Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007913
(2570 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial ... 743 0.0
Alignment gi|NP_001069890.1| thymocyte nuclear protein 1 [Bos taurus]. 256 5e-68
Alignment gi|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase,... 248 2e-65
Alignment gi|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase... 234 2e-61
Alignment gi|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial ... 221 2e-57
Alignment gi|NP_001017933.1| short/branched chain specific acyl-CoA dehyd... 216 6e-56
Alignment gi|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, ... 195 2e-49
Alignment gi|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mito... 193 7e-49
Alignment gi|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase... 188 2e-47
Alignment gi|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial pr... 124 3e-28
>ref|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 416
Score = 743 bits (1919), Expect = 0.0
Identities = 366/416 (87%), Positives = 390/416 (93%)
Frame = +3
Query: 1290 VMLRGCCHRVWTRLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQE 1469
+MLRG C RV RL LRRG PA RR VVSCIDPS GL+EEQKEFQ+VAF+FAA+E
Sbjct: 1 MMLRGGCQRVGARLRGLRRGPRGPADGARRGVVSCIDPSMGLSEEQKEFQKVAFNFAARE 60
Query: 1470 MMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTST 1649
M P+MAEWDQKELFPVD MRKAA+LGFGGVYV+TDVGG+GLSRLDTS+IFEALATGCTST
Sbjct: 61 MAPHMAEWDQKELFPVDTMRKAAQLGFGGVYVQTDVGGAGLSRLDTSIIFEALATGCTST 120
Query: 1650 TAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQ 1829
TAYMSIHNMCVWIID FG+EEQRHR CPPLCTMEKFASYCLTEPGSGSDAASL+TSA RQ
Sbjct: 121 TAYMSIHNMCVWIIDRFGSEEQRHRLCPPLCTMEKFASYCLTEPGSGSDAASLMTSAVRQ 180
Query: 1830 GDHYILNGSKAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWN 2009
DHYILNGSKAFISGGGEADIYVVMCRTGGPG +GISCVVVEKGTPGLSFGKKEKKVGWN
Sbjct: 181 HDHYILNGSKAFISGGGEADIYVVMCRTGGPGPRGISCVVVEKGTPGLSFGKKEKKVGWN 240
Query: 2010 SQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHL 2189
SQPT+AVIFEDCAVPVANRIGDEGQGFLIA++GLNGGRINVASCSLGAAHASI+L RD+L
Sbjct: 241 SQPTQAVIFEDCAVPVANRIGDEGQGFLIAMKGLNGGRINVASCSLGAAHASIVLARDYL 300
Query: 2190 KVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFAT 2369
KVRKQFGEPLAN+QYLQF+LADMA +LVASRLMIR+AA ALQEEREDA+ LCSMAKLFAT
Sbjct: 301 KVRKQFGEPLANSQYLQFQLADMAARLVASRLMIRTAATALQEEREDAIVLCSMAKLFAT 360
Query: 2370 DECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQE 2537
DECF ICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLIS+SLLQE
Sbjct: 361 DECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISRSLLQE 416
>ref|NP_001069890.1| thymocyte nuclear protein 1 [Bos taurus].
Length = 196
Score = 256 bits (655), Expect = 5e-68
Identities = 139/224 (62%), Positives = 155/224 (69%), Gaps = 14/224 (6%)
Frame = -2
Query: 811 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 632
D KGPE KRTKTKN ASA+VENS LQ+T SED G+ L+ YWLMKSEPESRLEKGVD
Sbjct: 12 DMKGPEEKRTKTKNLGRASAQVENSSLQKTP-VSEDSGEALSSYWLMKSEPESRLEKGVD 70
Query: 631 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 452
VKFSIEDL+AQP+QTTCWDGVRNYQARNFLRAM+L+E+AFFYHSNCR+PGIAGL+KIVKE
Sbjct: 71 VKFSIEDLQAQPRQTTCWDGVRNYQARNFLRAMRLDEEAFFYHSNCREPGIAGLVKIVKE 130
Query: 451 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 272
AYPDHTQFEKN+P+YD SSKEDNPKWSM
Sbjct: 131 AYPDHTQFEKNNPYYDASSKEDNPKWSM-------------------------------- 158
Query: 271 KNMVLFTRQRLSVQPLTR--------------EEFDFILSLEKR 182
RLSVQ LTR +EFDFILSLE++
Sbjct: 159 ---------RLSVQRLTRGEDGPCLWTTCQNDQEFDFILSLEEK 193
>ref|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Bos taurus].
Length = 412
Score = 248 bits (633), Expect = 2e-65
Identities = 148/405 (36%), Positives = 238/405 (58%), Gaps = 2/405 (0%)
Frame = +3
Query: 1326 RLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKE 1505
R C L RG AP G R + + + S L E + ++ FA +E+ P A+ D++
Sbjct: 8 RACGLVRG--APWPWGWRRLHT-VYQSVELPETHQMLRQTCRDFAEKELFPIAAQVDKEH 64
Query: 1506 LFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHN-MCV 1682
FP ++K LG + V ++ G+GL L S+ E ++ GC ST MS++N + +
Sbjct: 65 RFPAAQVKKMGELGLMAMNVPEELSGAGLDYLAYSIAMEEISRGCASTGVIMSVNNSLYL 124
Query: 1683 WIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKA 1862
I FG +EQ+ ++ P + +K + L+EPG+GSDA + T+A GD ++L+G+KA
Sbjct: 125 GPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSDAGAAATTARADGDSWVLSGTKA 184
Query: 1863 FISGGGEADIYVVMCRTGGPGH-KGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFE 2039
+I+ EA VV T H KGIS +V TPGL+ GKKE K+G + T +IFE
Sbjct: 185 WITNAWEASAVVVFASTDRSLHNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFE 244
Query: 2040 DCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPL 2219
D +P + +G+ G GF IA++ L+ GRI +AS +LG A A++ + + R FG PL
Sbjct: 245 DRRIPKDSLLGEPGLGFKIAMQTLDTGRIGIASQALGIAQAALDCAVTYAENRSAFGAPL 304
Query: 2220 ANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQA 2399
Q +QFKLADMA L ++RL+ AA+ L++ ++ +MAKL A++ I +QA
Sbjct: 305 TKLQAIQFKLADMALALESARLLTWRAAM-LKDNKKPFTKEAAMAKLAASEAATAITHQA 363
Query: 2400 LQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQ 2534
+Q+ GG GY+K+ +++ RD+R+ +I EG++E+ R++++ LL+
Sbjct: 364 MQILGGMGYVKEMPAERHYRDARITEIYEGTSEIQRLVVAGHLLK 408
>ref|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Bos taurus].
Length = 421
Score = 234 bits (598), Expect = 2e-61
Identities = 128/383 (33%), Positives = 219/383 (57%), Gaps = 8/383 (2%)
Frame = +3
Query: 1398 DPSTGLN----EEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYV 1565
+P +G + E+QKEFQ A FA +E++P AE+D+ +PV ++++A LG ++
Sbjct: 32 EPGSGFSFEFTEQQKEFQATARKFAREEIIPLAAEYDKTGEYPVPLIKRAWELGLMNTHI 91
Query: 1566 RTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCT 1745
GG GL D+ +I E LA GCT + +++ + GN++Q+ ++ +
Sbjct: 92 PESCGGLGLGTFDSCLISEELAYGCTGVQTAIEANSLGQMPVIIAGNDQQQKKYLGRMTE 151
Query: 1746 MEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG--- 1916
+YC+TEP +GSD A + T AE++GD YI+NG K +I+ GG+A+ Y ++ R+
Sbjct: 152 EPLMCAYCVTEPVAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 211
Query: 1917 -GPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFL 2093
P K + +VE TPG+ G+KE +G TR ++FED VP N + EG GF
Sbjct: 212 KAPASKAFTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVRVPKENVLIGEGAGFK 271
Query: 2094 IALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLV 2273
IA+ + R VA+ ++G A ++ + RK FG+ L +Q + F LA+MA K+
Sbjct: 272 IAMGAFDKTRPPVAAAAVGLAQRALDEATKYALERKTFGKLLIEHQGISFLLAEMAMKVE 331
Query: 2274 ASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQY 2453
+RL + AA + R + S+AK +A D ++ + A+Q+ GG G+ +Y V++
Sbjct: 332 LARLSYQRAAWEVDSGRRNTY-YASIAKAYAGDIANQLASDAVQIFGGNGFNTEYPVEKL 390
Query: 2454 VRDSRVHQILEGSNEVMRMLISK 2522
+RD++++QI EG+ ++ R++I++
Sbjct: 391 MRDAKIYQIYEGTAQIQRLIIAR 413
>ref|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 426
Score = 221 bits (564), Expect = 2e-57
Identities = 126/388 (32%), Positives = 214/388 (55%), Gaps = 6/388 (1%)
Frame = +3
Query: 1380 SVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPV--DMMRKAARLGFG 1553
S++ D GLNEEQK+ ++ F + + P E DQ F + ++ LG
Sbjct: 34 SLLPVDDAVNGLNEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVL 93
Query: 1554 GVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIH-NMCVWIIDAFGNEEQRHRFC 1730
G+ GGSGL L+ ++ E ++ + H N+C+ I GNE Q+ ++
Sbjct: 94 GITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYL 153
Query: 1731 PPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCR 1910
P L + E + ++EP +GSD S+ AE++GDHY+LNG+K +I+ G +AD+ VV +
Sbjct: 154 PKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAK 213
Query: 1911 T---GGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEG 2081
T P +GI+ +VEKG PG S KK K+G T ++FEDC VP AN +G G
Sbjct: 214 TDVTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANILGHLG 273
Query: 2082 QGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMA 2261
+G + + GL+ R+ +A LG A + T +L +R+ FG+ + + Q +Q K+ADM
Sbjct: 274 KGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHMREAFGQKIGHFQLMQGKMADMY 333
Query: 2262 TKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYA 2441
T+L+A R + + A A +E C+ L++ + ++ +Q GG GY+ D+
Sbjct: 334 TRLMACRQYVYNVAKAC-DEGHCTTKDCAGVILYSAECATQVALDGIQCLGGNGYINDFP 392
Query: 2442 VQQYVRDSRVHQILEGSNEVMRMLISKS 2525
+ +++RD+++++I G++EV R++I ++
Sbjct: 393 MGRFLRDAKLYEIGAGTSEVRRLVIGRA 420
>ref|NP_001017933.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
[Bos taurus].
Length = 432
Score = 216 bits (551), Expect = 6e-56
Identities = 130/381 (34%), Positives = 210/381 (55%), Gaps = 2/381 (0%)
Frame = +3
Query: 1401 PSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVG 1580
P +E+ + FA +++ P +++ D+ +++ + G G+ + T G
Sbjct: 53 PLQTFTDEEMMIKSAVKKFAQEQVAPFVSKMDEDSKMEKSVIQGLFQQGLMGIEIDTKYG 112
Query: 1581 GSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCV-WIIDAFGNEEQRHRFCPPLCTMEKF 1757
G+G S + ++ E LA S I N + +I +G EEQ+ + P L T EK
Sbjct: 113 GTGASFFSSVLVIEELAKVDASVALVCDIQNTLINRMIGKYGTEEQKATYLPKLAT-EKA 171
Query: 1758 ASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG-GPGHKG 1934
+S C++E G+GSD+ ++ T A+++GD+YI+NGSK +IS A ++VVM G+KG
Sbjct: 172 SSICISETGAGSDSFAMKTRADKKGDYYIINGSKMWISSAEIAGLFVVMANADFSAGYKG 231
Query: 1935 ISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLN 2114
I+C +V+ T GL GK E K+G + T V FE+ VP N +G G G+ A+ LN
Sbjct: 232 ITCFLVDGDTEGLHVGKPENKLGIRASSTCPVTFENVKVPKTNILGQVGHGYKYAIGSLN 291
Query: 2115 GGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIR 2294
GRI +A+ LG A T ++K RKQFG + + Q LQ ++A MAT+L A+RL+
Sbjct: 292 EGRIGIAAQMLGVAQGCFDYTIPYIKERKQFGRRVFDFQGLQHQVAHMATQLEAARLLTY 351
Query: 2295 SAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVH 2474
+AA L+ R + SMAK A++ I ++ ++ GG GY K Y V++Y RD+++
Sbjct: 352 NAARLLEAGR-PMIKEASMAKYHASELAGLITSKCIEWMGGVGYTKSYPVEKYFRDAKIG 410
Query: 2475 QILEGSNEVMRMLISKSLLQE 2537
I EG++ + I+K + E
Sbjct: 411 TIYEGTSNIQLNTIAKCISAE 431
>ref|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial [Bos
taurus].
Length = 430
Score = 195 bits (495), Expect = 2e-49
Identities = 116/377 (30%), Positives = 202/377 (53%), Gaps = 5/377 (1%)
Frame = +3
Query: 1422 EQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRL 1601
E F+ F +E++P AEW++ ++ KA + G G+ + GG G
Sbjct: 56 EHDIFRESVRKFFQEEVIPYHAEWEKAGEVSRELWEKAGKQGLLGISIADHHGGIGGDLY 115
Query: 1602 DTSVIFEALA-TGCTSTTAYMSIHNMCVW-IIDAFGNEEQRHRFCPPLCTMEKFASYCLT 1775
+++++E A + CT +H+ V I +G+EEQ RF P + + + +T
Sbjct: 116 SSAIVWEEQAYSNCTGPG--FGLHSDIVMPYITNYGSEEQIKRFIPEMVAGKCIGAIAMT 173
Query: 1776 EPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGPGHK---GISCV 1946
EPG+GSD + T+A++ G +ILNGSK F++ G DI +++ T H GIS
Sbjct: 174 EPGAGSDLQGIRTNAKKDGSDWILNGSKVFVTNGWLCDIVIIVAITNREAHSPAHGISLF 233
Query: 1947 VVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRI 2126
+VE G G G+K K+G +Q T FED +P +G+E +G+ ++ L R+
Sbjct: 234 LVENGMKGFIKGRKLDKIGLKAQDTAEFFFEDVRLPAGALLGEENKGYYYLMQELPQERL 293
Query: 2127 NVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAV 2306
++ ++ A+ TRD++K RK FG+ +A+ Q ++ KLA++ T + +R + S
Sbjct: 294 LISEIAVSASEFMFEETRDYVKQRKAFGKTVADLQTVKHKLAELKTSICVTRAFVDSCLQ 353
Query: 2307 ALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILE 2486
+ +R D VA +MAK +A+D + LQ+HGG+GY+ + + + D+RV I
Sbjct: 354 LHRVKRLD-VATAAMAKYWASDLQNRVAYDCLQLHGGWGYMFECPIAKAYVDARVQTIYG 412
Query: 2487 GSNEVMRMLISKSLLQE 2537
G+NE+M+ LI++ ++ +
Sbjct: 413 GTNEIMKELIAREIIHD 429
>ref|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mitochondrial [Bos taurus].
