Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007916
(1043 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068968.1| testican-1 [Bos taurus]. 509 e-144
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 240 2e-63
>ref|NP_001068968.1| testican-1 [Bos taurus].
Length = 442
Score = 509 bits (1312), Expect = e-144
Identities = 240/295 (81%), Positives = 246/295 (83%), Gaps = 3/295 (1%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WC LQVESRHLD FLDNDQWLSTVS+Y+RDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCLLQVESRHLDALAGGAGPNNGNFLDNDQWLSTVSEYERDKYWNRF 60
Query: 347 RD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 517
RD DDYFRNWNPNKPFDQALDP+KDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ
Sbjct: 61 RDEVEDDYFRNWNPNKPFDQALDPAKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 120
Query: 518 KKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCD 697
KKG V HKHWVGPSNLVKCKPCPA QSAMVCGSDGHTYTSKCKLEFHACSTG+SLTTLCD
Sbjct: 121 KKGTVVHKHWVGPSNLVKCKPCPAAQSAMVCGSDGHTYTSKCKLEFHACSTGRSLTTLCD 180
Query: 698 GXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRF 877
G NACTDKELRNLASRLKDWFGALHEDANRVI PTSS+ AQGRF
Sbjct: 181 GPCPCLPEPEPPKHKAEKNACTDKELRNLASRLKDWFGALHEDANRVINPTSSETAQGRF 240
Query: 878 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 241 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 295
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 240 bits (612), Expect = 2e-63
Identities = 122/260 (46%), Positives = 162/260 (62%), Gaps = 5/260 (1%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYD-RDKYWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
F++++QWLS++SQY + K+WNRFRD DDY ++W N+ D+ALD +KDPC KVKCS
Sbjct: 38 FMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKCSR 97
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGH 625
HKVC+ Q YQ A+C+SRK L R K+ V G + + CKPC A VCGSDGH
Sbjct: 98 HKVCIAQGYQRAMCISRKKLEHRIKQPAVKLH---GNKDTI-CKPCHMAHLASVCGSDGH 153
Query: 626 TYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXX-NACTDKELRNLASRLKD 802
TY+S CKLE AC + K LT C+G CT ++L +L RL+D
Sbjct: 154 TYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQDLADLGDRLRD 213
Query: 803 WFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 982
WF LHE++ + S + D S+ CKDS+GWMF+KLD + DL LD +E+ AI
Sbjct: 214 WFQLLHENSKQNGSANSGASPASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAI 273
Query: 983 YLDKYEPCIKPLFNSCDSFR 1042
LDKYE CI+P FNSCD+++
Sbjct: 274 NLDKYEVCIRPFFNSCDTYK 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,519,227
Number of extensions: 960831
Number of successful extensions: 5138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5066
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007916
(1043 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPO... 407 e-114
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 235 5e-62
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 230 2e-60
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 187 1e-47
>ref|XP_531914.2| PREDICTED: similar to Testican-1 precursor (SPOCK protein) [Canis
familiaris].
Length = 418
Score = 407 bits (1047), Expect = e-114
Identities = 192/215 (89%), Positives = 194/215 (90%)
Frame = +2
Query: 398 ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCK 577
ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVA+KHWVGPSNLVKCK
Sbjct: 57 ALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAYKHWVGPSNLVKCK 116
Query: 578 PCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNA 757
PCPA QSAMVCGSDGHTYTSKCKLEFHACSTGKSL LCDG NA
Sbjct: 117 PCPAAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNILCDGPCPCLPEPEPSKHKTEKNA 176
Query: 758 CTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKLD 937
CTDKELRNLASRLKDWFGALHEDANRVIKPTSSD AQGRFDTSILPICKDSLGWMFNKLD
Sbjct: 177 CTDKELRNLASRLKDWFGALHEDANRVIKPTSSDGAQGRFDTSILPICKDSLGWMFNKLD 236
Query: 938 MNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
MNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 237 MNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 271
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 1 [Canis
familiaris].
Length = 421
Score = 235 bits (600), Expect = 5e-62
Identities = 120/257 (46%), Positives = 158/257 (61%), Gaps = 2/257 (0%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYD-RDKYWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKV 454
F+++ QWLS++SQY + K+ RFRDDDY ++W N+ D+ALD +KDPC KVKCS HKV
Sbjct: 38 FMEDKQWLSSISQYSGKIKHGTRFRDDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKV 97
Query: 455 CVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYT 634
C+ Q YQ A+C+SRK L R K+ + G + + CKPC A VCGSDGHTY+
Sbjct: 98 CIAQGYQRAMCISRKKLEHRIKQPTLKLP---GNKDTI-CKPCHMAPLASVCGSDGHTYS 153
Query: 635 SKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXX-NACTDKELRNLASRLKDWFG 811
S CKLE AC + K LT C+G CT ++L +L RL+DWF
Sbjct: 154 SVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLRDWFQ 213
Query: 812 ALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLD 991
LHE+A + S D S+ CKDS+GWMF+KLD + DL LD +E+ AI LD
Sbjct: 214 LLHENAKQNGSAGSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAINLD 273
Query: 992 KYEPCIKPLFNSCDSFR 1042
KYE CI+P FNSCD+++
Sbjct: 274 KYEVCIRPFFNSCDTYK 290
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 2) isoform 2 [Canis
familiaris].
