Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007923
(1014 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098915.1| E3 ubiquitin-protein ligase RNF5 [Bos taurus]. 310 1e-84
Alignment gi|NP_001077172.1| RING finger protein 185 [Bos taurus]. 208 5e-54
Alignment gi|XP_002693128.1| PREDICTED: c-cbl-like [Bos taurus]. 49 9e-06
Alignment gi|XP_605809.4| PREDICTED: CG7864-like [Bos taurus]. 49 9e-06
>ref|NP_001098915.1| E3 ubiquitin-protein ligase RNF5 [Bos taurus].
Length = 180
Score = 310 bits (794), Expect = 1e-84
Identities = 139/140 (99%), Positives = 139/140 (99%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISRE VVPLYGRG
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISRENVVPLYGRG 83
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 653
SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP
Sbjct: 84 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 143
Query: 654 FRRGTGVDLGQGHPASSWQD 713
FRRGTGVDLGQGHPASSWQD
Sbjct: 144 FRRGTGVDLGQGHPASSWQD 163
>ref|NP_001077172.1| RING finger protein 185 [Bos taurus].
Length = 192
Score = 208 bits (530), Expect = 5e-54
Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 1/120 (0%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CPVCKAGISR+KV+PLYGRG
Sbjct: 36 TFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRG 95
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSFGVGAFPFGFFTTVFNTHE 650
S QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SFG+GAFPFG F T FN ++
Sbjct: 96 STGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNIND 155
>ref|XP_002693128.1| PREDICTED: c-cbl-like [Bos taurus].
Length = 936
Score = 48.5 bits (114), Expect = 9e-06
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 294 TFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGR 470
TF+ C IC E ++ + CGHL C CL W E+ E Q CP C+ I + + +
Sbjct: 399 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV--- 453
Query: 471 GSQKPQDPRLKTPPRPQGQRPAP 539
P DPR QG AP
Sbjct: 454 ---DPFDPRGSGSLLRQGAEGAP 473
>ref|XP_605809.4| PREDICTED: CG7864-like [Bos taurus].
Length = 797
Score = 48.5 bits (114), Expect = 9e-06
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 294 TFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGR 470
TF+ C IC E ++ + CGHL C CL W E+ E Q CP C+ I + + +
Sbjct: 304 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV--- 358
Query: 471 GSQKPQDPRLKTPPRPQGQRPAP 539
P DPR QG AP
Sbjct: 359 ---DPFDPRGSGSLLRQGAEGAP 378
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,481,177
Number of extensions: 1640546
Number of successful extensions: 9426
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9247
Number of HSP's successfully gapped: 4
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007923
(1014 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532092.1| PREDICTED: similar to ring finger protein 5 iso... 306 3e-83
Alignment gi|XP_860897.1| PREDICTED: similar to ring finger protein 5 iso... 299 2e-81
Alignment gi|XP_860837.1| PREDICTED: similar to ring finger protein 5 iso... 238 7e-63
Alignment gi|XP_852634.1| PREDICTED: similar to ring finger protein 185 i... 208 6e-54
Alignment gi|XP_860863.1| PREDICTED: similar to ring finger protein 5 iso... 154 1e-37
Alignment gi|XP_543488.2| PREDICTED: similar to ring finger protein 185 i... 76 4e-14
Alignment gi|XP_546732.2| PREDICTED: similar to Peroxisome assembly prote... 58 1e-08
Alignment gi|XP_849155.1| PREDICTED: similar to peroxisome biogenesis fac... 58 1e-08
Alignment gi|XP_546487.2| PREDICTED: similar to CBL E3 ubiquitin protein ... 49 1e-05
>ref|XP_532092.1| PREDICTED: similar to ring finger protein 5 isoform 1 [Canis
familiaris].
Length = 180
Score = 306 bits (783), Expect = 3e-83
Identities = 138/140 (98%), Positives = 138/140 (98%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 83
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 653
SQKPQDPRLKTPPRPQGQRPA ESRGGFQ FGDTGGFHFSFGVGAFPFGFFTTVFNTHEP
Sbjct: 84 SQKPQDPRLKTPPRPQGQRPASESRGGFQSFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 143
Query: 654 FRRGTGVDLGQGHPASSWQD 713
FRRGTGVDLGQGHPASSWQD
Sbjct: 144 FRRGTGVDLGQGHPASSWQD 163
>ref|XP_860897.1| PREDICTED: similar to ring finger protein 5 isoform 4 [Canis
familiaris].
