Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007919
(1066 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075078.1| transmembrane emp24 domain-containing protei... 390 e-108
Alignment gi|NP_001098966.1| transmembrane emp24 domain-containing protei... 283 1e-76
Alignment gi|NP_001039842.1| transmembrane emp24 domain-containing protei... 102 6e-22
Alignment gi|NP_001153290.1| transmembrane emp24 domain-containing protei... 98 1e-20
Alignment gi|NP_001033652.1| transmembrane emp24 domain-containing protei... 95 1e-19
Alignment gi|XP_002684844.1| PREDICTED: coated vesicle membrane protein-l... 86 4e-17
Alignment gi|XP_001250510.1| PREDICTED: coated vesicle membrane protein-l... 86 4e-17
Alignment gi|NP_001029984.1| transmembrane emp24 domain-containing protei... 63 5e-10
Alignment gi|NP_001193362.1| transmembrane emp24 domain-containing protei... 60 3e-09
Alignment gi|NP_001035639.1| transmembrane emp24 domain-containing protei... 53 4e-07
>ref|NP_001075078.1| transmembrane emp24 domain-containing protein 3 [Bos taurus].
Length = 218
Score = 390 bits (1001), Expect = e-108
Identities = 191/218 (87%), Positives = 199/218 (91%), Gaps = 2/218 (0%)
Frame = +2
Query: 125 MGSVTPRSASTXXXXXXX--QVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVIT 298
MG V PRS S Q ERPRGAELTFELPDNAKQCFHE+VEQGVKFSLDYQVIT
Sbjct: 1 MGGVVPRSVSALPLLLLLLLQAERPRGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVIT 60
Query: 299 GGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQ 478
GGHYDVDC+++DPLGNTIY ETKKQYDSFTH+AEVKGVYQFCFSNEFSTFSHKTVYFDFQ
Sbjct: 61 GGHYDVDCFMKDPLGNTIYSETKKQYDSFTHKAEVKGVYQFCFSNEFSTFSHKTVYFDFQ 120
Query: 479 VGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRV 658
VGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQ HYRLREAQDRARAEDL+SRV
Sbjct: 121 VGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQKHYRLREAQDRARAEDLNSRV 180
Query: 659 SYWSVGETIALFVVSFGQVLLLKSFFTEKRPMGRAVHS 772
SYWS+GETIALFVVSF QVLLLKSFFTEKRP+ R VHS
Sbjct: 181 SYWSIGETIALFVVSFSQVLLLKSFFTEKRPISRTVHS 218
>ref|NP_001098966.1| transmembrane emp24 domain-containing protein 7 [Bos taurus].
Length = 225
Score = 283 bits (725), Expect = 1e-76
Identities = 136/190 (71%), Positives = 162/190 (85%), Gaps = 1/190 (0%)
Frame = +2
Query: 182 VERPRGA-ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYR 358
V P GA E+TFELPDNAKQCF+ED+ QG K +L++QVITGGHYDVDC +EDP GN +Y+
Sbjct: 29 VPGPGGASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGNVLYK 88
Query: 359 ETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQ 538
E KKQYDS+T A G Y+FCFSNEFSTF+HKTVYFDFQVG++PP+ P NRV+ALTQ
Sbjct: 89 EMKKQYDSYTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQ 147
Query: 539 MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVL 718
MESACV+IHEALK+VID QTH+RLREAQ R+RAEDL++RV+YWSVGE + L VVS GQV
Sbjct: 148 MESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVF 207
Query: 719 LLKSFFTEKR 748
LLKSFF++KR
Sbjct: 208 LLKSFFSDKR 217
>ref|NP_001039842.1| transmembrane emp24 domain-containing protein 5 precursor [Bos
taurus].
Length = 226
Score = 102 bits (254), Expect = 6e-22
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Frame = +2
Query: 200 AELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYD 379
++ TF LP K+CF++ + ++YQV+ G D+D ++ P G T+ E +K
Sbjct: 31 SDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDG 90
Query: 380 SFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDF---QVGDEPPILPDMGNRVTALTQMESA 550
T EV G Y FCF N FST S K ++F+ +G++ D +T ++
Sbjct: 91 VHTIETEV-GDYMFCFDNTFSTISEKVIFFELILDNMGEQEQEQEDWKKYITGTDMLDMK 149
Query: 551 CVTIHEALKTVIDS-------QTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFG 709
I E++ ++ QT R EA+DR E RV++WS+ + + VVS
Sbjct: 150 LEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAI 209
Query: 710 QVLLLKSFFTEKR 748
QV +LKS F +KR
Sbjct: 210 QVYMLKSLFEDKR 222
>ref|NP_001153290.1| transmembrane emp24 domain-containing protein 2 [Bos taurus].
Length = 201
Score = 97.8 bits (242), Expect = 1e-20
Identities = 57/174 (32%), Positives = 86/174 (49%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 586
G Y+FCFSN ST + K V F +G E P DM ++E + A+ V
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
Query: 587 DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|NP_001033652.1| transmembrane emp24 domain-containing protein 1 precursor [Bos
taurus].
Length = 227
Score = 94.7 bits (234), Expect = 1e-19
Identities = 64/193 (33%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Frame = +2
Query: 203 ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDS 382
E TF LP KQCF++ +YQVI G DVD +E P G + E++K
Sbjct: 33 EFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFSLESPQGVLLVSESRKADGV 92
Query: 383 FTHRAEVKGVYQFCFSNEFSTFSHKTVYFD--FQVGDEPPILPDMGNRVTALTQMESACV 556
T G Y+ CF N FST S K V+F+ F + + V +E
Sbjct: 93 HTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDEEEVEGWAEAVEPEEILEVKME 152
Query: 557 TIHEALKTV-------IDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQV 715
I E+++T+ I T R EA+DR E RV++WS L +V+ QV
Sbjct: 153 DIKESIETMRIRLERSIQVLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQV 212
Query: 716 LLLKSFFTEKRPM 754
LK FF +KRP+
Sbjct: 213 CTLKRFFQDKRPV 225
>ref|XP_002684844.1| PREDICTED: coated vesicle membrane protein-like [Bos taurus].
Length = 201
Score = 86.3 bits (212), Expect = 4e-17
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 2/176 (1%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V G D++ + P IY+ ++ +T A +
Sbjct: 28 HAEECFFEWVTLGTKMGLIFEVAEDGFLDINMEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRV--TALTQMESACVTIHEALKT 580
G Y+FCFSN T + K V F +G E P DM L +M + + A+K
Sbjct: 88 GTYKFCFSNRMYTMTPKIVMFTIDIG-EVPKGQDMETEAHQNKLEEMINELTVVMTAVK- 145
Query: 581 VIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + ++E RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 --HEQEYMEVQERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|XP_001250510.1| PREDICTED: coated vesicle membrane protein-like [Bos taurus].
Length = 201
Score = 86.3 bits (212), Expect = 4e-17
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 2/176 (1%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V G D++ + P IY+ ++ +T A +
Sbjct: 28 HAEECFFEWVTLGTKMGLIFEVAEDGFLDINMEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRV--TALTQMESACVTIHEALKT 580
G Y+FCFSN T + K V F +G E P DM L +M + + A+K
Sbjct: 88 GTYKFCFSNRMYTMTPKIVMFTIDIG-EVPKGQDMETEAHQNKLEEMINELTVVMTAVK- 145
Query: 581 VIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + ++E RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 --HEQEYMEVQERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|NP_001029984.1| transmembrane emp24 domain-containing protein 9 precursor [Bos
taurus].