Length = 424
Score = 230 bits (586), Expect = 2e-60
Identities = 120/260 (46%), Positives = 158/260 (60%), Gaps = 5/260 (1%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYD-RDKYWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
F+++ QWLS++SQY + K+ RFRD DDY ++W N+ D+ALD +KDPC KVKCS
Sbjct: 38 FMEDKQWLSSISQYSGKIKHGTRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKCSR 97
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGH 625
HKVC+ Q YQ A+C+SRK L R K+ + G + + CKPC A VCGSDGH
Sbjct: 98 HKVCIAQGYQRAMCISRKKLEHRIKQPTLKLP---GNKDTI-CKPCHMAPLASVCGSDGH 153
Query: 626 TYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXX-NACTDKELRNLASRLKD 802
TY+S CKLE AC + K LT C+G CT ++L +L RL+D
Sbjct: 154 TYSSVCKLEQQACLSSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQDLADLGDRLRD 213
Query: 803 WFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 982
WF LHE+A + S D S+ CKDS+GWMF+KLD + DL LD +E+ AI
Sbjct: 214 WFQLLHENAKQNGSAGSGANLASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAI 273
Query: 983 YLDKYEPCIKPLFNSCDSFR 1042
LDKYE CI+P FNSCD+++
Sbjct: 274 NLDKYEVCIRPFFNSCDTYK 293
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin, CWCV,
and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 187 bits (475), Expect = 1e-47
Identities = 91/176 (51%), Positives = 112/176 (63%), Gaps = 1/176 (0%)
Frame = +2
Query: 518 KKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCD 697
K V HK W GP + CK CP + VCGSDGHTY+S+CKLE+ AC GK L+ C+
Sbjct: 129 KDAGVGHKQWRGPVSST-CKQCPVAYTNPVCGSDGHTYSSQCKLEYQACVLGKQLSVNCE 187
Query: 698 GXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSS-DAAQGR 874
G AC+D E R +A+RL+DWF ALHE ++ K + + R
Sbjct: 188 GRCPCPPDKPTGPSRRVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSR 247
Query: 875 FDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
FDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYLDK E C K FNSCD+++
Sbjct: 248 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTKAFFNSCDTYK 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,039,830
Number of extensions: 984481
Number of successful extensions: 5172
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5130
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007916
(1043 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa]. 338 2e-93
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 282 2e-76
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 282 2e-76
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 276 1e-74
Alignment gi|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scr... 210 1e-54
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 210 1e-54
Alignment gi|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa]. 203 1e-52
>ref|XP_003354339.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 271
Score = 338 bits (868), Expect = 2e-93
Identities = 155/178 (87%), Positives = 155/178 (87%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WCFLQVESRHLD FLDNDQWLSTVSQYDRDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCFLQVESRHLDALAGGAGPNNGNFLDNDQWLSTVSQYDRDKYWNRF 60
Query: 347 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 526
RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG
Sbjct: 61 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 120
Query: 527 NVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDG 700
NVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDG
Sbjct: 121 NVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDG 178
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 282 bits (721), Expect = 2e-76
Identities = 133/257 (51%), Positives = 167/257 (64%), Gaps = 2/257 (0%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKV 454
FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+V
Sbjct: 32 FLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEV 91
Query: 455 CVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYT 634
C+ Q TA+C+ ++ L K HK GP C+ C + + VCGSDGH Y+
Sbjct: 92 CIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPST-CRQCLGVSMSPVCGSDGHAYS 150
Query: 635 SKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGA 814
S+CKLE+ AC GK ++ C+G CT E R +++RL+DWF A
Sbjct: 151 SQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKA 210
Query: 815 LHEDANRVIKPTSS-DAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLD 991
LHE ++ K S + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYLD
Sbjct: 211 LHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLD 270
Query: 992 KYEPCIKPLFNSCDSFR 1042
K E C + FNSCD++R
Sbjct: 271 KNEQCTEAFFNSCDTYR 287
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 282 bits (721), Expect = 2e-76
Identities = 133/257 (51%), Positives = 167/257 (64%), Gaps = 2/257 (0%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKV 454
FLD+ QWLSTVSQYDR+ WNRFRDDDYFR W+P + FDQALDP+KDPCL +KC H+V
Sbjct: 32 FLDDKQWLSTVSQYDREAGQWNRFRDDDYFRTWSPGRAFDQALDPAKDPCLNMKCGRHEV 91
Query: 455 CVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYT 634
C+ Q TA+C+ ++ L K HK GP C+ C + + VCGSDGH Y+
Sbjct: 92 CIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPST-CRQCLGVSMSPVCGSDGHAYS 150
Query: 635 SKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGA 814
S+CKLE+ AC GK ++ C+G CT E R +++RL+DWF A
Sbjct: 151 SQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDWFKA 210
Query: 815 LHEDANRVIKPTSS-DAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLD 991
LHE ++ K S + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYLD
Sbjct: 211 LHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSIYLD 270
Query: 992 KYEPCIKPLFNSCDSFR 1042
K E C + FNSCD++R
Sbjct: 271 KNEQCTEAFFNSCDTYR 287
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 276 bits (707), Expect = 1e-74
Identities = 133/260 (51%), Positives = 167/260 (64%), Gaps = 5/260 (1%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
FLD+ QWLSTVSQYDR+ WNRFRD DDYFR W+P + FDQALDP+KDPCL +KC
Sbjct: 32 FLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGRAFDQALDPAKDPCLNMKCGR 91
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGH 625
H+VC+ Q TA+C+ ++ L K HK GP C+ C + + VCGSDGH
Sbjct: 92 HEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPST-CRQCLGVSMSPVCGSDGH 150
Query: 626 TYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDW 805
Y+S+CKLE+ AC GK ++ C+G CT E R +++RL+DW
Sbjct: 151 AYSSQCKLEYQACVLGKQISVRCEGHCPCPSDTTRSSRGNVKRVCTSLEFREVSTRLRDW 210
Query: 806 FGALHEDANRVIKPTSS-DAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 982
F ALHE ++ K S + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +I
Sbjct: 211 FKALHESGSQNKKAKGSLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGSI 270
Query: 983 YLDKYEPCIKPLFNSCDSFR 1042
YLDK E C + FNSCD++R
Sbjct: 271 YLDKNEQCTEAFFNSCDTYR 290
>ref|XP_003360811.1| PREDICTED: testican-2-like, partial [Sus scrofa].
