Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007925
(978 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069709.1| abl-interactor 1 [Bos taurus]. 462 e-130
Alignment gi|NP_001094641.1| abl interactor 2 [Bos taurus]. 352 4e-97
Alignment gi|NP_001076923.1| ABI gene family member 3 [Bos taurus]. 191 8e-49
>ref|NP_001069709.1| abl-interactor 1 [Bos taurus].
Length = 355
Score = 462 bits (1190), Expect = e-130
Identities = 237/267 (88%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVA+YCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVAEYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
>ref|NP_001094641.1| abl interactor 2 [Bos taurus].
Length = 475
Score = 352 bits (902), Expect = 4e-97
Identities = 189/277 (68%), Positives = 209/277 (75%), Gaps = 10/277 (3%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIP G+RAL +SY NL RVADYCENNYIQ+ DK++ALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAY IN LANNVLQ+LDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPAN+ERPVRYIRKPIDYT+LDD+GHGVK + Q + G L RT
Sbjct: 121 THKIIAPANLERPVRYIRKPIDYTILDDIGHGVK------VSTQNMKMGGLPRTTPPTQK 174
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPAR--LGSQHSPGRTASLNQRPRT 835
MSG+GTLGR++PY+TLEPV+PP VPNDY+ SP R SQ SP RTAS+NQR RT
Sbjct: 175 PPSPPMSGKGTLGRHSPYRTLEPVRPPVVPNDYVPSPTRNMAPSQQSPVRTASVNQRNRT 234
Query: 836 H--------XXXXXXXXXXXXXXXXXXXIPIAVPTPS 922
+ +PIAVPTPS
Sbjct: 235 YSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPS 271
>ref|NP_001076923.1| ABI gene family member 3 [Bos taurus].
Length = 359
Score = 191 bits (485), Expect = 8e-49
Identities = 107/227 (47%), Positives = 150/227 (66%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQ L E EIP+G+ AL ++ +L RVADYCE+NY+QATDKRKALEET A+TTQ+LAS
Sbjct: 1 MAELQQLQEFEIPTGREALRGNHSSLLRVADYCEDNYVQATDKRKALEETMAFTTQALAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQ+ LA + L++LD+QA+ LR++E+ ++ + Q V++H EKVARREIG L T +
Sbjct: 61 VAYQVGNLAGHTLRMLDLQAAALRQVEARVSTLGQMVNMHMEKVARREIGTLATVQRLPP 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
KIIAP ++ Y R+P++++ LDD+GHG+K L + Q +RTGTLSR +
Sbjct: 121 GQKIIAPESLPHLTPYYRRPLNFSCLDDIGHGIKDL-----STQLSRTGTLSRKS----- 170
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPG 802
TLGR + EPV+ P VP+ +++ + S S G
Sbjct: 171 IKAPATPASATLGRAP--RIPEPVQAPVVPDGRLSAASSASSLASAG 215
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,319,183
Number of extensions: 952362
Number of successful extensions: 3701
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3693
Number of HSP's successfully gapped: 3
Length of query: 326
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 224
Effective length of database: 14,306,398
Effective search space: 3204633152
Effective search space used: 3204633152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007925
(978 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858231.1| PREDICTED: similar to abl-interactor 1 isoform ... 462 e-135
Alignment gi|XP_858111.1| PREDICTED: similar to abl-interactor 1 isoform ... 462 e-135
Alignment gi|XP_849209.1| PREDICTED: similar to Abl-interactor 1 (Abelson... 462 e-132
Alignment gi|XP_858151.1| PREDICTED: similar to abl-interactor 1 isoform ... 445 e-131
Alignment gi|XP_857986.1| PREDICTED: similar to abl-interactor 1 isoform ... 462 e-130
Alignment gi|XP_857866.1| PREDICTED: similar to abl-interactor 1 isoform ... 445 e-130
Alignment gi|XP_857545.1| PREDICTED: similar to abl-interactor 1 isoform ... 445 e-130
Alignment gi|XP_858070.1| PREDICTED: similar to abl-interactor 1 isoform ... 445 e-130
Alignment gi|XP_857464.1| PREDICTED: similar to abl-interactor 1 isoform ... 445 e-130
Alignment gi|XP_857788.1| PREDICTED: similar to Abl-interactor 1 (Abelson... 446 e-125
>ref|XP_858231.1| PREDICTED: similar to abl-interactor 1 isoform b isoform 20 [Canis
familiaris].