Length = 186
Score = 299 bits (766), Expect = 2e-81
Identities = 138/146 (94%), Positives = 138/146 (94%), Gaps = 6/146 (4%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 83
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 653
SQKPQDPRLKTPPRPQGQRPA ESRGGFQ FGDTGGFHFSFGVGAFPFGFFTTVFNTHEP
Sbjct: 84 SQKPQDPRLKTPPRPQGQRPASESRGGFQSFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 143
Query: 654 FRRG------TGVDLGQGHPASSWQD 713
FRRG TGVDLGQGHPASSWQD
Sbjct: 144 FRRGTAFLSPTGVDLGQGHPASSWQD 169
>ref|XP_860837.1| PREDICTED: similar to ring finger protein 5 isoform 2 [Canis
familiaris].
Length = 145
Score = 238 bits (607), Expect = 7e-63
Identities = 112/122 (91%), Positives = 112/122 (91%)
Frame = +3
Query: 348 CGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQ 527
CG P L WLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQ
Sbjct: 9 CGQRVWPPVL--WLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQ 66
Query: 528 RPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEPFRRGTGVDLGQGHPASSW 707
RPA ESRGGFQ FGDTGGFHFSFGVGAFPFGFFTTVFNTHEPFRRGTGVDLGQGHPASSW
Sbjct: 67 RPASESRGGFQSFGDTGGFHFSFGVGAFPFGFFTTVFNTHEPFRRGTGVDLGQGHPASSW 126
Query: 708 QD 713
QD
Sbjct: 127 QD 128
>ref|XP_852634.1| PREDICTED: similar to ring finger protein 185 isoform 2 [Canis
familiaris].
Length = 192
Score = 208 bits (530), Expect = 6e-54
Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 1/120 (0%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CPVCKAGISR+KV+PLYGRG
Sbjct: 36 TFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRG 95
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSFGVGAFPFGFFTTVFNTHE 650
S QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SFG+GAFPFG F T FN ++
Sbjct: 96 STGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNIND 155
>ref|XP_860863.1| PREDICTED: similar to ring finger protein 5 isoform 3 [Canis
familiaris].
Length = 200
Score = 154 bits (390), Expect = 1e-37
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 83
Query: 474 SQKPQDPR 497
SQKPQDPR
Sbjct: 84 SQKPQDPR 91
Score = 150 bits (380), Expect = 1e-36
Identities = 82/146 (56%), Positives = 89/146 (60%)
Frame = +1
Query: 427 KLGSAEKRLSPSMGEGARSPRIPD*KLHPARRASDRRLRAEGDSSHLATLGAFTSRLVLV 606
K G + +++ P G G++ P+ P DSSHL GAFTS LVLV
Sbjct: 68 KAGISREKVVPLYGRGSQKPQDPR------------------DSSHLVIPGAFTSHLVLV 109
Query: 607 LFPLAFSPPSSIPTSHFVGGQVWIWDRVTRPPAGRTXXXXXXXXXXXXXXXVFELCLPPA 786
LFPLAFSPPSS P SH VG QVWIWDRVTRPPAGRT VFELCL PA
Sbjct: 110 LFPLAFSPPSSTPMSHSVGVQVWIWDRVTRPPAGRTPSSCFSPSSSFSGCSVFELCLLPA 169
Query: 787 HLQPEENQYWGSLLTLPYSRILAAPP 864
HLQPEENQYWGSLLTLPYS L P
Sbjct: 170 HLQPEENQYWGSLLTLPYSWPLPPNP 195
>ref|XP_543488.2| PREDICTED: similar to ring finger protein 185 isoform 1 [Canis
familiaris].
Length = 136
Score = 76.3 bits (186), Expect = 4e-14
Identities = 43/119 (36%), Positives = 54/119 (45%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICL+TA++AV+S+CGHL+CWPCLHQ + +G G
Sbjct: 36 TFECNICLDTAKDAVISLCGHLFCWPCLHQGFQG----------------------FGFG 73
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHE 650
GGFQ SFG+GAFPFG F T FN ++
Sbjct: 74 D------------------------GGFQ---------MSFGIGAFPFGIFATAFNIND 99
>ref|XP_546732.2| PREDICTED: similar to Peroxisome assembly protein 10 (Peroxin-10)
(RING finger protein 69) isoform 1 [Canis familiaris].