Length = 594
Score = 193 bits (490), Expect = 7e-49
Identities = 121/355 (34%), Positives = 189/355 (53%), Gaps = 8/355 (2%)
Frame = +3
Query: 1494 DQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHN 1673
DQ+ P + + K LG G+ V + GG GLS + + E + + + +
Sbjct: 87 DQEGKIPDETLEKLKSLGLFGMQVPEEYGGLGLSNTMYARLAEVIGLDASIAVTLAAHQS 146
Query: 1674 MCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGD--HYIL 1847
+ + I G++EQ+ R+ P L + E A++CLTEP SGSDAAS+ T A D HY+L
Sbjct: 147 IGLKGIILAGSKEQKARYLPRLASGEHVAAFCLTEPASGSDAASIRTRATLSADKSHYVL 206
Query: 1848 NGSKAFISGGGEADIYVVMCRT-----GGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNS 2012
NGSK +++ GG A+++ V +T G I+ +VE+ G++ GK E K+G
Sbjct: 207 NGSKVWVTNGGLANVFTVFAKTEVVDSDGSVKDKITAFIVERDFGGVTNGKAEDKMGIRG 266
Query: 2013 QPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLK 2192
T V FE+ VPV N +G+ G GF +A+ LN GR ++ S G I +T ++
Sbjct: 267 SNTCEVHFENTRVPVENVLGEVGGGFKVAVNILNSGRFSMGSMVAGMLKKLIEMTAEYAC 326
Query: 2193 VRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEER-EDAVALCSMAKLFAT 2369
RKQF L+ +Q K + MA K M A L D +M K+F++
Sbjct: 327 TRKQFNRNLSEFGLIQEKFSLMAQKAYVMESMAYLTAAMLDAPGFPDCSIEAAMVKVFSS 386
Query: 2370 DECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQ 2534
+ + ++ALQ+ GG GY++DY ++ +RDSR+ I EG+NE++RM I+ + LQ
Sbjct: 387 EGAWTCVSEALQILGGLGYMRDYPYERLLRDSRILLIFEGTNEILRMYIALTGLQ 441
>ref|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Bos taurus].
Length = 655
Score = 188 bits (478), Expect = 2e-47
Identities = 119/380 (31%), Positives = 196/380 (51%), Gaps = 11/380 (2%)
Frame = +3
Query: 1413 LNEEQKEFQRVAFSFAAQ--EMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGS 1586
LNE+Q +F + + E + + A+ D E M+ LG G+ V ++GG
Sbjct: 94 LNEDQTQFLKELVGPVTRFFEEVNDAAKNDMLERVEETTMQGLKELGAFGLQVPNELGGV 153
Query: 1587 GLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWI-IDAFGNEEQRHRFCPPLCTMEKFAS 1763
GL + + E + + H + I FG + Q+ ++ P L + E A+
Sbjct: 154 GLCNTQYARLVEIVGMYDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAA 213
Query: 1764 YCLTEPGSGSDAASLLTSAERQ--GDHYILNGSKAFISGGGEADIYVVMCRTG------G 1919
+CLTEP SGSDAAS+ +SA G +Y LNGSK +IS GG ADI+ V +T G
Sbjct: 214 FCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPVTDTATG 273
Query: 1920 PGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIA 2099
+ I+ VVE+ G++ G EKK+G + T V F+ VP N +G+ G GF +A
Sbjct: 274 AVKEKITAFVVERSFGGVTHGPPEKKMGIKASNTAEVYFDGVRVPAENVLGEVGGGFKVA 333
Query: 2100 LRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVAS 2279
+ LN GR +A+ G I DH R QFGE + N +Q KLA MA +
Sbjct: 334 MHILNNGRFGMAAALAGTMKGIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVT 393
Query: 2280 RLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVR 2459
M + + + D +++K+F ++ +++ ++ +Q+ GG G++K+ V++ +R
Sbjct: 394 ESMAYMVSANMDQGSTDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLR 453
Query: 2460 DSRVHQILEGSNEVMRMLIS 2519
D R+ +I EG+N+++R+ ++
Sbjct: 454 DLRIFRIFEGTNDILRLFVA 473
>ref|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
Length = 438
Score = 124 bits (312), Expect = 3e-28
Identities = 99/362 (27%), Positives = 172/362 (47%), Gaps = 3/362 (0%)
Frame = +3
Query: 1452 SFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALA 1631
++ + +MP + ++ E+F +++ + LG G ++ +G+S + ++ L
Sbjct: 73 TYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTIQ-GYSCAGVSSVAYGLLARELE 131
Query: 1632 TGCTSTTAYMSIHNMCV-WIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASL 1808
+ + MS+ + V + I A+G+EEQ+ ++ P L E + LTEP GSD + +
Sbjct: 132 RVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGM 191
Query: 1809 LTSAERQGDH--YILNGSKAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFG 1982
T A YIL+GSK +I+ AD+ +V R +G ++EKG GLS
Sbjct: 192 ETRARHNPSSRSYILSGSKTWITNSPVADLLIVWARCEDSCIRGF---LLEKGMRGLSTP 248
Query: 1983 KKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHA 2162
+ E K + T +I +D VP N + G LN R + LGAA
Sbjct: 249 RIEGKFSLRASSTGMIIMDDVEVPEENVLPGVS-GLAGPFGCLNNARYGITWGVLGAAEF 307
Query: 2163 SIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVAL 2342
+ R + R QFG PLA NQ +Q KLADM T++ L L+++ + A +
Sbjct: 308 CLHTARQYTLDRIQFGVPLAKNQLIQKKLADMLTEITLG-LHACLQLGRLKDQDKAAPEM 366
Query: 2343 CSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISK 2522
S+ K + +I QA M GG G +Y V ++V + EG++++ +++ +
Sbjct: 367 VSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHVMNLESVNTYEGTHDIHALILGR 426
Query: 2523 SL 2528
++
Sbjct: 427 AI 428
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 105,899,442
Number of extensions: 3069877
Number of successful extensions: 13117
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 13027
Number of HSP's successfully gapped: 15
Length of query: 856
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 745
Effective length of database: 14,008,606
Effective search space: 10436411470
Effective search space used: 10436411470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007913
(2570 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536524.2| PREDICTED: similar to Acyl-CoA dehydrogenase fa... 710 0.0
Alignment gi|XP_546386.2| PREDICTED: similar to thymocyte protein thy28 i... 334 2e-91
Alignment gi|XP_534712.2| PREDICTED: similar to Acyl-CoA dehydrogenase, s... 244 4e-64
Alignment gi|XP_547328.2| PREDICTED: similar to Acyl-CoA dehydrogenase, m... 235 2e-61
Alignment gi|XP_535048.2| PREDICTED: similar to Acyl-CoA dehydrogenase, s... 206 7e-53
Alignment gi|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogen... 203 6e-52
Alignment gi|XP_536053.2| PREDICTED: similar to acyl-Coenzyme A dehydroge... 201 3e-51
Alignment gi|XP_857956.1| PREDICTED: similar to Isovaleryl-CoA dehydrogen... 197 5e-50
Alignment gi|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydroge... 191 4e-48
Alignment gi|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v... 190 7e-48
>ref|XP_536524.2| PREDICTED: similar to Acyl-CoA dehydrogenase family member 8,
mitochondrial precursor (ACAD-8) (Isobutyryl-CoA
dehydrogenase) (Activator-recruited cofactor 42 kDa
component) (ARC42) [Canis familiaris].
Length = 473
Score = 710 bits (1832), Expect = 0.0
Identities = 349/386 (90%), Positives = 370/386 (95%), Gaps = 8/386 (2%)
Frame = +3
Query: 1404 STGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGG 1583
S GLNE+QKEFQ+VAF FAA+EM PNMAEWDQKELFPVD MRKAA+LGFGGVYVRTDVGG
Sbjct: 88 SVGLNEDQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDAMRKAAQLGFGGVYVRTDVGG 147
Query: 1584 SGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFAS 1763
SGLSRLDTSVIFEALATGCTSTTAY+SIHNMCVW+ID FGNEEQRHRFCPPLCTMEKFAS
Sbjct: 148 SGLSRLDTSVIFEALATGCTSTTAYISIHNMCVWMIDTFGNEEQRHRFCPPLCTMEKFAS 207
Query: 1764 YCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGPGHKGISC 1943
YCLTEPGSGSDAASLLTSA+RQGDHYILNGSKAFISGGGE+DIYVVMCRTGGPG KGISC
Sbjct: 208 YCLTEPGSGSDAASLLTSAKRQGDHYILNGSKAFISGGGESDIYVVMCRTGGPGPKGISC 267
Query: 1944 VVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGR 2123
VVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIG+EGQGF+IA++GLNGGR
Sbjct: 268 VVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGNEGQGFIIAMKGLNGGR 327
Query: 2124 INVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAA 2303
INVASCSLGAAHAS++LTRD+L VRKQFGEPLANNQYLQFKLADMAT+LVASRL+IR+AA
Sbjct: 328 INVASCSLGAAHASVVLTRDYLSVRKQFGEPLANNQYLQFKLADMATRLVASRLIIRNAA 387
Query: 2304 VALQEEREDAVALCSMAKLFATDECF--------EICNQALQMHGGYGYLKDYAVQQYVR 2459
VALQEEREDAVALCSMAKLFATDECF +ICNQALQMHGGYGYLKDYAVQQYVR
Sbjct: 388 VALQEEREDAVALCSMAKLFATDECFAMRHYLWKKICNQALQMHGGYGYLKDYAVQQYVR 447
Query: 2460 DSRVHQILEGSNEVMRMLISKSLLQE 2537
DSRVHQILEGSNEVMRMLIS+SL +E
Sbjct: 448 DSRVHQILEGSNEVMRMLISRSLFEE 473
>ref|XP_546386.2| PREDICTED: similar to thymocyte protein thy28 isoform 1 [Canis
familiaris].
Length = 243
Score = 334 bits (857), Expect = 2e-91
Identities = 159/210 (75%), Positives = 184/210 (87%)
Frame = -2
Query: 811 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 632
+ K P GK TKT+ S +V +S ++TS AS++CG N + YWLMKSEP+SR+EKGVD
Sbjct: 32 NSKRPAGKHTKTRKPTGTSTRVGDSSPEKTS-ASKNCGNNQSSYWLMKSEPQSRIEKGVD 90
Query: 631 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 452
VKFSIEDLKA+PKQT CWDGVRNYQARNFLRAMKLE+ AFFYHSNC++PGIAGL+KIVKE
Sbjct: 91 VKFSIEDLKAEPKQTACWDGVRNYQARNFLRAMKLEQKAFFYHSNCKEPGIAGLVKIVKE 150
Query: 451 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 272
AYPDHTQFEKN+P+YDPSSKEDNPKWSMVDVQFVR+MKR+I L ELK +HQAH+ATGGPL
Sbjct: 151 AYPDHTQFEKNNPYYDPSSKEDNPKWSMVDVQFVRLMKRYITLTELKANHQAHKATGGPL 210
Query: 271 KNMVLFTRQRLSVQPLTREEFDFILSLEKR 182
KNM LFT RLSVQPLT EEF+FILSLE++
Sbjct: 211 KNMALFTHPRLSVQPLTPEEFEFILSLEEK 240
>ref|XP_534712.2| PREDICTED: similar to Acyl-CoA dehydrogenase, short-chain specific,
mitochondrial precursor (SCAD) (Butyryl-CoA
dehydrogenase) [Canis familiaris].
Length = 404
Score = 244 bits (622), Expect = 4e-64
Identities = 138/379 (36%), Positives = 230/379 (60%), Gaps = 2/379 (0%)
Frame = +3
Query: 1404 STGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGG 1583
S L E + ++ FA +E++P A+ D++ FP ++K LG + V + G
Sbjct: 23 SVELPETHQMLRQTCREFAEKELVPIAAQVDKEHRFPKAQVKKMGELGLLAMDVPEEFSG 82
Query: 1584 SGLSRLDTSVIFEALATGCTSTTAYMSIHN-MCVWIIDAFGNEEQRHRFCPPLCTMEKFA 1760
+GL L ++ E ++ GC ST MS++N + + I FG++EQ+ ++ P + +K
Sbjct: 83 AGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKIG 142
Query: 1761 SYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGP-GHKGI 1937
+ L+EPG+GSDA + T+A+ GD +ILNG+KA+I+ EA VV T +KGI
Sbjct: 143 CFALSEPGNGSDAGAASTTAQADGDAWILNGTKAWITNSWEASAAVVFASTDRSLQNKGI 202
Query: 1938 SCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNG 2117
S +V T GL+ GKKE K+G + T +IFEDC +P + +G+ G GF IA++ L+
Sbjct: 203 SAFLVPMPTSGLTLGKKEDKLGIRASSTANLIFEDCRIPKDSLLGEPGMGFKIAMQTLDM 262
Query: 2118 GRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRS 2297
GRI +A+ +LG A A++ ++ + R+ FG PL Q +QFKLADMA L ++RL+
Sbjct: 263 GRIGIAAQALGIAQAALDCAVNYAENRRAFGAPLTKLQSIQFKLADMALALESARLLTWR 322
Query: 2298 AAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQ 2477
AA+ L+++++ +MAKL A++ I +QA+Q+ GG GY+ + +++ RD+R+ +
Sbjct: 323 AAM-LKDKKQPFTKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITE 381
Query: 2478 ILEGSNEVMRMLISKSLLQ 2534
I EG++E+ R++I+ LL+
Sbjct: 382 IYEGTSEIQRLVIAGHLLK 400
>ref|XP_547328.2| PREDICTED: similar to Acyl-CoA dehydrogenase, medium-chain specific,
mitochondrial precursor (MCAD) [Canis familiaris].