Length = 480
Score = 462 bits (1189), Expect(2) = e-135
Identities = 237/267 (88%), Positives = 237/267 (88%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 38.5 bits (88), Expect(2) = e-135
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT+GPA PGSAPGSQYGT
Sbjct: 268 PPTVGPA-PGSAPGSQYGT 285
>ref|XP_858111.1| PREDICTED: similar to abl-interactor 1 isoform c isoform 18 [Canis
familiaris].
Length = 451
Score = 462 bits (1189), Expect(2) = e-135
Identities = 237/267 (88%), Positives = 237/267 (88%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 38.5 bits (88), Expect(2) = e-135
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT+GPA PGSAPGSQYGT
Sbjct: 268 PPTVGPA-PGSAPGSQYGT 285
>ref|XP_849209.1| PREDICTED: similar to Abl-interactor 1 (Abelson interactor 1)
(Abi-1) (Spectrin SH3 domain binding protein 1) (Eps8
SH3 domain binding protein) (Eps8 binding protein)
(e3B1) (Nap1 binding protein) (Nap1BP) (Abl binding
protein 4) (AblBP4) isoform 1 [Canis familiaris].
Length = 507
Score = 462 bits (1189), Expect(2) = e-132
Identities = 237/267 (88%), Positives = 237/267 (88%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 29.6 bits (65), Expect(2) = e-132
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 943 APGSAPGSQYGT 978
APGSAPGSQYGT
Sbjct: 301 APGSAPGSQYGT 312
>ref|XP_858151.1| PREDICTED: similar to abl-interactor 1 isoform d isoform 19 [Canis
familiaris].
Length = 476
Score = 445 bits (1144), Expect(2) = e-131
Identities = 232/267 (86%), Positives = 232/267 (86%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 42.0 bits (97), Expect(2) = e-131
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT+GP +PGSAPGSQYGT
Sbjct: 263 PPTVGPVSPGSAPGSQYGT 281
>ref|XP_857986.1| PREDICTED: similar to abl-interactor 1 isoform c isoform 15 [Canis
familiaris].
Length = 393
Score = 462 bits (1189), Expect = e-130
Identities = 237/267 (88%), Positives = 237/267 (88%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
>ref|XP_857866.1| PREDICTED: similar to abl-interactor 1 isoform d isoform 12 [Canis
familiaris].
Length = 499
Score = 445 bits (1144), Expect(2) = e-130
Identities = 232/267 (86%), Positives = 232/267 (86%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 38.5 bits (88), Expect(2) = e-130
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT+GPA PGSAPGSQYGT
Sbjct: 263 PPTVGPA-PGSAPGSQYGT 280
>ref|XP_857545.1| PREDICTED: similar to abl-interactor 1 isoform d isoform 4 [Canis
familiaris].
Length = 475
Score = 445 bits (1144), Expect(2) = e-130
Identities = 232/267 (86%), Positives = 232/267 (86%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 38.5 bits (88), Expect(2) = e-130
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT+GPA PGSAPGSQYGT
Sbjct: 263 PPTVGPA-PGSAPGSQYGT 280
>ref|XP_858070.1| PREDICTED: similar to abl-interactor 1 isoform c isoform 17 [Canis
familiaris].
