Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007921
(1312 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851934.1| solute carrier family 35 member B1 [Bos taurus]. 605 e-173
Alignment gi|NP_001070433.1| adenosine 3'-phospho 5'-phosphosulfate trans... 122 9e-28
Alignment gi|XP_002697641.1| PREDICTED: solute carrier family 35, member ... 101 1e-21
Alignment gi|XP_606010.4| PREDICTED: solute carrier family 35, member B3 ... 101 1e-21
>ref|NP_851934.1| solute carrier family 35 member B1 [Bos taurus].
Length = 355
Score = 605 bits (1559), Expect = e-173
Identities = 310/352 (88%), Positives = 313/352 (88%)
Frame = +1
Query: 256 MRALSPVGDVRLDXXXXXXXXXXXXXXXXXXXRLMAASSSLVPDRLRLPLCFLGVFVCYF 435
MR LSPVGDVRLD RLMAASSSLVPDRLRLPLCFLGVFVCYF
Sbjct: 1 MRPLSPVGDVRLDLSPPPLPAVSGSPVGSSG-RLMAASSSLVPDRLRLPLCFLGVFVCYF 59
Query: 436 YYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRTRSWL 615
YYGILQEKITRGKYGEGAKQETFTFALTLVFIQCV+NAVFAKILIQFFDTARVDRTRSWL
Sbjct: 60 YYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVVNAVFAKILIQFFDTARVDRTRSWL 119
Query: 616 YAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKYLCVLL 795
YAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLL+KKYPMAKYLCVLL
Sbjct: 120 YAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPMAKYLCVLL 179
Query: 796 IVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRAHYQTGSNHMML 975
IVAGVALFMYKPKKVVGIEEHT+GYGE VSQDHMRAHYQTGSNHMML
Sbjct: 180 IVAGVALFMYKPKKVVGIEEHTIGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMML 239
Query: 976 NINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTVVYFGP 1155
NINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTVVYFGP
Sbjct: 240 NINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTVVYFGP 299
Query: 1156 LNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGPDASFGKRTK 1311
L CSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLG DA FGK K
Sbjct: 300 LTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDAKFGKGAK 351
>ref|NP_001070433.1| adenosine 3'-phospho 5'-phosphosulfate transporter 1 [Bos taurus].
Length = 433
Score = 122 bits (305), Expect = 9e-28
Identities = 95/311 (30%), Positives = 145/311 (46%), Gaps = 2/311 (0%)
Frame = +1
Query: 352 RLMAASSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQ--ETFTFALTLV 525
R A +S L+L C G+ V Y +G+LQE++ YG A E F+ + LV
Sbjct: 98 RAEPAETSPTWQALKLLFCASGLQVSYLTWGVLQERVMTRSYGATATSPGERFSDSQFLV 157
Query: 526 FIQCVINAVFAKILIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLG 705
+ ++ + A + R + Y+ S+S + + AL+FV++PTQVL
Sbjct: 158 LMNRILALMVAGVYCILCKQPR-HGAPMYRYSFASLSNVLSSWCQYEALKFVSFPTQVLA 216
Query: 706 KSCKPIPVMLLGVTLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXX 885
K+ K IPVML+G + R+ Y +YL LI GV++F+ T G
Sbjct: 217 KASKVIPVMLMGKLVSRRSYEHWEYLTAGLISIGVSMFLLSSGPEPHSSPATTLSGLILL 276
Query: 886 XXXXXXXXXXXVSQDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERY 1065
QD + A Y+ S MM +NL+S L +L G L E + F R+
Sbjct: 277 AGYIAFDSFTSNWQDALFA-YKMSSVQMMFGVNLFSCLFTVGSLLEQGALLEGIRFMGRH 335
Query: 1066 PTIVYNILLFGLTSALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQ 1245
+ LL + SA GQ FIF T+ FG +II T R+ F IL S +L+ + ++ +
Sbjct: 336 SEFAAHTLLLSICSACGQLFIFYTIGQFGAAVFTIIMTLRQAFAILLSCLLYGHTVTVVG 395
Query: 1246 WVGTVLVFLGL 1278
+G +VF L
Sbjct: 396 GLGVAVVFAAL 406
>ref|XP_002697641.1| PREDICTED: solute carrier family 35, member B3 [Bos taurus].
Length = 430
Score = 101 bits (252), Expect = 1e-21
Identities = 87/293 (29%), Positives = 125/293 (42%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q ++F I +Q
Sbjct: 112 ICVAGVFVFYLIYGYLQELIFSV---EGFKP----YGWYLTLVQFAFYSIFGLIELQLIQ 164
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 165 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 223
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A L + G+ F V + V + M+
Sbjct: 224 YNVADVSAALCMSLGLIWFTLADSTVA--PNFNLTGVVLISLALCADAVIGNVQEKAMKL 281
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 282 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCSKDPIRTYGYAFLFSLTGYFGI 340
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S I FA P + LV LG+
Sbjct: 341 SFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGFLVVLGI 393
>ref|XP_606010.4| PREDICTED: solute carrier family 35, member B3 [Bos taurus].
Length = 430
Score = 101 bits (252), Expect = 1e-21
Identities = 87/293 (29%), Positives = 125/293 (42%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q ++F I +Q
Sbjct: 112 ICVAGVFVFYLIYGYLQELIFSV---EGFKP----YGWYLTLVQFAFYSIFGLIELQLIQ 164
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 165 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 223
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A L + G+ F V + V + M+
Sbjct: 224 YNVADVSAALCMSLGLIWFTLADSTVA--PNFNLTGVVLISLALCADAVIGNVQEKAMKL 281
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 282 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCSKDPIRTYGYAFLFSLTGYFGI 340
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S I FA P + LV LG+
Sbjct: 341 SFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGFLVVLGI 393
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,953,463
Number of extensions: 1503750
Number of successful extensions: 5487
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5469
Number of HSP's successfully gapped: 4
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007921
(1312 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865176.1| PREDICTED: similar to solute carrier family 35,... 598 e-171
Alignment gi|XP_865154.1| PREDICTED: similar to solute carrier family 35,... 598 e-171
Alignment gi|XP_537671.2| PREDICTED: similar to solute carrier family 35,... 598 e-171
Alignment gi|XP_865134.1| PREDICTED: similar to solute carrier family 35,... 393 e-109
Alignment gi|XP_865113.1| PREDICTED: similar to solute carrier family 35,... 152 2e-58
Alignment gi|XP_865078.1| PREDICTED: similar to solute carrier family 35,... 152 1e-49
Alignment gi|NP_001120971.1| adenosine 3'-phospho 5'-phosphosulfate trans... 123 4e-28
Alignment gi|XP_848869.1| PREDICTED: similar to solute carrier family 35,... 100 3e-21
Alignment gi|XP_857280.1| PREDICTED: similar to solute carrier family 35,... 100 3e-21
Alignment gi|XP_857238.1| PREDICTED: similar to solute carrier family 35,... 100 3e-21
>ref|XP_865176.1| PREDICTED: similar to solute carrier family 35, member B1 isoform 6
[Canis familiaris].