Length = 444
Score = 235 bits (599), Expect = 2e-61
Identities = 129/383 (33%), Positives = 216/383 (56%), Gaps = 8/383 (2%)
Frame = +3
Query: 1398 DPSTGLN----EEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYV 1565
+P G N E+QKEFQ A FA +E++P AE+D+ +PV ++++A LG ++
Sbjct: 55 EPRLGFNFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIKRAWELGLMNTHI 114
Query: 1566 RTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCT 1745
GG GL D +I E LA GCT + +++ + GN++Q+ ++ L
Sbjct: 115 PESCGGLGLGTFDACLITEELAYGCTGVQTAIEANSLGQMPLIIAGNDQQQKKYLGRLTE 174
Query: 1746 MEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG--- 1916
+YC+TEPG+GSD A + T AE++GD YI+NG K +I+ GG+A+ Y ++ R+
Sbjct: 175 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 234
Query: 1917 -GPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFL 2093
P K + +VE TPG+ G+KE +G TR ++FED VP N + EG GF
Sbjct: 235 KTPAGKAFTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGEGAGFK 294
Query: 2094 IALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLV 2273
IA+ + R VA+ ++G ++ + RK FG+ L +Q + F LA+MA K+
Sbjct: 295 IAMGAFDKTRPPVAAGAVGLGQRALDEATKYALERKTFGKLLVEHQGISFLLAEMAMKVE 354
Query: 2274 ASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQY 2453
+R+ + AA + R + S+AK +A D ++ A+Q+ GG G+ +Y V++
Sbjct: 355 LARMSYQRAAWEVDTGRRNTY-FASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKL 413
Query: 2454 VRDSRVHQILEGSNEVMRMLISK 2522
+RD++++QI EG+ ++ R++I++
Sbjct: 414 MRDAKIYQIYEGTAQIQRLIIAR 436
>ref|XP_535048.2| PREDICTED: similar to Acyl-CoA dehydrogenase, short/branched chain
specific, mitochondrial precursor (SBCAD) (2-methyl
branched chain acyl-CoA dehydrogenase) (2-MEBCAD)
(2-methylbutyryl-coenzyme A dehydrogenase)
(2-methylbutyryl-CoA dehydrogenase)... [Canis
familiaris].
Length = 521
Score = 206 bits (525), Expect = 7e-53
Identities = 124/376 (32%), Positives = 205/376 (54%), Gaps = 2/376 (0%)
Frame = +3
Query: 1401 PSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVG 1580
P +E+ + FA + + P ++ D+ ++ + G G+ + T G
Sbjct: 142 PLQMFTDEEMMIKNTVKKFAQERVAPLVSTMDENSKMDPSIIEGLFQQGLMGIEIETKYG 201
Query: 1581 GSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVW-IIDAFGNEEQRHRFCPPLCTMEKF 1757
G+G S + ++ E LA S I N + ++ +G EEQ+ + L T EK
Sbjct: 202 GTGASFFSSILVIEELAKVDASVALVCDIQNTVINNLMRKYGTEEQKATYLTKLTT-EKV 260
Query: 1758 ASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGP-GHKG 1934
S CL+E G+GSD +L T A+++G++Y++NGSK +IS A +++VM G+KG
Sbjct: 261 GSICLSEAGAGSDLFALKTRADKKGNYYVINGSKMWISNAEYAGLFLVMVNVNPDLGYKG 320
Query: 1935 ISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLN 2114
++C VV++ T GL GK EKK+G + T A+ FE+ VP +N +G G G+ A+ LN
Sbjct: 321 LTCFVVDRDTEGLHIGKSEKKMGIRASSTCALTFENVKVPESNILGQIGHGYKHAIGILN 380
Query: 2115 GGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIR 2294
GRI +A+ LG A T ++K R QFG+ + + Q LQ ++A +AT+L A+RL+
Sbjct: 381 EGRIGIAAQMLGLAQGCFDYTVPYMKERMQFGKRIFDFQGLQHQVAHVATQLEAARLLTY 440
Query: 2295 SAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVH 2474
+ A L E + + SMAK +A + ++ ++ GG GY KDY V++Y RD+++
Sbjct: 441 NTA-RLLETGKPIIKEASMAKYYAAEVAGLTTSKCIEWMGGVGYTKDYPVEKYFRDAKIG 499
Query: 2475 QILEGSNEVMRMLISK 2522
I EG++ + I+K
Sbjct: 500 TIYEGTSNIQLNTIAK 515
>ref|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
precursor (IVD) isoform 1 [Canis familiaris].
Length = 423
Score = 203 bits (517), Expect = 6e-52
Identities = 122/402 (30%), Positives = 211/402 (52%), Gaps = 6/402 (1%)
Frame = +3
Query: 1338 LRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPV 1517
LR L + S++ D GL+ EQK+ ++ F + + P E D F
Sbjct: 17 LRAPLGSLTSRRAHSLLPVDDAINGLSAEQKQLRQTMAKFLQEHLAPQAQEIDHFNEFKN 76
Query: 1518 --DMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIH-NMCVWI 1688
+ ++ LG G+ GGSGL L+ ++ E ++ + H N+C+
Sbjct: 77 LREFWKQLGNLGVLGITAPAQYGGSGLGYLEQVLVMEEISRVSAAVGLSYGAHSNLCLNQ 136
Query: 1689 IDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFI 1868
I GNE Q+ ++ P L + E + ++EP +GSD S+ AE++GD+YILNG+K +I
Sbjct: 137 IVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDYYILNGNKFWI 196
Query: 1869 SGGGEADIYVVMCRTG---GPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFE 2039
+ G +ADI ++ +T P +GI+ +VEK PG S KK K+G T +IFE
Sbjct: 197 TNGPDADILIIYAKTDLAVVPASRGITAFIVEKNMPGFSTSKKLDKLGMRGSNTCELIFE 256
Query: 2040 DCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPL 2219
DC VP AN +G +G + + GL+ R+ ++ LG A + T +L R+ FG+ +
Sbjct: 257 DCKVPAANILGHLSKGVYVLMSGLDLERLVLSGGPLGLMQAVLDHTIPYLHTREAFGQKI 316
Query: 2220 ANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQA 2399
+ Q +Q K+ADM T+L+A R + + A A + A C+ L++ + +
Sbjct: 317 GHFQLMQGKMADMYTRLMACRQYVYNVAKACDQGHCTAKD-CAGVILYSAECATRVALDG 375
Query: 2400 LQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKS 2525
+Q G GY+ D+ + +++RD+++++I G++EV R++I ++
Sbjct: 376 IQCFGANGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRA 417
>ref|XP_536053.2| PREDICTED: similar to acyl-Coenzyme A dehydrogenase, long chain
precursor [Canis familiaris].
Length = 441
Score = 201 bits (511), Expect = 3e-51
Identities = 117/377 (31%), Positives = 202/377 (53%), Gaps = 3/377 (0%)
Frame = +3
Query: 1416 NEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLS 1595
+ E F+ F +E++P AEW++ ++ KA ++G GV + GG G
Sbjct: 65 SSEHDIFRESVRKFFQEEVVPYHAEWEKAGEVSRELWEKAGKVGLLGVNIAEHHGGIGGD 124
Query: 1596 RLDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLT 1775
T++I+E A S + ++ + I +G+EEQ F P + + + + +T
Sbjct: 125 LYSTAIIWEEQAYSNCSGPGFSLHSDIVMPYITKYGSEEQIKHFIPQMVSGKCIGAIAMT 184
Query: 1776 EPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGPGHK---GISCV 1946
EPG+GSD + T+A++ G +ILNGSK FIS G D+ +V+ T H GIS
Sbjct: 185 EPGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGWLCDVVIVVAVTNREAHSLAHGISLF 244
Query: 1947 VVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRI 2126
+VE G G GKK +K+G +Q T + FED +P + +G+E +GF ++ L R+
Sbjct: 245 LVENGMKGFIKGKKLQKMGLKAQDTSELFFEDVRLPASALLGEENRGFYYLMQELPQERL 304
Query: 2127 NVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAV 2306
+A + + TR+++K R FG+ +A+ Q +Q KLA++ T++ +R + S
Sbjct: 305 LIAELGISGSEFMFEETRNYVKERNVFGKKVAHIQTVQHKLAELKTQICVTRAFVDSCLQ 364
Query: 2307 ALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILE 2486
+++R D+ SMAK + ++ I +Q+HGG+GY+ DY V + D+R I
Sbjct: 365 LHEKKRLDSTT-ASMAKYWTSELQNRIAYDCVQLHGGWGYMWDYPVAKAYVDARAQPIYG 423
Query: 2487 GSNEVMRMLISKSLLQE 2537
G+NE+M+ LI++ ++ +
Sbjct: 424 GTNEIMKELIARKIVYD 440
>ref|XP_857956.1| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
precursor (IVD) isoform 2 [Canis familiaris].
Length = 429
Score = 197 bits (500), Expect = 5e-50
Identities = 122/408 (29%), Positives = 211/408 (51%), Gaps = 12/408 (2%)
Frame = +3
Query: 1338 LRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPV 1517
LR L + S++ D GL+ EQK+ ++ F + + P E D F
Sbjct: 17 LRAPLGSLTSRRAHSLLPVDDAINGLSAEQKQLRQTMAKFLQEHLAPQAQEIDHFNEFKN 76
Query: 1518 --DMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIH-NMCVWI 1688
+ ++ LG G+ GGSGL L+ ++ E ++ + H N+C+
Sbjct: 77 LREFWKQLGNLGVLGITAPAQYGGSGLGYLEQVLVMEEISRVSAAVGLSYGAHSNLCLNQ 136
Query: 1689 IDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQ------GDHYILN 1850
I GNE Q+ ++ P L + E + ++EP +GSD S+ AE++ GD+YILN
Sbjct: 137 IVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKANFLSLGDYYILN 196
Query: 1851 GSKAFISGGGEADIYVVMCRTG---GPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPT 2021
G+K +I+ G +ADI ++ +T P +GI+ +VEK PG S KK K+G T
Sbjct: 197 GNKFWITNGPDADILIIYAKTDLAVVPASRGITAFIVEKNMPGFSTSKKLDKLGMRGSNT 256
Query: 2022 RAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRK 2201
+IFEDC VP AN +G +G + + GL+ R+ ++ LG A + T +L R+
Sbjct: 257 CELIFEDCKVPAANILGHLSKGVYVLMSGLDLERLVLSGGPLGLMQAVLDHTIPYLHTRE 316
Query: 2202 QFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECF 2381
FG+ + + Q +Q K+ADM T+L+A R + + A A + A C+ L++ +
Sbjct: 317 AFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDQGHCTAKD-CAGVILYSAECAT 375
Query: 2382 EICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKS 2525
+ +Q G GY+ D+ + +++RD+++++I G++EV R++I ++
Sbjct: 376 RVALDGIQCFGANGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRA 423
>ref|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member 9
isoform 1 [Canis familiaris].
Length = 621
Score = 191 bits (484), Expect = 4e-48
Identities = 122/355 (34%), Positives = 193/355 (54%), Gaps = 8/355 (2%)
Frame = +3
Query: 1494 DQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHN 1673
D++ P + + K LG G+ V + GG GLS + + E + + +
Sbjct: 88 DREGKIPNETLEKLKNLGLFGMQVPEEYGGLGLSNTMYARLGEIIGLDGSIAVTLAAHQA 147
Query: 1674 MCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGD--HYIL 1847
+ + I GN+EQ+ ++ P L + E A++CLTEP SGSDAAS+ T A D HYIL
Sbjct: 148 IGLKGIILAGNKEQKAKYLPRLASGEHIAAFCLTEPTSGSDAASIKTRATLSEDKKHYIL 207
Query: 1848 NGSKAFISGGGEADIYVVMCRT-----GGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNS 2012
NGSK +I+ GG A+++ V +T G I+ ++VE+ G++ GK E K+G
Sbjct: 208 NGSKIWITNGGIANVFTVFAKTQVVDSDGSVKDKITALIVERDFGGVTNGKPEDKLGIRG 267
Query: 2013 QPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLK 2192
T V FE+ VP+ N +G+ G GF +A+ LN GR ++ S G I +T +
Sbjct: 268 SNTCEVHFENTKVPIENVLGEVGGGFKVAMNILNSGRFSMGSLVAGMLKKLIEMTAAYAC 327
Query: 2193 VRKQFGEPLANNQYLQFKLADMATK-LVASRLMIRSAAVALQEEREDAVALCSMAKLFAT 2369
RKQF + L+ +Q K A MA K V + +A + Q D +M K+F++
Sbjct: 328 TRKQFNKNLSEFGLIQEKFALMAQKTYVMESMAYLTAGMLDQPGFPDCSIEAAMVKVFSS 387
Query: 2370 DECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQ 2534
+ ++ ++ALQ+ GG GY++DY ++ +RDSR+ I EG+NE++RM I+ + LQ
Sbjct: 388 EGAWQCVSEALQVLGGSGYMRDYPYERLLRDSRILLIFEGTNEILRMYIALTGLQ 442
>ref|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
specific, mitochondrial precursor (VLCAD) isoform 7
[Canis familiaris].
