Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007924
(1082 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039785.1| smoothelin-like protein 2 [Bos taurus]. 399 e-111
>ref|NP_001039785.1| smoothelin-like protein 2 [Bos taurus].
Length = 458
Score = 399 bits (1025), Expect = e-111
Identities = 223/325 (68%), Positives = 228/325 (70%), Gaps = 8/325 (2%)
Frame = +1
Query: 130 RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL 309
RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL
Sbjct: 11 RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL 70
Query: 310 QAQLERLTRQVEALGLATGMAXXXXXXXXXXXXXXXXXXXXLGTARFASHATFSLSGRSQ 489
Q QLERLTRQVE+LGL TG+A LGTARFASHATFSLSGRSQ
Sbjct: 71 QTQLERLTRQVESLGLTTGLAPAPGTPSPPPAPGVPNRAPRLGTARFASHATFSLSGRSQ 130
Query: 490 SVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRL 669
S+D HDEAS E RRTSNSCI ENGHQPGA GDGPPEA QTIPAPEPPKPRPVSLSLRL
Sbjct: 131 SLDHHDEASELEMRRTSNSCIIENGHQPGADPGDGPPEATQTIPAPEPPKPRPVSLSLRL 190
Query: 670 PHQPVTAVTRVSERFSGEXXXXXXXXXXXXKLG----SPSEATTPW----XXXXXXXXXX 825
PHQPVTAVTRVSERFSGE LG SPSEATTPW
Sbjct: 191 PHQPVTAVTRVSERFSGETSATALSPTSAAILGGLSSSPSEATTPWTPSPSEKNSSLPRS 250
Query: 826 XXXXXXXXXXXRNNDXXXXXXXXXXXXXXXXXXXXXXAHRQGERRRELVRSQTLPRTSGA 1005
N+ AHR GERRRELVRSQTLPRTSGA
Sbjct: 251 LSSSGFGAMTASRNNNSPPLVTPPQSPPSPQPPATTQAHRPGERRRELVRSQTLPRTSGA 310
Query: 1006 QARKALFEKWEQDTAGKGRGETRAK 1080
QARKALFEKWEQDTAGKG+GETRAK
Sbjct: 311 QARKALFEKWEQDTAGKGKGETRAK 335
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.313 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,667,760
Number of extensions: 1170030
Number of successful extensions: 10622
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10091
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007924
(1082 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848449.1| PREDICTED: similar to smoothelin, like [Canis f... 347 1e-95
>ref|XP_848449.1| PREDICTED: similar to smoothelin, like [Canis familiaris].
Length = 709
Score = 347 bits (889), Expect = 1e-95
Identities = 201/327 (61%), Positives = 216/327 (66%), Gaps = 10/327 (3%)
Frame = +1
Query: 130 RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL 309
RTVREALGRYEAALEGAVRALHEDMQGLQRGVE+RVAEALRLAGPLARTVAELQRDNQRL
Sbjct: 266 RTVREALGRYEAALEGAVRALHEDMQGLQRGVERRVAEALRLAGPLARTVAELQRDNQRL 325
Query: 310 QAQLERLTRQVEALGLATGMAXXXXXXXXXXXXXXXXXXXX---LGTARFASHATFSLSG 480
Q+QLERLTRQVEALGL TG A LG+ARFASHATFSLSG
Sbjct: 326 QSQLERLTRQVEALGLGTGQAPAAGSPGTHSPPAAPAAPGRAPRLGSARFASHATFSLSG 385
Query: 481 RSQSVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLS 660
R QSVD DEA ++ R+ S+ I ENGHQPGAG+GDGP EA +T PAPEPP+PRPVSLS
Sbjct: 386 RGQSVDFQDEAGEADARKASDPGIIENGHQPGAGVGDGPAEAAETFPAPEPPRPRPVSLS 445
Query: 661 LRLPHQPVTAVTRVSERFSGEXXXXXXXXXXXXKLG----SPSEATTPW---XXXXXXXX 819
L LPHQPVTA+TR+ E+FSGE LG SPSEATT W
Sbjct: 446 LGLPHQPVTAITRMPEKFSGETSAAALSPTSAAVLGALSLSPSEATTAWTAALSEKNPPA 505
Query: 820 XXXXXXXXXXXXXRNNDXXXXXXXXXXXXXXXXXXXXXXAHRQGERRRELVRSQTLPRTS 999
RN++ RRRELVRSQTLPRTS
Sbjct: 506 PCSSSSYGAASAGRNSNSLPQAMLPQSPPSPPPPATLQ------ARRRELVRSQTLPRTS 559
Query: 1000 GAQARKALFEKWEQDTAGKGRGETRAK 1080
GAQARKALFEKWEQDTAGKGRGE RAK
Sbjct: 560 GAQARKALFEKWEQDTAGKGRGEVRAK 586