Length = 326
Score = 58.2 bits (139), Expect = 1e-08
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 461
C +CLE R + + CGHL+CW C+ QW +T + ECP+C+ +K+V L
Sbjct: 273 CTLCLEERRHSTATPCGHLFCWECITQWCDT---KTECPLCREKFPPQKLVYL 322
>ref|XP_849155.1| PREDICTED: similar to peroxisome biogenesis factor 10 isoform 1
isoform 2 [Canis familiaris].
Length = 346
Score = 58.2 bits (139), Expect = 1e-08
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 461
C +CLE R + + CGHL+CW C+ QW +T + ECP+C+ +K+V L
Sbjct: 293 CTLCLEERRHSTATPCGHLFCWECITQWCDT---KTECPLCREKFPPQKLVYL 342
>ref|XP_546487.2| PREDICTED: similar to CBL E3 ubiquitin protein ligase (Signal
transduction protein CBL) (Proto-oncogene c-CBL)
(Casitas B-lineage lymphoma proto-oncogene) (RING finger
protein 55) [Canis familiaris].
Length = 769
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 294 TFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGR 470
TF+ C IC E ++ + CGHL C CL W E+ E Q CP C+ I + + +
Sbjct: 435 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV--- 489
Query: 471 GSQKPQDPRLKTPPRPQGQRPAP 539
P DPR QG AP
Sbjct: 490 ---DPFDPRGSGSLLRQGAEGAP 509
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,599,928
Number of extensions: 1696268
Number of successful extensions: 9892
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 9701
Number of HSP's successfully gapped: 10
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007923
(1014 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116696.1| E3 ubiquitin-protein ligase RNF5 [Sus scrofa]. 312 2e-85
Alignment gi|XP_001925859.1| PREDICTED: RING finger protein 185 isoform 1... 208 3e-54
Alignment gi|XP_003356175.1| PREDICTED: peroxisome biogenesis factor 10-l... 57 2e-08
Alignment gi|XP_003129980.1| PREDICTED: e3 ubiquitin-protein ligase CBL [... 49 6e-06
Alignment gi|NP_001116681.1| tripartite motif-containing protein 26 [Sus ... 48 1e-05
>ref|NP_001116696.1| E3 ubiquitin-protein ligase RNF5 [Sus scrofa].
Length = 180
Score = 312 bits (799), Expect = 2e-85
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 83
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 653
SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP
Sbjct: 84 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 143
Query: 654 FRRGTGVDLGQGHPASSWQD 713
FRRGTGVDLGQGHPASSWQD
Sbjct: 144 FRRGTGVDLGQGHPASSWQD 163
>ref|XP_001925859.1| PREDICTED: RING finger protein 185 isoform 1 [Sus scrofa].
Length = 192
Score = 208 bits (530), Expect = 3e-54
Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 1/120 (0%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CPVCKAGISR+KV+PLYGRG
Sbjct: 36 TFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRG 95
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSFGVGAFPFGFFTTVFNTHE 650
S QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SFG+GAFPFG F T FN ++
Sbjct: 96 STGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNIND 155
>ref|XP_003356175.1| PREDICTED: peroxisome biogenesis factor 10-like [Sus scrofa].
Length = 326
Score = 56.6 bits (135), Expect = 2e-08
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 461
C +CLE R A + CGHL+CW C+ W +T + ECP+C+ +K+V L
Sbjct: 273 CTLCLEERRHATATPCGHLFCWECITHWSDT---KAECPLCREKFLPQKLVYL 322
>ref|XP_003129980.1| PREDICTED: e3 ubiquitin-protein ligase CBL [Sus scrofa].
Length = 914
Score = 48.5 bits (114), Expect = 6e-06
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 294 TFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGR 470
TF+ C IC E ++ + CGHL C CL W E+ E Q CP C+ I + + +
Sbjct: 376 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV--- 430
Query: 471 GSQKPQDPRLKTPPRPQGQRPAP 539
P DPR QG AP
Sbjct: 431 ---DPFDPRGSGSLLRQGAEGAP 450
>ref|NP_001116681.1| tripartite motif-containing protein 26 [Sus scrofa].