Length = 522
Score = 190 bits (482), Expect = 7e-48
Identities = 118/380 (31%), Positives = 199/380 (52%), Gaps = 11/380 (2%)
Frame = +3
Query: 1413 LNEEQKEFQRVAFSFAAQ--EMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGS 1586
L+EEQ +F + ++ E + + A+ D E ++ LG G+ V +++GG
Sbjct: 89 LSEEQTQFLKELVGPVSRFFEEVNDPAKNDTLEKVEETTLQGLKELGAFGLQVPSELGGV 148
Query: 1587 GLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWI-IDAFGNEEQRHRFCPPLCTMEKFAS 1763
GL + + E + T + H + I FG + Q+ ++ P L + E A+
Sbjct: 149 GLCNTQYARLVEIVGTHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGESIAA 208
Query: 1764 YCLTEPGSGSDAASLLTSAERQ--GDHYILNGSKAFISGGGEADIYVVMCRTG------G 1919
+CLTEP SGSDAAS+ +SA G +Y LNGSK +IS GG AD++ V +T G
Sbjct: 209 FCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADVFTVFAKTPVTDAATG 268
Query: 1920 PGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIA 2099
+ I+ VVE+ G++ G EKK+G + T V F+ VP N +G+ G GF +A
Sbjct: 269 AVKEKITAFVVERSFGGVTHGPPEKKMGIKASNTAEVYFDSVRVPAENVLGEVGSGFKVA 328
Query: 2100 LRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVAS 2279
+ LN GR +A+ G I DH R QFGE + N +Q KLA MA +
Sbjct: 329 MHILNNGRFGMAAALAGTMRGIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVT 388
Query: 2280 RLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVR 2459
M + + + D +++K+F ++ +++ ++ +Q+ GG G++K+ V++ +R
Sbjct: 389 ESMAYMVSANMDQGSTDFQIEAAISKIFGSEAAWKVTDECIQILGGMGFMKEPGVERVLR 448
Query: 2460 DSRVHQILEGSNEVMRMLIS 2519
D R+ +I EG+N+++R+ ++
Sbjct: 449 DLRIFRIFEGTNDILRLFVA 468
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 110,512,789
Number of extensions: 3159250
Number of successful extensions: 13104
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 12989
Number of HSP's successfully gapped: 21
Length of query: 856
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 745
Effective length of database: 15,174,208
Effective search space: 11304784960
Effective search space used: 11304784960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007913
(2570 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230503.1| acyl-CoA dehydrogenase family, member 8 [Sus... 840 0.0
Alignment gi|XP_003357419.1| PREDICTED: thymocyte nuclear protein 1-like ... 432 e-121
Alignment gi|XP_003357417.1| PREDICTED: thymocyte nuclear protein 1-like ... 286 5e-77
Alignment gi|XP_003130140.2| PREDICTED: isobutyryl-CoA dehydrogenase, mit... 256 6e-68
Alignment gi|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mi... 242 6e-64
Alignment gi|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, m... 239 4e-63
Alignment gi|XP_001926332.2| PREDICTED: short/branched chain specific acy... 216 5e-56
Alignment gi|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial ... 209 8e-54
Alignment gi|NP_999062.1| long-chain specific acyl-CoA dehydrogenase, mit... 197 2e-50
Alignment gi|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mit... 190 3e-48
>ref|NP_001230503.1| acyl-CoA dehydrogenase family, member 8 [Sus scrofa].
Length = 415
Score = 840 bits (2171), Expect = 0.0
Identities = 413/415 (99%), Positives = 415/415 (100%)
Frame = +3
Query: 1293 MLRGCCHRVWTRLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEM 1472
MLRGCCHRVWTRLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEM
Sbjct: 1 MLRGCCHRVWTRLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEM 60
Query: 1473 MPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTT 1652
MPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTT
Sbjct: 61 MPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTT 120
Query: 1653 AYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQG 1832
AYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAE+QG
Sbjct: 121 AYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAEQQG 180
Query: 1833 DHYILNGSKAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNS 2012
DHYILNGSKAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNS
Sbjct: 181 DHYILNGSKAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNS 240
Query: 2013 QPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLK 2192
QPTRAVIFEDCAVPVANRIGDEGQGFLIA+RGLNGGRINVASCSLGAAHASIILTRDHLK
Sbjct: 241 QPTRAVIFEDCAVPVANRIGDEGQGFLIAMRGLNGGRINVASCSLGAAHASIILTRDHLK 300
Query: 2193 VRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATD 2372
VRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATD
Sbjct: 301 VRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATD 360
Query: 2373 ECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQE 2537
ECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQE
Sbjct: 361 ECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQE 415
>ref|XP_003357419.1| PREDICTED: thymocyte nuclear protein 1-like [Sus scrofa].
Length = 253
Score = 432 bits (1111), Expect = e-121
Identities = 208/210 (99%), Positives = 210/210 (100%)
Frame = -2
Query: 811 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 632
DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD
Sbjct: 41 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 100
Query: 631 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 452
VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE
Sbjct: 101 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 160
Query: 451 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 272
AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL
Sbjct: 161 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 220
Query: 271 KNMVLFTRQRLSVQPLTREEFDFILSLEKR 182
KNMVLFTRQRLSVQPLTREEFDFILSLE++
Sbjct: 221 KNMVLFTRQRLSVQPLTREEFDFILSLEEK 250
>ref|XP_003357417.1| PREDICTED: thymocyte nuclear protein 1-like [Sus scrofa].
Length = 230
Score = 286 bits (731), Expect = 5e-77
Identities = 136/143 (95%), Positives = 139/143 (97%)
Frame = -2
Query: 610 LKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAYPDHTQ 431
L+ KQTTCWDGV NYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAYPDHTQ
Sbjct: 85 LQHSAKQTTCWDGVANYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKEAYPDHTQ 144
Query: 430 FEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKNMVLFT 251
FEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKNMVLFT
Sbjct: 145 FEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPLKNMVLFT 204
Query: 250 RQRLSVQPLTREEFDFILSLEKR 182
RQRLSVQPLTREEFDFILSLE++
Sbjct: 205 RQRLSVQPLTREEFDFILSLEEK 227
>ref|XP_003130140.2| PREDICTED: isobutyryl-CoA dehydrogenase, mitochondrial-like, partial
[Sus scrofa].
Length = 144
Score = 256 bits (653), Expect = 6e-68
Identities = 125/127 (98%), Positives = 126/127 (99%)
Frame = +3
Query: 1857 KAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIF 2036
+AFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIF
Sbjct: 8 QAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIF 67
Query: 2037 EDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEP 2216
EDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEP
Sbjct: 68 EDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEP 127
Query: 2217 LANNQYL 2237
LANNQ L
Sbjct: 128 LANNQGL 134
>ref|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Sus scrofa].
Length = 413
Score = 242 bits (618), Expect = 6e-64
Identities = 143/405 (35%), Positives = 238/405 (58%), Gaps = 2/405 (0%)
Frame = +3
Query: 1326 RLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKE 1505
R C RG P ++ RR + I S L E + ++ FA +E++P A+ D++
Sbjct: 8 RACGPVRGALWP-RDCRR--LHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQVDKEH 64
Query: 1506 LFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHN-MCV 1682
FP ++K LG + V ++ G+GL L ++ E ++ GC ST MS++N + +
Sbjct: 65 RFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYL 124
Query: 1683 WIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKA 1862
I FG++EQ+ ++ P + +K + L+EPG+GSDA + T+A+ D ++L+G+KA
Sbjct: 125 GPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKA 184
Query: 1863 FISGGGEADIYVVMCRTGGP-GHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFE 2039
+I+ EA VV T +KGIS +V T GL+ GKKE K+G + T +IFE
Sbjct: 185 WITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTAGLTLGKKEDKLGIRASSTANLIFE 244
Query: 2040 DCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPL 2219
DC +P N +G+ G GF IA++ L+ GRI +AS +LG + A++ ++ + R+ FG PL
Sbjct: 245 DCRIPKENLLGEPGMGFKIAMKTLDMGRIGIASKALGISQAALDCAVNYAENRRAFGVPL 304
Query: 2220 ANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQA 2399
Q +QFKLADMA L ++RL+ AA+ ++ + +MAKL A++ I +QA
Sbjct: 305 TKLQGIQFKLADMALALESARLLTWRAAMLKDNKKNPFIKEPAMAKLAASEAATAITHQA 364
Query: 2400 LQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQ 2534
+Q+ GG GY+ + +++ RD+R+ +I EG++E+ R++I+ LL+
Sbjct: 365 IQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLK 409
>ref|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Sus scrofa].
Length = 421
Score = 239 bits (611), Expect = 4e-63
Identities = 134/390 (34%), Positives = 224/390 (57%), Gaps = 8/390 (2%)
Frame = +3
Query: 1377 RSVVSCIDPSTG----LNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARL 1544
++V C +P +G L E+QKEFQ A FA +E++P AE+D+ +PV ++++A L
Sbjct: 26 KAVPQC-EPGSGFSFKLTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWEL 84
Query: 1545 GFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHR 1724
G ++ GG GL +D+ +I E LA GCT + + + + GN +Q+ +
Sbjct: 85 GLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKK 144
Query: 1725 FCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVM 1904
+ + +YC+TEPG+GSD A + T AE++GD YI+NG K +I+ GG+A+ Y ++
Sbjct: 145 YLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLL 204
Query: 1905 CRTG----GPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIG 2072
R+ P K + +VE TPG+ G+KE +G TR ++FED VP N +
Sbjct: 205 ARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLT 264
Query: 2073 DEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLA 2252
EG GF IA+ + R +VA+ ++G A ++ + RK FG+ LA +Q + F LA
Sbjct: 265 GEGAGFKIAMGTFDKTRPSVAAGAVGLAQRALDEATKYALGRKTFGKLLAEHQGISFLLA 324
Query: 2253 DMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLK 2432
DMA K+ +RL + AA + R + S+AK +A D ++ A+Q+ GG G+
Sbjct: 325 DMAMKVDLARLSYQRAAWEIDSGRRNTY-YASIAKAYAADIANQLATDAVQVFGGNGFNT 383
Query: 2433 DYAVQQYVRDSRVHQILEGSNEVMRMLISK 2522
+Y V++ +RD++++QI EG+ ++ R++I++
Sbjct: 384 EYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 413
>ref|XP_001926332.2| PREDICTED: short/branched chain specific acyl-CoA dehydrogenase,
mitochondrial [Sus scrofa].
Length = 431
Score = 216 bits (550), Expect = 5e-56
Identities = 125/381 (32%), Positives = 210/381 (55%), Gaps = 2/381 (0%)
Frame = +3
Query: 1401 PSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVG 1580
P +E+ + FA +++ P +++ D+ ++ + G G+ G
Sbjct: 52 PLQTFTDEEMMIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYG 111
Query: 1581 GSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVW-IIDAFGNEEQRHRFCPPLCTMEKF 1757
G+G S + ++ E LA S + N + +I FG E Q+ + L T E+
Sbjct: 112 GTGASFFSSVLVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQL 170
Query: 1758 ASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGP-GHKG 1934
S+CL+EP +GSD+ SL T A++ GD+Y++NGSK +I+ +A +++VM G+KG
Sbjct: 171 GSFCLSEPSAGSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKG 230
Query: 1935 ISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLN 2114
I+C +V++ T GL GK E K+G + T V E+ VP AN +G G G+ A++ LN
Sbjct: 231 ITCFLVDRDTEGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLN 290
Query: 2115 GGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIR 2294
GRI +A+ LG A LT +LK R QFG+ + + Q LQ ++A AT+L A+RL+
Sbjct: 291 KGRIGIAAQMLGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTY 350
Query: 2295 SAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVH 2474
+AA L+ R + SMAK +A++ + N+ ++ G GY KDY +++Y RD+++
Sbjct: 351 NAARLLEAGR-PFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIG 409
Query: 2475 QILEGSNEVMRMLISKSLLQE 2537
I EG++ + I+K++ +E
Sbjct: 410 TIYEGTSNIQLNTIAKNVSKE 430
>ref|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial [Sus scrofa].
Length = 426
Score = 209 bits (531), Expect = 8e-54
Identities = 121/388 (31%), Positives = 211/388 (54%), Gaps = 6/388 (1%)
Frame = +3
Query: 1380 SVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPV--DMMRKAARLGFG 1553
S++ D GL+EEQK+ ++ F + + P E DQ F + ++ LG
Sbjct: 34 SLLPVDDVINGLSEEQKQLRQTMTKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVL 93
Query: 1554 GVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIH-NMCVWIIDAFGNEEQRHRFC 1730
G+ GG+GL L+ V+ E ++ + H N+C+ I GNE Q+ ++
Sbjct: 94 GITTPVQYGGTGLGYLEHVVVMEEISRASGAVGLSYGAHSNLCINQIVRNGNEAQKEKYL 153
Query: 1731 PPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCR 1910
P L + E + ++E +GSD S+ A+++GD+Y+LNG+K +I+ G +AD+ VV +
Sbjct: 154 PKLISGEYIGALAMSETNAGSDVVSMKLKADKKGDYYVLNGNKFWITNGPDADVLVVYAK 213
Query: 1911 T---GGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEG 2081
T P +GI+ +VEKG PG S KK K+G T +IFEDC VP N +G
Sbjct: 214 TDLAAVPPSRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAVNILGQLS 273
Query: 2082 QGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMA 2261
+G + + GL+ R+ +A LG A + T +L +R+ FG+ + + Q +Q K+ADM
Sbjct: 274 KGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHMREAFGQKIGHFQLMQGKMADMY 333
Query: 2262 TKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYA 2441
T+L+A R + + A A +E C+ L++ + ++ +Q GG GY+ D+
Sbjct: 334 TRLMACRQYVYNVAKAC-DEGHCTPKDCAGVVLYSAECATKVALDGIQCLGGNGYINDFP 392
Query: 2442 VQQYVRDSRVHQILEGSNEVMRMLISKS 2525
+ +++RD+++++I G++EV R++I ++
Sbjct: 393 MGRFLRDAKLYEIGAGTSEVRRLIIGRA 420
>ref|NP_999062.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Sus scrofa].