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.313 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,316,424
Number of extensions: 1205918
Number of successful extensions: 11245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10805
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007924
(1082 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131937.2| PREDICTED: smoothelin-like protein 2-like [S... 444 e-125
Alignment gi|XP_003133017.1| PREDICTED: smoothelin [Sus scrofa]. 49 6e-06
Alignment gi|XP_001925250.1| PREDICTED: smoothelin isoform 1 [Sus scrofa]. 49 6e-06
>ref|XP_003131937.2| PREDICTED: smoothelin-like protein 2-like [Sus scrofa].
Length = 449
Score = 444 bits (1142), Expect = e-125
Identities = 241/317 (76%), Positives = 241/317 (76%)
Frame = +1
Query: 130 RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL 309
RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL
Sbjct: 11 RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL 70
Query: 310 QAQLERLTRQVEALGLATGMAXXXXXXXXXXXXXXXXXXXXLGTARFASHATFSLSGRSQ 489
QAQLERLTRQVEALGLATGMA LGTARFASHATFSLSGRSQ
Sbjct: 71 QAQLERLTRQVEALGLATGMAPTPGTPSPPPAPSVPDRAPRLGTARFASHATFSLSGRSQ 130
Query: 490 SVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRL 669
SVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRL
Sbjct: 131 SVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRL 190
Query: 670 PHQPVTAVTRVSERFSGEXXXXXXXXXXXXKLGSPSEATTPWXXXXXXXXXXXXXXXXXX 849
PHQPVTAVTRVSERFSGE KLGSPSEATTPW
Sbjct: 191 PHQPVTAVTRVSERFSGETSATALSATSAAKLGSPSEATTPWTPSPSEKNSSLSRSLSTL 250
Query: 850 XXXRNNDXXXXXXXXXXXXXXXXXXXXXXAHRQGERRRELVRSQTLPRTSGAQARKALFE 1029
RNND AHRQGERRRELVRSQTLPRTSGAQARKALFE
Sbjct: 251 TASRNND-SPPLVTPPQSPPSPQPPATTQAHRQGERRRELVRSQTLPRTSGAQARKALFE 309
Query: 1030 KWEQDTAGKGRGETRAK 1080
KWEQDTAGKGR ETRAK
Sbjct: 310 KWEQDTAGKGRSETRAK 326
>ref|XP_003133017.1| PREDICTED: smoothelin [Sus scrofa].
Length = 937
Score = 48.5 bits (114), Expect = 6e-06
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1
Query: 943 RQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGRGETRA 1077
RQ E+++EL+++Q+LP+TS +QARKA+ EK E++ A G RA
Sbjct: 738 RQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRA 782
>ref|XP_001925250.1| PREDICTED: smoothelin isoform 1 [Sus scrofa].
Length = 912
Score = 48.5 bits (114), Expect = 6e-06
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1
Query: 943 RQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGRGETRA 1077
RQ E+++EL+++Q+LP+TS +QARKA+ EK E++ A G RA
Sbjct: 738 RQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGAAGSPGGPRA 782
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.313 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,458,854
Number of extensions: 764902
Number of successful extensions: 7143
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6746
Number of HSP's successfully gapped: 3
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007924
(1082 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808444.1| smoothelin-like protein 2 [Mus musculus]. 345 4e-95
Alignment gi|NP_038898.2| smoothelin [Mus musculus]. 49 9e-06
Alignment gi|NP_001152756.1| smoothelin [Mus musculus]. 49 9e-06
>ref|NP_808444.1| smoothelin-like protein 2 [Mus musculus].