Length = 545
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQK 482
C+ICL+ R+ V CGH++C C R CP+CK ++E + P++ S
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPFTKENIRPVWQLASLV 75
Query: 483 PQDPRLKTPPRPQGQRPAPESR 548
RLK G++P +R
Sbjct: 76 ENIERLKV---DTGRQPGEVAR 94
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,775,788
Number of extensions: 1066415
Number of successful extensions: 6300
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6192
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007923
(1014 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062276.1| E3 ubiquitin-protein ligase RNF5 [Mus musculus]. 305 4e-83
Alignment gi|NP_663330.2| RING finger protein 185 [Mus musculus]. 208 5e-54
Alignment gi|NP_001035866.1| peroxisome biogenesis factor 10 [Mus musculu... 56 4e-08
Alignment gi|NP_031645.2| E3 ubiquitin-protein ligase CBL [Mus musculus]. 49 8e-06
Alignment gi|NP_001020770.2| tripartite motif-containing protein 26 isofo... 49 8e-06
>ref|NP_062276.1| E3 ubiquitin-protein ligase RNF5 [Mus musculus].
Length = 180
Score = 305 bits (781), Expect = 4e-83
Identities = 136/140 (97%), Positives = 137/140 (97%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRP+RQECPVCKAGISREKVVPLYGRG
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVPLYGRG 83
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 653
SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGD GGFHFSFGVGAFPFGFFTTVFN HEP
Sbjct: 84 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDAGGFHFSFGVGAFPFGFFTTVFNAHEP 143
Query: 654 FRRGTGVDLGQGHPASSWQD 713
FRRG GVDLGQGHPASSWQD
Sbjct: 144 FRRGAGVDLGQGHPASSWQD 163
>ref|NP_663330.2| RING finger protein 185 [Mus musculus].
Length = 228
Score = 208 bits (530), Expect = 5e-54
Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 1/120 (0%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CPVCKAGISR+KV+PLYGRG
Sbjct: 72 TFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRG 131
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSFGVGAFPFGFFTTVFNTHE 650
S QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SFG+GAFPFG F T FN ++
Sbjct: 132 STGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNIND 191
>ref|NP_001035866.1| peroxisome biogenesis factor 10 [Mus musculus].
Length = 324
Score = 56.2 bits (134), Expect = 4e-08
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 461
C +CLE R + + CGHL+CW C+ +W T + ECP+C+ +K+V L
Sbjct: 271 CTLCLEERRHSTATPCGHLFCWECITEWCNT---KTECPLCREKFPPQKLVYL 320
>ref|NP_031645.2| E3 ubiquitin-protein ligase CBL [Mus musculus].
Length = 913
Score = 48.5 bits (114), Expect = 8e-06
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 294 TFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGR 470
TF+ C IC E ++ + CGHL C CL W E+ E Q CP C+ I + + +
Sbjct: 375 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV--- 429
Query: 471 GSQKPQDPRLKTPPRPQGQRPAP 539
P DPR QG AP
Sbjct: 430 ---DPFDPRGSGSLLRQGAEGAP 449
>ref|NP_001020770.2| tripartite motif-containing protein 26 isoform a [Mus musculus].
Length = 545
Score = 48.5 bits (114), Expect = 8e-06
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQK 482
C+ICL+ R+ V CGH++C C R CP+CK +E + P++ S
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 483 PQDPRLKTPPRPQGQRPAPESR 548
RLK G++P +R
Sbjct: 76 ENIERLKV---DNGRQPGELAR 94
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,691,505
Number of extensions: 1350675
Number of successful extensions: 7126
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6966
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007923
(1014 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008844.1| E3 ubiquitin-protein ligase RNF5 [Homo sapiens]. 310 1e-84
Alignment gi|NP_689480.2| RING finger protein 185 isoform 1 [Homo sapiens]. 208 6e-54
Alignment gi|NP_001129297.1| RING finger protein 185 isoform 2 [Homo sapi... 76 4e-14
Alignment gi|NP_722540.1| peroxisome biogenesis factor 10 isoform 1 [Homo... 52 7e-07
Alignment gi|NP_002608.1| peroxisome biogenesis factor 10 isoform 2 [Homo... 52 7e-07
Alignment gi|NP_001229712.1| tripartite motif-containing protein 26 [Homo... 49 7e-06
Alignment gi|NP_003440.1| tripartite motif-containing protein 26 [Homo sa... 49 7e-06
Alignment gi|NP_005179.2| E3 ubiquitin-protein ligase CBL [Homo sapiens]. 49 1e-05
>ref|NP_008844.1| E3 ubiquitin-protein ligase RNF5 [Homo sapiens].
