Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007922
(1292 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696114.1| PREDICTED: CD79B antigen-like [Bos taurus]. 304 1e-82
Alignment gi|XP_586841.3| PREDICTED: CD79B antigen-like [Bos taurus]. 139 4e-33
>ref|XP_002696114.1| PREDICTED: CD79B antigen-like [Bos taurus].
Length = 229
Score = 304 bits (779), Expect = 1e-82
Identities = 151/207 (72%), Positives = 163/207 (78%), Gaps = 1/207 (0%)
Frame = +1
Query: 160 GETVLEAETKEL-RDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDPGIVSWLRKQEAD 336
GE VL +T +L RDPKG CSRIWQHPRFVA+KRGS VEIRC+VED G+VSW RK + D
Sbjct: 23 GEKVLADKTDDLLRDPKGNTCSRIWQHPRFVAKKRGSTVEIRCHVEDDGLVSWFRKPKPD 82
Query: 337 LEPKIFPPEEGRIIQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRV 516
EPK E+GRI+Q+ SEA L I VQFQDNG+Y+CKQEC+K RTE GCGTELRV
Sbjct: 83 SEPKTLHAEQGRILQSHNKSEAVLTILSVQFQDNGIYFCKQECAKGTQRTEHGCGTELRV 142
Query: 517 MGFSTLAQLKRRNTLKDGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDID 696
MGFSTLAQLKRRNTLKDGIIMIQT DKDDSK GMEEDHTYEGLDID
Sbjct: 143 MGFSTLAQLKRRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDID 202
Query: 697 QTATYEDIVTLRTGEVKWSVGEHPGQE 777
QTATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 203 QTATYEDIVTLRTGEVKWSVGEHPGQE 229
>ref|XP_586841.3| PREDICTED: CD79B antigen-like [Bos taurus].
Length = 245
Score = 139 bits (351), Expect = 4e-33
Identities = 70/86 (81%), Positives = 70/86 (81%)
Frame = +1
Query: 520 GFSTLAQLKRRNTLKDGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDIDQ 699
GFSTLAQLKRRNTLKDGIIMIQT DKDDSK GMEEDHTYEGLDIDQ
Sbjct: 160 GFSTLAQLKRRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQ 219
Query: 700 TATYEDIVTLRTGEVKWSVGEHPGQE 777
TATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 220 TATYEDIVTLRTGEVKWSVGEHPGQE 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,184,666
Number of extensions: 2142664
Number of successful extensions: 18560
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 17483
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007922
(1292 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850416.1| PREDICTED: similar to CD79B antigen isoform 1 p... 274 2e-73
Alignment gi|XP_861417.1| PREDICTED: similar to CD79B antigen isoform 1 p... 254 1e-67
>ref|XP_850416.1| PREDICTED: similar to CD79B antigen isoform 1 precursor isoform 2
[Canis familiaris].
Length = 224
Score = 274 bits (700), Expect = 2e-73
Identities = 135/194 (69%), Positives = 154/194 (79%)
Frame = +1
Query: 196 RDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDPGIVSWLRKQEADLEPKIFPPEEGRI 375
+DPKG CS IWQ PRF+ARKRG++VEIRC+ +D G VSWL K+E DLEPK P E+ R+
Sbjct: 34 QDPKGSTCSGIWQSPRFIARKRGAVVEIRCHTKDVGAVSWLWKREMDLEPKPLPRED-RL 92
Query: 376 IQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVMGFSTLAQLKRRN 555
+Q+Q S ATL IQG+QF DNG+Y+C+Q+CSK +GCGTELRVMGFSTLAQLKRRN
Sbjct: 93 LQSQNDSVATLTIQGIQFSDNGIYFCQQKCSKGSF--SKGCGTELRVMGFSTLAQLKRRN 150
Query: 556 TLKDGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDIDQTATYEDIVTLRT 735
TLKDGIIMIQT DKDDSK GM+EDHTYEGL+IDQTATYEDIVTLRT
Sbjct: 151 TLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMDEDHTYEGLNIDQTATYEDIVTLRT 210
Query: 736 GEVKWSVGEHPGQE 777
GEVKWSVGEHPGQE
Sbjct: 211 GEVKWSVGEHPGQE 224
>ref|XP_861417.1| PREDICTED: similar to CD79B antigen isoform 1 precursor isoform 3
[Canis familiaris].