Length = 360
Score = 598 bits (1541), Expect = e-171
Identities = 307/356 (86%), Positives = 312/356 (87%), Gaps = 4/356 (1%)
Frame = +1
Query: 256 MRALSPVGDVRLDXXXXXXXXXXXXXXXXXXX----RLMAASSSLVPDRLRLPLCFLGVF 423
MR LSPVGDVRL+ RLMAASSSLVPDRLRLPLCFLGVF
Sbjct: 1 MRPLSPVGDVRLELSPPPPLPLPLPAVSGSPVGSSGRLMAASSSLVPDRLRLPLCFLGVF 60
Query: 424 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT 603
VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT
Sbjct: 61 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT 120
Query: 604 RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKYL 783
RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLL+KKYPMAKYL
Sbjct: 121 RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPMAKYL 180
Query: 784 CVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRAHYQTGSN 963
CVLLIVAGVALFMYKPKKVVG+EEHTVGYGE VSQDHMRAHYQTGSN
Sbjct: 181 CVLLIVAGVALFMYKPKKVVGMEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSN 240
Query: 964 HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTVV 1143
HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYP I+YNILLFGLTSALGQSFIFMTVV
Sbjct: 241 HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPNIIYNILLFGLTSALGQSFIFMTVV 300
Query: 1144 YFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGPDASFGKRTK 1311
YFGPL CSIITTTRKFFTILASVILFANPISP+QWVGTVLVFLGLG DA FGK K
Sbjct: 301 YFGPLTCSIITTTRKFFTILASVILFANPISPLQWVGTVLVFLGLGLDAKFGKGAK 356
>ref|XP_865154.1| PREDICTED: similar to solute carrier family 35, member B1 isoform 5
[Canis familiaris].
Length = 360
Score = 598 bits (1541), Expect = e-171
Identities = 307/356 (86%), Positives = 312/356 (87%), Gaps = 4/356 (1%)
Frame = +1
Query: 256 MRALSPVGDVRLDXXXXXXXXXXXXXXXXXXX----RLMAASSSLVPDRLRLPLCFLGVF 423
MR LSPVGDVRL+ RLMAASSSLVPDRLRLPLCFLGVF
Sbjct: 1 MRPLSPVGDVRLELSPPPPLPLPLPAVSGSPVGSSGRLMAASSSLVPDRLRLPLCFLGVF 60
Query: 424 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT 603
VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT
Sbjct: 61 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT 120
Query: 604 RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKYL 783
RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLL+KKYPMAKYL
Sbjct: 121 RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPMAKYL 180
Query: 784 CVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRAHYQTGSN 963
CVLLIVAGVALFMYKPKKVVG+EEHTVGYGE VSQDHMRAHYQTGSN
Sbjct: 181 CVLLIVAGVALFMYKPKKVVGMEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSN 240
Query: 964 HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTVV 1143
HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYP I+YNILLFGLTSALGQSFIFMTVV
Sbjct: 241 HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPNIIYNILLFGLTSALGQSFIFMTVV 300
Query: 1144 YFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGPDASFGKRTK 1311
YFGPL CSIITTTRKFFTILASVILFANPISP+QWVGTVLVFLGLG DA FGK K
Sbjct: 301 YFGPLTCSIITTTRKFFTILASVILFANPISPLQWVGTVLVFLGLGLDAKFGKGAK 356
>ref|XP_537671.2| PREDICTED: similar to solute carrier family 35, member B1 isoform 1
[Canis familiaris].
Length = 360
Score = 598 bits (1541), Expect = e-171
Identities = 307/356 (86%), Positives = 312/356 (87%), Gaps = 4/356 (1%)
Frame = +1
Query: 256 MRALSPVGDVRLDXXXXXXXXXXXXXXXXXXX----RLMAASSSLVPDRLRLPLCFLGVF 423
MR LSPVGDVRL+ RLMAASSSLVPDRLRLPLCFLGVF
Sbjct: 1 MRPLSPVGDVRLELSPPPPLPLPLPAVSGSPVGSSGRLMAASSSLVPDRLRLPLCFLGVF 60
Query: 424 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT 603
VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT
Sbjct: 61 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRT 120
Query: 604 RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKYL 783
RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLL+KKYPMAKYL
Sbjct: 121 RSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPMAKYL 180
Query: 784 CVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRAHYQTGSN 963
CVLLIVAGVALFMYKPKKVVG+EEHTVGYGE VSQDHMRAHYQTGSN
Sbjct: 181 CVLLIVAGVALFMYKPKKVVGMEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSN 240
Query: 964 HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTVV 1143
HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYP I+YNILLFGLTSALGQSFIFMTVV
Sbjct: 241 HMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPNIIYNILLFGLTSALGQSFIFMTVV 300
Query: 1144 YFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGPDASFGKRTK 1311
YFGPL CSIITTTRKFFTILASVILFANPISP+QWVGTVLVFLGLG DA FGK K
Sbjct: 301 YFGPLTCSIITTTRKFFTILASVILFANPISPLQWVGTVLVFLGLGLDAKFGKGAK 356
>ref|XP_865134.1| PREDICTED: similar to solute carrier family 35, member B1 isoform 4
[Canis familiaris].
Length = 225
Score = 393 bits (1010), Expect = e-109
Identities = 197/221 (89%), Positives = 201/221 (90%)
Frame = +1
Query: 649 MVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKYLCVLLIVAGVALFMYK 828
MVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLL+KKYPMAKYLCVLLIVAGVALFMYK
Sbjct: 1 MVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPMAKYLCVLLIVAGVALFMYK 60
Query: 829 PKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRAHYQTGSNHMMLNINLWSTLLLG 1008
PKKVVG+EEHTVGYGE VSQDHMRAHYQTGSNHMMLNINLWSTLLLG
Sbjct: 61 PKKVVGMEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTLLLG 120
Query: 1009 AGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTVVYFGPLNCSIITTTRK 1188
AGILFTGELWEFLSFAERYP I+YNILLFGLTSALGQSFIFMTVVYFGPL CSIITTTRK
Sbjct: 121 AGILFTGELWEFLSFAERYPNIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRK 180
Query: 1189 FFTILASVILFANPISPMQWVGTVLVFLGLGPDASFGKRTK 1311
FFTILASVILFANPISP+QWVGTVLVFLGLG DA FGK K
Sbjct: 181 FFTILASVILFANPISPLQWVGTVLVFLGLGLDAKFGKGAK 221
>ref|XP_865113.1| PREDICTED: similar to solute carrier family 35, member B1 isoform 3
[Canis familiaris].