Length = 430
Score = 197 bits (502), Expect = 2e-50
Identities = 119/380 (31%), Positives = 207/380 (54%), Gaps = 6/380 (1%)
Frame = +3
Query: 1416 NEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLS 1595
+ E F+ F +E++P+ AEW++ ++ KA + G G+ + GG G
Sbjct: 54 SSEHDIFRESVRKFFQEEVIPHHAEWEKAGEVSRELWEKAGKQGLLGINIAERHGGIGGD 113
Query: 1596 RLDTSVIFEALA-TGCTSTTAYMSIHNMCVW-IIDAFGNEEQRHRFCPPLCTMEKFASYC 1769
++++E A + CT S+H+ V I +G+EEQ F P + + +
Sbjct: 114 LYSAAIVWEEQAYSNCTGPG--FSLHSDIVMPYIANYGSEEQIKHFIPQMTAGKCIGAIA 171
Query: 1770 LTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG----GPGHKGI 1937
+TEPG+GSD + T+A++ G +ILNGSK FI+ G +D+ +V+ T P H GI
Sbjct: 172 MTEPGAGSDLQGVRTNAKKDGSDWILNGSKVFITNGWLSDVVIVVAVTNREARSPAH-GI 230
Query: 1938 SCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNG 2117
S +VE G G G+K K+G +Q T + FED +P + +G+E +GF ++ L
Sbjct: 231 SLFLVENGMKGFVKGRKLHKIGLKAQDTAELFFEDVRLPASALLGEENKGFYYLMQELPQ 290
Query: 2118 GRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRS 2297
R+ +A ++ A+ TR+++K RK FG+ +A+ Q +Q KLA++ T + +R + S
Sbjct: 291 ERLLIAELAVSASEFMFEETRNYVKQRKAFGKTVAHIQTVQHKLAELKTHICVTRAFVDS 350
Query: 2298 AAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQ 2477
+ L E + A SMAK +A++ + +Q+HGG+GY+ +Y + + D+RV
Sbjct: 351 -CLQLHETKRLESAAASMAKYWASELQNSVAYDCVQLHGGWGYMWEYPIARAYVDARVQP 409
Query: 2478 ILEGSNEVMRMLISKSLLQE 2537
I G+NE+M+ LI++ ++ +
Sbjct: 410 IYGGTNEIMKELIAREIVHD 429
>ref|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Sus
scrofa].
Length = 349
Score = 190 bits (483), Expect = 3e-48
Identities = 107/339 (31%), Positives = 193/339 (56%), Gaps = 4/339 (1%)
Frame = +3
Query: 1521 MMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIH-NMCVWIIDA 1697
++++ + G+GG ++ GG+GL L+ V+ E ++ + H N+C+ I
Sbjct: 7 VLQECSLRGYGG-FLPVQYGGTGLGYLEHVVVMEEISRASGAVGLSYGAHSNLCLNQIVR 65
Query: 1698 FGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGG 1877
GNE Q+ ++ P L + E + ++E +GSD S+ A+++GD+Y+LNG+K +I+ G
Sbjct: 66 NGNEAQKEKYLPKLISGEYIGALAMSETNAGSDVVSMKLKADKKGDYYVLNGNKFWITNG 125
Query: 1878 GEADIYVVMCRT---GGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCA 2048
+AD+ VV +T P +GI+ +VEKG PG S KK K+G T +IFEDC
Sbjct: 126 PDADVLVVYAKTDLAAVPPSRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCK 185
Query: 2049 VPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANN 2228
VP N +G +G + + GL+ R+ +A LG A + T +L +R+ FG+ + +
Sbjct: 186 VPAVNILGQLSKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHMREAFGQKIGHF 245
Query: 2229 QYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQM 2408
Q +Q K+ADM T+L+A R + + A A +E C+ L++ + ++ +Q
Sbjct: 246 QLMQGKMADMYTRLMACRQYVYNVAKAC-DEGHCTPKDCAGVVLYSAECATKVALDGIQC 304
Query: 2409 HGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKS 2525
GG GY+ D+ + +++RD+++++I G++EV R++I ++
Sbjct: 305 LGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLIIGRA 343
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 68,387,279
Number of extensions: 1981516
Number of successful extensions: 8455
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 8382
Number of HSP's successfully gapped: 23
Length of query: 856
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 748
Effective length of database: 8,655,056
Effective search space: 6473981888
Effective search space used: 6473981888
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007913
(2570 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial pre... 716 0.0
Alignment gi|NP_653126.1| thymocyte nuclear protein 1 [Mus musculus]. 351 1e-96
Alignment gi|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mi... 252 9e-67
Alignment gi|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, m... 237 3e-62
Alignment gi|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial pre... 223 6e-58
Alignment gi|NP_080102.1| short/branched chain specific acyl-CoA dehydrog... 201 2e-51
Alignment gi|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitocho... 199 7e-51
Alignment gi|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mit... 196 6e-50
Alignment gi|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase... 186 6e-47
Alignment gi|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial pr... 119 2e-26
>ref|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 413
Score = 716 bits (1849), Expect = 0.0
Identities = 351/400 (87%), Positives = 379/400 (94%)
Frame = +3
Query: 1338 LRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPV 1517
LR L + A+ RS+ CIDPS GLNEEQK FQ+VAF FAA+EM PNMAEWDQKELFPV
Sbjct: 14 LRAALKSLAQTHHRSITFCIDPSLGLNEEQKGFQKVAFDFAAREMAPNMAEWDQKELFPV 73
Query: 1518 DMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWIIDA 1697
D+MRKAA+LGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAY+SIHNMC W+ID+
Sbjct: 74 DVMRKAAQLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDS 133
Query: 1698 FGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGG 1877
FGNEEQRH+FCPPLCTMEKFASYCLTEPGSGSDAASLLTSA++QGDHYILNGSKAFISGG
Sbjct: 134 FGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKQQGDHYILNGSKAFISGG 193
Query: 1878 GEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPV 2057
GE+DIYVVMCRTG G KGISC+VVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPV
Sbjct: 194 GESDIYVVMCRTGESGAKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPV 253
Query: 2058 ANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYL 2237
ANRIG EGQGFLIA++GLNGGRINVASCSLGAAHAS+ILT++HLKVRKQFG PLA +QYL
Sbjct: 254 ANRIGTEGQGFLIAMKGLNGGRINVASCSLGAAHASVILTQEHLKVRKQFGAPLARSQYL 313
Query: 2238 QFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGG 2417
QF+LADMATKLVASRLMIR+AAVALQEEREDAVALCSMAKLFAT+ECF ICNQALQMHGG
Sbjct: 314 QFQLADMATKLVASRLMIRTAAVALQEEREDAVALCSMAKLFATEECFAICNQALQMHGG 373
Query: 2418 YGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQE 2537
YGYLKDYAVQQY+RDSRVHQILEGSNEVMRMLIS++LLQ+
Sbjct: 374 YGYLKDYAVQQYMRDSRVHQILEGSNEVMRMLISRNLLQD 413
>ref|NP_653126.1| thymocyte nuclear protein 1 [Mus musculus].
Length = 226
Score = 351 bits (901), Expect = 1e-96
Identities = 168/209 (80%), Positives = 190/209 (90%)
Frame = -2
Query: 811 DKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLEKGVD 632
D+K GKRTKT+N S K+ENS L+ T+ ++ GKNL+ YWLMKSEPESRLEKG+D
Sbjct: 15 DRKKLSGKRTKTENSESTSVKLENSSLEMTT-TFKNGGKNLSNYWLMKSEPESRLEKGID 73
Query: 631 VKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMKIVKE 452
+KFSIEDLKAQPKQT CWDGVRNYQARNFLRAMKLE++AFFYHSNC++PGI GLMKIVKE
Sbjct: 74 MKFSIEDLKAQPKQTACWDGVRNYQARNFLRAMKLEDEAFFYHSNCKQPGIVGLMKIVKE 133
Query: 451 AYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRATGGPL 272
AYPDHTQFEK++PHYDPSSKED+PKWSMVDVQFVRMMKRFIPL ELKT+HQAH+ATGGPL
Sbjct: 134 AYPDHTQFEKSNPHYDPSSKEDDPKWSMVDVQFVRMMKRFIPLEELKTYHQAHKATGGPL 193
Query: 271 KNMVLFTRQRLSVQPLTREEFDFILSLEK 185
K+M LFTRQRLSVQPLT+EEFDFILSLE+
Sbjct: 194 KSMTLFTRQRLSVQPLTQEEFDFILSLEE 222
>ref|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Mus musculus].
Length = 412
Score = 252 bits (644), Expect = 9e-67
Identities = 142/379 (37%), Positives = 227/379 (59%), Gaps = 2/379 (0%)
Frame = +3
Query: 1404 STGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGG 1583
S L E + ++ FA +E++P A+ D++ LFP ++K LG + V ++ G
Sbjct: 31 SVELPETHQMLRQTCRDFAEKELVPIAAQLDREHLFPTAQVKKMGELGLLAMDVPEELSG 90
Query: 1584 SGLSRLDTSVIFEALATGCTSTTAYMSIHN-MCVWIIDAFGNEEQRHRFCPPLCTMEKFA 1760
+GL L S+ E ++ C ST MS++N + + I FG+ +Q+ ++ P +K
Sbjct: 91 AGLDYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIG 150
Query: 1761 SYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG-GPGHKGI 1937
+ L+EPG+GSDA + T+A +GD ++LNG+KA+I+ EA VV T +KGI
Sbjct: 151 CFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGI 210
Query: 1938 SCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNG 2117
S +V TPGL+ GKKE K+G + T +IFEDC +P N +G+ G GF IA++ L+
Sbjct: 211 SAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDM 270
Query: 2118 GRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRS 2297
GRI +AS +LG A AS+ + + R FG PL Q +QFKLADMA L ++RL+
Sbjct: 271 GRIGIASQALGIAQASLDCAVKYAENRNAFGAPLTKLQNIQFKLADMALALESARLLTWR 330
Query: 2298 AAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQ 2477
AA+ L++ ++ +MAKL A++ I +QA+Q+ GG GY+ + ++Y RD+R+ +
Sbjct: 331 AAM-LKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITE 389
Query: 2478 ILEGSNEVMRMLISKSLLQ 2534
I EG++E+ R++I+ LL+
Sbjct: 390 IYEGTSEIQRLVIAGHLLR 408
>ref|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Mus musculus].
Length = 421
Score = 237 bits (605), Expect = 3e-62
Identities = 127/379 (33%), Positives = 215/379 (56%), Gaps = 4/379 (1%)
Frame = +3
Query: 1413 LNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGL 1592
L E+QKEFQ A FA +E++P E+D+ +P ++++A LG ++ GG GL
Sbjct: 41 LTEQQKEFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWELGLINAHIPESCGGLGL 100
Query: 1593 SRLDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCL 1772
D +I E LA GCT + +++ + GN++Q+ ++ + +YC+
Sbjct: 101 GTFDACLITEELAYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCV 160
Query: 1773 TEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGG----PGHKGIS 1940
TEP +GSD A++ T AE++GD Y++NG K +I+ GG+A+ Y ++ R+ P K +
Sbjct: 161 TEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARSNPDPKVPASKAFT 220
Query: 1941 CVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGG 2120
+VE TPG+ GKKE +G TR + FED VP N + EG GF IA+ +
Sbjct: 221 GFIVEADTPGIHIGKKELNMGQRCSDTRGIAFEDVRVPKENVLIGEGAGFKIAMGAFDRT 280
Query: 2121 RINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSA 2300
R VA+ ++G A ++ + RK FG+ L +Q + F LA+MA K+ +RL + A
Sbjct: 281 RPTVAAGAVGLAQRALDEATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQRA 340
Query: 2301 AVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQI 2480
A + R + S+AK FA D ++ A+Q+ GGYG+ +Y V++ +RD++++QI
Sbjct: 341 AWEVDSGRRNTY-YASIAKAFAGDIANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQI 399
Query: 2481 LEGSNEVMRMLISKSLLQE 2537
EG+ ++ R++I++ +++
Sbjct: 400 YEGTAQIQRLIIAREHIEK 418
>ref|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 424
Score = 223 bits (568), Expect = 6e-58
Identities = 130/388 (33%), Positives = 212/388 (54%), Gaps = 6/388 (1%)
Frame = +3
Query: 1380 SVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPV--DMMRKAARLGFG 1553
S++ D GLNEEQK+ + F + + P E DQ F + ++ LG
Sbjct: 32 SILPVDDDINGLNEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVL 91
Query: 1554 GVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIH-NMCVWIIDAFGNEEQRHRFC 1730
G+ GGSGL L+ ++ E ++ + H N+CV I GNE Q+ ++
Sbjct: 92 GITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYL 151
Query: 1731 PPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCR 1910
P L + E + ++EP +GSD S+ AE++GDHY+LNG+K +I+ G +ADI VV +
Sbjct: 152 PKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAK 211
Query: 1911 T---GGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEG 2081
T P +GI+ +VEKG PG S KK K+G T ++FEDC VP AN + E
Sbjct: 212 TDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVLSQES 271
Query: 2082 QGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMA 2261
+G + + GL+ R+ +A LG A + T +L VR+ FG+ + Q +Q K+ADM
Sbjct: 272 KGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKMADMY 331
Query: 2262 TKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYA 2441
T+L+ASR + + A A +E C+ L+A + ++ +Q GG GY+ D+
Sbjct: 332 TRLMASRQYVYNVAKAC-DEGHIIPKDCAGVILYAAECATQVALDGIQCLGGNGYINDFP 390
Query: 2442 VQQYVRDSRVHQILEGSNEVMRMLISKS 2525
+ +++RD+++++I G++EV R++I ++
Sbjct: 391 MGRFLRDAKLYEIGAGTSEVRRLVIGRA 418
>ref|NP_080102.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
[Mus musculus].