Length = 235
Score = 62.8 bits (151), Expect = 5e-10
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Frame = +2
Query: 194 RGAELTFELPDNAKQCFHEDVEQGV------------KFSLDYQVITGGHYDVDCYVEDP 337
RG L F + + K+CF E++ K +YQ T G + V+DP
Sbjct: 34 RGGALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPG-LGMFVEVKDP 92
Query: 338 LGNTIYRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFSHKT--VYFDFQVGDEPPIL 502
I FT + G +Q C S +FS F+ V+ D QVG+
Sbjct: 93 EDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDY 152
Query: 503 PDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGET 682
++ + L++++ + E ++ + Q + R RE + R +E + RV +WS+ +T
Sbjct: 153 AEIAAK-DKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQT 211
Query: 683 IALFVVSFGQVLLLKSFFTEKR 748
+ L + Q+ LKSFF K+
Sbjct: 212 LILVAIGVWQMRHLKSFFEAKK 233
>ref|NP_001193362.1| transmembrane emp24 domain-containing protein 4 [Bos taurus].
Length = 216
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDY---------QVITGGHYDVDCYVE--DPLGNTI 352
L F + + K+CF E++ +Y +V + +VE DP G +
Sbjct: 19 LYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVV 78
Query: 353 YRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFS--HKTVYFDFQVGDEPPILPDMGN 517
FT + G +Q C S + F+ V+ D QVG+ P++
Sbjct: 79 LSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGRLRVHLDIQVGEHTNNYPEIAA 138
Query: 518 RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFV 697
+ LT+++ + + ++ + Q + R RE + R +E + RV +WS+ +T+ L +
Sbjct: 139 K-DKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLISESTNQRVLWWSIAQTVILIL 197
Query: 698 VSFGQVLLLKSFFTEKR 748
Q+ LKSFF K+
Sbjct: 198 TGIWQMRHLKSFFEAKK 214
>ref|NP_001035639.1| transmembrane emp24 domain-containing protein 10 precursor [Bos
taurus].
Length = 219
Score = 53.1 bits (126), Expect = 4e-07
Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 5/186 (2%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDYQVIT----GGHYDVDCYVEDPLGNTIYRETKKQ 373
++F LP N+++C E++ + + + Y++ G + D G+ +Y +
Sbjct: 32 ISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTHLKITDSAGHILYSKEDAT 91
Query: 374 YDSFTHRAEVKGVYQFCF-SNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESA 550
F E +++ CF S + V D + G E ++ +V L +E
Sbjct: 92 KGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIA-KVEKLKPLEVE 150
Query: 551 CVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKS 730
+ + +++++ + + RE + R E ++RV Y+S+ L ++ QV L+
Sbjct: 151 LRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRR 210
Query: 731 FFTEKR 748
FF K+
Sbjct: 211 FFKAKK 216
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,739,683
Number of extensions: 1614322
Number of successful extensions: 8025
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7994
Number of HSP's successfully gapped: 13
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007919
(1066 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191267.1| transmembrane emp24 domain-containing protei... 284 9e-77
Alignment gi|XP_537072.2| PREDICTED: similar to Transmembrane emp24 domai... 100 3e-21
Alignment gi|XP_857949.1| PREDICTED: similar to coated vesicle membrane p... 98 2e-20
Alignment gi|XP_858034.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 96 4e-20
Alignment gi|XP_857993.1| PREDICTED: similar to coated vesicle membrane p... 96 8e-20
Alignment gi|XP_542064.1| PREDICTED: similar to interleukin 1 receptor-li... 95 1e-19
Alignment gi|XP_855879.1| PREDICTED: similar to transmembrane emp24 prote... 64 3e-10
Alignment gi|XP_538565.2| PREDICTED: similar to transmembrane emp24 prote... 63 5e-10
Alignment gi|XP_532721.2| PREDICTED: similar to transmembrane emp24 prote... 60 5e-09
Alignment gi|XP_857976.1| PREDICTED: similar to transmembrane emp24 prote... 55 1e-07
>ref|NP_001191267.1| transmembrane emp24 domain-containing protein 7 [Canis lupus
familiaris].
Length = 226
Score = 284 bits (727), Expect = 9e-77
Identities = 136/187 (72%), Positives = 161/187 (86%), Gaps = 1/187 (0%)
Frame = +2
Query: 191 PRGA-ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETK 367
P GA E+TFELPDNAKQCF+ED+ QG K +L++QVITGGHYDVDC +EDP GN +Y+E K
Sbjct: 33 PGGASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGNVLYKEMK 92
Query: 368 KQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMES 547
KQYDSFT A G Y+FCFSNEFSTF+HKTVYFDFQVG++PP+ P NRV+ALTQMES
Sbjct: 93 KQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQMES 151
Query: 548 ACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLK 727
ACV+IHEALK+VID QTH+RLREAQ R+RAEDL++RV+YWSVGE + L VVS GQV LLK
Sbjct: 152 ACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLK 211
Query: 728 SFFTEKR 748
SFF++KR
Sbjct: 212 SFFSDKR 218
>ref|XP_537072.2| PREDICTED: similar to Transmembrane emp24 domain containing protein
5 precursor [Canis familiaris].
Length = 472
Score = 100 bits (248), Expect = 3e-21
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Frame = +2
Query: 200 AELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYD 379
++ TF LP K+CF++ + ++YQV+ G D+D ++ P G T+ E +K
Sbjct: 277 SDFTFTLPAGQKECFYQPMPPKASLEIEYQVLDGAGLDIDFHLASPEGRTLVFEQRKSDG 336
Query: 380 SFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDF---QVGDEPPILPDMGNRVTALTQMESA 550
T E G Y FCF N FST S K ++F+ +G++ D +T ++
Sbjct: 337 VHTVETE-DGDYMFCFDNTFSTISEKVIFFELILDNMGEQEQEQEDWKKYITGTDMLDMK 395
Query: 551 CVTIHEALKTVI-------DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFG 709
I E++ ++ QT R EA+DR E RV++WS+ + + VVS
Sbjct: 396 LEDILESINSIKARLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAI 455
Query: 710 QVLLLKSFFTEKR 748
QV +LKS F +KR
Sbjct: 456 QVYMLKSLFEDKR 468
>ref|XP_857949.1| PREDICTED: similar to coated vesicle membrane protein isoform 2
[Canis familiaris].
Length = 201
Score = 97.8 bits (242), Expect = 2e-20
Identities = 57/174 (32%), Positives = 86/174 (49%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 586
G Y+FCFSN ST + K V F +G E P DM ++E + A+ V
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
Query: 587 DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|XP_858034.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
isoform 4 [Canis familiaris].
Length = 742
Score = 96.3 bits (238), Expect = 4e-20
Identities = 56/170 (32%), Positives = 84/170 (49%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 586
G Y+FCFSN ST + K V F +G E P DM ++E + A+ V
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
Query: 587 DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFF 736
Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF
Sbjct: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 195
>ref|XP_857993.1| PREDICTED: similar to coated vesicle membrane protein isoform 3
[Canis familiaris].
Length = 208
Score = 95.5 bits (236), Expect = 8e-20
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALT------QMESACVTIHE 568
G Y+FCFSN ST + K V F +G E P DM T ++E +
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEGGGDTWDAHQNKLEEMINELAV 146
Query: 569 ALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
A+ V Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 147 AMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 206
>ref|XP_542064.1| PREDICTED: similar to interleukin 1 receptor-like 1 ligand
precursor [Canis familiaris].
Length = 226
Score = 94.7 bits (234), Expect = 1e-19
Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Frame = +2
Query: 203 ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDS 382
E TF LP KQCF++ +YQVI G DVD +E P G + E++K
Sbjct: 32 EFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGV 91
Query: 383 FTHRAEVKGVYQFCFSNEFSTFSHKTVYFD--FQVGDEPPILPDMGNRVTALTQMESACV 556
T G Y+ CF N FST S K V+F+ F + + V ++
Sbjct: 92 HTVEPTEAGDYKLCFDNSFSTISDKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKME 151
Query: 557 TIHEALKTV-------IDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQV 715
I E+++T+ I T R EA+DR E RV++WS L +V+ QV
Sbjct: 152 DIKESIETMKTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQV 211
Query: 716 LLLKSFFTEKRPM 754
LK FF +KRP+
Sbjct: 212 CTLKRFFQDKRPV 224
>ref|XP_855879.1| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 4 isoform 2 [Canis familiaris].