Length = 161
Score = 152 bits (385), Expect(2) = 2e-58
Identities = 82/107 (76%), Positives = 83/107 (77%), Gaps = 4/107 (3%)
Frame = +1
Query: 256 MRALSPVGDVRLDXXXXXXXXXXXXXXXXXXX----RLMAASSSLVPDRLRLPLCFLGVF 423
MR LSPVGDVRL+ RLMAASSSLVPDRLRLPLCFLGVF
Sbjct: 1 MRPLSPVGDVRLELSPPPPLPLPLPAVSGSPVGSSGRLMAASSSLVPDRLRLPLCFLGVF 60
Query: 424 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKI 564
VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKI
Sbjct: 61 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKI 107
Score = 93.2 bits (230), Expect(2) = 2e-58
Identities = 46/52 (88%), Positives = 46/52 (88%)
Frame = +2
Query: 593 WIGLGAGSMLLVLSPIWAPWSPATQHYSLSTTQLRSLVNPASQSQSCSLE*P 748
WI LGAGSML VLSPIW PWS ATQHYSLST QLRSLVNPASQSQSCSLE P
Sbjct: 109 WIVLGAGSMLPVLSPIWVPWSLATQHYSLSTIQLRSLVNPASQSQSCSLELP 160
>ref|XP_865078.1| PREDICTED: similar to solute carrier family 35, member B1 isoform 2
[Canis familiaris].
Length = 143
Score = 152 bits (385), Expect(2) = 1e-49
Identities = 82/107 (76%), Positives = 83/107 (77%), Gaps = 4/107 (3%)
Frame = +1
Query: 256 MRALSPVGDVRLDXXXXXXXXXXXXXXXXXXX----RLMAASSSLVPDRLRLPLCFLGVF 423
MR LSPVGDVRL+ RLMAASSSLVPDRLRLPLCFLGVF
Sbjct: 1 MRPLSPVGDVRLELSPPPPLPLPLPAVSGSPVGSSGRLMAASSSLVPDRLRLPLCFLGVF 60
Query: 424 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKI 564
VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKI
Sbjct: 61 VCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKI 107
Score = 63.9 bits (154), Expect(2) = 1e-49
Identities = 30/35 (85%), Positives = 30/35 (85%)
Frame = +2
Query: 593 WIGLGAGSMLLVLSPIWAPWSPATQHYSLSTTQLR 697
WI LGAGSML VLSPIW PWS ATQHYSLST QLR
Sbjct: 109 WIVLGAGSMLPVLSPIWVPWSLATQHYSLSTIQLR 143
>ref|NP_001120971.1| adenosine 3'-phospho 5'-phosphosulfate transporter 1 [Canis lupus
familiaris].
Length = 432
Score = 123 bits (308), Expect = 4e-28
Identities = 94/298 (31%), Positives = 140/298 (46%), Gaps = 2/298 (0%)
Frame = +1
Query: 391 LRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQ--ETFTFALTLVFIQCVINAVFAKI 564
L+L C G+ V Y +G+LQE++ YG A E FT + LV + V+ + A +
Sbjct: 110 LKLLFCAAGLQVSYLTWGVLQERVMTRSYGATATSPGERFTDSQFLVLMNRVLALIVAGL 169
Query: 565 LIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGV 744
R + Y+ S+S + + AL+FV++PTQVL K+ K IPVML+G
Sbjct: 170 YCVLCKQPR-HGAPMYRYSFASLSNVLSSWCQYEALKFVSFPTQVLAKASKVIPVMLMGK 228
Query: 745 TLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVS 924
+ R+ Y +YL LI GV++F+ T G
Sbjct: 229 LVSRRSYEHWEYLTAGLISIGVSMFLLSSGPEPRSSPATTLSGLILLAGYIAFDSFTSNW 288
Query: 925 QDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLT 1104
QD + A Y+ S MM +NL+S L +L G L E F R+ + LL +
Sbjct: 289 QDALFA-YKMSSVQMMFGVNLFSCLFTVGSLLEQGALLEGTRFMGRHSEFAAHALLLSIC 347
Query: 1105 SALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SA GQ FIF T+ FG +II T R+ F IL S +L+ + ++ + +G +VF L
Sbjct: 348 SACGQLFIFYTIGQFGAAVFTIIMTLRQAFAILLSCLLYGHTVTVVGGLGVAVVFAAL 405
>ref|XP_848869.1| PREDICTED: similar to solute carrier family 35, member B3 isoform 1
[Canis familiaris].
Length = 424
Score = 100 bits (249), Expect = 3e-21
Identities = 84/293 (28%), Positives = 127/293 (43%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K ++ L +Q ++F I +Q
Sbjct: 106 ICVAGVFVFYLIYGYLQELIFSM---EGFK----SYGWYLTLVQFAFYSIFGLIELQLIQ 158
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 159 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 217
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + + V + M+
Sbjct: 218 YNIADVSAAVCMSLGLIWFTLADSTIA--PNFNLTGVILISLALCADAVIGNVQEKAMKL 275
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 276 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCSKNPIQTYGYAFLFSLTGYFGI 334
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S + FA P + +LV LG+
Sbjct: 335 SFVLALIKIFGALLAVTVTTGRKAMTIVLSFMFFAKPFTFQYVWSGLLVVLGI 387
>ref|XP_857280.1| PREDICTED: similar to solute carrier family 35, member B3 isoform 3
[Canis familiaris].
Length = 369
Score = 100 bits (249), Expect = 3e-21
Identities = 84/293 (28%), Positives = 127/293 (43%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K ++ L +Q ++F I +Q
Sbjct: 51 ICVAGVFVFYLIYGYLQELIFSM---EGFK----SYGWYLTLVQFAFYSIFGLIELQLIQ 103
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 104 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 162
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + + V + M+
Sbjct: 163 YNIADVSAAVCMSLGLIWFTLADSTIA--PNFNLTGVILISLALCADAVIGNVQEKAMKL 220
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 221 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCSKNPIQTYGYAFLFSLTGYFGI 279
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S + FA P + +LV LG+
Sbjct: 280 SFVLALIKIFGALLAVTVTTGRKAMTIVLSFMFFAKPFTFQYVWSGLLVVLGI 332
>ref|XP_857238.1| PREDICTED: similar to solute carrier family 35, member B3 isoform 2
[Canis familiaris].