Length = 222
Score = 254 bits (650), Expect = 1e-67
Identities = 126/185 (68%), Positives = 145/185 (78%)
Frame = +1
Query: 196 RDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDPGIVSWLRKQEADLEPKIFPPEEGRI 375
+DPKG CS IWQ PRF+ARKRG++VEIRC+ +D G VSWL K+E DLEPK P E+ R+
Sbjct: 34 QDPKGSTCSGIWQSPRFIARKRGAVVEIRCHTKDVGAVSWLWKREMDLEPKPLPRED-RL 92
Query: 376 IQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVMGFSTLAQLKRRN 555
+Q+Q S ATL IQG+QF DNG+Y+C+Q+CSK +GCGTELRVMGFSTLAQLKRRN
Sbjct: 93 LQSQNDSVATLTIQGIQFSDNGIYFCQQKCSKGSF--SKGCGTELRVMGFSTLAQLKRRN 150
Query: 556 TLKDGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDIDQTATYEDIVTLRT 735
TLKDGIIMIQT DKDDSK GM+EDHTYEGL+IDQTATYEDIVTLRT
Sbjct: 151 TLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMDEDHTYEGLNIDQTATYEDIVTLRT 210
Query: 736 GEVKW 750
GEVKW
Sbjct: 211 GEVKW 215
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,861,858
Number of extensions: 2220767
Number of successful extensions: 18902
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 17828
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007922
(1292 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230841.1| CD79b molecule, immunoglobulin-associated be... 387 e-108
>ref|NP_001230841.1| CD79b molecule, immunoglobulin-associated beta [Sus scrofa].
Length = 228
Score = 387 bits (995), Expect = e-108
Identities = 190/205 (92%), Positives = 190/205 (92%)
Frame = +1
Query: 160 GETVLEAETKELRDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDPGIVSWLRKQEADL 339
GETVLEAETKELRDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDPGIVSWLRKQEADL
Sbjct: 23 GETVLEAETKELRDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDPGIVSWLRKQEADL 82
Query: 340 EPKIFPPEEGRIIQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVM 519
EPKIFPPEEGRIIQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVM
Sbjct: 83 EPKIFPPEEGRIIQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVM 142
Query: 520 GFSTLAQLKRRNTLKDGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDIDQ 699
GFSTLAQLKRRNTLKDGIIMIQT DKDDSKPGMEEDHTYEGLDIDQ
Sbjct: 143 GFSTLAQLKRRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKPGMEEDHTYEGLDIDQ 202
Query: 700 TATYEDIVTLRTGEVKWSVGEHPGQ 774
TATYEDIVTLRTGEVKWSVGEHPGQ
Sbjct: 203 TATYEDIVTLRTGEVKWSVGEHPGQ 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,428,551
Number of extensions: 1399612
Number of successful extensions: 12451
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11537
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007922
(1292 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032365.1| B-cell antigen receptor complex-associated prot... 241 9e-64
>ref|NP_032365.1| B-cell antigen receptor complex-associated protein beta chain
precursor [Mus musculus].
Length = 228
Score = 241 bits (615), Expect = 9e-64
Identities = 116/191 (60%), Positives = 136/191 (71%)
Frame = +1
Query: 205 KGGACSRIWQHPRFVARKRGSMVEIRCYVEDPGIVSWLRKQEADLEPKIFPPEEGRIIQN 384
+G CS+IWQHPRF A+KR SMV+ CY G ++W RK+ + +P+ EEGRI+Q
Sbjct: 39 QGSPCSQIWQHPRFAAKKRSSMVKFHCYTNHSGALTWFRKRGSQ-QPQELVSEEGRIVQT 97
Query: 385 QTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVMGFSTLAQLKRRNTLK 564
Q S TL IQ +Q++DNG+Y+CKQ+C CGTEL V+GFSTL QLKRRNTLK
Sbjct: 98 QNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTLK 157
Query: 565 DGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDIDQTATYEDIVTLRTGEV 744
DGII+IQT DKDD K GMEEDHTYEGL+IDQTATYEDIVTLRTGEV
Sbjct: 158 DGIILIQTLLIILFIIVPIFLLLDKDDGKAGMEEDHTYEGLNIDQTATYEDIVTLRTGEV 217
Query: 745 KWSVGEHPGQE 777
KWSVGEHPGQE
Sbjct: 218 KWSVGEHPGQE 228
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,155,320
Number of extensions: 1719323
Number of successful extensions: 13886
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13025
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007922
(1292 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000617.1| B-cell antigen receptor complex-associated prot... 259 3e-69
Alignment gi|NP_001035022.1| B-cell antigen receptor complex-associated p... 259 3e-69
Alignment gi|NP_067613.1| B-cell antigen receptor complex-associated prot... 138 1e-32
>ref|NP_000617.1| B-cell antigen receptor complex-associated protein beta chain
isoform 1 precursor [Homo sapiens].