Length = 208
Score = 63.5 bits (153), Expect = 3e-10
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 8/189 (4%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDV-EQGVKFSLDYQVITGGHYDVDCYVE--DPLGNTIYRETKKQY 376
L F + + K+CF E++ ++ + + +V + +VE DP G +
Sbjct: 19 LYFHIGETEKRCFIEEIPDETMMWDKQKEVFLPSTPGLGMHVEVKDPEGKVVLSRQYGSE 78
Query: 377 DSFTHRAEVKGVYQFCF---SNEFSTFS--HKTVYFDFQVGDEPPILPDMGNRVTALTQM 541
FT + + G +Q C S + F+ V+ D QVG+ P++ + LT++
Sbjct: 79 GRFTFTSHMPGDHQICLHSNSTRMALFAGGRLRVHLDIQVGEHANNYPEIAAK-DKLTEL 137
Query: 542 ESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLL 721
+ + + ++ + Q + R RE + R +E + RV +WS+ +T L + Q+
Sbjct: 138 QLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTAILLLTGIWQMRH 197
Query: 722 LKSFFTEKR 748
LKSFF K+
Sbjct: 198 LKSFFEAKK 206
>ref|XP_538565.2| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 9 isoform 1 [Canis familiaris].
Length = 235
Score = 62.8 bits (151), Expect = 5e-10
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Frame = +2
Query: 194 RGAELTFELPDNAKQCFHEDVEQGV------------KFSLDYQVITGGHYDVDCYVEDP 337
RG L F + + K+CF E++ K +YQ T G + V+DP
Sbjct: 34 RGGALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPG-LGMFVEVKDP 92
Query: 338 LGNTIYRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFSHKT--VYFDFQVGDEPPIL 502
I FT + G +Q C S +FS F+ V+ D QVG+
Sbjct: 93 EDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDY 152
Query: 503 PDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGET 682
++ + L++++ + E ++ + Q + R RE + R +E + RV +WS+ +T
Sbjct: 153 AEIAAK-DKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQT 211
Query: 683 IALFVVSFGQVLLLKSFFTEKR 748
+ L + Q+ LKSFF K+
Sbjct: 212 LILVAIGVWQMRHLKSFFEAKK 233
>ref|XP_532721.2| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 4 isoform 1 [Canis familiaris].
Length = 216
Score = 59.7 bits (143), Expect = 5e-09
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDY---------QVITGGHYDVDCYVE--DPLGNTI 352
L F + + K+CF E++ +Y +V + +VE DP G +
Sbjct: 19 LYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVV 78
Query: 353 YRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFS--HKTVYFDFQVGDEPPILPDMGN 517
FT + + G +Q C S + F+ V+ D QVG+ P++
Sbjct: 79 LSRQYGSEGRFTFTSHMPGDHQICLHSNSTRMALFAGGRLRVHLDIQVGEHANNYPEIAA 138
Query: 518 RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFV 697
+ LT+++ + + ++ + Q + R RE + R +E + RV +WS+ +T L +
Sbjct: 139 K-DKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTAILLL 197
Query: 698 VSFGQVLLLKSFFTEKR 748
Q+ LKSFF K+
Sbjct: 198 TGIWQMRHLKSFFEAKK 214
>ref|XP_857976.1| PREDICTED: similar to transmembrane emp24 protein transport domain
containing 9 isoform 2 [Canis familiaris].
Length = 151
Score = 55.1 bits (131), Expect = 1e-07
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
Frame = +2
Query: 326 VEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFSHKT--VYFDFQVGDE 490
V+DP I FT + G +Q C S +FS F+ V+ D QVG+
Sbjct: 5 VKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEH 64
Query: 491 PPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWS 670
++ + L++++ + E ++ + Q + R RE + R +E + RV +WS
Sbjct: 65 ANDYAEIAAK-DKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWS 123
Query: 671 VGETIALFVVSFGQVLLLKSFFTEKR 748
+ +T+ L + Q+ LKSFF K+
Sbjct: 124 ILQTLILVAIGVWQMRHLKSFFEAKK 149
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,792,052
Number of extensions: 1661008
Number of successful extensions: 8420
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8391
Number of HSP's successfully gapped: 14
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007919
(1066 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191292.1| transmembrane emp24 domain-containing protei... 426 e-119
Alignment gi|NP_001189469.1| transmembrane emp24 domain-containing protei... 285 4e-77
Alignment gi|XP_003356700.1| PREDICTED: transmembrane emp24 domain-contai... 276 1e-74
Alignment gi|NP_001230624.1| transmembrane emp24 domain-containing protei... 102 4e-22
Alignment gi|XP_003359135.1| PREDICTED: transmembrane emp24 domain-contai... 98 9e-21
Alignment gi|XP_003354108.1| PREDICTED: transmembrane emp24 domain-contai... 96 3e-20
Alignment gi|XP_003123250.1| PREDICTED: transmembrane emp24 domain-contai... 96 3e-20
Alignment gi|XP_003359136.1| PREDICTED: transmembrane emp24 domain-contai... 96 4e-20
Alignment gi|XP_003123722.1| PREDICTED: transmembrane emp24 domain-contai... 63 3e-10
Alignment gi|XP_003134940.1| PREDICTED: transmembrane emp24 domain-contai... 61 1e-09
>ref|NP_001191292.1| transmembrane emp24 domain-containing protein 3 [Sus scrofa].
Length = 216
Score = 426 bits (1094), Expect = e-119
Identities = 209/216 (96%), Positives = 209/216 (96%)
Frame = +2
Query: 125 MGSVTPRSASTXXXXXXXQVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGG 304
MGSVTPRSAST QVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGG
Sbjct: 1 MGSVTPRSASTLLLLLLLQVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGG 60
Query: 305 HYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG 484
HYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG
Sbjct: 61 HYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG 120
Query: 485 DEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSY 664
DEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSY
Sbjct: 121 DEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSY 180
Query: 665 WSVGETIALFVVSFGQVLLLKSFFTEKRPMGRAVHS 772
WSVGETIALFVVSFGQVLLLKSFFTEKRPMGRAVHS
Sbjct: 181 WSVGETIALFVVSFGQVLLLKSFFTEKRPMGRAVHS 216
>ref|NP_001189469.1| transmembrane emp24 domain-containing protein 7 [Sus scrofa].
Length = 225
Score = 285 bits (728), Expect = 4e-77
Identities = 137/190 (72%), Positives = 162/190 (85%), Gaps = 1/190 (0%)
Frame = +2
Query: 182 VERPRGA-ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYR 358
V P GA E+TFELPDNAKQCF+ED+ QG K +L++QVITGGHYDVDC +EDP GN +Y+
Sbjct: 29 VPGPGGASEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGNVLYK 88
Query: 359 ETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQ 538
E KKQYDSFT A G Y+FCFSNEFSTF+HKTVYFDFQVG++PP+ P NRV+ALTQ
Sbjct: 89 EMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQ 147
Query: 539 MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVL 718
MESACV+IHEALK+VID QTH+RLREAQ R+RAEDL++RV+YWSVGE + L VVS GQV
Sbjct: 148 MESACVSIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVF 207
Query: 719 LLKSFFTEKR 748
LLKSFF++KR
Sbjct: 208 LLKSFFSDKR 217
>ref|XP_003356700.1| PREDICTED: transmembrane emp24 domain-containing protein 3-like
[Sus scrofa].