Length = 456
Score = 345 bits (885), Expect = 4e-95
Identities = 203/324 (62%), Positives = 215/324 (66%), Gaps = 8/324 (2%)
Frame = +1
Query: 133 TVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRLQ 312
TVREALGRYEAALEGAVRALHEDMQGLQRGVE+RVAEALRLAGPLARTVAELQRDNQRLQ
Sbjct: 12 TVREALGRYEAALEGAVRALHEDMQGLQRGVERRVAEALRLAGPLARTVAELQRDNQRLQ 71
Query: 313 AQLERLTRQVEALGLATGMAXXXXXXXXXXXXXXXXXXXXLGTARFASHATFSLSGRSQS 492
AQLERLTRQVEALGLATG++ LGTARF+SHATFSLSGRS S
Sbjct: 72 AQLERLTRQVEALGLATGVSPAPGTPSPPPAATVTDRAPRLGTARFSSHATFSLSGRSPS 131
Query: 493 VDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRLP 672
V +HDEAS E RR SNSCI ENGHQ AG +G E QT A EPP+PRPVSLSLR+P
Sbjct: 132 V-EHDEASDLEVRRASNSCILENGHQLDAGPANGSSEV-QTSSAQEPPRPRPVSLSLRMP 189
Query: 673 HQPVTAVTRVSERFSGEXXXXXXXXXXXXKLG----SPSEATTPWXXXXXXXXXXXXXXX 840
HQPVTAVTRVSE+FSGE +G SPSEA +PW
Sbjct: 190 HQPVTAVTRVSEKFSGETSASALSPTSAAIVGGFTPSPSEAISPWTPSPTEKSSSFTRSL 249
Query: 841 XXXXXXR----NNDXXXXXXXXXXXXXXXXXXXXXXAHRQGERRRELVRSQTLPRTSGAQ 1008
A RQGERRRELVRSQTLPRTSGAQ
Sbjct: 250 SGSGYGAVTAGKRKDSPPLVTPPQSPPSSQPPAMTQAPRQGERRRELVRSQTLPRTSGAQ 309
Query: 1009 ARKALFEKWEQDTAGKGRGETRAK 1080
ARKALFEKWEQDTA KG+GETRAK
Sbjct: 310 ARKALFEKWEQDTASKGKGETRAK 333
>ref|NP_038898.2| smoothelin [Mus musculus].
Length = 921
Score = 48.5 bits (114), Expect = 9e-06
Identities = 21/44 (47%), Positives = 34/44 (77%)
Frame = +1
Query: 943 RQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGRGETR 1074
RQ E+++EL+++Q+LP+TS +QARKA+ EK E++ + G G R
Sbjct: 747 RQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGGPGTPR 790
>ref|NP_001152756.1| smoothelin [Mus musculus].
Length = 921
Score = 48.5 bits (114), Expect = 9e-06
Identities = 21/44 (47%), Positives = 34/44 (77%)
Frame = +1
Query: 943 RQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGRGETR 1074
RQ E+++EL+++Q+LP+TS +QARKA+ EK E++ + G G R
Sbjct: 747 RQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGGPGTPR 790
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.313 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,963,664
Number of extensions: 939117
Number of successful extensions: 8022
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7596
Number of HSP's successfully gapped: 4
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007924
(1082 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001108446.1| smoothelin-like protein 2 isoform 1 [Homo sa... 358 5e-99
Alignment gi|NP_940903.2| smoothelin-like protein 2 isoform 2 [Homo sapie... 184 1e-46
>ref|NP_001108446.1| smoothelin-like protein 2 isoform 1 [Homo sapiens].