Length = 369
Score = 100 bits (249), Expect = 3e-21
Identities = 84/293 (28%), Positives = 127/293 (43%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K ++ L +Q ++F I +Q
Sbjct: 51 ICVAGVFVFYLIYGYLQELIFSM---EGFK----SYGWYLTLVQFAFYSIFGLIELQLIQ 103
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 104 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 162
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + + V + M+
Sbjct: 163 YNIADVSAAVCMSLGLIWFTLADSTIA--PNFNLTGVILISLALCADAVIGNVQEKAMKL 220
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 221 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCSKNPIQTYGYAFLFSLTGYFGI 279
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S + FA P + +LV LG+
Sbjct: 280 SFVLALIKIFGALLAVTVTTGRKAMTIVLSFMFFAKPFTFQYVWSGLLVVLGI 332
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,159,033
Number of extensions: 1545995
Number of successful extensions: 5750
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5734
Number of HSP's successfully gapped: 15
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007921
(1312 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131610.2| PREDICTED: solute carrier family 35 member B... 554 e-158
Alignment gi|XP_003128465.1| PREDICTED: adenosine 3'-phospho 5'-phosphosu... 120 2e-27
Alignment gi|XP_003128464.1| PREDICTED: adenosine 3'-phospho 5'-phosphosu... 120 2e-27
Alignment gi|XP_001928842.2| PREDICTED: adenosine 3'-phospho 5'-phosphosu... 102 4e-22
>ref|XP_003131610.2| PREDICTED: solute carrier family 35 member B1-like, partial [Sus
scrofa].
Length = 301
Score = 554 bits (1427), Expect = e-158
Identities = 279/297 (93%), Positives = 279/297 (93%)
Frame = +1
Query: 421 FVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDR 600
FVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDR
Sbjct: 1 FVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDR 60
Query: 601 TRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKY 780
TRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKY
Sbjct: 61 TRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKKYPMAKY 120
Query: 781 LCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRAHYQTGS 960
LCVLLIVAGVALFMYKPKKVVGIEEHTVGYGE VSQDHMRAHYQTGS
Sbjct: 121 LCVLLIVAGVALFMYKPKKVVGIEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGS 180
Query: 961 NHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTV 1140
NHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTV
Sbjct: 181 NHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLTSALGQSFIFMTV 240
Query: 1141 VYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGPDASFGKRTK 1311
VYFGPL CSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLG DA FGK TK
Sbjct: 241 VYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDAKFGKGTK 297
>ref|XP_003128465.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 1
isoform 2 [Sus scrofa].
Length = 432
Score = 120 bits (300), Expect = 2e-27
Identities = 95/307 (30%), Positives = 142/307 (46%), Gaps = 2/307 (0%)
Frame = +1
Query: 364 ASSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQ--ETFTFALTLVFIQC 537
A +S L+L C G+ V Y +G+LQE++ YG A E F+ + LV +
Sbjct: 101 AETSPTWQALKLLFCASGLQVSYLTWGVLQERVMTRSYGATATSPGERFSDSQFLVLMNR 160
Query: 538 VINAVFAKILIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCK 717
V+ + A R + Y+ S+S + + AL+FV++PTQVL K+ K
Sbjct: 161 VLALIVAGFYCILCKQPR-HGAPMYRYSFASLSNVLSSWCQYEALKFVSFPTQVLAKASK 219
Query: 718 PIPVMLLGVTLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXX 897
IPVML+G + R+ Y +YL LI GV++F+ T G
Sbjct: 220 VIPVMLMGKLVSRRSYEHWEYLTAGLISIGVSMFLLSSGPEPHSSPATTLSGLILLAGYI 279
Query: 898 XXXXXXXVSQDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIV 1077
QD + A Y+ S MM +N +S L +L G L E + F R+
Sbjct: 280 AFDSFTSNWQDALFA-YKMSSVQMMFGVNFFSCLFTVGSLLEQGALLEGVRFMGRHSEFA 338
Query: 1078 YNILLFGLTSALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGT 1257
+ LL + SA GQ FIF T+ FG +II T R+ F IL S +L+ + I+ + +G
Sbjct: 339 AHTLLLSICSACGQLFIFYTIGQFGAAVFTIIMTLRQAFAILLSCLLYGHTITVVGGLGV 398
Query: 1258 VLVFLGL 1278
+VF L
Sbjct: 399 AVVFAAL 405
>ref|XP_003128464.1| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 1
isoform 1 [Sus scrofa].
Length = 432
Score = 120 bits (300), Expect = 2e-27
Identities = 95/307 (30%), Positives = 142/307 (46%), Gaps = 2/307 (0%)
Frame = +1
Query: 364 ASSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQ--ETFTFALTLVFIQC 537
A +S L+L C G+ V Y +G+LQE++ YG A E F+ + LV +
Sbjct: 101 AETSPTWQALKLLFCASGLQVSYLTWGVLQERVMTRSYGATATSPGERFSDSQFLVLMNR 160
Query: 538 VINAVFAKILIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCK 717
V+ + A R + Y+ S+S + + AL+FV++PTQVL K+ K
Sbjct: 161 VLALIVAGFYCILCKQPR-HGAPMYRYSFASLSNVLSSWCQYEALKFVSFPTQVLAKASK 219
Query: 718 PIPVMLLGVTLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXX 897
IPVML+G + R+ Y +YL LI GV++F+ T G
Sbjct: 220 VIPVMLMGKLVSRRSYEHWEYLTAGLISIGVSMFLLSSGPEPHSSPATTLSGLILLAGYI 279
Query: 898 XXXXXXXVSQDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIV 1077
QD + A Y+ S MM +N +S L +L G L E + F R+
Sbjct: 280 AFDSFTSNWQDALFA-YKMSSVQMMFGVNFFSCLFTVGSLLEQGALLEGVRFMGRHSEFA 338
Query: 1078 YNILLFGLTSALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGT 1257
+ LL + SA GQ FIF T+ FG +II T R+ F IL S +L+ + I+ + +G
Sbjct: 339 AHTLLLSICSACGQLFIFYTIGQFGAAVFTIIMTLRQAFAILLSCLLYGHTITVVGGLGV 398
Query: 1258 VLVFLGL 1278
+VF L
Sbjct: 399 AVVFAAL 405
>ref|XP_001928842.2| PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Sus
scrofa].