Length = 229
Score = 259 bits (663), Expect = 3e-69
Identities = 130/195 (66%), Positives = 149/195 (76%), Gaps = 1/195 (0%)
Frame = +1
Query: 196 RDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDP-GIVSWLRKQEADLEPKIFPPEEGR 372
R+PKG ACSRIWQ PRF+ARKRG V++ CY+ G VSWL KQE D P+ E+GR
Sbjct: 36 RNPKGSACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGR 95
Query: 373 IIQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVMGFSTLAQLKRR 552
+ ++Q S ATL IQG++F+DNG+Y+C+Q+C+ QGCGTELRVMGFSTLAQLK+R
Sbjct: 96 MEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTS-EVYQGCGTELRVMGFSTLAQLKQR 154
Query: 553 NTLKDGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDIDQTATYEDIVTLR 732
NTLKDGIIMIQT DKDDSK GMEEDHTYEGLDIDQTATYEDIVTLR
Sbjct: 155 NTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLR 214
Query: 733 TGEVKWSVGEHPGQE 777
TGEVKWSVGEHPGQE
Sbjct: 215 TGEVKWSVGEHPGQE 229
>ref|NP_001035022.1| B-cell antigen receptor complex-associated protein beta chain
isoform 3 precursor [Homo sapiens].
Length = 230
Score = 259 bits (663), Expect = 3e-69
Identities = 130/195 (66%), Positives = 149/195 (76%), Gaps = 1/195 (0%)
Frame = +1
Query: 196 RDPKGGACSRIWQHPRFVARKRGSMVEIRCYVEDP-GIVSWLRKQEADLEPKIFPPEEGR 372
R+PKG ACSRIWQ PRF+ARKRG V++ CY+ G VSWL KQE D P+ E+GR
Sbjct: 37 RNPKGSACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGR 96
Query: 373 IIQNQTTSEATLIIQGVQFQDNGVYYCKQECSKEPLRTEQGCGTELRVMGFSTLAQLKRR 552
+ ++Q S ATL IQG++F+DNG+Y+C+Q+C+ QGCGTELRVMGFSTLAQLK+R
Sbjct: 97 MEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTS-EVYQGCGTELRVMGFSTLAQLKQR 155
Query: 553 NTLKDGIIMIQTXXXXXXXXXXXXXXXDKDDSKPGMEEDHTYEGLDIDQTATYEDIVTLR 732
NTLKDGIIMIQT DKDDSK GMEEDHTYEGLDIDQTATYEDIVTLR
Sbjct: 156 NTLKDGIIMIQTLLIILFIIVPIFLLLDKDDSKAGMEEDHTYEGLDIDQTATYEDIVTLR 215
Query: 733 TGEVKWSVGEHPGQE 777
TGEVKWSVGEHPGQE
Sbjct: 216 TGEVKWSVGEHPGQE 230
>ref|NP_067613.1| B-cell antigen receptor complex-associated protein beta chain
isoform 2 precursor [Homo sapiens].
Length = 125
Score = 138 bits (348), Expect = 1e-32
Identities = 72/104 (69%), Positives = 75/104 (72%)
Frame = +1
Query: 466 SKEPLRTEQGCGTELRVMGFSTLAQLKRRNTLKDGIIMIQTXXXXXXXXXXXXXXXDKDD 645
S EP+ + GFSTLAQLK+RNTLKDGIIMIQT DKDD
Sbjct: 22 SAEPVPAARSEDRYRNPKGFSTLAQLKQRNTLKDGIIMIQTLLIILFIIVPIFLLLDKDD 81
Query: 646 SKPGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 777
SK GMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE
Sbjct: 82 SKAGMEEDHTYEGLDIDQTATYEDIVTLRTGEVKWSVGEHPGQE 125
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,197,148
Number of extensions: 2135488
Number of successful extensions: 17737
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 16694
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007922
(1292 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1082 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1082 bits (546), Expect = 0.0
Identities = 583/593 (98%), Gaps = 2/593 (0%)
Strand = Plus / Plus
Query: 680 agggcctggacattgaccagacagccacttacgaggacatagtgacactgcggacagggg 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047236 agggcctggacattgaccagacagccacttacgaggacatagtgacactgcggacagggg 15047295
Query: 740 aggtgaagtggtcggtgggtgagcaccctggccaggagtgaggggccggccatccctgcg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047296 aggtgaagtggtcggtgggtgagcaccctggccaggagtgaggggccggccatccctgcg 15047355
Query: 800 cccccgggcccagcctgctggaccctcattgactgcttcagagccgcctggctcccagcc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047356 cccccgggcccagcctgctggaccctcattgactgcttcagagccgcctggctcccagcc 15047415
Query: 860 cacccccctttctctggagcccctgtcagcctccaaagctggccagccagatccgcctgt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047416 cacccccctttctctggagcccctgtcagcctccaaagctggccagccagatccgcctgt 15047475
Query: 920 ccctcccgcccttggtccccaactctcaccggagggactggagtggaagggccgcagggc 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047476 ccctcccgcccttggtccccaactctcaccggagggactggagtggaagggccgcagggc 15047535
Query: 980 agtgatttggaggagggagttctctggggctagactggacccagccctctgggggtgccg 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047536 agtgatttggaggagggagttctctggggctagactggacccagccctctgggggtgccg 15047595