Length = 196
Score = 276 bits (706), Expect = 1e-74
Identities = 138/162 (85%), Positives = 142/162 (87%)
Frame = +2
Query: 125 MGSVTPRSASTXXXXXXXQVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGG 304
MGSVTPRSAS QVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGG
Sbjct: 1 MGSVTPRSASALLLLLLLQVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGG 60
Query: 305 HYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG 484
HYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG
Sbjct: 61 HYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG 120
Query: 485 DEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRL 610
DEPPILPDMGNRVTALTQ + VT A + ++DS T Y L
Sbjct: 121 DEPPILPDMGNRVTALTQ--CSVVTSAHAWRVLLDS-TRYEL 159
>ref|NP_001230624.1| transmembrane emp24 domain-containing protein 5 [Sus scrofa].
Length = 226
Score = 102 bits (254), Expect = 4e-22
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Frame = +2
Query: 200 AELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYD 379
++ TF LP K+CF++ + ++YQV+ G D+D ++ P G T+ E +K
Sbjct: 31 SDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGRTLVFEQRKSDG 90
Query: 380 SFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDF---QVGDEPPILPDMGNRVTALTQMESA 550
T EV G Y FCF N FST S K ++F+ +G++ D +T ++
Sbjct: 91 VHTIETEV-GDYMFCFDNTFSTISEKVIFFELILDNMGEQAEEQEDWKKYITGTDMLDMK 149
Query: 551 CVTIHEALKTVIDS-------QTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFG 709
I E++ ++ QT R EA+DR E RV++WS+ + + VVS
Sbjct: 150 LEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAI 209
Query: 710 QVLLLKSFFTEKR 748
QV +LKS F +KR
Sbjct: 210 QVYMLKSLFEDKR 222
>ref|XP_003359135.1| PREDICTED: transmembrane emp24 domain-containing protein 2-like
isoform 1 [Sus scrofa].
Length = 201
Score = 97.8 bits (242), Expect = 9e-21
Identities = 57/174 (32%), Positives = 86/174 (49%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 586
G Y+FCFSN ST + K V F +G E P DM ++E + A+ V
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
Query: 587 DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|XP_003354108.1| PREDICTED: transmembrane emp24 domain-containing protein 1-like
[Sus scrofa].
Length = 227
Score = 95.9 bits (237), Expect = 3e-20
Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Frame = +2
Query: 203 ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDS 382
E TF LP KQCF++ +YQVI G DVD +E P G + E++K
Sbjct: 33 EFTFLLPAGRKQCFYQSAPANASLETEYQVIAGAGLDVDFTLESPQGVLLVSESRKADGV 92
Query: 383 FTHRAEVKGVYQFCFSNEFSTFSHKTVYFD--FQVGDEPPILPDMGNRVTALTQMESACV 556
T G Y+ CF N FST S K V+F+ F + + V ++
Sbjct: 93 HTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKME 152
Query: 557 TIHEALKTV-------IDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQV 715
I E+++T+ I T R EA+DR E RV++WS L +V+ QV
Sbjct: 153 DIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQV 212
Query: 716 LLLKSFFTEKRPM 754
LK FF +KRP+
Sbjct: 213 CTLKRFFQDKRPV 225
>ref|XP_003123250.1| PREDICTED: transmembrane emp24 domain-containing protein 1-like
[Sus scrofa].
Length = 227
Score = 95.9 bits (237), Expect = 3e-20
Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Frame = +2
Query: 203 ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDS 382
E TF LP KQCF++ +YQVI G DVD +E P G + E++K
Sbjct: 33 EFTFLLPAGRKQCFYQSAPANASLETEYQVIAGAGLDVDFTLESPQGVLLVSESRKADGV 92
Query: 383 FTHRAEVKGVYQFCFSNEFSTFSHKTVYFD--FQVGDEPPILPDMGNRVTALTQMESACV 556
T G Y+ CF N FST S K V+F+ F + + V ++
Sbjct: 93 HTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKME 152
Query: 557 TIHEALKTV-------IDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQV 715
I E+++T+ I T R EA+DR E RV++WS L +V+ QV
Sbjct: 153 DIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQV 212
Query: 716 LLLKSFFTEKRPM 754
LK FF +KRP+
Sbjct: 213 CTLKRFFQDKRPV 225
>ref|XP_003359136.1| PREDICTED: transmembrane emp24 domain-containing protein 2-like
isoform 2 [Sus scrofa].
Length = 208
Score = 95.5 bits (236), Expect = 4e-20
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALT------QMESACVTIHE 568
G Y+FCFSN ST + K V F +G E P DM T ++E +
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEGGGDTWDAHQNKLEEMINELAV 146
Query: 569 ALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
A+ V Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 147 AMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 206
>ref|XP_003123722.1| PREDICTED: transmembrane emp24 domain-containing protein 9-like
[Sus scrofa].
Length = 235
Score = 62.8 bits (151), Expect = 3e-10
Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Frame = +2
Query: 194 RGAELTFELPDNAKQCFHEDVEQGV------------KFSLDYQVITGGHYDVDCYVEDP 337
RG L F + + K+CF E++ K +YQ T G + V+DP
Sbjct: 34 RGGALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPG-LGMFVEVKDP 92
Query: 338 LGNTIYRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFSHKT--VYFDFQVGDEPPIL 502
I FT + G +Q C S +FS F+ V+ D QVG+
Sbjct: 93 EDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDY 152
Query: 503 PDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGET 682
++ + L++++ + E ++ + Q + R RE + R +E + RV +WS+ +T
Sbjct: 153 AEIAAK-DKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQT 211
Query: 683 IALFVVSFGQVLLLKSFFTEKR 748
+ L + Q+ LKSFF K+
Sbjct: 212 LILVAIGVWQMRHLKSFFEAKK 233
>ref|XP_003134940.1| PREDICTED: transmembrane emp24 domain-containing protein 4-like
[Sus scrofa].
Length = 424
Score = 60.8 bits (146), Expect = 1e-09
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDY---------QVITGGHYDVDCYVE--DPLGNTI 352
L F + + K+CF E++ +Y +V + +VE DP G +
Sbjct: 227 LYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVV 286
Query: 353 YRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFS--HKTVYFDFQVGDEPPILPDMGN 517
FT + G +Q C S + F+ V+ D QVG+ P++
Sbjct: 287 LSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIAA 346
Query: 518 RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFV 697
+ LT+++ + + ++ + Q + R RE + R +E + RV +WS+ +T+ L +
Sbjct: 347 K-DKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILIL 405
Query: 698 VSFGQVLLLKSFFTEKR 748
Q+ LKSFF K+
Sbjct: 406 TGIWQMRHLKSFFEAKK 422
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,549,611
Number of extensions: 1050127
Number of successful extensions: 5200
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5155
Number of HSP's successfully gapped: 13
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007919
(1066 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079636.2| transmembrane emp24 domain-containing protein 3... 373 e-103
Alignment gi|NP_079974.1| transmembrane emp24 protein transport domain co... 283 2e-76
Alignment gi|NP_083152.1| transmembrane emp24 domain-containing protein 5... 102 4e-22
Alignment gi|NP_034874.2| transmembrane emp24 domain-containing protein 1... 99 6e-21
Alignment gi|XP_001478063.1| PREDICTED: transmembrane emp24 domain-contai... 98 1e-20
Alignment gi|NP_062744.1| transmembrane emp24 domain-containing protein 2... 98 1e-20
Alignment gi|NP_080487.2| transmembrane emp24 domain-containing protein 9... 63 3e-10
Alignment gi|NP_598781.1| transmembrane emp24 domain-containing protein 4... 60 3e-09
Alignment gi|NP_081051.1| transmembrane emp24 domain-containing protein 1... 53 4e-07
Alignment gi|XP_001478849.1| PREDICTED: transmembrane emp24 domain-contai... 52 6e-07
>ref|NP_079636.2| transmembrane emp24 domain-containing protein 3 precursor [Mus
musculus].