Length = 351
Score = 210 bits (534), Expect = 1e-54
Identities = 106/231 (45%), Positives = 138/231 (59%), Gaps = 1/231 (0%)
Frame = +2
Query: 350 DDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGN 529
+DDY ++W N+ D+ALD +KDPC KVKCS HKVC+ Q YQ A+C+SRK L R K+
Sbjct: 3 EDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPA 62
Query: 530 VAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDGXXX 709
+ + + CKPC Q A VCGSDGHTY+S CKLE AC + K LT C+G
Sbjct: 63 LK----LHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCP 118
Query: 710 XXXXXXXXXXXXXX-NACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTS 886
CT ++L +L RL+DWF LHE++ + +S D S
Sbjct: 119 CPTEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGANLASGLDKS 178
Query: 887 ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF 1039
+ CKDS+GWMF+KLD + DL LD E+ AI LDKYE CI+P FNSCD++
Sbjct: 179 LGASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTY 229
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 210 bits (534), Expect = 1e-54
Identities = 106/231 (45%), Positives = 138/231 (59%), Gaps = 1/231 (0%)
Frame = +2
Query: 353 DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNV 532
DDY ++W N+ D+ALD +KDPC KVKCS HKVC+ Q YQ A+C+SRK L R K+ +
Sbjct: 56 DDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAL 115
Query: 533 AHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDGXXXX 712
+ + CKPC Q A VCGSDGHTY+S CKLE AC + K LT C+G
Sbjct: 116 K----LHGNKDTACKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLTVRCEGPCPC 171
Query: 713 XXXXXXXXXXXXX-NACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTSI 889
CT ++L +L RL+DWF LHE++ + +S D S+
Sbjct: 172 PTEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSVSSGANLASGLDKSL 231
Query: 890 LPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
CKDS+GWMF+KLD + DL LD E+ AI LDKYE CI+P FNSCD+++
Sbjct: 232 GASCKDSIGWMFSKLDTSADLFLDQMELAAINLDKYEVCIRPFFNSCDTYK 282
>ref|XP_003354335.1| PREDICTED: testican-1-like [Sus scrofa].
Length = 258
Score = 203 bits (516), Expect = 1e-52
Identities = 95/96 (98%), Positives = 96/96 (100%)
Frame = +2
Query: 755 ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKL 934
ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKL
Sbjct: 16 ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKL 75
Query: 935 DMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
DMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 76 DMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 111
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,920,694
Number of extensions: 619147
Number of successful extensions: 3302
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3245
Number of HSP's successfully gapped: 7
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007916
(1043 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus]. 520 e-148
Alignment gi|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus]. 520 e-148
Alignment gi|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus]. 514 e-146
Alignment gi|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus]. 514 e-146
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 508 e-144
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 304 7e-83
Alignment gi|NP_443720.1| testican-2 precursor [Mus musculus]. 236 2e-62
>ref|NP_001159937.1| testican-1 isoform 5 precursor [Mus musculus].
Length = 364
Score = 520 bits (1339), Expect = e-148
Identities = 243/292 (83%), Positives = 248/292 (84%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WCFLQV+SRHLD FLDNDQWLSTVSQYDRDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRF 60
Query: 347 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 526
RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG
Sbjct: 61 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 120
Query: 527 NVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDGXX 706
NVAHKHW+GPSNLVKCKPCP QSAMVCGSDGHTYTSKCKLEFHACSTGKSL +LCDG
Sbjct: 121 NVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCDGPC 180
Query: 707 XXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTS 886
+ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSD AQGRFDTS
Sbjct: 181 PCLPEPEPLKPKAEKSACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDPAQGRFDTS 240
Query: 887 ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 241 ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 292
>ref|NP_001159935.1| testican-1 isoform 3 precursor [Mus musculus].