Length = 461
Score = 358 bits (919), Expect = 5e-99
Identities = 205/329 (62%), Positives = 222/329 (67%), Gaps = 12/329 (3%)
Frame = +1
Query: 130 RTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRL 309
RTVREALGRYEAALEGAVRALHEDM+GLQRGVE+RVAEA+RLAGPLARTVA+LQRDNQRL
Sbjct: 11 RTVREALGRYEAALEGAVRALHEDMRGLQRGVERRVAEAMRLAGPLARTVADLQRDNQRL 70
Query: 310 QAQLERLTRQVEALGLATGMA---XXXXXXXXXXXXXXXXXXXXLGTARFASHATFSLSG 480
QAQLERLTRQVEALGLA+GM+ LG+ARFASHATFSLSG
Sbjct: 71 QAQLERLTRQVEALGLASGMSPVPGTPGTPSPPPAPGVPDRAPRLGSARFASHATFSLSG 130
Query: 481 RSQSVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLS 660
R QS+D HDEAS SE R+TSNSCI ENGHQPGAG GDGPPE Q AP+PP+PRPVSLS
Sbjct: 131 RGQSLD-HDEASESEMRKTSNSCIMENGHQPGAGPGDGPPEIAQNFSAPDPPRPRPVSLS 189
Query: 661 LRLPHQPVTAVTRVSERFSGEXXXXXXXXXXXXKLG----SPSEATTPW----XXXXXXX 816
LRLPHQPVTA+TRVS+RFSGE LG SPSE TPW
Sbjct: 190 LRLPHQPVTAITRVSDRFSGETSAAALSPMSAATLGGLNPSPSEVITPWTPSPSEKNSSF 249
Query: 817 XXXXXXXXXXXXXXRNNDXXXXXXXXXXXXXXXXXXXXXXAHRQGERRRELVRSQTLPRT 996
+ HRQGERRRELVRSQTLPRT
Sbjct: 250 TWSVPSSGYGAVTASKHSNSPPLVTPPQSPVSPQPPAITQVHRQGERRRELVRSQTLPRT 309
Query: 997 SGAQARKALFEKWEQDT-AGKGRGETRAK 1080
S AQARKALFEKWEQ+T AGKG+GE RA+
Sbjct: 310 SEAQARKALFEKWEQETAAGKGKGEARAR 338
>ref|NP_940903.2| smoothelin-like protein 2 isoform 2 [Homo sapiens].
Length = 317
Score = 184 bits (467), Expect = 1e-46
Identities = 104/193 (53%), Positives = 113/193 (58%), Gaps = 9/193 (4%)
Frame = +1
Query: 529 RRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRLPHQPVTAVTRVSE 708
R+TSNSCI ENGHQPGAG GDGPPE Q AP+PP+PRPVSLSLRLPHQPVTA+TRVS+
Sbjct: 2 RKTSNSCIMENGHQPGAGPGDGPPEIAQNFSAPDPPRPRPVSLSLRLPHQPVTAITRVSD 61
Query: 709 RFSGEXXXXXXXXXXXXKLG----SPSEATTPW----XXXXXXXXXXXXXXXXXXXXXRN 864
RFSGE LG SPSE TPW
Sbjct: 62 RFSGETSAAALSPMSAATLGGLNPSPSEVITPWTPSPSEKNSSFTWSVPSSGYGAVTASK 121
Query: 865 NDXXXXXXXXXXXXXXXXXXXXXXAHRQGERRRELVRSQTLPRTSGAQARKALFEKWEQD 1044
+ HRQGERRRELVRSQTLPRTS AQARKALFEKWEQ+
Sbjct: 122 HSNSPPLVTPPQSPVSPQPPAITQVHRQGERRRELVRSQTLPRTSEAQARKALFEKWEQE 181
Query: 1045 T-AGKGRGETRAK 1080
T AGKG+GE RA+
Sbjct: 182 TAAGKGKGEARAR 194
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.313 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,293,609
Number of extensions: 1162511
Number of successful extensions: 10422
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9945
Number of HSP's successfully gapped: 4
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007924
(1082 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 464 e-128
>Sscrofa_Chr12
|| Length = 63588571
Score = 464 bits (234), Expect = e-128
Identities = 234/234 (100%)
Strand = Plus / Minus
Query: 578 caggtcttggtgatggacccccagaggctccccaaaccatcccagcaccagagcccccca 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52593718 caggtcttggtgatggacccccagaggctccccaaaccatcccagcaccagagcccccca 52593659
Query: 638 agcctcgccccgtgagcctgtccttgcgcctgcctcaccagccagtcacggccgtcacgc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52593658 agcctcgccccgtgagcctgtccttgcgcctgcctcaccagccagtcacggccgtcacgc 52593599
Query: 698 gcgtctccgagaggttctctggggagacctcggccacagctctctcggccacgtctgctg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52593598 gcgtctccgagaggttctctggggagacctcggccacagctctctcggccacgtctgctg 52593539
Query: 758 ccaaactggggagccccagcgaggccaccacaccctggactcccagtcccagtg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52593538 ccaaactggggagccccagcgaggccaccacaccctggactcccagtcccagtg 52593485