Length = 221
Score = 373 bits (958), Expect = e-103
Identities = 181/198 (91%), Positives = 188/198 (94%)
Frame = +2
Query: 179 QVERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYR 358
+ E R AELTFELPDNAKQCFHE+VEQGVKFSLDYQVITGGHYDVDCYVEDP GN IYR
Sbjct: 24 RAEPLRSAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPRGNVIYR 83
Query: 359 ETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQ 538
ETKKQYDSFT++ E KGVY+FCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQ
Sbjct: 84 ETKKQYDSFTYKTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQ 143
Query: 539 MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVL 718
MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDL+SRVSYWSVGETIALFVVSF QVL
Sbjct: 144 MESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVL 203
Query: 719 LLKSFFTEKRPMGRAVHS 772
LLKSFFTEKRP+ RAVHS
Sbjct: 204 LLKSFFTEKRPVNRAVHS 221
>ref|NP_079974.1| transmembrane emp24 protein transport domain containing 7 [Mus
musculus].
Length = 224
Score = 283 bits (723), Expect = 2e-76
Identities = 133/184 (72%), Positives = 159/184 (86%)
Frame = +2
Query: 197 GAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQY 376
G+E+TFELPDNAKQCF+ED+ QG K +L++QVITGGHYDVDC +EDP G +Y+E KKQY
Sbjct: 34 GSEITFELPDNAKQCFYEDITQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQY 93
Query: 377 DSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACV 556
DSFT A G Y+FCFSNEFSTF+HKTVYFDFQVG++PP+ P NRV+ALTQMESACV
Sbjct: 94 DSFTFTASRNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQMESACV 152
Query: 557 TIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFF 736
+IHEALK+VID QTH+RLREAQ R+RAEDL++RV+YWSVGE + L VVS GQV LLKSFF
Sbjct: 153 SIHEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSVGQVFLLKSFF 212
Query: 737 TEKR 748
++KR
Sbjct: 213 SDKR 216
>ref|NP_083152.1| transmembrane emp24 domain-containing protein 5 precursor [Mus
musculus].
Length = 229
Score = 102 bits (255), Expect = 4e-22
Identities = 64/193 (33%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Frame = +2
Query: 200 AELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYD 379
++ TF LP K+CF++ + ++YQV+ GG D+D ++ P G T+ E +K
Sbjct: 34 SDFTFTLPAGRKECFYQPMPLKASLEIEYQVLDGGELDIDFHLTSPEGRTLVFEQRKSDG 93
Query: 380 SFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDF---QVGDEPPILPDMGNRVTALTQMESA 550
T E G Y FCF N FST S K ++F+ +G+E D +T +E
Sbjct: 94 VHTIETE-DGDYMFCFDNTFSTISEKVIFFELILDNMGEEVQGQEDWKKYITNTDVLEMK 152
Query: 551 CVTIHEALKTVIDS-------QTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFG 709
I E++ ++ QT R EA+DR E RV++WSV + + VVS
Sbjct: 153 LEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSVVNLMVMVVVSAI 212
Query: 710 QVLLLKSFFTEKR 748
QV LKS F +KR
Sbjct: 213 QVYTLKSLFEDKR 225
>ref|NP_034874.2| transmembrane emp24 domain-containing protein 1 precursor [Mus
musculus].
Length = 227
Score = 99.0 bits (245), Expect = 6e-21
Identities = 64/193 (33%), Positives = 89/193 (46%), Gaps = 9/193 (4%)
Frame = +2
Query: 203 ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDS 382
E TF LP KQCF++ +YQVI G DVD +E P G + E++K
Sbjct: 33 EFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGV 92
Query: 383 FTHRAEVKGVYQFCFSNEFSTFSHKTVYFD--FQVGDEPPILPDMGNRVTALTQMESACV 556
T G Y+ CF N FST S K V+F+ F + + V ++
Sbjct: 93 HTVEPTEAGDYRLCFDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKME 152
Query: 557 TIHEALKTV-------IDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQV 715
I E+++T+ I T R EA+DR ED RV++WS L +V+ QV
Sbjct: 153 DIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQV 212
Query: 716 LLLKSFFTEKRPM 754
LK FF +KRP+
Sbjct: 213 CTLKRFFHDKRPV 225
>ref|XP_001478063.1| PREDICTED: transmembrane emp24 domain-containing protein 2-like
[Mus musculus].
Length = 201
Score = 97.8 bits (242), Expect = 1e-20
Identities = 57/174 (32%), Positives = 86/174 (49%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 586
G Y+FCFSN ST + K V F +G E P DM ++E + A+ V
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
Query: 587 DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|NP_062744.1| transmembrane emp24 domain-containing protein 2 precursor [Mus
musculus].
Length = 201
Score = 97.8 bits (242), Expect = 1e-20
Identities = 57/174 (32%), Positives = 86/174 (49%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 586
G Y+FCFSN ST + K V F +G E P DM ++E + A+ V
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
Query: 587 DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|NP_080487.2| transmembrane emp24 domain-containing protein 9 precursor [Mus
musculus].
Length = 235
Score = 63.2 bits (152), Expect = 3e-10
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 17/202 (8%)
Frame = +2
Query: 194 RGAELTFELPDNAKQCFHEDVEQGV------------KFSLDYQVITGGHYDVDCYVEDP 337
RG+ L F + + K+CF E++ K +YQ T G + V+DP
Sbjct: 34 RGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPG-LGMFVEVKDP 92
Query: 338 LGNTIYRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFSHKT--VYFDFQVGDEPPIL 502
I FT + G +Q C S +FS F+ V+ D QVG+
Sbjct: 93 EDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDY 152
Query: 503 PDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGET 682
++ + L++++ + E ++ + Q + R RE + R +E + RV +WS+ +T
Sbjct: 153 AEIAAK-DKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQT 211
Query: 683 IALFVVSFGQVLLLKSFFTEKR 748
+ L + Q+ LKSFF K+
Sbjct: 212 LILVAIGVWQMRHLKSFFEAKK 233
>ref|NP_598781.1| transmembrane emp24 domain-containing protein 4 precursor [Mus
musculus].
Length = 227
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDY---------QVITGGHYDVDCYVE--DPLGNTI 352
L F + + K+CF E++ +Y +V + +VE DP G +
Sbjct: 30 LYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVV 89
Query: 353 YRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFS--HKTVYFDFQVGDEPPILPDMGN 517
FT + G +Q C S + F+ V+ D QVG+ P++
Sbjct: 90 LSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAA 149
Query: 518 RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFV 697
+ LT+++ + + ++ + Q + R RE + R +E + RV +WS+ +T+ L +
Sbjct: 150 K-DKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILIL 208
Query: 698 VSFGQVLLLKSFFTEKR 748
Q+ LKSFF K+
Sbjct: 209 TGIWQMRHLKSFFEAKK 225
>ref|NP_081051.1| transmembrane emp24 domain-containing protein 10 precursor [Mus
musculus].
Length = 219
Score = 53.1 bits (126), Expect = 4e-07
Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 5/186 (2%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDYQVIT----GGHYDVDCYVEDPLGNTIYRETKKQ 373
++F LP N+++C E++ + + + Y++ G + D G+ +Y +
Sbjct: 32 ISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTHLKITDSAGHILYAKEDAT 91
Query: 374 YDSFTHRAEVKGVYQFCF-SNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESA 550
F E +++ CF S + V D + G E ++ +V L +E
Sbjct: 92 KGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIA-KVEKLKPLEVE 150
Query: 551 CVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKS 730
+ + +++++ + + RE + R E ++RV Y+S+ L ++ QV L+
Sbjct: 151 LRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRR 210
Query: 731 FFTEKR 748
FF K+
Sbjct: 211 FFKAKK 216
>ref|XP_001478849.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like
[Mus musculus].