Query: 1040 tgcggagatccacgccccgttcaggatggagaaggcagagacgtgtctggaacctataga 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047596 tgcggagatccacgccccgttcaggatggagaaggcagagacgtgtctggaacctataga 15047655
Query: 1100 tggactcagagcagaccggctttctgcggagtctaggaagggccagggcccaccccgatg 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047656 tggactcagagcagaccggctttctgcggagtctaggaagggccagggcccaccccgatg 15047715
Query: 1160 tggccacggaggggccaccaagaacttcatccctctgctagcctcgcccaccccaggggc 1219
||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||
Sbjct: 15047716 tggccacggaggggccaccaagagcttcatccctctcctaccctcgcccaccccaggggc 15047775
Query: 1220 tcctggtcctc-atcccattcntccatggaaataacagtgtgtcttgagaaac 1271
|||||| |||| | ||||||| |||||||| ||||||||||||||||||||
Sbjct: 15047776 tcctgg-cctcaaacccattctcccatggaataaacagtgtgtcttgagaaac 15047827
Score = 626 bits (316), Expect = e-177
Identities = 319/320 (99%)
Strand = Plus / Plus
Query: 202 cccaaaggaggcgcttgctcccggatctggcagcacccacgtttcgtggccaggaaacgg 261
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046150 cccacaggaggcgcttgctcccggatctggcagcacccacgtttcgtggccaggaaacgg 15046209
Query: 262 ggctccatggtggaaatcaggtgctacgtggaggaccccggcatcgtaagctggctccgg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046210 ggctccatggtggaaatcaggtgctacgtggaggaccccggcatcgtaagctggctccgg 15046269
Query: 322 aagcaggaggcggacttggagcccaagatatttccgcccgaagagggccgcatcatccag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046270 aagcaggaggcggacttggagcccaagatatttccgcccgaagagggccgcatcatccag 15046329
Query: 382 aatcagaccacctccgaggccactctcatcatccagggtgtccagtttcaggacaacggt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046330 aatcagaccacctccgaggccactctcatcatccagggtgtccagtttcaggacaacggt 15046389
Query: 442 gtctattactgcaagcaggagtgctccaaggagcccctgaggacagagcagggctgtggc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046390 gtctattactgcaagcaggagtgctccaaggagcccctgaggacagagcagggctgtggc 15046449
Query: 502 actgagcttcgggtcatggg 521
||||||||||||||||||||
Sbjct: 15046450 actgagcttcgggtcatggg 15046469
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 1 gaggagacaggctgcagccaaggcagttacacgttttccccccaggagcctccgaggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15044366 gaggagacaggctgcagccaaggcagttacacgttttccccccaggagcctccgaggtca 15044425
Query: 61 cgggcttggggaaggggacgcggaggggcgagcatggcggggcccgcgctgtctcccggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15044426 cgggcttggggaaggggacgcggaggggcgagcatggcggggcccgcgctgtctcccggg 15044485
Query: 121 ctcagcaactggttggtgctgctgctgctgctcctctcaggt 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15044486 ctcagcaactggttggtgctgctgctgctgctcctctcaggt 15044527
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 520 gggttcagcaccctggcacagctgaagcggcggaacacgctgaaggatggcatcatcatg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046698 gggttcagcaccctggcacagctgaagcggcggaacacgctgaaggatggcatcatcatg 15046757
Query: 580 atccagaccctgctcatcatcctcttcatcatcgtgcccatcttcctgctcctggacaag 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046758 atccagaccctgctcatcatcctcttcatcatcgtgcccatcttcctgctcctggacaag 15046817
Query: 640 g 640
|
Sbjct: 15046818 g 15046818
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 158 caggtgagacggtgctggaggccgaaacaaaggaactccgggatcccaaagg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15045155 caggtgagacggtgctggaggccgaaacaaaggaactccgggatcccaaagg 15045206
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 638 aggacgacagcaagcctgggatggaagaggatcacacctacgagg 682
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15047084 aggacgacagcaagcctgggatggaagaggatcacacctacgagg 15047128
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,663,672
Number of extensions: 512
Number of successful extensions: 512
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 6
Length of query: 1292
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1271
Effective length of database: 2,808,413,156
Effective search space: 3569493121276
Effective search space used: 3569493121276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)