Length = 439
Score = 520 bits (1339), Expect = e-148
Identities = 243/292 (83%), Positives = 248/292 (84%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WCFLQV+SRHLD FLDNDQWLSTVSQYDRDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRF 60
Query: 347 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 526
RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG
Sbjct: 61 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 120
Query: 527 NVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDGXX 706
NVAHKHW+GPSNLVKCKPCP QSAMVCGSDGHTYTSKCKLEFHACSTGKSL +LCDG
Sbjct: 121 NVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCDGPC 180
Query: 707 XXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTS 886
+ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSD AQGRFDTS
Sbjct: 181 PCLPEPEPLKPKAEKSACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDPAQGRFDTS 240
Query: 887 ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 241 ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 292
>ref|NP_001159936.1| testican-1 isoform 4 precursor [Mus musculus].
Length = 367
Score = 514 bits (1325), Expect = e-146
Identities = 243/295 (82%), Positives = 248/295 (84%), Gaps = 3/295 (1%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WCFLQV+SRHLD FLDNDQWLSTVSQYDRDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRF 60
Query: 347 RD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 517
RD DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ
Sbjct: 61 RDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 120
Query: 518 KKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCD 697
KKGNVAHKHW+GPSNLVKCKPCP QSAMVCGSDGHTYTSKCKLEFHACSTGKSL +LCD
Sbjct: 121 KKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCD 180
Query: 698 GXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRF 877
G +ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSD AQGRF
Sbjct: 181 GPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDPAQGRF 240
Query: 878 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 241 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 295
>ref|NP_033288.2| testican-1 isoform 1 precursor [Mus musculus].
Length = 442
Score = 514 bits (1325), Expect = e-146
Identities = 243/295 (82%), Positives = 248/295 (84%), Gaps = 3/295 (1%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WCFLQV+SRHLD FLDNDQWLSTVSQYDRDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRF 60
Query: 347 RD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 517
RD DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ
Sbjct: 61 RDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 120
Query: 518 KKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCD 697
KKGNVAHKHW+GPSNLVKCKPCP QSAMVCGSDGHTYTSKCKLEFHACSTGKSL +LCD
Sbjct: 121 KKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCD 180
Query: 698 GXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRF 877
G +ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSD AQGRF
Sbjct: 181 GPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDPAQGRF 240
Query: 878 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 241 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 295
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 508 bits (1308), Expect = e-144
Identities = 242/295 (82%), Positives = 247/295 (83%), Gaps = 3/295 (1%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WCFLQV+SRHLD FLDNDQWLSTVSQYDRDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRF 60
Query: 347 RD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 517
RD DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ
Sbjct: 61 RDEVEDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQ 120
Query: 518 KKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCD 697
KKGNVAHKHW+GPSNLVKCKPCP QSAMVCGSDGHTYTSKCKLEFHACSTGKSL +LCD
Sbjct: 121 KKGNVAHKHWLGPSNLVKCKPCPVAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCD 180
Query: 698 GXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRF 877
G +ACTDKELRNLASRLKDWFGALHEDANRVIKPTSSD AQG F
Sbjct: 181 GPCPCLPEPEPLKPKAEKSACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDPAQG-F 239
Query: 878 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 240 DTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFK 294
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 304 bits (779), Expect = 7e-83
Identities = 146/261 (55%), Positives = 181/261 (69%), Gaps = 6/261 (2%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
FLD QWL+T+SQYD++ WN+FRD DDYFR WNP KPFDQALDP+KDPCLK KCS
Sbjct: 38 FLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWNPGKPFDQALDPAKDPCLKTKCSR 97
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVG-PSNLVKCKPCPAIQSAMVCGSDG 622
HKVC+TQD QTALC+S + L K+ +HK W G PS+ CKPCP ++ VCGSDG
Sbjct: 98 HKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSS--TCKPCPIAYASPVCGSDG 155
Query: 623 HTYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKD 802
H+Y+S+CKLE+ AC GK ++ C+G AC+D E R +A+RL+D
Sbjct: 156 HSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNIGRNVKRACSDLEFREVANRLRD 215
Query: 803 WFGALHEDANRVIKPTS-SDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINA 979
WF ALHE ++ K + + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +
Sbjct: 216 WFKALHESGSQNKKTKALLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELGS 275
Query: 980 IYLDKYEPCIKPLFNSCDSFR 1042
IYLDK E C K FNSCD+++
Sbjct: 276 IYLDKNEQCTKAFFNSCDTYK 296
>ref|NP_443720.1| testican-2 precursor [Mus musculus].