Length = 424
Score = 102 bits (255), Expect = 4e-22
Identities = 87/293 (29%), Positives = 126/293 (43%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q ++F I +Q
Sbjct: 106 ICVAGVFVFYLIYGYLQELIFSM---EGFKP----YGWYLTLVQFAFYSIFGLIELQLIQ 158
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 159 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 217
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A L + G+ F V + V + M+
Sbjct: 218 YNVADVSAALCMSLGLIWFTLADSTVA--PNFNLTGVILISLALCADAVIGNVQEKAMKL 275
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 276 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCSKNPVRTYGYAFLFSLTGYFGI 334
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S I FA P + +LV LG+
Sbjct: 335 SFVLALIKIFGALLAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGI 387
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,521,402
Number of extensions: 967636
Number of successful extensions: 3680
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3670
Number of HSP's successfully gapped: 4
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007921
(1312 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058032.1| solute carrier family 35 member B1 [Mus musculu... 578 e-165
Alignment gi|NP_082938.1| adenosine 3'-phospho 5'-phosphosulfate transpor... 124 2e-28
Alignment gi|NP_001163902.1| adenosine 3'-phospho 5'-phosphosulfate trans... 100 4e-21
Alignment gi|NP_001163901.1| adenosine 3'-phospho 5'-phosphosulfate trans... 100 4e-21
Alignment gi|NP_598821.1| adenosine 3'-phospho 5'-phosphosulfate transpor... 100 4e-21
>ref|NP_058032.1| solute carrier family 35 member B1 [Mus musculus].
Length = 322
Score = 578 bits (1489), Expect = e-165
Identities = 289/318 (90%), Positives = 296/318 (93%)
Frame = +1
Query: 358 MAASSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQC 537
MAAS SLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEG KQETFTFALTLVFIQC
Sbjct: 1 MAASRSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGPKQETFTFALTLVFIQC 60
Query: 538 VINAVFAKILIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCK 717
VINA+FAKILIQFFDTARVDRTR+WLYAACSVSY+GAMVSSNSALQFVNYPTQVLGKSCK
Sbjct: 61 VINAMFAKILIQFFDTARVDRTRTWLYAACSVSYVGAMVSSNSALQFVNYPTQVLGKSCK 120
Query: 718 PIPVMLLGVTLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXX 897
PIPVMLLGVTLL+KKYP+AKYLCVLLIVAGVALFMYKPKKVVGIEEHTVG+GE
Sbjct: 121 PIPVMLLGVTLLKKKYPLAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGFGELLLLMSL 180
Query: 898 XXXXXXXVSQDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIV 1077
VSQDHMRAHYQTGSNHMMLNINLWST LLGAGILFTGELWEFLSFAERYPTI+
Sbjct: 181 TLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTFLLGAGILFTGELWEFLSFAERYPTII 240
Query: 1078 YNILLFGLTSALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGT 1257
YNILLFGLTSALGQSFIFMTVVYFGPL CSIITTTRKFFTILASVILFANPIS MQWVGT
Sbjct: 241 YNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISSMQWVGT 300
Query: 1258 VLVFLGLGPDASFGKRTK 1311
VLVFLGLG DA FGK TK
Sbjct: 301 VLVFLGLGLDAKFGKGTK 318
>ref|NP_082938.1| adenosine 3'-phospho 5'-phosphosulfate transporter 1 [Mus musculus].
Length = 382
Score = 124 bits (310), Expect = 2e-28
Identities = 95/298 (31%), Positives = 140/298 (46%), Gaps = 2/298 (0%)
Frame = +1
Query: 391 LRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQ--ETFTFALTLVFIQCVINAVFAKI 564
L+L C G+ V Y +GILQE++ G YG A E FT + LV + V+ V A +
Sbjct: 61 LKLVFCASGLQVSYLTWGILQERVMTGSYGATATSPGEHFTDSQFLVLMNRVLALVVAGL 120
Query: 565 LIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGV 744
R + Y+ S+S + + AL+FV++PTQVL K+ K IPVM++G
Sbjct: 121 YCVLRKQPR-HGAPMYRYSFASLSNVLSSWCQYEALKFVSFPTQVLAKASKVIPVMMMGK 179
Query: 745 TLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVS 924
+ R+ Y +YL LI GV++F+ T G
Sbjct: 180 LVSRRSYEHWEYLTAGLISIGVSMFLLSSGPEPRSSPATTLSGLVLLAGYIAFDSFTSNW 239
Query: 925 QDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYNILLFGLT 1104
QD + A Y+ S MM +NL+S L +L G L E F R+ + LL +
Sbjct: 240 QDALFA-YKMSSVQMMFGVNLFSCLFTVGSLLEQGALLEGARFMGRHSEFALHALLLSIC 298
Query: 1105 SALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SA GQ FIF T+ FG +II T R+ IL S +L+ + ++ + +G +VF L
Sbjct: 299 SAFGQLFIFYTIGQFGAAVFTIIMTLRQAIAILLSCLLYGHTVTVVGGLGVAVVFTAL 356
>ref|NP_001163902.1| adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 1 [Mus
musculus].
Length = 413
Score = 99.8 bits (247), Expect = 4e-21
Identities = 84/293 (28%), Positives = 126/293 (43%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q +VF I +Q
Sbjct: 95 ICVAGVFVFYLIYGYLQELIFSV---EGFKP----YGWYLTLVQFAFYSVFGLIELQLTQ 147
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 148 DRR-RRIPGKTYMLIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 206
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + + V + M+
Sbjct: 207 YNLADVSAAVCMSLGLIWFTLADSTIA--PNFNLTGVMLISLALCADAVIGNVQEKAMKL 264
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 265 HNASNSEMVLYSYSIGFVYIL-LGLSCTSGLGPAVAFCSKNPVGTYGYAFLFSLTGYFGI 323
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK T++ S + FA P + +LV LG+
Sbjct: 324 SFVLALIKIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTFQYIWSGLLVVLGI 376
>ref|NP_001163901.1| adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 2 [Mus
musculus].
Length = 369
Score = 99.8 bits (247), Expect = 4e-21
Identities = 84/293 (28%), Positives = 126/293 (43%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q +VF I +Q
Sbjct: 51 ICVAGVFVFYLIYGYLQELIFSV---EGFKP----YGWYLTLVQFAFYSVFGLIELQLTQ 103
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 104 DRR-RRIPGKTYMLIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 162
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + + V + M+
Sbjct: 163 YNLADVSAAVCMSLGLIWFTLADSTIA--PNFNLTGVMLISLALCADAVIGNVQEKAMKL 220
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 221 HNASNSEMVLYSYSIGFVYIL-LGLSCTSGLGPAVAFCSKNPVGTYGYAFLFSLTGYFGI 279
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK T++ S + FA P + +LV LG+
Sbjct: 280 SFVLALIKIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTFQYIWSGLLVVLGI 332
>ref|NP_598821.1| adenosine 3'-phospho 5'-phosphosulfate transporter 2 isoform 2 [Mus
musculus].