Length = 219
Score = 52.4 bits (124), Expect = 6e-07
Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 5/186 (2%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDYQVIT----GGHYDVDCYVEDPLGNTIYRETKKQ 373
++F LP N+++C E++ + + + Y++ G + D G+ +Y +
Sbjct: 32 ISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRPHLKITDSAGHILYAKEDAT 91
Query: 374 YDSFTHRAEVKGVYQFCF-SNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESA 550
F E +++ CF S + V D + G E ++ +V L +E
Sbjct: 92 KGKFAFTTEDYDMFEVCFESKGTGQIPDQLVILDMKHGVEAKNYEEIA-KVEKLKPLEVE 150
Query: 551 CVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKS 730
+ + +++++ + + RE + R E ++RV Y+S+ L ++ QV L+
Sbjct: 151 LRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRR 210
Query: 731 FFTEKR 748
FF K+
Sbjct: 211 FFKAKK 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,683,738
Number of extensions: 1323740
Number of successful extensions: 5918
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5882
Number of HSP's successfully gapped: 11
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007919
(1066 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031390.1| transmembrane emp24 domain-containing protein 3... 393 e-109
Alignment gi|NP_861974.1| transmembrane emp24 domain-containing protein 7... 283 2e-76
Alignment gi|NP_001157940.1| TRAM adaptor with GOLD domain isoform 1 [Hom... 247 1e-65
Alignment gi|NP_001157941.1| TRAM adaptor with GOLD domain isoform 2 [Hom... 243 3e-64
Alignment gi|NP_057124.3| transmembrane emp24 domain-containing protein 5... 101 1e-21
Alignment gi|NP_006806.1| transmembrane emp24 domain-containing protein 2... 98 1e-20
Alignment gi|NP_006849.1| transmembrane emp24 domain-containing protein 1... 95 1e-19
Alignment gi|NP_001161302.1| transmembrane emp24 domain-containing protei... 71 1e-12
Alignment gi|NP_059980.2| transmembrane emp24 domain-containing protein 9... 63 4e-10
Alignment gi|NP_872353.2| transmembrane emp24 domain-containing protein 4... 60 3e-09
>ref|NP_031390.1| transmembrane emp24 domain-containing protein 3 precursor [Homo
sapiens].
Length = 217
Score = 393 bits (1009), Expect = e-109
Identities = 195/217 (89%), Positives = 201/217 (92%), Gaps = 1/217 (0%)
Frame = +2
Query: 125 MGSVTPRSASTXXXXXXXQ-VERPRGAELTFELPDNAKQCFHEDVEQGVKFSLDYQVITG 301
MGS PRSAS + E+P GAELTFELPDNAKQCFHE+VEQGVKFSLDYQVITG
Sbjct: 1 MGSTVPRSASVLLLLLLLRRAEQPCGAELTFELPDNAKQCFHEEVEQGVKFSLDYQVITG 60
Query: 302 GHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQV 481
GHYDVDCYVEDP GNTIYRETKKQYDSFT+RAEVKGVYQFCFSNEFSTFSHKTVYFDFQV
Sbjct: 61 GHYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVKGVYQFCFSNEFSTFSHKTVYFDFQV 120
Query: 482 GDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVS 661
GDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDL+SRVS
Sbjct: 121 GDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVS 180
Query: 662 YWSVGETIALFVVSFGQVLLLKSFFTEKRPMGRAVHS 772
YWSVGETIALFVVSF QVLLLKSFFTEKRP+ RAVHS
Sbjct: 181 YWSVGETIALFVVSFSQVLLLKSFFTEKRPISRAVHS 217
>ref|NP_861974.1| transmembrane emp24 domain-containing protein 7 precursor [Homo
sapiens].
Length = 224
Score = 283 bits (723), Expect = 2e-76
Identities = 144/227 (63%), Positives = 173/227 (76%), Gaps = 3/227 (1%)
Frame = +2
Query: 77 PGPAR--AAVHGDWAGSIMGSVTPRSASTXXXXXXXQVERPRGA-ELTFELPDNAKQCFH 247
PG A+ AAV G W ++ + V P GA E+TFELPDNAKQCF+
Sbjct: 4 PGSAQRWAAVAGRWGCRLLALLL-------------LVPGPGGASEITFELPDNAKQCFY 50
Query: 248 EDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCF 427
ED+ QG K +L++QVITGGHYDVDC +EDP G +Y+E KKQYDSFT A G Y+FCF
Sbjct: 51 EDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF 110
Query: 428 SNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYR 607
SNEFSTF+HKTVYFDFQVG++PP+ P NRV+ALTQMESACV+IHEALK+VID QTH+R
Sbjct: 111 SNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQMESACVSIHEALKSVIDYQTHFR 169
Query: 608 LREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
LREAQ R+RAEDL++RV+YWSVGE + L VVS GQV LLKSFF++KR
Sbjct: 170 LREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKR 216
>ref|NP_001157940.1| TRAM adaptor with GOLD domain isoform 1 [Homo sapiens].
Length = 404
Score = 247 bits (631), Expect = 1e-65
Identities = 126/205 (61%), Positives = 153/205 (74%), Gaps = 3/205 (1%)
Frame = +2
Query: 77 PGPAR--AAVHGDWAGSIMGSVTPRSASTXXXXXXXQVERPRGA-ELTFELPDNAKQCFH 247
PG A+ AAV G W ++ + V P GA E+TFELPDNAKQCF+
Sbjct: 4 PGSAQRWAAVAGRWGCRLLALLL-------------LVPGPGGASEITFELPDNAKQCFY 50
Query: 248 EDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCF 427
ED+ QG K +L++QVITGGHYDVDC +EDP G +Y+E KKQYDSFT A G Y+FCF
Sbjct: 51 EDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF 110
Query: 428 SNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYR 607
SNEFSTF+HKTVYFDFQVG++PP+ P NRV+ALTQMESACV+IHEALK+VID QTH+R
Sbjct: 111 SNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQMESACVSIHEALKSVIDYQTHFR 169
Query: 608 LREAQDRARAEDLHSRVSYWSVGET 682
LREAQ R+RAEDL++RV+YW +T
Sbjct: 170 LREAQGRSRAEDLNTRVAYWHSVDT 194
>ref|NP_001157941.1| TRAM adaptor with GOLD domain isoform 2 [Homo sapiens].
Length = 188
Score = 243 bits (619), Expect = 3e-64
Identities = 124/199 (62%), Positives = 150/199 (75%), Gaps = 3/199 (1%)
Frame = +2
Query: 77 PGPAR--AAVHGDWAGSIMGSVTPRSASTXXXXXXXQVERPRGA-ELTFELPDNAKQCFH 247
PG A+ AAV G W ++ + V P GA E+TFELPDNAKQCF+
Sbjct: 4 PGSAQRWAAVAGRWGCRLLALLL-------------LVPGPGGASEITFELPDNAKQCFY 50
Query: 248 EDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVKGVYQFCF 427
ED+ QG K +L++QVITGGHYDVDC +EDP G +Y+E KKQYDSFT A G Y+FCF
Sbjct: 51 EDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCF 110
Query: 428 SNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVIDSQTHYR 607
SNEFSTF+HKTVYFDFQVG++PP+ P NRV+ALTQMESACV+IHEALK+VID QTH+R
Sbjct: 111 SNEFSTFTHKTVYFDFQVGEDPPLFPS-ENRVSALTQMESACVSIHEALKSVIDYQTHFR 169
Query: 608 LREAQDRARAEDLHSRVSY 664
LREAQ R+RAEDL++RV+Y
Sbjct: 170 LREAQGRSRAEDLNTRVAY 188
>ref|NP_057124.3| transmembrane emp24 domain-containing protein 5 isoform 1 precursor
[Homo sapiens].
