
Identities = 177/189 (93%), Gaps = 2/189 (1%)
Strand = Plus / Plus
Query: 869 agaggagtttgactttattttgagcctggaggaaaaggaacccagttaactgagatgctg 928
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 67370906 agaggagtttgactttattttgagcctggaggaaaaggaaccaagttaactgagatgctg 67370965
Query: 929 ctgctagaataggccagacgctgctctagagatgtccagctgccacaagacaagcagggc 988
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 67370966 ctgctagaataggcaagacgctgctctagagatgtccagctgccacaagacaagca-ggc 67371024
Query: 989 gtggggagcgtgcttgttatgttcaccc-gggttgtatgctgannnnnnnnttgagtact 1047
|||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 67371025 gtggggagcgtgcttgttatgttcacccggggttgtatgctgaggtggggtttgagtact 67371084
Query: 1048 ttgaataaa 1056
|||||||||
Sbjct: 67371085 ttgaataaa 67371093
Score = 280 bits (141), Expect = 1e-72
Identities = 177/189 (93%), Gaps = 2/189 (1%)
Strand = Plus / Minus
Query: 869 agaggagtttgactttattttgagcctggaggaaaaggaacccagttaactgagatgctg 928
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 67487645 agaggagtttgactttattttgagcctggaggaaaaggaaccaagttaactgagatgctg 67487586
Query: 929 ctgctagaataggccagacgctgctctagagatgtccagctgccacaagacaagcagggc 988
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 67487585 ctgctagaataggcaagacgctgctctagagatgtccagctgccacaagacaagca-ggc 67487527
Query: 989 gtggggagcgtgcttgttatgttcaccc-gggttgtatgctgannnnnnnnttgagtact 1047
|||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 67487526 gtggggagcgtgcttgttatgttcacccggggttgtatgctgaggtggggtttgagtact 67487467
Query: 1048 ttgaataaa 1056
|||||||||
Sbjct: 67487466 ttgaataaa 67487458
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 622 agattgtgaaggaggcttacccagaccacacacagtttgagaagaacagtccccattatg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370156 agattgtgaaggaggcttacccagaccacacacagtttgagaagaacagtccccattatg 67370215
Query: 682 atccatccagcaaagaagacaacccgaaatggtccatggt 721
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370216 atccatccagcaaagaagacaacccgaaatggtccatggt 67370255
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 622 agattgtgaaggaggcttacccagaccacacacagtttgagaagaacagtccccattatg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67488395 agattgtgaaggaggcttacccagaccacacacagtttgagaagaacagtccccattatg 67488336
Query: 682 atccatccagcaaagaagacaacccgaaatggtccatggt 721
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67488335 atccatccagcaaagaagacaacccgaaatggtccatggt 67488296
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 529 aggcccggaacttcctcagagccatgaagctggaggaagacgccttcttctaccatagca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67369535 aggcccggaacttcctcagagccatgaagctggaggaagacgccttcttctaccatagca 67369594
Query: 589 actgcagaaagccaggcatcgcagggcttatgaag 623
|||||||||||||||||||||||||||||||||||
Sbjct: 67369595 actgcagaaagccaggcatcgcagggcttatgaag 67369629
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 529 aggcccggaacttcctcagagccatgaagctggaggaagacgccttcttctaccatagca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67489016 aggcccggaacttcctcagagccatgaagctggaggaagacgccttcttctaccatagca 67488957
Query: 589 actgcagaaagccaggcatcgcagggcttatgaag 623
|||||||||||||||||||||||||||||||||||
Sbjct: 67488956 actgcagaaagccaggcatcgcagggcttatgaag 67488922
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 460 agttcagcattgaggatctcaaagcacagcccaagcagacaacatgctgggatggtgtcc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67489420 agttcagcattgaggatctcaaagcacagcccaagcagacaacatgctgggatggtgtcc 67489361
Query: 520 gcaactaccagg 531
||||||||||||
Sbjct: 67489360 gcaactaccagg 67489349
Score = 81.8 bits (41), Expect = 7e-13
Identities = 48/49 (97%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 470 tgaggatctcaaagcacagcccaagcagacaacatgctgggatggtgtc 518
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 67369143 tgaggatctcaaagcacagcc-aagcagacaacatgctgggatggtgtc 67369190
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,305,354
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 13
Length of query: 1062
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1041
Effective length of database: 2,808,413,156
Effective search space: 2923558095396
Effective search space used: 2923558095396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)