Length = 369
Score = 99.8 bits (247), Expect = 4e-21
Identities = 84/293 (28%), Positives = 126/293 (43%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q +VF I +Q
Sbjct: 51 ICVAGVFVFYLIYGYLQELIFSV---EGFKP----YGWYLTLVQFAFYSVFGLIELQLTQ 103
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 104 DRR-RRIPGKTYMLIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 162
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + + V + M+
Sbjct: 163 YNLADVSAAVCMSLGLIWFTLADSTIA--PNFNLTGVMLISLALCADAVIGNVQEKAMKL 220
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 221 HNASNSEMVLYSYSIGFVYIL-LGLSCTSGLGPAVAFCSKNPVGTYGYAFLFSLTGYFGI 279
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK T++ S + FA P + +LV LG+
Sbjct: 280 SFVLALIKIFGALLAVTVTTGRKAMTVVLSFLFFAKPFTFQYIWSGLLVVLGI 332
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,976,759
Number of extensions: 1270845
Number of successful extensions: 4631
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4623
Number of HSP's successfully gapped: 8
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007921
(1312 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005818.1| solute carrier family 35 member B1 [Homo sapien... 584 e-167
Alignment gi|NP_835361.1| adenosine 3'-phospho 5'-phosphosulfate transpor... 124 2e-28
Alignment gi|NP_001136013.1| adenosine 3'-phospho 5'-phosphosulfate trans... 99 7e-21
Alignment gi|NP_001136012.1| adenosine 3'-phospho 5'-phosphosulfate trans... 99 7e-21
Alignment gi|NP_057032.2| adenosine 3'-phospho 5'-phosphosulfate transpor... 99 7e-21
>ref|NP_005818.1| solute carrier family 35 member B1 [Homo sapiens].
Length = 322
Score = 584 bits (1505), Expect = e-167
Identities = 292/318 (91%), Positives = 297/318 (93%)
Frame = +1
Query: 358 MAASSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQC 537
MA+SSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQC
Sbjct: 1 MASSSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQC 60
Query: 538 VINAVFAKILIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCK 717
VINAVFAKILIQFFDTARVDRTRSWLYAACS+SYLGAMVSSNSALQFVNYPTQVLGKSCK
Sbjct: 61 VINAVFAKILIQFFDTARVDRTRSWLYAACSISYLGAMVSSNSALQFVNYPTQVLGKSCK 120
Query: 718 PIPVMLLGVTLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXX 897
PIPVMLLGVTLL+KKYP+AKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGE
Sbjct: 121 PIPVMLLGVTLLKKKYPLAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGELLLLLSL 180
Query: 898 XXXXXXXVSQDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIV 1077
VSQDHMRAHYQTGSNHMMLNINLWSTLLLG GILFTGELWEFLSFAERYP I+
Sbjct: 181 TLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTLLLGMGILFTGELWEFLSFAERYPAII 240
Query: 1078 YNILLFGLTSALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGT 1257
YNILLFGLTSALGQSFIFMTVVYFGPL CSIITTTRKFFTILASVILFANPISPMQWVGT
Sbjct: 241 YNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGT 300
Query: 1258 VLVFLGLGPDASFGKRTK 1311
VLVFLGLG DA FGK K
Sbjct: 301 VLVFLGLGLDAKFGKGAK 318
>ref|NP_835361.1| adenosine 3'-phospho 5'-phosphosulfate transporter 1 [Homo sapiens].
Length = 432
Score = 124 bits (311), Expect = 2e-28
Identities = 96/311 (30%), Positives = 145/311 (46%), Gaps = 2/311 (0%)
Frame = +1
Query: 352 RLMAASSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQ--ETFTFALTLV 525
R AA ++ + L+L C G+ V Y +G+LQE++ YG A E FT + LV
Sbjct: 97 RTEAAETTPMWQALKLLFCATGLQVSYLTWGVLQERVMTRSYGATATSPGERFTDSQFLV 156
Query: 526 FIQCVINAVFAKILIQFFDTARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLG 705
+ V+ + A + R + Y+ S+S + + AL+FV++PTQVL
Sbjct: 157 LMNRVLALIVAGLSCVLCKQPR-HGAPMYRYSFASLSNVLSSWCQYEALKFVSFPTQVLA 215
Query: 706 KSCKPIPVMLLGVTLLRKKYPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXX 885
K+ K IPVML+G + R+ Y +YL LI GV++F+ T G
Sbjct: 216 KASKVIPVMLMGKLVSRRSYEHWEYLTATLISIGVSMFLLSSGPEPRSSPATTLSGLILL 275
Query: 886 XXXXXXXXXXXVSQDHMRAHYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERY 1065
QD + A Y+ S MM +N +S L +L G L E F R+
Sbjct: 276 AGYIAFDSFTSNWQDALFA-YKMSSVQMMFGVNFFSCLFTVGSLLEQGALLEGTRFMGRH 334
Query: 1066 PTIVYNILLFGLTSALGQSFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQ 1245
+ LL + SA GQ FIF T+ FG +II T R+ F IL S +L+ + ++ +
Sbjct: 335 SEFAAHALLLSICSACGQLFIFYTIGQFGAAVFTIIMTLRQAFAILLSCLLYGHTVTVVG 394
Query: 1246 WVGTVLVFLGL 1278
+G +VF L
Sbjct: 395 GLGVAVVFAAL 405
>ref|NP_001136013.1| adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Homo sapiens].
Length = 401
Score = 99.4 bits (246), Expect = 7e-21
Identities = 85/293 (29%), Positives = 125/293 (42%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q ++F I +Q
Sbjct: 83 ICVAGVFVFYLIYGYLQELIFSV---EGFK----SCGWYLTLVQFAFYSIFGLIELQLIQ 135
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 136 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 194
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + V + M+
Sbjct: 195 YNVADVSAAICMSLGLIWFTLADSTTA--PNFNLTGVVLISLALCADAVIGNVQEKAMKL 252
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 253 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGI 311
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S I FA P + +LV LG+
Sbjct: 312 SFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGI 364
>ref|NP_001136012.1| adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Homo sapiens].
Length = 401
Score = 99.4 bits (246), Expect = 7e-21
Identities = 85/293 (29%), Positives = 125/293 (42%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q ++F I +Q
Sbjct: 83 ICVAGVFVFYLIYGYLQELIFSV---EGFK----SCGWYLTLVQFAFYSIFGLIELQLIQ 135
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 136 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 194
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + V + M+
Sbjct: 195 YNVADVSAAICMSLGLIWFTLADSTTA--PNFNLTGVVLISLALCADAVIGNVQEKAMKL 252
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 253 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGI 311
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S I FA P + +LV LG+
Sbjct: 312 SFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGI 364
>ref|NP_057032.2| adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Homo sapiens].