Length = 432
Score = 201 bits (511), Expect = 2e-51
Identities = 119/378 (31%), Positives = 205/378 (54%), Gaps = 2/378 (0%)
Frame = +3
Query: 1401 PSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVG 1580
P L +E+ ++ FA + + P ++ D+ +++ + G G+ V G
Sbjct: 53 PLQTLTDEEIMMKQTVKKFAQEHVAPLVSSMDENSKMEKSVIQGLFQQGLMGIEVEAQYG 112
Query: 1581 GSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVW-IIDAFGNEEQRHRFCPPLCTMEKF 1757
G+ S + ++ E LA S I N + + +EEQ+ + P L T EK
Sbjct: 113 GTEASFFCSVLVIEELAKVDASVALLCDIQNTIINNLFRKHASEEQKATYLPKLVT-EKL 171
Query: 1758 ASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG-GPGHKG 1934
S+CL+E G+GSD+ ++ T A++ G++Y+LNGSK +IS A++++V G++G
Sbjct: 172 GSFCLSEAGAGSDSFAMKTRADKSGNYYVLNGSKMWISHAEHAELFLVFANVDPSSGYRG 231
Query: 1935 ISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLN 2114
I+C +V++ T G GK+E K+G + T + FE+ VP N +G G G+ A+ LN
Sbjct: 232 ITCFLVDRDTEGFQIGKRENKMGIRASSTCQLTFENVKVPETNILGKIGHGYKYAIGSLN 291
Query: 2115 GGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIR 2294
GRI +A+ LG A T ++K R QFG+ + + Q LQ ++A +AT+L A+RL+
Sbjct: 292 EGRIGIAAQMLGLAQGCFDYTIPYIKERMQFGKRIFDFQGLQHQVAQVATQLEATRLLTY 351
Query: 2295 SAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVH 2474
+AA L E + SMAK +A++ ++ ++ GG GY KDY V+++ RD+++
Sbjct: 352 NAA-RLVEAGRPFIKEASMAKYYASEVAGLTTSKCIEWMGGVGYTKDYPVEKFFRDAKIG 410
Query: 2475 QILEGSNEVMRMLISKSL 2528
I EG++ + I+K +
Sbjct: 411 TIYEGASNIQLNTIAKHI 428
>ref|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitochondrial precursor [Mus
musculus].
Length = 625
Score = 199 bits (507), Expect = 7e-51
Identities = 125/355 (35%), Positives = 195/355 (54%), Gaps = 8/355 (2%)
Frame = +3
Query: 1494 DQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHN 1673
DQ+ PVD + K LG G+ V + GG GLS + + E ++ + T +
Sbjct: 92 DQEGKIPVDTLEKLKSLGLFGIQVPEEYGGLGLSNTMYARLGEIISLDASITVTLAAHQA 151
Query: 1674 MCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGD--HYIL 1847
+ + I GNEEQ+ ++ P L + E A++CLTEP SGSDAAS+ T A D ++IL
Sbjct: 152 IGLKGIILVGNEEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSEDKKYFIL 211
Query: 1848 NGSKAFISGGGEADIYVVMCRT-----GGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNS 2012
NGSK +I+ GG A+I+ V +T G ++ +VE+ G++ GK E K+G
Sbjct: 212 NGSKVWITNGGLANIFTVFAKTEVVDSDGSKTDKMTAFIVERDFGGITNGKPEDKLGIRG 271
Query: 2013 QPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLK 2192
T V FE+ VPV N +G+ G GF +A+ LN GR ++ S G I LT ++
Sbjct: 272 SNTCEVHFENTRVPVENVLGEVGGGFKVAMNILNSGRFSMGSAVAGMLKKLIELTAEYAC 331
Query: 2193 VRKQFGEPLANNQYLQFKLADMATK-LVASRLMIRSAAVALQEEREDAVALCSMAKLFAT 2369
RKQF L+ +Q K A MA K V + ++ + Q D +M K+F++
Sbjct: 332 TRKQFNRNLSEFGLIQEKFALMAQKAYVMESMAYLTSGMLDQPGFPDCSIEAAMVKVFSS 391
Query: 2370 DECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQ 2534
+ ++ ++ALQ+ GG GY+KDY ++ +RD+R+ I EG+NE++R+ I+ + LQ
Sbjct: 392 EAAWQCVSEALQILGGSGYMKDYPYERMLRDARILLIFEGTNEILRLFIALTGLQ 446
>ref|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Mus musculus].
Length = 430
Score = 196 bits (499), Expect = 6e-50
Identities = 120/380 (31%), Positives = 206/380 (54%), Gaps = 6/380 (1%)
Frame = +3
Query: 1416 NEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLS 1595
+ E F+ F +E++P+ EW++ ++ KA + G G+ + GG G
Sbjct: 54 SSEHDIFRESVRKFFQEEVIPHHTEWEKAGEVSREVWEKAGKQGLLGINIAEKHGGIGGD 113
Query: 1596 RLDTSVIFEALA-TGCTSTTAYMSIHNMCVW-IIDAFGNEEQRHRFCPPLCTMEKFASYC 1769
L T+V +E A + CT S+H+ V I +G +EQ +F P + + +
Sbjct: 114 LLSTAVTWEEQAYSNCTGPG--FSLHSDIVMPYIANYGTKEQIEKFIPQMTAGKCIGAIA 171
Query: 1770 LTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG----GPGHKGI 1937
+TEPG+GSD + T+A+R G +ILNGSK FI+ G +D+ +V+ T P H GI
Sbjct: 172 MTEPGAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVTNREARSPAH-GI 230
Query: 1938 SCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNG 2117
S +VE G G G+K K+G +Q T + FED +P +G+E +GF ++ L
Sbjct: 231 SLFLVENGMKGFIKGRKLHKMGMKAQDTAELFFEDVRLPANALLGEENKGFYYLMQELPQ 290
Query: 2118 GRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRS 2297
R+ +A ++ A TR+++K RK FG+ +A+ Q +Q KLA++ T + +R + S
Sbjct: 291 ERLLIAELAISACEFMFEETRNYVKQRKAFGKTVAHIQTVQHKLAELKTHICVTRAFVDS 350
Query: 2298 AAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQ 2477
+ +R D+ SMAK +A++ + + +Q+HGG+GY+ +Y + + D+RV
Sbjct: 351 CLQLHETKRLDS-GSASMAKYWASELQNSVAYECVQLHGGWGYMWEYPIAKAYVDARVQP 409
Query: 2478 ILEGSNEVMRMLISKSLLQE 2537
I G+NE+M+ LI++ ++ +
Sbjct: 410 IYGGTNEIMKELIARQIVSD 429
>ref|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Mus musculus].
Length = 656
Score = 186 bits (473), Expect = 6e-47
Identities = 117/380 (30%), Positives = 202/380 (53%), Gaps = 11/380 (2%)
Frame = +3
Query: 1413 LNEEQKEFQRVAFSFAAQ--EMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGS 1586
L+EEQ +F + A+ E + + A+ D E D ++ LG G+ V +++GG
Sbjct: 95 LSEEQAQFLKELVGPVARFFEEVNDPAKNDALEKVEDDTLQGLKELGAFGLQVPSELGGL 154
Query: 1587 GLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWI-IDAFGNEEQRHRFCPPLCTMEKFAS 1763
GLS + + E + + + H + I +G + QR ++ P + + + A+
Sbjct: 155 GLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQALAA 214
Query: 1764 YCLTEPGSGSDAASLLTSAERQ--GDHYILNGSKAFISGGGEADIYVVMCRTG------G 1919
+CLTEP SGSD AS+ +SA G +Y LNGSK +IS GG ADI+ V +T G
Sbjct: 215 FCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKDAATG 274
Query: 1920 PGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIA 2099
+ I+ VVE+ G++ G EKK+G + T V F+ VP N +G+ G GF +A
Sbjct: 275 AVKEKITAFVVERSFGGVTHGLPEKKMGIKASNTSEVYFDGVKVPSENVLGEVGDGFKVA 334
Query: 2100 LRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVAS 2279
+ LN GR +A+ G + I DH R QFG+ + N +Q KLA MA +
Sbjct: 335 VNILNNGRFGMAATLAGTMKSLIAKAVDHATNRTQFGDKIHNFGVIQEKLARMAILQYVT 394
Query: 2280 RLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVR 2459
M + + + +D +++K+F ++ +++ ++ +Q+ GG G++K+ V++ +R
Sbjct: 395 ESMAYMLSANMDQGFKDFQIEAAISKIFCSEAAWKVADECIQIMGGMGFMKEPGVERVLR 454
Query: 2460 DSRVHQILEGSNEVMRMLIS 2519
D R+ +I EG+N+++R+ ++
Sbjct: 455 DIRIFRIFEGANDILRLFVA 474
>ref|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
Length = 438
Score = 119 bits (297), Expect = 2e-26
Identities = 105/400 (26%), Positives = 184/400 (46%), Gaps = 10/400 (2%)
Frame = +3
Query: 1359 PAKNGRRSVVSCIDP---STGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMR 1529
PAK+ R V DP L ++K + ++ + +M + ++ E+F D++
Sbjct: 40 PAKSSR-PVFDWKDPLILEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVY 98
Query: 1530 KAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCVWI-IDAFGN 1706
+ LG G ++ G +G+S + ++ L + + MS+ + V I +G+
Sbjct: 99 EMGELGVLGPTIK-GYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGS 157
Query: 1707 EEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQGDH--YILNGSKAFISGGG 1880
EEQR ++ P L E + LTEP GSD + T A + Y L+G+K +I+
Sbjct: 158 EEQRQKYLPGLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSP 217
Query: 1881 EADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVA 2060
AD+++V R +G ++EKG GLS + E K + T +I + VP
Sbjct: 218 VADLFIVWARCEDNCIRGF---ILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEE 274
Query: 2061 NRIGDEGQGFLIALRG----LNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANN 2228
N + + + +L G LN R + LGAA + R + R QFG PLA N
Sbjct: 275 NVLPN-----VSSLAGPFGCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARN 329
Query: 2229 QYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQALQM 2408
Q +Q KLADM T++ L L+++ + + SM K + +I QA +
Sbjct: 330 QLVQKKLADMLTEITLG-LHACLQLGRLKDQDKATPEMVSMLKRNNCGKALDIARQARDI 388
Query: 2409 HGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSL 2528
GG G +Y V ++ + EG++++ +++ +++
Sbjct: 389 LGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 428
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 91,353,988
Number of extensions: 2581585
Number of successful extensions: 10508
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 10435
Number of HSP's successfully gapped: 15
Length of query: 856
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 746
Effective length of database: 12,313,599
Effective search space: 9185944854
Effective search space used: 9185944854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007913
(2570 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055199.1| isobutyryl-CoA dehydrogenase, mitochondrial pre... 735 0.0
Alignment gi|NP_001032382.1| thymocyte nuclear protein 1 isoform 1 [Homo ... 367 e-101
Alignment gi|NP_954995.1| thymocyte nuclear protein 1 isoform 1 [Homo sap... 367 e-101
Alignment gi|NP_054893.1| thymocyte nuclear protein 1 isoform 1 [Homo sap... 367 e-101
Alignment gi|NP_001032381.1| thymocyte nuclear protein 1 isoform 2 [Homo ... 256 9e-68
Alignment gi|NP_954994.1| thymocyte nuclear protein 1 isoform 2 [Homo sap... 256 9e-68
Alignment gi|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mi... 248 2e-65
Alignment gi|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase... 237 3e-62
Alignment gi|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, m... 237 3e-62
Alignment gi|NP_001600.1| short/branched chain specific acyl-CoA dehydrog... 222 2e-57
>ref|NP_055199.1| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Homo sapiens].
Length = 415
Score = 735 bits (1897), Expect = 0.0
Identities = 360/415 (86%), Positives = 387/415 (93%)
Frame = +3
Query: 1293 MLRGCCHRVWTRLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEM 1472
ML C R RL L GL + G RS+ SCIDPS GLNEEQKEFQ+VAF FAA+EM
Sbjct: 1 MLWSGCRRFGARLGCLPGGLRVLVQTGHRSLTSCIDPSMGLNEEQKEFQKVAFDFAAREM 60
Query: 1473 MPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTT 1652
PNMAEWDQKELFPVD+MRKAA+LGFGGVY++TDVGGSGLSRLDTSVIFEALATGCTSTT
Sbjct: 61 APNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTT 120
Query: 1653 AYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAERQG 1832
AY+SIHNMC W+ID+FGNEEQRH+FCPPLCTMEKFASYCLTEPGSGSDAASLLTSA++QG
Sbjct: 121 AYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQG 180
Query: 1833 DHYILNGSKAFISGGGEADIYVVMCRTGGPGHKGISCVVVEKGTPGLSFGKKEKKVGWNS 2012
DHYILNGSKAFISG GE+DIYVVMCRTGGPG KGISC+VVEKGTPGLSFGKKEKKVGWNS
Sbjct: 181 DHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNS 240
Query: 2013 QPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRINVASCSLGAAHASIILTRDHLK 2192
QPTRAVIFEDCAVPVANRIG EGQGFLIA+RGLNGGRIN+ASCSLGAAHAS+ILTRDHL
Sbjct: 241 QPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLN 300
Query: 2193 VRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATD 2372
VRKQFGEPLA+NQYLQF LADMAT+LVA+RLM+R+AAVALQEER+DAVALCSMAKLFATD
Sbjct: 301 VRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATD 360
Query: 2373 ECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQE 2537
ECF ICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMR+LIS+SLLQE
Sbjct: 361 ECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 415
>ref|NP_001032382.1| thymocyte nuclear protein 1 isoform 1 [Homo sapiens].
Length = 225
Score = 367 bits (942), Expect = e-101
Identities = 178/214 (83%), Positives = 199/214 (92%)
Frame = -2
Query: 823 GKALDKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLE 644
G + KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLE
Sbjct: 10 GTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLE 68
Query: 643 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMK 464
KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMK
Sbjct: 69 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMK 128
Query: 463 IVKEAYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRAT 284
IVKEAYPDHTQFEKN+PHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELK++HQAH+AT
Sbjct: 129 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKAT 188
Query: 283 GGPLKNMVLFTRQRLSVQPLTREEFDFILSLEKR 182
GGPLKNMVLFTRQRLS+QPLT+EEFDF+LSLE++
Sbjct: 189 GGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEK 222
>ref|NP_954995.1| thymocyte nuclear protein 1 isoform 1 [Homo sapiens].