Length = 180
Score = 310 bits (794), Expect = 1e-84
Identities = 139/140 (99%), Positives = 139/140 (99%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG
Sbjct: 24 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 83
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHEP 653
SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFN HEP
Sbjct: 84 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNAHEP 143
Query: 654 FRRGTGVDLGQGHPASSWQD 713
FRRGTGVDLGQGHPASSWQD
Sbjct: 144 FRRGTGVDLGQGHPASSWQD 163
>ref|NP_689480.2| RING finger protein 185 isoform 1 [Homo sapiens].
Length = 192
Score = 208 bits (530), Expect = 6e-54
Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 1/120 (0%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICL+TA++AV+S+CGHL+CWPCLHQWLETRP RQ CPVCKAGISR+KV+PLYGRG
Sbjct: 36 TFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRG 95
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFG-DTGGFHFSFGVGAFPFGFFTTVFNTHE 650
S QDPR KTPPRPQGQRP PE+RGGFQ FG GGF SFG+GAFPFG F T FN ++
Sbjct: 96 STGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNIND 155
>ref|NP_001129297.1| RING finger protein 185 isoform 2 [Homo sapiens].
Length = 136
Score = 76.3 bits (186), Expect = 4e-14
Identities = 43/119 (36%), Positives = 54/119 (45%)
Frame = +3
Query: 294 TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRG 473
TFECNICL+TA++AV+S+CGHL+CWPCLHQ + +G G
Sbjct: 36 TFECNICLDTAKDAVISLCGHLFCWPCLHQGFQG----------------------FGFG 73
Query: 474 SQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFTTVFNTHE 650
GGFQ SFG+GAFPFG F T FN ++
Sbjct: 74 D------------------------GGFQ---------MSFGIGAFPFGIFATAFNIND 99
>ref|NP_722540.1| peroxisome biogenesis factor 10 isoform 1 [Homo sapiens].
Length = 346
Score = 52.4 bits (124), Expect = 7e-07
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 461
C +CLE R + CGHL+CW C+ W + + ECP+C+ +K++ L
Sbjct: 293 CTLCLEERRHPTATPCGHLFCWECITAWCSS---KAECPLCREKFPPQKLIYL 342
>ref|NP_002608.1| peroxisome biogenesis factor 10 isoform 2 [Homo sapiens].
Length = 326
Score = 52.4 bits (124), Expect = 7e-07
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPL 461
C +CLE R + CGHL+CW C+ W + + ECP+C+ +K++ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWCSS---KAECPLCREKFPPQKLIYL 322
>ref|NP_001229712.1| tripartite motif-containing protein 26 [Homo sapiens].
Length = 539
Score = 48.9 bits (115), Expect = 7e-06
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQK 482
C+ICL+ R+ V CGH++C C R CP+CK +E + P++ S
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 483 PQDPRLKTPPRPQGQRPAPESR 548
RLK +G++P +R
Sbjct: 76 ENIERLKV---DKGRQPGEVTR 94
>ref|NP_003440.1| tripartite motif-containing protein 26 [Homo sapiens].
Length = 539
Score = 48.9 bits (115), Expect = 7e-06
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 303 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQK 482
C+ICL+ R+ V CGH++C C R CP+CK +E + P++ S
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVWQLASLV 75
Query: 483 PQDPRLKTPPRPQGQRPAPESR 548
RLK +G++P +R
Sbjct: 76 ENIERLKV---DKGRQPGEVTR 94
>ref|NP_005179.2| E3 ubiquitin-protein ligase CBL [Homo sapiens].