Length = 401
Score = 99.4 bits (246), Expect = 7e-21
Identities = 85/293 (29%), Positives = 125/293 (42%), Gaps = 1/293 (0%)
Frame = +1
Query: 403 LCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFD 582
+C GVFV Y YG LQE I EG K + L +Q ++F I +Q
Sbjct: 83 ICVAGVFVFYLIYGYLQELIFSV---EGFK----SCGWYLTLVQFAFYSIFGLIELQLIQ 135
Query: 583 TARVDRTRSWLYAACSVSYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLRKK 762
R R Y + +G M SN++L ++NYPTQV+ K CK IPVML GV + K+
Sbjct: 136 DKR-RRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKR 194
Query: 763 YPMAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGEXXXXXXXXXXXXXXVSQDHMRA 942
Y +A + + G+ F + V + M+
Sbjct: 195 YNVADVSAAICMSLGLIWFTLADSTTA--PNFNLTGVVLISLALCADAVIGNVQEKAMKL 252
Query: 943 HYQTGSNHMMLNINLWSTLLLGAGILFTGELWEFLSFAERYPTIVYN-ILLFGLTSALGQ 1119
H + S ++ + ++ +L G+ T L ++F + P Y LF LT G
Sbjct: 253 HNASNSEMVLYSYSIGFVYIL-LGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGI 311
Query: 1120 SFIFMTVVYFGPLNCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGL 1278
SF+ + FG L +TT RK TI+ S I FA P + +LV LG+
Sbjct: 312 SFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGI 364
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,119,305
Number of extensions: 1519065
Number of successful extensions: 5706
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5694
Number of HSP's successfully gapped: 8
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007921
(1312 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 898 0.0
gb|JH118504.1| Sus scrofa unplaced genomic scaffold ChrUScaf745 329 2e-87
Sscrofa_Chr15 147 2e-32
>Sscrofa_Chr12
|| Length = 63588571
Score = 898 bits (453), Expect = 0.0
Identities = 459/461 (99%)
Strand = Plus / Minus
Query: 1 ctaggccttcccgtctagctccgtgtcgaagttgtcctcggagttgcctgatcggaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25895148 ctaggccttcccgtctagctccgtgtcgaagttgtcctcggagttgcctgatcggaaagt 25895089
Query: 61 ctcgagagcaaggcgttaccctcggggtatttggcacgcttggccacccgggacaaggac 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 25895088 ctcgagagcaaggcgttaccctcggggtatttggctcgcttggccacccgggacaaggac 25895029
Query: 121 aaagccccagggcgggtctcctttccttagaagcgggtgctgggttctgaggagtttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25895028 aaagccccagggcgggtctcctttccttagaagcgggtgctgggttctgaggagtttcct 25894969
Query: 181 cctagtcagacctgagctggcagttctagcggtagctgctggggccctactgggcagcgg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 25894968 cctagtcagacctgagctggcagttctagcggtagccgctggggccctactgggcagcgg 25894909
Query: 241 tcgcatgcagctcctatgagggccctgtcgccggtcggcgatgtccggctggacctgtcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25894908 tcgcatgcagctcctatgagggccctgtcgccggtcggcgatgtccggctggacctgtcg 25894849
Query: 301 ccgccgccgccgctgccggctgtgagcgggtctccggtcgggtcgtccgggcgtctcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25894848 ccgccgccgccgctgccggctgtgagcgggtctccggtcgggtcgtccgggcgtctcatg 25894789
Query: 361 gccgctagcagctccctggtgcccgaccggctgcgcctgccgctgtgtttcctcggcgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25894788 gccgctagcagctccctggtgcccgaccggctgcgcctgccgctgtgtttcctcggcgtc 25894729
Query: 421 tttgtctgctatttctactatgggatactgcaggaaaagat 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 25894728 tttgtctgctatttctactatgggatactgcaggaaaagat 25894688
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 726 agtcatgctccttggagtgacccttttgaggaagaaatatccgatggccaagtacctgtg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25892406 agtcatgctccttggagtgacccttttgaggaagaaatatccgatggccaagtacctgtg 25892347
Query: 786 cgtgttgctaattgtggctggggtggcccttttcatgtacaaacccaagaaagtagtcgg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25892346 cgtgttgctaattgtggctggggtggcccttttcatgtacaaacccaagaaagtagtcgg 25892287
Query: 846 gatagaagaacacacagtgggctatggagagctgctcctg 885
||||||||||||||||||||||||||||||||||||||||
Sbjct: 25892286 gatagaagaacacacagtgggctatggagagctgctcctg 25892247
Score = 297 bits (150), Expect = 8e-78
Identities = 156/158 (98%)
Strand = Plus / Minus
Query: 1118 agagcttcatcttcatgacagtcgtgtattttggtcccctgaactgctccatcatcacca 1177
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 25890004 agagcttcatcttcatgacagtcgtgtattttggtcccctgacctgctccatcatcacca 25889945
Query: 1178 caactcgaaagttcttcaccattttggcctctgtgatcctcttcgccaacccaatcagcc 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 25889944 caactcgaaagttcttcaccattttggcctctgtgatcctcttcgccaaccccatcagcc 25889885
Query: 1238 ccatgcagtgggtgggcactgtattggtattcttgggt 1275
||||||||||||||||||||||||||||||||||||||
Sbjct: 25889884 ccatgcagtgggtgggcactgtattggtattcttgggt 25889847
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 566 tgatccagttttttgacactgccagggtggatcggactcggagctggctctatgctgctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25893323 tgatccagttttttgacactgccagggtggatcggactcggagctggctctatgctgctt 25893264
Query: 626 gttctgtctcctatctgggcgccatggtctccagcaactcagcactacagtttgtcaact 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25893263 gttctgtctcctatctgggcgccatggtctccagcaactcagcactacagtttgtcaact 25893204
Query: 686 acccaactcaggt 698
|||||||||||||
Sbjct: 25893203 acccaactcaggt 25893191
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 885 gctcttgtccctcaccctggatggcctgaccggcgtttcccaggaccacatgcgggctca 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25891310 gctcttgtccctcaccctggatggcctgaccggcgtttcccaggaccacatgcgggctca 25891251
Query: 945 ctaccaaacgggctccaaccacatgatgctgaacatcaacctctggtcaacgttgctgct 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25891250 ctaccaaacgggctccaaccacatgatgctgaacatcaacctctggtcaacgttgctgct 25891191
Query: 1005 aggagccgg 1013
|||||||||
Sbjct: 25891190 aggagccgg 25891182
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1012 ggaatcctgttcactggggagctctgggagttcctgagctttgccgaaaggtaccccacc 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25890266 ggaatcctgttcactggggagctctgggagttcctgagctttgccgaaaggtaccccacc 25890207
Query: 1072 atcgtctataacatcttgctctttggcctgaccagtgccctgggtcag 1119