Length = 229
Score = 101 bits (251), Expect = 1e-21
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 10/193 (5%)
Frame = +2
Query: 200 AELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYD 379
++ TF LP K+CF++ + ++YQV+ G D+D ++ P G T+ E +K
Sbjct: 34 SDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDG 93
Query: 380 SFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDF---QVGDEPPILPDMGNRVTALTQMESA 550
T EV G Y FCF N FST S K ++F+ +G++ D +T ++
Sbjct: 94 VHTVETEV-GDYMFCFDNTFSTISEKVIFFELILDNMGEQAQEQEDWKKYITGTDILDMK 152
Query: 551 CVTIHEALKTVIDS-------QTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFG 709
I E++ ++ QT R EA+DR E RV++WS+ + + VVS
Sbjct: 153 LEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAI 212
Query: 710 QVLLLKSFFTEKR 748
QV +LKS F +KR
Sbjct: 213 QVYMLKSLFEDKR 225
>ref|NP_006806.1| transmembrane emp24 domain-containing protein 2 precursor [Homo
sapiens].
Length = 201
Score = 97.8 bits (242), Expect = 1e-20
Identities = 57/174 (32%), Positives = 86/174 (49%)
Frame = +2
Query: 227 NAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDSFTHRAEVK 406
+A++CF E V G K L ++V GG D+D + P IY+ ++ +T A +
Sbjct: 28 HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
Query: 407 GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 586
G Y+FCFSN ST + K V F +G E P DM ++E + A+ V
Sbjct: 88 GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
Query: 587 DSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQVLLLKSFFTEKR 748
Q + +RE RA ++ +SRV WS E + L ++ GQ+ LK FF +R
Sbjct: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
>ref|NP_006849.1| transmembrane emp24 domain-containing protein 1 precursor [Homo
sapiens].
Length = 227
Score = 95.1 bits (235), Expect = 1e-19
Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 9/193 (4%)
Frame = +2
Query: 203 ELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYDS 382
E TF LP KQCF++ +YQVI G DVD +E P G + E++K
Sbjct: 33 EFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGV 92
Query: 383 FTHRAEVKGVYQFCFSNEFSTFSHKTVYFD--FQVGDEPPILPDMGNRVTALTQMESACV 556
T G Y+ CF N FST S K V+F+ F + + V ++
Sbjct: 93 HTVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLDVKME 152
Query: 557 TIHEALKTV-------IDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFVVSFGQV 715
I E+++T+ I T R EA+DR E RV++WS L +V+ QV
Sbjct: 153 DIKESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQV 212
Query: 716 LLLKSFFTEKRPM 754
LK FF +KRP+
Sbjct: 213 CTLKRFFQDKRPV 225
>ref|NP_001161302.1| transmembrane emp24 domain-containing protein 5 isoform 2 precursor
[Homo sapiens].
Length = 193
Score = 71.2 bits (173), Expect = 1e-12
Identities = 37/107 (34%), Positives = 56/107 (52%)
Frame = +2
Query: 200 AELTFELPDNAKQCFHEDVEQGVKFSLDYQVITGGHYDVDCYVEDPLGNTIYRETKKQYD 379
++ TF LP K+CF++ + ++YQV+ G D+D ++ P G T+ E +K
Sbjct: 34 SDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDG 93
Query: 380 SFTHRAEVKGVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNR 520
T EV G Y FCF N FST S K ++F+ IL +MG +
Sbjct: 94 VHTVETEV-GDYMFCFDNTFSTISEKVIFFEL-------ILDNMGEQ 132
>ref|NP_059980.2| transmembrane emp24 domain-containing protein 9 precursor [Homo
sapiens].
Length = 235
Score = 63.2 bits (152), Expect = 4e-10
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 17/202 (8%)
Frame = +2
Query: 194 RGAELTFELPDNAKQCFHEDVEQGV------------KFSLDYQVITGGHYDVDCYVEDP 337
RG+ L F + + K+CF E++ K +YQ T G + V+DP
Sbjct: 34 RGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPG-LGMFVEVKDP 92
Query: 338 LGNTIYRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFSHKT--VYFDFQVGDEPPIL 502
I FT + G +Q C S +FS F+ V+ D QVG+
Sbjct: 93 EDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDIQVGEHANDY 152
Query: 503 PDMGNRVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGET 682
++ + L++++ + E ++ + Q + R RE + R +E + RV +WS+ +T
Sbjct: 153 AEIAAK-DKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQT 211
Query: 683 IALFVVSFGQVLLLKSFFTEKR 748
+ L + Q+ LKSFF K+
Sbjct: 212 LILVAIGVWQMRHLKSFFEAKK 233
>ref|NP_872353.2| transmembrane emp24 domain-containing protein 4 precursor [Homo
sapiens].
Length = 227
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 16/197 (8%)
Frame = +2
Query: 206 LTFELPDNAKQCFHEDVEQGVKFSLDY---------QVITGGHYDVDCYVE--DPLGNTI 352
L F + + K+CF E++ +Y +V + +VE DP G +
Sbjct: 30 LYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPDGKVV 89
Query: 353 YRETKKQYDSFTHRAEVKGVYQFCF---SNEFSTFS--HKTVYFDFQVGDEPPILPDMGN 517
FT + G +Q C S + F+ V+ D QVG+ P++
Sbjct: 90 LSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEHANNYPEIAA 149
Query: 518 RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLHSRVSYWSVGETIALFV 697
+ LT+++ + + ++ + Q + R RE + R +E + RV +WS+ +T+ L +
Sbjct: 150 K-DKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILIL 208
Query: 698 VSFGQVLLLKSFFTEKR 748
Q+ LKSFF K+
Sbjct: 209 TGIWQMRHLKSFFEAKK 225
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,654,886
Number of extensions: 1608491
Number of successful extensions: 7409
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7376
Number of HSP's successfully gapped: 11
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007919
(1066 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1049 0.0
gb|GL894254.2| Sus scrofa unplaced genomic scaffold ChrUScaf2138 498 e-138
Sscrofa_Chr02 68 1e-08
>Sscrofa_Chr07
|| Length = 134764511
Score = 1049 bits (529), Expect = 0.0
Identities = 532/533 (99%)
Strand = Plus / Minus
Query: 534 cccagatggagtccgcctgcgtgaccatccacgaagctctgaagaccgtgattgactccc 593
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975981 cccagatggagtccgcctgtgtgaccatccacgaagctctgaagaccgtgattgactccc 53975922
Query: 594 agacgcattaccggctccgggaggcccaggaccgggcccgggccgaagacctgcacagcc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975921 agacgcattaccggctccgggaggcccaggaccgggcccgggccgaagacctgcacagcc 53975862
Query: 654 gcgtctcttactggtctgttggcgagacgatcgccctgttcgtggtcagcttcggccagg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975861 gcgtctcttactggtctgttggcgagacgatcgccctgttcgtggtcagcttcggccagg 53975802
Query: 714 tgctgctgctgaagagcttcttcacagaaaaacgacccatgggcagggcggtccactcct 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975801 tgctgctgctgaagagcttcttcacagaaaaacgacccatgggcagggcggtccactcct 53975742
Query: 774 agtcgggtgctctgctcctgggcccctgccatcctggcgtggagcagctccctccatcac 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975741 agtcgggtgctctgctcctgggcccctgccatcctggcgtggagcagctccctccatcac 53975682
Query: 834 aggctcctgtgggccgagggtgcacccctgggtggaggcagagctgcctggcaaagagca 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975681 aggctcctgtgggccgagggtgcacccctgggtggaggcagagctgcctggcaaagagca 53975622
Query: 894 cgggctgatgtgctctcaccccgtcctctgttcggatgcctagtccttgtttgccagcct 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975621 cgggctgatgtgctctcaccccgtcctctgttcggatgcctagtccttgtttgccagcct 53975562
Query: 954 ccacatctcatggatcccagtcatcggagggcattgagcggccttccctgtgtaaccgtg 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975561 ccacatctcatggatcccagtcatcggagggcattgagcggccttccctgtgtaaccgtg 53975502