Length = 423
Score = 236 bits (602), Expect = 2e-62
Identities = 123/260 (47%), Positives = 165/260 (63%), Gaps = 5/260 (1%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYD-RDKYWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
F++++QWLS++SQY + K+WNRFRD DDY ++W N+ D+ALD +KDPC KVKCS
Sbjct: 38 FMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKCSR 97
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGH 625
HKVCV Q YQ A+C+SRK L R K+ ++ K G ++ CKPC Q A VCGSDGH
Sbjct: 98 HKVCVAQGYQRAMCISRKKLEHRIKQPSL--KLHGGKDSV--CKPCHMAQLASVCGSDGH 153
Query: 626 TYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXN-ACTDKELRNLASRLKD 802
TY+S CKLE AC + K L C+G + CT ++L +L RL+D
Sbjct: 154 TYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDRLRD 213
Query: 803 WFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 982
WF L E++ + S+ G D S+ CKDS+GWMF+KLD + DL LD +E+ AI
Sbjct: 214 WFQLLRENSKQNGSANSATNPAG-LDKSLGASCKDSIGWMFSKLDTSGDLFLDQTELAAI 272
Query: 983 YLDKYEPCIKPLFNSCDSFR 1042
LDKYE CI+P FNSCD+++
Sbjct: 273 NLDKYEVCIRPFFNSCDTYK 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,715,434
Number of extensions: 811716
Number of successful extensions: 4074
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3999
Number of HSP's successfully gapped: 7
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007916
(1043 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004589.1| testican-1 precursor [Homo sapiens]. 514 e-146
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 311 6e-85
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 311 6e-85
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 306 3e-83
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 306 3e-83
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 276 3e-74
Alignment gi|NP_001191285.1| testican-3 isoform 7 [Homo sapiens]. 268 5e-72
Alignment gi|NP_055582.1| testican-2 isoform 2 [Homo sapiens]. 239 2e-63
Alignment gi|NP_001191283.1| testican-3 isoform 5 [Homo sapiens]. 223 2e-58
Alignment gi|NP_001191284.1| testican-3 isoform 6 [Homo sapiens]. 187 1e-47
>ref|NP_004589.1| testican-1 precursor [Homo sapiens].
Length = 439
Score = 514 bits (1323), Expect = e-146
Identities = 242/292 (82%), Positives = 246/292 (84%)
Frame = +2
Query: 167 MPXXXXXXXXXXXWCFLQVESRHLDXXXXXXXXXXXXFLDNDQWLSTVSQYDRDKYWNRF 346
MP WCFLQVESRHLD FLDNDQWLSTVSQYDRDKYWNRF
Sbjct: 1 MPAIAVLAAAAAAWCFLQVESRHLDALAGGAGPNHGNFLDNDQWLSTVSQYDRDKYWNRF 60
Query: 347 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 526
RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG
Sbjct: 61 RDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKG 120
Query: 527 NVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDGXX 706
NVA KHWVGPSNLVKCKPCP QSAMVCGSDGH+YTSKCKLEFHACSTGKSL TLCDG
Sbjct: 121 NVAQKHWVGPSNLVKCKPCPVAQSAMVCGSDGHSYTSKCKLEFHACSTGKSLATLCDGPC 180
Query: 707 XXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKPTSSDAAQGRFDTS 886
+ACTDKELRNLASRLKDWFGALHEDANRVIKPTSS+ AQGRFDTS
Sbjct: 181 PCLPEPEPPKHKAERSACTDKELRNLASRLKDWFGALHEDANRVIKPTSSNTAQGRFDTS 240
Query: 887 ILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
ILPICKDSLGWMFNKLDMNYDLLLD SEINAIYLDKYEPCIKPLFNSCDSF+
Sbjct: 241 ILPICKDSLGWMFNKLDMNYDLLLDPSEINAIYLDKYEPCIKPLFNSCDSFK 292
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 311 bits (797), Expect = 6e-85
Identities = 144/257 (56%), Positives = 180/257 (70%), Gaps = 2/257 (0%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKV 454
FLD+ QWL+T+SQYD++ WN+FRDDDYFR W+P KPFDQALDP+KDPCLK+KCS HKV
Sbjct: 38 FLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKV 97
Query: 455 CVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYT 634
C+ QD QTA+C+S + L R K+ V H+ W GP L CK CP + + VCGSDGHTY+
Sbjct: 98 CIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPI-LSTCKQCPVVYPSPVCGSDGHTYS 156
Query: 635 SKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGA 814
+CKLE+ AC GK ++ C+G AC+D E R +A+RL+DWF A
Sbjct: 157 FQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKA 216
Query: 815 LHEDANRVIK-PTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLD 991
LHE ++ K T + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYLD
Sbjct: 217 LHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLD 276
Query: 992 KYEPCIKPLFNSCDSFR 1042
K E C K FNSCD+++
Sbjct: 277 KNEQCTKAFFNSCDTYK 293
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 311 bits (797), Expect = 6e-85
Identities = 144/257 (56%), Positives = 180/257 (70%), Gaps = 2/257 (0%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKV 454
FLD+ QWL+T+SQYD++ WN+FRDDDYFR W+P KPFDQALDP+KDPCLK+KCS HKV
Sbjct: 38 FLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKV 97
Query: 455 CVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYT 634
C+ QD QTA+C+S + L R K+ V H+ W GP L CK CP + + VCGSDGHTY+
Sbjct: 98 CIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPI-LSTCKQCPVVYPSPVCGSDGHTYS 156