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25890206 atcgtctataacatcttgctctttggcctgaccagtgccctgggtcag 25890159
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 462 aacaagaggaaagtatggggagggagccaagcaggagacgttcacttttgccttaacttt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25894024 aacaagaggaaagtatggggagggagccaagcaggagacgttcacttttgccttaacttt 25893965
Query: 522 ggtcttcatccagtgtgtgatcaatgctgtgtttgccaagatct 565
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25893964 ggtcttcatccagtgtgtgatcaatgctgtgtttgccaagatct 25893921
>gb|JH118504.1| Sus scrofa unplaced genomic scaffold ChrUScaf745
Length = 144284
Score = 329 bits (166), Expect = 2e-87
Identities = 169/170 (99%)
Strand = Plus / Plus
Query: 122 aagccccagggcgggtctcctttccttagaagcgggtgctgggttctgaggagtttcctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43772 aagccccagggcgggtctcctttccttagaagcgggtgctgggttctgaggagtttcctc 43831
Query: 182 ctagtcagacctgagctggcagttctagcggtagctgctggggccctactgggcagcggt 241
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 43832 ctagtcagacctgagctggcagttctagcggtagccgctggggccctactgggcagcggt 43891
Query: 242 cgcatgcagctcctatgagggccctgtcgccggtcggcgatgtccggctg 291
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43892 cgcatgcagctcctatgagggccctgtcgccggtcggcgatgtccggctg 43941
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 726 agtcatgctccttggagtgacccttttgaggaagaaatatccgatggccaagtacctgtg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46405 agtcatgctccttggagtgacccttttgaggaagaaatatccgatggccaagtacctgtg 46464
Query: 786 cgtgttgctaattgtggctggggtggcccttttcatgtacaaacccaagaaagtagtcgg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46465 cgtgttgctaattgtggctggggtggcccttttcatgtacaaacccaagaaagtagtcgg 46524
Query: 846 gatagaagaacacacagtgggctatggagagctgctcctg 885
||||||||||||||||||||||||||||||||||||||||
Sbjct: 46525 gatagaagaacacacagtgggctatggagagctgctcctg 46564
Score = 297 bits (150), Expect = 8e-78
Identities = 156/158 (98%)
Strand = Plus / Plus
Query: 1118 agagcttcatcttcatgacagtcgtgtattttggtcccctgaactgctccatcatcacca 1177
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 49024 agagcttcatcttcatgacagtcgtgtattttggtcccctgacctgctccatcatcacca 49083
Query: 1178 caactcgaaagttcttcaccattttggcctctgtgatcctcttcgccaacccaatcagcc 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 49084 caactcgaaagttcttcaccattttggcctctgtgatcctcttcgccaaccccatcagcc 49143
Query: 1238 ccatgcagtgggtgggcactgtattggtattcttgggt 1275
||||||||||||||||||||||||||||||||||||||
Sbjct: 49144 ccatgcagtgggtgggcactgtattggtattcttgggt 49181
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 566 tgatccagttttttgacactgccagggtggatcggactcggagctggctctatgctgctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45450 tgatccagttttttgacactgccagggtggatcggactcggagctggctctatgctgctt 45509
Query: 626 gttctgtctcctatctgggcgccatggtctccagcaactcagcactacagtttgtcaact 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45510 gttctgtctcctatctgggcgccatggtctccagcaactcagcactacagtttgtcaact 45569
Query: 686 acccaactcaggt 698
|||||||||||||
Sbjct: 45570 acccaactcaggt 45582
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 885 gctcttgtccctcaccctggatggcctgaccggcgtttcccaggaccacatgcgggctca 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47644 gctcttgtccctcaccctggatggcctgaccggcgtttcccaggaccacatgcgggctca 47703
Query: 945 ctaccaaacgggctccaaccacatgatgctgaacatcaacctctggtcaacgttgctgct 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47704 ctaccaaacgggctccaaccacatgatgctgaacatcaacctctggtcaacgttgctgct 47763
Query: 1005 aggagccgg 1013
|||||||||
Sbjct: 47764 aggagccgg 47772
Score = 214 bits (108), Expect = 9e-53
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1012 ggaatcctgttcactggggagctctgggagttcctgagctttgccgaaaggtaccccacc 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48762 ggaatcctgttcactggggagctctgggagttcctgagctttgccgaaaggtaccccacc 48821
Query: 1072 atcgtctataacatcttgctctttggcctgaccagtgccctgggtcag 1119
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48822 atcgtctataacatcttgctctttggcctgaccagtgccctgggtcag 48869
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 462 aacaagaggaaagtatggggagggagccaagcaggagacgttcacttttgccttaacttt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44749 aacaagaggaaagtatggggagggagccaagcaggagacgttcacttttgccttaacttt 44808
Query: 522 ggtcttcatccagtgtgtgatcaatgctgtgtttgccaagatct 565
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44809 ggtcttcatccagtgtgtgatcaatgctgtgtttgccaagatct 44852
Score = 87.7 bits (44), Expect = 1e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 418 gtctttgtctgctatttctactatgggatactgcaggaaaagat 461
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44042 gtctttgtctgctatttctactatgggatactgcaggaaaagat 44085
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 693 tcaggtccttggtaaatcctgcaagccaatcccag 727
|||||||||||||||||||||||||||||||||||
Sbjct: 45857 tcaggtccttggtaaatcctgcaagccaatcccag 45891
>Sscrofa_Chr15
|| Length = 157681621
Score = 147 bits (74), Expect = 2e-32
Identities = 134/154 (87%)
Strand = Plus / Minus
Query: 1002 gctaggagccggaatcctgttcactggggagctctgggagttcctgagctttgccgaaag 1061
|||||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 33777546 gctaggggctggaatcctgttcactggggagctctgggagttcttgagctttggtgaaag 33777487
Query: 1062 gtaccccaccatcgtctataacatcttgctctttggcctgaccagtgccctgggtcagag 1121
||||| ||| |||||||| |||||||||||||||||||| ||||||| |||||
Sbjct: 33777486 ttaccctgccaatgtctataatatcttgctctttggcctgactggtgccctcatacagag 33777427
Query: 1122 cttcatcttcatgacagtcgtgtattttggtccc 1155
||||||||||||||||| ||||||||||||||
Sbjct: 33777426 gttcatcttcatgacagttatgtattttggtccc 33777393
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,851,405
Number of extensions: 500
Number of successful extensions: 500
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 17
Length of query: 1312
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1291
Effective length of database: 2,808,413,156
Effective search space: 3625661384396
Effective search space used: 3625661384396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)