Length = 906
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 294 TFE-CNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGR 470
TF+ C IC E ++ + CGHL C CL W E+ E Q CP C+ I + + +
Sbjct: 377 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV--- 431
Query: 471 GSQKPQDPRLKTPPRPQGQRPAP 539
P DPR QG AP
Sbjct: 432 ---DPFDPRGSGSLLRQGAEGAP 451
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,439,705
Number of extensions: 1647187
Number of successful extensions: 9314
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 9111
Number of HSP's successfully gapped: 8
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007923
(1014 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 720 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Plus
Query: 2 ttgtgcaagggcagcaccgcgcaaacctctttgctcccctgccctttggaccaatccttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28036327 ttgtgcaagggcagcaccgcgcaaacctctttgctcccctgccctttggaccaatccttt 28036386
Query: 62 cttttgaccctgtgggattgacaggcattcagacctatagtaattagaaaaccctgaggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28036387 cttttgaccctgtgggattgacaggcattcagacctatagtaattagaaaaccctgaggc 28036446
Query: 122 ctgcccaaagatcgtgggcaggaggcggtttctcgtttgttggggcgcttgtacgtgtgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28036447 ctgcccaaagatcgtgggcaggaggcggtttctcgtttgttggggcgcttgtacgtgtgt 28036506
Query: 182 ttcgggggattaaggggtacacgggggcgaagcagaaccggccatggcagcagcggagga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28036507 ttcgggggattaaggggtacacgggggcgaagcagaaccggccatggcagcagcggagga 28036566
Query: 242 ggaggacgggggccccgaagggccaaaccgcgagcggggcggggcgggcgcgaccttcga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28036567 ggaggacgggggccccgaagggccaaaccgcgagcggggcggggcgggcgcgaccttcga 28036626
Query: 302 atgtaatatatgtctggagactgctcgggaagctgtggtcagcgtgtgtggccacctgta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28036627 atgtaatatatgtctggagactgctcgggaagctgtggtcagcgtgtgtggccacctgta 28036686
Query: 362 ctg 364
|||
Sbjct: 28036687 ctg 28036689
Score = 650 bits (328), Expect = 0.0
Identities = 342/349 (97%)
Strand = Plus / Plus
Query: 666 acaggtgtggatctgggacagggtcacccggcctccagctggcaggactccctcttcttg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038230 acaggtgtggatctgggacagggtcacccggcctccagctggcaggactccctcttcttg 28038289
Query: 726 tttctcgccatcttcttctttttctggctgctcagtatttgagctgtgtctccctcctgc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038290 tttctcgccatcttcttctttttctggctgctcagtatttgagctgtgtctccctcctgc 28038349
Query: 786 ccacctccagccagaggagaatcagtattgggggtccctgctgacccttccttactcccg 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038350 ccacctccagccagaggagaatcagtattgggggtccctgctgacccttccttactcccg 28038409
Query: 846 gatcctcgctgnnnnnnnacacaccctccatttctgtcgcctaaggccaaccctggccac 905
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038410 gatcctcgctgcccccccacacaccctccatttctgtcgcctaaggccaaccctggccac 28038469
Query: 906 tctctgggagggtgtggggaggaggggcaacatctgcaggatgggagaacctttgctctg 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038470 tctctgggagggtgtggggaggaggggcaacatctgcaggatgggagaacctttgctctg 28038529
Query: 966 gacggacggctccctcgagagcaacgtaactcccagctcagggaggggg 1014
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038530 gacggacggctccctcgagagcaacgtaactcccagctcagggaggggg 28038578
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 551 gggattccagccatttggcgacactgggggctttcacttctcgtttggtgttggtgcttt 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038005 gggattccagccatttggcgacactgggggctttcacttctcgtttggtgttggtgcttt 28038064
Query: 611 tccctttggctttttcaccaccgtcttcaatacccacgagccatttcgtcgggggacagg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28038065 tccctttggctttttcaccaccgtcttcaatacccacgagccatttcgtcgggggacagg 28038124
Query: 671 t 671
|
Sbjct: 28038125 t 28038125
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 381 cagtggctggagacacggccagagcggcaagagtgcccagtgtgtaaagctgggatcagc 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28037677 cagtggctggagacacggccagagcggcaagagtgcccagtgtgtaaagctgggatcagc 28037736
Query: 441 agagaaaaggttgtccccctctatgggcgagggagccagaagccccaggatcccag 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28037737 agagaaaaggttgtccccctctatgggcgagggagccagaagccccaggatcccag 28037792
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 494 cagattgaaaactccaccccgcccgcagggccagcgaccggcgcctgagagcagagggg 552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28037872 cagattgaaaactccaccccgcccgcagggccagcgaccggcgcctgagagcagagggg 28037930
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,813,935
Number of extensions: 268
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 5
Length of query: 1014
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 993
Effective length of database: 2,808,413,156
Effective search space: 2788754263908
Effective search space used: 2788754263908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)