Query: 635 SKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGA 814
+CKLE+ AC GK ++ C+G AC+D E R +A+RL+DWF A
Sbjct: 157 FQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKA 216
Query: 815 LHEDANRVIK-PTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLD 991
LHE ++ K T + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYLD
Sbjct: 217 LHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLD 276
Query: 992 KYEPCIKPLFNSCDSFR 1042
K E C K FNSCD+++
Sbjct: 277 KNEQCTKAFFNSCDTYK 293
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 306 bits (783), Expect = 3e-83
Identities = 144/260 (55%), Positives = 180/260 (69%), Gaps = 5/260 (1%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
FLD+ QWL+T+SQYD++ WN+FRD DDYFR W+P KPFDQALDP+KDPCLK+KCS
Sbjct: 38 FLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPCLKMKCSR 97
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGH 625
HKVC+ QD QTA+C+S + L R K+ V H+ W GP L CK CP + + VCGSDGH
Sbjct: 98 HKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPI-LSTCKQCPVVYPSPVCGSDGH 156
Query: 626 TYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDW 805
TY+ +CKLE+ AC GK ++ C+G AC+D E R +A+RL+DW
Sbjct: 157 TYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDW 216
Query: 806 FGALHEDANRVIK-PTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 982
F ALHE ++ K T + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +I
Sbjct: 217 FKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSI 276
Query: 983 YLDKYEPCIKPLFNSCDSFR 1042
YLDK E C K FNSCD+++
Sbjct: 277 YLDKNEQCTKAFFNSCDTYK 296
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 306 bits (783), Expect = 3e-83
Identities = 144/260 (55%), Positives = 180/260 (69%), Gaps = 5/260 (1%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
FLD+ QWL+T+SQYD++ WN+FRD DDYFR W+P KPFDQALDP+KDPCLK+KCS
Sbjct: 38 FLDDKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTWSPGKPFDQALDPAKDPCLKMKCSR 97
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGH 625
HKVC+ QD QTA+C+S + L R K+ V H+ W GP L CK CP + + VCGSDGH
Sbjct: 98 HKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPI-LSTCKQCPVVYPSPVCGSDGH 156
Query: 626 TYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDW 805
TY+ +CKLE+ AC GK ++ C+G AC+D E R +A+RL+DW
Sbjct: 157 TYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDW 216
Query: 806 FGALHEDANRVIK-PTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 982
F ALHE ++ K T + RFDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +I
Sbjct: 217 FKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSI 276
Query: 983 YLDKYEPCIKPLFNSCDSFR 1042
YLDK E C K FNSCD+++
Sbjct: 277 YLDKNEQCTKAFFNSCDTYK 296
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 276 bits (705), Expect = 3e-74
Identities = 128/231 (55%), Positives = 158/231 (68%), Gaps = 1/231 (0%)
Frame = +2
Query: 353 DDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNV 532
DDYFR W+P KPFDQALDP+KDPCLK+KCS HKVC+ QD QTA+C+S + L R K+ V
Sbjct: 16 DDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGV 75
Query: 533 AHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCDGXXXX 712
H+ W GP L CK CP + + VCGSDGHTY+ +CKLE+ AC GK ++ C+G
Sbjct: 76 DHRQWRGPI-LSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPC 134
Query: 713 XXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIK-PTSSDAAQGRFDTSI 889
AC+D E R +A+RL+DWF ALHE ++ K T + RFDTSI
Sbjct: 135 PSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSRFDTSI 194
Query: 890 LPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
LPICKDSLGWMFN+LD NYDLLLD SE+ +IYLDK E C K FNSCD+++
Sbjct: 195 LPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYK 245
>ref|NP_001191285.1| testican-3 isoform 7 [Homo sapiens].
Length = 393
Score = 268 bits (686), Expect = 5e-72
Identities = 131/257 (50%), Positives = 161/257 (62%), Gaps = 2/257 (0%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYDRDK-YWNRFRDDDYFRNWNPNKPFDQALDPSKDPCLKVKCSPHKV 454
FLD+ QWL+T+SQYD++ WN+FRDDDYFR W+P KPFDQALDP+KDPCLK+KCS HKV
Sbjct: 38 FLDDKQWLTTISQYDKEVGQWNKFRDDDYFRTWSPGKPFDQALDPAKDPCLKMKCSRHKV 97
Query: 455 CVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYT 634
C+ QD QTA+C+S + L R K+ V H+ W GP L CK CP + + VCGSDGHTY+
Sbjct: 98 CIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPI-LSTCKQCPVVYPSPVCGSDGHTYS 156
Query: 635 SKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGA 814
+CKLE+ AC GK ++ C+G
Sbjct: 157 FQCKLEYQACVLGKQISVKCEGHCPCPSD------------------------------- 185
Query: 815 LHEDANRVIKPTSSDAAQGR-FDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLD 991
KPTS+ R FDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYLD
Sbjct: 186 ---------KPTSTSRNVKRGFDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLD 236
Query: 992 KYEPCIKPLFNSCDSFR 1042
K E C K FNSCD+++
Sbjct: 237 KNEQCTKAFFNSCDTYK 253
>ref|NP_055582.1| testican-2 isoform 2 [Homo sapiens].