Query: 1014 cacgaagaaggggtgcagttaggctgggattggtcacatgggggtgcaggaag 1066
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53975501 cacgaagaaggggtgcagttaggctgggattggtcacatgggggtgcaggaag 53975449
Score = 561 bits (283), Expect = e-157
Identities = 289/291 (99%)
Strand = Plus / Plus
Query: 1 tgcgcactgggccgcccgcccgccctcccggaagcgcagtgccgggctcccgccacgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53970258 tgcgcactgggccgcccgcccgccctcccggaagcgcagtgccgggctcccgccacgtct 53970317
Query: 61 gccgctgcactttctcccaggtcccgccagagccgcggtgcacggggactgggcagggag 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 53970318 gccgctgcactttctcccaggtcccgccagagccgcggcgcacggggactgggcagggag 53970377
Query: 121 catcatgggcagcgtgacaccgcgctccgcctccacactgcttctgctgcttttgctcca 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 53970378 catcatgggcagcgtgacaccgcgctccgcctccgcactgcttctgctgcttttgctcca 53970437
Query: 181 ggtagagcggccacggggtgcggagctcaccttcgagctgcctgacaacgccaagcagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53970438 ggtagagcggccacggggtgcggagctcaccttcgagctgcctgacaacgccaagcagtg 53970497
Query: 241 tttccacgaggatgtggagcagggcgtgaagttctccctggattaccaggt 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53970498 tttccacgaggatgtggagcagggcgtgaagttctccctggattaccaggt 53970548
Score = 492 bits (248), Expect = e-136
Identities = 251/252 (99%)
Strand = Plus / Plus
Query: 287 caggtcatcactggaggccactacgatgtggactgctatgtggaagaccccctggggaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53972263 caggtcatcactggaggccactacgatgtggactgctatgtggaagaccccctggggaac 53972322
Query: 347 accatctacagggaaaccaagaagcagtatgacagctttacgcaccgggctgaggtcaag 406
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 53972323 accatctacagggaaaccaagaagcagtatgacagcttcacgcaccgggctgaggtcaag 53972382
Query: 407 ggcgtctatcagttttgcttcagtaatgagttttccaccttctctcataagaccgtctac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53972383 ggcgtctatcagttttgcttcagtaatgagttttccaccttctctcataagaccgtctac 53972442
Query: 467 tttgattttcaagtgggcgacgagcctcctattctcccagacatggggaacagggtcaca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53972443 tttgattttcaagtgggcgacgagcctcctattctcccagacatggggaacagggtcaca 53972502
Query: 527 gctctcacccag 538
||||||||||||
Sbjct: 53972503 gctctcacccag 53972514
>gb|GL894254.2| Sus scrofa unplaced genomic scaffold ChrUScaf2138
Length = 238012
Score = 498 bits (251), Expect = e-138
Identities = 251/251 (100%)
Strand = Plus / Minus
Query: 816 agcagctccctccatcacaggctcctgtgggccgagggtgcacccctgggtggaggcaga 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144522 agcagctccctccatcacaggctcctgtgggccgagggtgcacccctgggtggaggcaga 144463
Query: 876 gctgcctggcaaagagcacgggctgatgtgctctcaccccgtcctctgttcggatgccta 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144462 gctgcctggcaaagagcacgggctgatgtgctctcaccccgtcctctgttcggatgccta 144403
Query: 936 gtccttgtttgccagcctccacatctcatggatcccagtcatcggagggcattgagcggc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144402 gtccttgtttgccagcctccacatctcatggatcccagtcatcggagggcattgagcggc 144343
Query: 996 cttccctgtgtaaccgtgcacgaagaaggggtgcagttaggctgggattggtcacatggg 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144342 cttccctgtgtaaccgtgcacgaagaaggggtgcagttaggctgggattggtcacatggg 144283
Query: 1056 ggtgcaggaag 1066
|||||||||||
Sbjct: 144282 ggtgcaggaag 144272
Score = 337 bits (170), Expect = 7e-90
Identities = 173/174 (99%)
Strand = Plus / Minus
Query: 287 caggtcatcactggaggccactacgatgtggactgctatgtggaagaccccctggggaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150938 caggtcatcactggaggccactacgatgtggactgctatgtggaagaccccctggggaac 150879
Query: 347 accatctacagggaaaccaagaagcagtatgacagctttacgcaccgggctgaggtcaag 406
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 150878 accatctacagggaaaccaagaagcagtatgacagcttcacgcaccgggctgaggtcaag 150819
Query: 407 ggcgtctatcagttttgcttcagtaatgagttttccaccttctctcataagacc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150818 ggcgtctatcagttttgcttcagtaatgagttttccaccttctctcataagacc 150765
Score = 278 bits (140), Expect = 6e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 649 cagccgcgtctcttactggtctgttggcgagacgatcgccctgttcgtggtcagcttcgg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144762 cagccgcgtctcttactggtctgttggcgagacgatcgccctgttcgtggtcagcttcgg 144703
Query: 709 ccaggtgctgctgctgaagagcttcttcacagaaaaacgacccatgggcagggcggtcca 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144702 ccaggtgctgctgctgaagagcttcttcacagaaaaacgacccatgggcagggcggtcca 144643
Query: 769 ctcctagtcgggtgctctgc 788
||||||||||||||||||||
Sbjct: 144642 ctcctagtcgggtgctctgc 144623
Score = 256 bits (129), Expect = 2e-65
Identities = 135/137 (98%)
Strand = Plus / Minus
Query: 41 gccgggctcccgccacgtctgccgctgcactttctcccaggtcccgccagagccgcggtg 100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 153085 gccgggctcccgccacgtctgccgctgcactttctcccaggtcccgccagagccgcggcg 153026
Query: 101 cacggggactgggcagggagcatcatgggcagcgtgacaccgcgctccgcctccacactg 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 153025 cacggggactgggcagggagcatcatgggcagcgtgacaccgcgctccgcctccgcactg 152966
Query: 161 cttctgctgcttttgct 177
|||||||||||||||||
Sbjct: 152965 cttctgctgcttttgct 152949
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 197 ggtgcggagctcaccttcgagctgcctgacaacgccaagcagtgtttccacgaggatgtg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152848 ggtgcggagctcaccttcgagctgcctgacaacgccaagcagtgtttccacgaggatgtg 152789
Query: 257 gagcagggcgtgaagttctccctggattaccaggt 291
|||||||||||||||||||||||||||||||||||
Sbjct: 152788 gagcagggcgtgaagttctccctggattaccaggt 152754
Score = 135 bits (68), Expect = 5e-29
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 534 cccagatggagtccgcctgcgtgaccatccacgaagctctgaagaccgtgattgactccc 593
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 144944 cccagatggagtccgcctgtgtgaccatccacgaagctctgaagaccgtgattgactccc 144885
Query: 594 agacgcattacc 605
||||||||||||
Sbjct: 144884 agacgcattacc 144873
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 493 tcctattctcccagacatggggaacagggtcacagctctcacccag 538
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150664 tcctattctcccagacatggggaacagggtcacagctctcacccag 150619
>Sscrofa_Chr02
|| Length = 162569375
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 207 tcaccttcgagctgcctgacaacgccaagcagtgtttccacgagga 252
|||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 124691429 tcaccttcgagctgcccgacaatgccaagcagtgtttctacgagga 124691384
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,274,119
Number of extensions: 255
Number of successful extensions: 255
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 11
Length of query: 1066
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1045
Effective length of database: 2,808,413,156
Effective search space: 2934791748020
Effective search space used: 2934791748020
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)