Score = 365 bits (184), Expect = 3e-98
Identities = 187/188 (99%)
Strand = Plus / Minus
Query: 869 acagcagcccacctctggtgacgccgccccagtcgcccccatccccgcagccgccagcca 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52591749 acagcagcccacctctggtgacgccgccccagtcgcccccatccccgcagccgccagcca 52591690
Query: 929 cgacgcaggcccatcggcagggggagcgtcgccgggagctggtgaggtcgcagactctgc 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52591689 cgacgcaggcccatcggcagggggagcgtcgccgggagctggtgaggtcgcagactctgc 52591630
Query: 989 cccgaacgtcgggggcacaggcccggaaggcgttgtttgagaaatgggagcaagatacag 1048
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 52591629 cccgaacgtcgggggcacaggcccggaaggcgttgtttgagaaatgggagcaggatacag 52591570
Query: 1049 cgggcaag 1056
||||||||
Sbjct: 52591569 cgggcaag 52591562
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 192 acacgaggacatgcaggggctgcagcgcggcgtggagcagcgcgtggccgaggcgctgcg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52601605 acacgaggacatgcaggggctgcagcgcggcgtggagcagcgcgtggccgaggcgctgcg 52601546
Query: 252 cctggccgggccgctggcgcgtacggtggccgaactgcagcgcgacaaccagcggctaca 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52601545 cctggccgggccgctggcgcgtacggtggccgaactgcagcgcgacaaccagcggctaca 52601486
Query: 312 ggcgcagctcgagcgcttgacgcgccaggtggaagctttgggcttggcgaccgggatg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52601485 ggcgcagctcgagcgcttgacgcgccaggtggaagctttgggcttggcgaccgggatg 52601428
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 1 ccggccccgggctgccagtcgctgcacggagctgtggagctcgactgcgtttcccggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52601796 ccggccccgggctgccagtcgctgcacggagctgtggagctcgactgcgtttcccggacc 52601737
Query: 61 agacccgctctcccggagacccgtgccccctgcccggccatggagcctgcccccgacgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52601736 agacccgctctcccggagacccgtgccccctgcccggccatggagcctgcccccgacgcc 52601677
Query: 121 gagg 124
||||
Sbjct: 52601676 gagg 52601673
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 487 cagagcgtggatcaacatgacgaggccagtgggtctgagaccagaaggacctcaaactcg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52594293 cagagcgtggatcaacatgacgaggccagtgggtctgagaccagaaggacctcaaactcg 52594234
Query: 547 tgcatcttcgagaatgggcaccagcctggggcaggt 582
||||||||||||||||||||||||||||||||||||
Sbjct: 52594233 tgcatcttcgagaatgggcaccagcctggggcaggt 52594198
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 811 gagaagaattcttccctctcaaggtctttgtccacgctgacagccagcaggaacaacgac 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52592512 gagaagaattcttccctctcaaggtctttgtccacgctgacagccagcaggaacaacgac 52592453
Query: 871 ag 872
||
Sbjct: 52592452 ag 52592451
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 434 tgggcactgcgcgcttcgccagccacgccaccttctcgctgtccggccgcagccag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52601363 tgggcactgcgcgcttcgccagccacgccaccttctcgctgtccggccgcagccag 52601308
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,889,576
Number of extensions: 143
Number of successful extensions: 143
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 7
Length of query: 1082
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1061
Effective length of database: 2,808,413,156
Effective search space: 2979726358516
Effective search space used: 2979726358516
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)