Length = 424
Score = 239 bits (611), Expect = 2e-63
Identities = 122/260 (46%), Positives = 162/260 (62%), Gaps = 5/260 (1%)
Frame = +2
Query: 278 FLDNDQWLSTVSQYD-RDKYWNRFRD---DDYFRNWNPNKPFDQALDPSKDPCLKVKCSP 445
F++++QWLS++SQY + K+WNRFRD DDY ++W N+ D+ALD +KDPC KVKCS
Sbjct: 38 FMEDEQWLSSISQYSGKIKHWNRFRDEVEDDYIKSWEDNQQGDEALDTTKDPCQKVKCSR 97
Query: 446 HKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGH 625
HKVC+ Q YQ A+C+SRK L R K+ V G + + CKPC Q A VCGSDGH
Sbjct: 98 HKVCIAQGYQRAMCISRKKLEHRIKQPTVKLH---GNKDSI-CKPCHMAQLASVCGSDGH 153
Query: 626 TYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXX-NACTDKELRNLASRLKD 802
TY+S CKLE AC + K L C+G CT ++L +L RL+D
Sbjct: 154 TYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQAATSTADGKPETCTGQDLADLGDRLRD 213
Query: 803 WFGALHEDANRVIKPTSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAI 982
WF LHE++ + +S D S+ CKDS+GWMF+KLD + DL LD +E+ AI
Sbjct: 214 WFQLLHENSKQNGSASSVAGPASGLDKSLGASCKDSIGWMFSKLDTSADLFLDQTELAAI 273
Query: 983 YLDKYEPCIKPLFNSCDSFR 1042
LDKYE CI+P FNSCD+++
Sbjct: 274 NLDKYEVCIRPFFNSCDTYK 293
>ref|NP_001191283.1| testican-3 isoform 5 [Homo sapiens].
Length = 344
Score = 223 bits (569), Expect = 2e-58
Identities = 106/205 (51%), Positives = 134/205 (65%), Gaps = 1/205 (0%)
Frame = +2
Query: 431 VKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWVGPSNLVKCKPCPAIQSAMVC 610
+KCS HKVC+ QD QTA+C+S + L R K+ V H+ W GP L CK CP + + VC
Sbjct: 1 MKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPI-LSTCKQCPVVYPSPVC 59
Query: 611 GSDGHTYTSKCKLEFHACSTGKSLTTLCDGXXXXXXXXXXXXXXXXXNACTDKELRNLAS 790
GSDGHTY+ +CKLE+ AC GK ++ C+G AC+D E R +A+
Sbjct: 60 GSDGHTYSFQCKLEYQACVLGKQISVKCEGHCPCPSDKPTSTSRNVKRACSDLEFREVAN 119
Query: 791 RLKDWFGALHEDANRVIKP-TSSDAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHS 967
RL+DWF ALHE ++ K T + RFDTSILPICKDSLGWMFN+LD NYDLLLD S
Sbjct: 120 RLRDWFKALHESGSQNKKTKTLLRPERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDQS 179
Query: 968 EINAIYLDKYEPCIKPLFNSCDSFR 1042
E+ +IYLDK E C K FNSCD+++
Sbjct: 180 ELRSIYLDKNEQCTKAFFNSCDTYK 204
>ref|NP_001191284.1| testican-3 isoform 6 [Homo sapiens].
Length = 340
Score = 187 bits (475), Expect = 1e-47
Identities = 90/176 (51%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Frame = +2
Query: 518 KKGNVAHKHWVGPSNLVKCKPCPAIQSAMVCGSDGHTYTSKCKLEFHACSTGKSLTTLCD 697
K+ V H+ W GP L CK CP + + VCGSDGHTY+ +CKLE+ AC GK ++ C+
Sbjct: 26 KEAGVDHRQWRGPI-LSTCKQCPVVYPSPVCGSDGHTYSFQCKLEYQACVLGKQISVKCE 84
Query: 698 GXXXXXXXXXXXXXXXXXNACTDKELRNLASRLKDWFGALHEDANRVIKP-TSSDAAQGR 874
G AC+D E R +A+RL+DWF ALHE ++ K T + R
Sbjct: 85 GHCPCPSDKPTSTSRNVKRACSDLEFREVANRLRDWFKALHESGSQNKKTKTLLRPERSR 144
Query: 875 FDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPCIKPLFNSCDSFR 1042
FDTSILPICKDSLGWMFN+LD NYDLLLD SE+ +IYLDK E C K FNSCD+++
Sbjct: 145 FDTSILPICKDSLGWMFNRLDTNYDLLLDQSELRSIYLDKNEQCTKAFFNSCDTYK 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,356,103
Number of extensions: 970265
Number of successful extensions: 5014
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4947
Number of HSP's successfully gapped: 12
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007916
(1043 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 375 e-101
Sscrofa_Chr14 74 2e-10
>Sscrofa_Chr02
|| Length = 162569375
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 165 agatgccagcgatcgcggtgctcgcggcggccgccgcggcgtggtgcttcctgcaggtcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145255085 agatgccagcgatcgcggtgctcgcggcggccgccgcggcgtggtgcttcctgcaggtcg 145255026
Query: 225 agagccggcacctggacgcgctcgccgggggcgcgggccccaacaacggcaatttcctag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145255025 agagccggcacctggacgcgctcgccgggggcgcgggccccaacaacggcaatttcctag 145254966
Query: 285 acaatgaccagtggctgagcacagtctcccagtacgaccgggacaagtactggaaccgct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145254965 acaatgaccagtggctgagcacagtctcccagtacgaccgggacaagtactggaaccgct 145254906
Query: 345 ttcgagatg 353
|||||||||
Sbjct: 145254905 ttcgagatg 145254897
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 873 ggtttgacaccagcatcctgcccatctgcaaggactccttgggctggatgttcaacaagt 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144736599 ggtttgacaccagcatcctgcccatctgcaaggactccttgggctggatgttcaacaagt 144736540