Length = 225
Score = 367 bits (942), Expect = e-101
Identities = 178/214 (83%), Positives = 199/214 (92%)
Frame = -2
Query: 823 GKALDKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLE 644
G + KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLE
Sbjct: 10 GTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLE 68
Query: 643 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMK 464
KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMK
Sbjct: 69 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMK 128
Query: 463 IVKEAYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRAT 284
IVKEAYPDHTQFEKN+PHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELK++HQAH+AT
Sbjct: 129 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKAT 188
Query: 283 GGPLKNMVLFTRQRLSVQPLTREEFDFILSLEKR 182
GGPLKNMVLFTRQRLS+QPLT+EEFDF+LSLE++
Sbjct: 189 GGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEK 222
>ref|NP_054893.1| thymocyte nuclear protein 1 isoform 1 [Homo sapiens].
Length = 225
Score = 367 bits (942), Expect = e-101
Identities = 178/214 (83%), Positives = 199/214 (92%)
Frame = -2
Query: 823 GKALDKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLE 644
G + KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLE
Sbjct: 10 GTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLE 68
Query: 643 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMK 464
KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMK
Sbjct: 69 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMK 128
Query: 463 IVKEAYPDHTQFEKNSPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKTHHQAHRAT 284
IVKEAYPDHTQFEKN+PHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELK++HQAH+AT
Sbjct: 129 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKAT 188
Query: 283 GGPLKNMVLFTRQRLSVQPLTREEFDFILSLEKR 182
GGPLKNMVLFTRQRLS+QPLT+EEFDF+LSLE++
Sbjct: 189 GGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEK 222
>ref|NP_001032381.1| thymocyte nuclear protein 1 isoform 2 [Homo sapiens].
Length = 166
Score = 256 bits (653), Expect = 9e-68
Identities = 124/152 (81%), Positives = 137/152 (90%)
Frame = -2
Query: 823 GKALDKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLE 644
G + KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLE
Sbjct: 10 GTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLE 68
Query: 643 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMK 464
KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMK
Sbjct: 69 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMK 128
Query: 463 IVKEAYPDHTQFEKNSPHYDPSSKEDNPKWSM 368
IVKEAYPDHTQFEKN+PHYDPSSKEDNPKWSM
Sbjct: 129 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSM 160
>ref|NP_954994.1| thymocyte nuclear protein 1 isoform 2 [Homo sapiens].
Length = 166
Score = 256 bits (653), Expect = 9e-68
Identities = 124/152 (81%), Positives = 137/152 (90%)
Frame = -2
Query: 823 GKALDKKGPEGKRTKTKNECEASAKVENSGLQETSEASEDCGKNLNRYWLMKSEPESRLE 644
G + KG GKRTKT+N EA AKVE+S Q+TS A+++C KNL+ +WLMKSEPESRLE
Sbjct: 10 GTSGSDKGLSGKRTKTENSGEALAKVEDSNPQKTS-ATKNCLKNLSSHWLMKSEPESRLE 68
Query: 643 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLEEDAFFYHSNCRKPGIAGLMK 464
KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKL E+AFFYHSNC++PGIAGLMK
Sbjct: 69 KGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLRAMKLGEEAFFYHSNCKEPGIAGLMK 128
Query: 463 IVKEAYPDHTQFEKNSPHYDPSSKEDNPKWSM 368
IVKEAYPDHTQFEKN+PHYDPSSKEDNPKWSM
Sbjct: 129 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSM 160
>ref|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
[Homo sapiens].
Length = 412
Score = 248 bits (634), Expect = 2e-65
Identities = 140/379 (36%), Positives = 228/379 (60%), Gaps = 2/379 (0%)
Frame = +3
Query: 1404 STGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGG 1583
S L E + + FA +E+ P A+ D++ LFP ++K LG + V ++GG
Sbjct: 31 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGG 90
Query: 1584 SGLSRLDTSVIFEALATGCTSTTAYMSIHN-MCVWIIDAFGNEEQRHRFCPPLCTMEKFA 1760
+GL L ++ E ++ GC ST MS++N + + I FG++EQ+ + P + +K
Sbjct: 91 AGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIG 150
Query: 1761 SYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGP-GHKGI 1937
+ L+EPG+GSDA + T+A +GD ++LNG+KA+I+ EA VV T +KGI
Sbjct: 151 CFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKGI 210
Query: 1938 SCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNG 2117
S +V TPGL+ GKKE K+G T +IFEDC +P + +G+ G GF IA++ L+
Sbjct: 211 SAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDM 270
Query: 2118 GRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRS 2297
GRI +AS +LG A ++ ++ + R FG PL Q +QFKLADMA L ++RL+
Sbjct: 271 GRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWR 330
Query: 2298 AAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQ 2477
AA+ L++ ++ + +MAKL A++ I +QA+Q+ GG GY+ + +++ RD+R+ +
Sbjct: 331 AAM-LKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITE 389
Query: 2478 ILEGSNEVMRMLISKSLLQ 2534
I EG++E+ R++I+ LL+
Sbjct: 390 IYEGTSEIQRLVIAGHLLR 408
>ref|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform b
precursor [Homo sapiens].
Length = 425
Score = 237 bits (605), Expect = 3e-62
Identities = 126/372 (33%), Positives = 216/372 (58%), Gaps = 4/372 (1%)
Frame = +3
Query: 1419 EEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSR 1598
E+QKEFQ A FA +E++P AE+D+ +PV ++R+A LG ++ + GG GL
Sbjct: 47 EQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGT 106
Query: 1599 LDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTE 1778
D +I E LA GCT + +++ I GN++Q+ ++ + +YC+TE
Sbjct: 107 FDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTE 166
Query: 1779 PGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG----GPGHKGISCV 1946
PG+GSD A + T AE++GD YI+NG K +I+ GG+A+ Y ++ R+ P +K +
Sbjct: 167 PGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGF 226
Query: 1947 VVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRI 2126
+VE TPG+ G+KE +G TR ++FED VP N + +G GF +A+ + R
Sbjct: 227 IVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRP 286
Query: 2127 NVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAV 2306
VA+ ++G A ++ + RK FG+ L +Q + F LA+MA K+ +R+ + AA
Sbjct: 287 VVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAW 346
Query: 2307 ALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILE 2486
+ R + S+AK FA D ++ A+Q+ GG G+ +Y V++ +RD++++QI E
Sbjct: 347 EVDSGRRNTY-YASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYE 405
Query: 2487 GSNEVMRMLISK 2522
G++++ R+++++
Sbjct: 406 GTSQIQRLIVAR 417
>ref|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform a
precursor [Homo sapiens].
Length = 421
Score = 237 bits (605), Expect = 3e-62
Identities = 126/372 (33%), Positives = 216/372 (58%), Gaps = 4/372 (1%)
Frame = +3
Query: 1419 EEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVGGSGLSR 1598
E+QKEFQ A FA +E++P AE+D+ +PV ++R+A LG ++ + GG GL
Sbjct: 43 EQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGT 102
Query: 1599 LDTSVIFEALATGCTSTTAYMSIHNMCVWIIDAFGNEEQRHRFCPPLCTMEKFASYCLTE 1778
D +I E LA GCT + +++ I GN++Q+ ++ + +YC+TE
Sbjct: 103 FDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTE 162
Query: 1779 PGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTG----GPGHKGISCV 1946
PG+GSD A + T AE++GD YI+NG K +I+ GG+A+ Y ++ R+ P +K +
Sbjct: 163 PGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGF 222
Query: 1947 VVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLNGGRI 2126
+VE TPG+ G+KE +G TR ++FED VP N + +G GF +A+ + R
Sbjct: 223 IVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRP 282
Query: 2127 NVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIRSAAV 2306
VA+ ++G A ++ + RK FG+ L +Q + F LA+MA K+ +R+ + AA
Sbjct: 283 VVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAW 342
Query: 2307 ALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILE 2486
+ R + S+AK FA D ++ A+Q+ GG G+ +Y V++ +RD++++QI E
Sbjct: 343 EVDSGRRNTY-YASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYE 401
Query: 2487 GSNEVMRMLISK 2522
G++++ R+++++
Sbjct: 402 GTSQIQRLIVAR 413
>ref|NP_001600.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
precursor [Homo sapiens].
Length = 432
Score = 222 bits (565), Expect = 2e-57
Identities = 131/378 (34%), Positives = 213/378 (56%), Gaps = 2/378 (0%)
Frame = +3
Query: 1401 PSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKELFPVDMMRKAARLGFGGVYVRTDVG 1580
P +E+ + FA +++ P ++ D+ +++ + G G+ V + G
Sbjct: 53 PLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYG 112
Query: 1581 GSGLSRLDTSVIFEALATGCTSTTAYMSIHNMCV-WIIDAFGNEEQRHRFCPPLCTMEKF 1757
G+G S L T ++ E LA S + I N + +I G EEQ+ + P L T EK
Sbjct: 113 GTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKV 171
Query: 1758 ASYCLTEPGSGSDAASLLTSAERQGDHYILNGSKAFISGGGEADIYVVMCRTGGP-GHKG 1934
S+CL+E G+GSD+ +L T A+++GD+Y+LNGSK +IS A +++VM G+KG
Sbjct: 172 GSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKG 231
Query: 1935 ISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGDEGQGFLIALRGLN 2114
I+ +V++ TPGL GK E K+G + T + FE+ VP AN +G G G+ A+ LN
Sbjct: 232 ITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLN 291
Query: 2115 GGRINVASCSLGAAHASIILTRDHLKVRKQFGEPLANNQYLQFKLADMATKLVASRLMIR 2294
GRI +A+ LG A T ++K R QFG+ L + Q LQ ++A +AT+L A+RL+
Sbjct: 292 EGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTY 351
Query: 2295 SAAVALQEEREDAVALCSMAKLFATDECFEICNQALQMHGGYGYLKDYAVQQYVRDSRVH 2474
+AA L E + + SMAK +A++ + ++ ++ GG GY KDY V++Y RD+++
Sbjct: 352 NAA-RLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIG 410
Query: 2475 QILEGSNEVMRMLISKSL 2528
I EG++ + I+K +
Sbjct: 411 TIYEGASNIQLNTIAKHI 428
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 108,226,836
Number of extensions: 3095785
Number of successful extensions: 13308
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 13207
Number of HSP's successfully gapped: 21
Length of query: 856
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 745
Effective length of database: 14,638,160
Effective search space: 10905429200
Effective search space used: 10905429200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007913
(2570 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1172 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1172 bits (591), Expect = 0.0
Identities = 591/591 (100%)
Strand = Plus / Minus
Query: 811 caagggctttccccatacgcaggggtgagtgagcggcacgaagcgaccgcctttccgcag 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366970 caagggctttccccatacgcaggggtgagtgagcggcacgaagcgaccgcctttccgcag 67366911
Query: 871 cagggtccggctcacctggcccagcggcacccgccagcctcttccgagctcgcgccatgg 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366910 cagggtccggctcacctggcccagcggcacccgccagcctcttccgagctcgcgccatgg 67366851
Query: 931 cgtcccgagggctcccgcgcagggcggggcgtttcctacgtctgcatcgccactgcgcag 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366850 cgtcccgagggctcccgcgcagggcggggcgtttcctacgtctgcatcgccactgcgcag 67366791
Query: 991 agcgcgccgctaagcgctcctggtcctcactctcttaatcaccgccctttacccgcgtga 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366790 agcgcgccgctaagcgctcctggtcctcactctcttaatcaccgccctttacccgcgtga 67366731
Query: 1051 ggctctagccctcacacctgcgactccagcccacctccccgctcgccgcgagcccggact 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366730 ggctctagccctcacacctgcgactccagcccacctccccgctcgccgcgagcccggact 67366671
Query: 1111 tccagtttagtcacttgatcgcggaggccccaggggtgtctgggagttgtagtcccggct 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366670 tccagtttagtcacttgatcgcggaggccccaggggtgtctgggagttgtagtcccggct 67366611
Query: 1171 tctcgctctgaggcgtgaggccgcacgcagggtcagacttgcacctcggctcccaccgtg 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366610 tctcgctctgaggcgtgaggccgcacgcagggtcagacttgcacctcggctcccaccgtg 67366551
Query: 1231 ctttgcggcccagctcttgattgtcagacttctggcggagccaagtggagcagggagcgg 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366550 ctttgcggcccagctcttgattgtcagacttctggcggagccaagtggagcagggagcgg 67366491
Query: 1291 ttatgctgcggggctgctgccatcgtgtctggacacgtctttgcgacctgcgccgcggtc 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366490 ttatgctgcggggctgctgccatcgtgtctggacacgtctttgcgacctgcgccgcggtc 67366431
Query: 1351 tctgggcccccgccaagaacggccggcgtagcgtggtctcctgcattgatc 1401
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67366430 tctgggcccccgccaagaacggccggcgtagcgtggtctcctgcattgatc 67366380
Score = 369 bits (186), Expect = 5e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 626 cttcacgtctacacctttctccagtcggctttctggctctgacttcatcagccagtatct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67368502 cttcacgtctacacctttctccagtcggctttctggctctgacttcatcagccagtatct 67368443
Query: 686 gttgagattcttcccacagtcttcagaggcttctgaagtctcctggaggccggagttctc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67368442 gttgagattcttcccacagtcttcagaggcttctgaagtctcctggaggccggagttctc 67368383
Query: 746 cactttagcagatgcctcacactcgttctttgttttagtccgttttccttctggcccctt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67368382 cactttagcagatgcctcacactcgttctttgttttagtccgttttccttctggcccctt 67368323
Query: 806 cttgtc 811
||||||
Sbjct: 67368322 cttgtc 67368317
Score = 369 bits (186), Expect = 5e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 626 cttcacgtctacacctttctccagtcggctttctggctctgacttcatcagccagtatct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67490026 cttcacgtctacacctttctccagtcggctttctggctctgacttcatcagccagtatct 67490085
Query: 686 gttgagattcttcccacagtcttcagaggcttctgaagtctcctggaggccggagttctc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67490086 gttgagattcttcccacagtcttcagaggcttctgaagtctcctggaggccggagttctc 67490145
Query: 746 cactttagcagatgcctcacactcgttctttgttttagtccgttttccttctggcccctt 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67490146 cactttagcagatgcctcacactcgttctttgttttagtccgttttccttctggcccctt 67490205
Query: 806 cttgtc 811
||||||
Sbjct: 67490206 cttgtc 67490211
Score = 359 bits (181), Expect = 5e-96
Identities = 197/201 (98%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 19 gatatattcatgttttattcaaagtactcaaaccccacctcggcatacaaccccgggtga 78
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 67371106 gatatattcatgttttattcaaagtactcaaaccccacctcagcatacaaccccgggtga 67371047
Query: 79 acatacaaagcacgctccccacgcctgcttgtcttgtggcagctggacatctctagagca 138
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67371046 acataacaagcacgctccccacgcctgcttgtcttgtggcagctggacatctctagagca 67370987
Query: 139 gcgtcttgcctattctagcagcagcatctcagttaacttggttcctttt-ctccaggctc 197
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 67370986 gcgtcttgcctattctagcagcagcatctcagttaacttggttccttttcctccaggctc 67370927
Query: 198 aaaataaagtcaaactcctct 218
|||||||||||||||||||||
Sbjct: 67370926 aaaataaagtcaaactcctct 67370906
Score = 359 bits (181), Expect = 5e-96
Identities = 197/201 (98%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 19 gatatattcatgttttattcaaagtactcaaaccccacctcggcatacaaccccgggtga 78
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 67487445 gatatattcatgttttattcaaagtactcaaaccccacctcagcatacaaccccgggtga 67487504
Query: 79 acatacaaagcacgctccccacgcctgcttgtcttgtggcagctggacatctctagagca 138
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67487505 acataacaagcacgctccccacgcctgcttgtcttgtggcagctggacatctctagagca 67487564
Query: 139 gcgtcttgcctattctagcagcagcatctcagttaacttggttcctttt-ctccaggctc 197
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 67487565 gcgtcttgcctattctagcagcagcatctcagttaacttggttccttttcctccaggctc 67487624
Query: 198 aaaataaagtcaaactcctct 218
|||||||||||||||||||||
Sbjct: 67487625 aaaataaagtcaaactcctct 67487645
Score = 307 bits (155), Expect = 2e-80
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 2230 agtacctgcagttcaaactggctgatatggcgaccaagctggtagcctcaaggctgatga 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67350305 agtacctgcagttcaaactggctgatatggcgaccaagctggtagcctcaaggctgatga 67350246
Query: 2290 tccgcagtgcggccgtggctctgcaggaggagcgggaggatgcagtggccctgtgctcca 2349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67350245 tccgcagtgcggccgtggctctgcaggaggagcgggaggatgcagtggccctgtgctcca 67350186
Query: 2350 tggccaagctctttgctacggatgaatgctttgag 2384
|||||||||||||||||||||||||||||||||||
Sbjct: 67350185 tggccaagctctttgctacggatgaatgctttgag 67350151
Score = 307 bits (155), Expect = 2e-80
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 2230 agtacctgcagttcaaactggctgatatggcgaccaagctggtagcctcaaggctgatga 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67434552 agtacctgcagttcaaactggctgatatggcgaccaagctggtagcctcaaggctgatga 67434611
Query: 2290 tccgcagtgcggccgtggctctgcaggaggagcgggaggatgcagtggccctgtgctcca 2349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67434612 tccgcagtgcggccgtggctctgcaggaggagcgggaggatgcagtggccctgtgctcca 67434671
Query: 2350 tggccaagctctttgctacggatgaatgctttgag 2384
|||||||||||||||||||||||||||||||||||
Sbjct: 67434672 tggccaagctctttgctacggatgaatgctttgag 67434706
Score = 301 bits (152), Expect = 1e-78
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 217 ctcgggtcaggggttggacagagagtctctggcgagtgaagagaaccatgttttttaagg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370629 ctcgggtcaggggttggacagagagtctctggcgagtgaagagaaccatgttttttaagg 67370570
Query: 277 gaccaccagtggctctatgagcttggtgatgggttttgagctcagccaggggaatgaaac 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370569 gaccaccagtggctctatgagcttggtgatgggttttgagctcagccaggggaatgaaac 67370510
Query: 337 gcttcatcatccgaacaaactgtacgtccacc 368
||||||||||||||||||||||||||||||||
Sbjct: 67370509 gcttcatcatccgaacaaactgtacgtccacc 67370478
Score = 301 bits (152), Expect = 1e-78
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 217 ctcgggtcaggggttggacagagagtctctggcgagtgaagagaaccatgttttttaagg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67487922 ctcgggtcaggggttggacagagagtctctggcgagtgaagagaaccatgttttttaagg 67487981
Query: 277 gaccaccagtggctctatgagcttggtgatgggttttgagctcagccaggggaatgaaac 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67487982 gaccaccagtggctctatgagcttggtgatgggttttgagctcagccaggggaatgaaac 67488041
Query: 337 gcttcatcatccgaacaaactgtacgtccacc 368
||||||||||||||||||||||||||||||||
Sbjct: 67488042 gcttcatcatccgaacaaactgtacgtccacc 67488073
Score = 299 bits (151), Expect = 4e-78
Identities = 165/172 (95%)
Strand = Plus / Minus
Query: 1501 aggagctgttcccagtggatatgatgcggaaggcggccagactgggctttnnnnnnnttt 1560
|||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 67363930 aggagctgttcccagtggatatgatgcggaaggcggccagactgggctttgggggggttt 67363871
Query: 1561 atgtgcgaacggatgtaggagggtctggattgtcacggctcgatacatctgtgatctttg 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67363870 atgtgcgaacggatgtaggagggtctggattgtcacggctcgatacatctgtgatctttg 67363811
Query: 1621 aagccttggccacaggctgcaccagcaccacagcctatatgagcatccacaa 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67363810 aagccttggccacaggctgcaccagcaccacagcctatatgagcatccacaa 67363759
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 1858 aggccttcatcagtggcggcggcgaagcagacatctatgtagtcatgtgccgaactggag 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67362301 aggccttcatcagtggcggcggcgaagcagacatctatgtagtcatgtgccgaactggag 67362242
Query: 1918 gacctggccataaaggcatctcatgtgtagttgttgaaaaggggactcctggcctcagct 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67362241 gacctggccataaaggcatctcatgtgtagttgttgaaaaggggactcctggcctcagct 67362182
Query: 1978 ttggaaagaaggagaaaaaggtg 2000
|||||||||||||||||||||||
Sbjct: 67362181 ttggaaagaaggagaaaaaggtg 67362159
Score = 283 bits (143), Expect = 2e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 1858 aggccttcatcagtggcggcggcgaagcagacatctatgtagtcatgtgccgaactggag 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67496376 aggccttcatcagtggcggcggcgaagcagacatctatgtagtcatgtgccgaactggag 67496317
Query: 1918 gacctggccataaaggcatctcatgtgtagttgttgaaaaggggactcctggcctcagct 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67496316 gacctggccataaaggcatctcatgtgtagttgttgaaaaggggactcctggcctcagct 67496257
Query: 1978 ttggaaagaaggagaaaaaggtg 2000
|||||||||||||||||||||||
Sbjct: 67496256 ttggaaagaaggagaaaaaggtg 67496234
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 1996 aggtggggtggaactcacagccaaccagagcggtgatctttgaagactgtgctgtccccg 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67492464 aggtggggtggaactcacagccaaccagagcggtgatctttgaagactgtgctgtccccg 67492405
Query: 2056 tggccaacagaatcggggacgagggccagggatttctcattgccctgagaggactgaacg 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67492404 tggccaacagaatcggggacgagggccagggatttctcattgccctgagaggactgaacg 67492345
Query: 2116 gagggaggatcaatgtcg 2133
||||||||||||||||||
Sbjct: 67492344 gagggaggatcaatgtcg 67492327
Score = 220 bits (111), Expect = 3e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1673 catgtgtgtctggataatcgatgcctttggaaacgaggagcagaggcacaggttttgccc 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67363172 catgtgtgtctggataatcgatgcctttggaaacgaggagcagaggcacaggttttgccc 67363113
Query: 1733 accactctgtaccatggagaagtttgcttcctactgtcttactgaaccagg 1783
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67363112 accactctgtaccatggagaagtttgcttcctactgtcttactgaaccagg 67363062
Score = 210 bits (106), Expect = 3e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 2383 agatctgcaatcaggctctgcagatgcacgggggctatggctacctaaaggactacgcag 2442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67435236 agatctgcaatcaggctctgcagatgcacgggggctatggctacctaaaggactacgcag 67435295
Query: 2443 tccagcagtatgtacgggactccagggtccaccagatccttgaagg 2488
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67435296 tccagcagtatgtacgggactccagggtccaccagatccttgaagg 67435341
Score = 202 bits (102), Expect = 7e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 1402 catccacgggactaaatgaagagcagaaagaatttcagagagtggccttcagctttgctg 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67364452 catccacgggactaaatgaagagcagaaagaatttcagagagtggccttcagctttgctg 67364393
Query: 1462 cccaggagatgatgccaaacatggcagagtgggaccagaagg 1503
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67364392 cccaggagatgatgccaaacatggcagagtgggaccagaagg 67364351
Score = 198 bits (100), Expect = 1e-47
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 366 accatggaccatttcgggttgtcttctttgctggatggatcataatggggactgttcttc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370255 accatggaccatttcgggttgtcttctttgctggatggatcataatggggactgttcttc 67370196
Query: 426 tcaaactgtgtgtggtctgggtaagcctccttcacaatct 465
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67370195 tcaaactgtgtgtggtctgggtaagcctccttcacaatct 67370156
Score = 198 bits (100), Expect = 1e-47
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 366 accatggaccatttcgggttgtcttctttgctggatggatcataatggggactgttcttc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67488296 accatggaccatttcgggttgtcttctttgctggatggatcataatggggactgttcttc 67488355
Query: 426 tcaaactgtgtgtggtctgggtaagcctccttcacaatct 465
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67488356 tcaaactgtgtgtggtctgggtaagcctccttcacaatct 67488395
Score = 196 bits (99), Expect = 4e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 2133 gcgtcctgctccctgggtgctgcccatgcttcaatcatcctcactcgagaccacctcaag 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67492244 gcgtcctgctccctgggtgctgcccatgcttcaatcatcctcactcgagaccacctcaag 67492185
Query: 2193 gtccggaagcagtttggagagcccctggccaataaccag 2231
|||||||||||||||||||||||||||||||||||||||
Sbjct: 67492184 gtccggaagcagtttggagagcccctggccaataaccag 67492146
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 464 cttcataagccctgcgatgcctggctttctgcagttgctatggtagaagaaggcgtcttc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67369629 cttcataagccctgcgatgcctggctttctgcagttgctatggtagaagaaggcgtcttc 67369570
Query: 524 ctccagcttcatggctctgaggaagttccgggcct 558
|||||||||||||||||||||||||||||||||||
Sbjct: 67369569 ctccagcttcatggctctgaggaagttccgggcct 67369535
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 464 cttcataagccctgcgatgcctggctttctgcagttgctatggtagaagaaggcgtcttc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67488922 cttcataagccctgcgatgcctggctttctgcagttgctatggtagaagaaggcgtcttc 67488981
Query: 524 ctccagcttcatggctctgaggaagttccgggcct 558
|||||||||||||||||||||||||||||||||||
Sbjct: 67488982 ctccagcttcatggctctgaggaagttccgggcct 67489016
Score = 159 bits (80), Expect = 9e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1781 agggagtgggagtgatgctgcctccctcttgacctctgctgagcggcaaggagatcacta 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67362685 agggagtgggagtgatgctgcctccctcttgacctctgctgagcggcaaggagatcacta 67362626
Query: 1841 catcctcaatggctccaagg 1860
||||||||||||||||||||
Sbjct: 67362625 catcctcaatggctccaagg 67362606
Score = 159 bits (80), Expect = 9e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1781 agggagtgggagtgatgctgcctccctcttgacctctgctgagcggcaaggagatcacta 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67496760 agggagtgggagtgatgctgcctccctcttgacctctgctgagcggcaaggagatcacta 67496701
Query: 1841 catcctcaatggctccaagg 1860
||||||||||||||||||||
Sbjct: 67496700 catcctcaatggctccaagg 67496681
Score = 153 bits (77), Expect = 6e-34
Identities = 83/85 (97%)
Strand = Plus / Minus
Query: 2486 aggcagcaacgaggtgatgcggatgctgatctcaaaaagcctgcttcaggaatagtgccc 2545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67348946 aggcagcaacgaggtgatgcggatgctgatctcaaaaagcctgcttcaggaatagtgccc 67348887
Query: 2546 cacctgaggccctcgtgggtcaggg 2570
|||||||||||||||||||||||
Sbjct: 67348886 accctgaggccctcgtgggtcaggg 67348862
Score = 153 bits (77), Expect = 6e-34
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 2486 aggcagcaacgaggtgatgcggatgctgatctcaaaaagcctgcttcaggaatagtgccc 2545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67437905 aggcagcaacgaggtgatgcggatgctgatctcaaaaagcctgcttcaggaatagtgccc 67437964
Query: 2546 cacctgaggccctcgtgggtcaggg 2570
|||||||||||||||||||||||
Sbjct: 67437965 accctgaggccctcgtgggtcaggg 67437989
Score = 143 bits (72), Expect = 6e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 556 cctggtagttgcggacaccatcccagcatgttgtctgcttgggctgtgctttgagatcct 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67489349 cctggtagttgcggacaccatcccagcatgttgtctgcttgggctgtgctttgagatcct 67489408
Query: 616 caatgctgaact 627
||||||||||||
Sbjct: 67489409 caatgctgaact 67489420
Score = 81.8 bits (41), Expect = 2e-12
Identities = 48/49 (97%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 569 gacaccatcccagcatgttgtctgcttgggctgtgctttgagatcctca 617
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 67369190 gacaccatcccagcatgttgtctgctt-ggctgtgctttgagatcctca 67369143
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 68,462,593
Number of extensions: 398
Number of successful extensions: 398
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 27
Length of query: 2570
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2548
Effective length of database: 2,808,408,574
Effective search space: 7155825046552
Effective search space used: 7155825046552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)