Query: 933 tggacatgaactacgacctcctgcttgaccactcagagatcaacgccatctacctggata 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144736539 tggacatgaactacgacctcctgcttgaccactcagagatcaacgccatctacctggata 144736480
Query: 993 agtacgagccctgtatcaagcctctcttcaattcgtgtgactccttta 1040
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144736479 agtacgagccctgtatcaagcctctcttcaattcgtgtgactccttta 144736432
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 511 caggcaaaagaaggggaacgtggcccacaaacactgggttggaccttcgaatttggtcaa 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144853520 caggcaaaagaaggggaacgtggcccacaaacactgggttggaccttcgaatttggtcaa 144853461
Query: 571 gtgcaagccctgtcccgcgatacagtccgccatggtctgcggctctgatggccacaccta 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144853460 gtgcaagccctgtcccgcgatacagtccgccatggtctgcggctctgatggccacaccta 144853401
Query: 631 tacatccaag 640
||||||||||
Sbjct: 144853400 tacatccaag 144853391
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 755 gcctgcacggacaaggagttgaggaacctcgcttcccggctcaaagactggttcggggcg 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144741290 gcctgcacggacaaggagttgaggaacctcgcttcccggctcaaagactggttcggggcg 144741231
Query: 815 cttcatgaggatgccaacagagtcatcaagcccaccagctccgacgcagcccaaggcag 873
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144741230 cttcatgaggatgccaacagagtcatcaagcccaccagctccgacgcagcccaaggcag 144741172
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 397 agccctggacccatccaaagacccctgcctgaaggtgaagtgcagccctcacaaggtgtg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144876479 agccctggacccatccaaagacccctgcctgaaggtgaagtgcagccctcacaaggtgtg 144876420
Query: 457 cgtgacccaggactaccagaccgccctgtgcgtcagccgcaagcacctgctccccagg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144876419 cgtgacccaggactaccagaccgccctgtgcgtcagccgcaagcacctgctccccagg 144876362
Score = 224 bits (113), Expect = 8e-56
Identities = 116/117 (99%)
Strand = Plus / Minus
Query: 639 agtgcaagttggagttccatgcttgttccactggcaagagtctcaccaccctctgcgatg 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 144806749 agtgcaagttggagttccatgcttgttccactggcaagagtctcaccaccctctgtgatg 144806690
Query: 699 ggccctgtccgtgtctcccggaacccgagccgccaaaacacaaggcagaaaagaatg 755
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144806689 ggccctgtccgtgtctcccggaacccgagccgccaaaacacaaggcagaaaagaatg 144806633
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 67 gcagaagcgcaagggagcgagcccgcggatcagccttctcggcgaccgcgccacaggagc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145255795 gcagaagcgcaagggagcgagcccgcggatcagccttctcggcgaccgcgccacaggagc 145255736
Query: 127 tcgagcaactcggtcgcgggcacccgggccgggccccaag 166
||||||||||||||||||||||||||||||||||||||||
Sbjct: 145255735 tcgagcaactcggtcgcgggcacccgggccgggccccaag 145255696
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 353 gatgattatttcagaaactggaatcccaacaagccttttgaccaag 398
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144985707 gatgattatttcagaaactggaatcccaacaagccttttgaccaag 144985662
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 353 gatgattatttcagaaactggaatcccaacaagccttttgaccaag 398
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145031590 gatgattatttcagaaactggaatcccaacaagccttttgaccaag 145031545
>Sscrofa_Chr14
|| Length = 153851969
Score = 73.8 bits (37), Expect = 2e-10
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 411 ccaaagacccctgcctgaaggtgaagtgcagccctcacaaggtgtgcgtgacccaggact 470
|||| |||||||||| ||||||||||||||||| ||||||||||||| | | |||| ||
Sbjct: 80906883 ccaaggacccctgccagaaggtgaagtgcagccgtcacaaggtgtgcattgctcagggct 80906824
Query: 471 accagaccgccctgtgcgtcagccgcaag 499
||||| ||| ||||| |||||||||||
Sbjct: 80906823 accagcgggccatgtgcatcagccgcaag 80906795
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,437,630
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 10
Length of query: 1043
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1022
Effective length of database: 2,808,413,156
Effective search space: 2870198245432
Effective search space used: 2870198245432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)