Length = 446
Score = 445 bits (1144), Expect(2) = e-130
Identities = 232/267 (86%), Positives = 232/267 (86%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 38.5 bits (88), Expect(2) = e-130
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT+GPA PGSAPGSQYGT
Sbjct: 263 PPTVGPA-PGSAPGSQYGT 280
>ref|XP_857464.1| PREDICTED: similar to abl-interactor 1 isoform d isoform 2 [Canis
familiaris].
Length = 346
Score = 445 bits (1144), Expect(2) = e-130
Identities = 232/267 (86%), Positives = 232/267 (86%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 38.5 bits (88), Expect(2) = e-130
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT+GPA PGSAPGSQYGT
Sbjct: 263 PPTVGPA-PGSAPGSQYGT 280
>ref|XP_857788.1| PREDICTED: similar to Abl-interactor 1 (Abelson interactor 1)
(Abi-1) (Spectrin SH3 domain binding protein 1) (Eps8
SH3 domain binding protein) (Eps8 binding protein)
(e3B1) (Nap1 binding protein) (Nap1BP) (Abl binding
protein 4) (AblBP4) isoform 10 [Canis familiaris].
Length = 427
Score = 446 bits (1146), Expect = e-125
Identities = 233/272 (85%), Positives = 234/272 (86%), Gaps = 5/272 (1%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQA DKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQAADKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVK---WLK--AKHGNNQPARTGTLSRTN 646
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVK W+ HGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKGYCWISWPVNHGNNQPARTGTLSRTN 180
Query: 647 XXXXXXXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQR 826
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQR
Sbjct: 181 PPTQKPPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQR 240
Query: 827 PRTHXXXXXXXXXXXXXXXXXXXIPIAVPTPS 922
PRTH IPIAVPTPS
Sbjct: 241 PRTHSGSSGGSGSRENSGSSSIGIPIAVPTPS 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,905,486
Number of extensions: 977337
Number of successful extensions: 3834
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3795
Number of HSP's successfully gapped: 32
Length of query: 326
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 223
Effective length of database: 15,440,896
Effective search space: 3443319808
Effective search space used: 3443319808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007925
(978 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133645.2| PREDICTED: abl interactor 2-like [Sus scrofa]. 287 5e-78
Alignment gi|XP_003130806.2| PREDICTED: LOW QUALITY PROTEIN: abl interact... 212 3e-58
Alignment gi|XP_003358134.1| PREDICTED: ABI gene family member 3-like iso... 185 4e-47
Alignment gi|XP_003358136.1| PREDICTED: ABI gene family member 3-like iso... 184 5e-47
Alignment gi|XP_003358135.1| PREDICTED: ABI gene family member 3-like iso... 180 9e-46
Alignment gi|XP_003360667.1| PREDICTED: hypothetical protein LOC100620984... 71 1e-12
>ref|XP_003133645.2| PREDICTED: abl interactor 2-like [Sus scrofa].
Length = 444
Score = 287 bits (735), Expect = 5e-78
Identities = 156/240 (65%), Positives = 176/240 (73%), Gaps = 10/240 (4%)
Frame = +2
Query: 233 IQATDKRKALEETKAYTTQSLASVAYQINALANNVLQLLDIQASQLRRMESSINHISQTV 412
+++ DK++ALEETKAYTTQSLASVAY IN LANNVLQ+LDIQASQLRRMESSINHISQTV
Sbjct: 34 VESADKQRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTV 93
Query: 413 DIHKEKVARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLK 592
DIHKEKVARREIGILTTNKNTSRTHKIIAPAN+ERPVRYIRKPIDYT+LDD+GHGVK
Sbjct: 94 DIHKEKVARREIGILTTNKNTSRTHKIIAPANLERPVRYIRKPIDYTILDDIGHGVK--- 150
Query: 593 AKHGNNQPARTGTLSRTNXXXXXXXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSP 772
+ Q + G L RT MSG+GTLGR++PY+TLEPV+PP VPNDY+ SP
Sbjct: 151 ---VSTQNMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPYRTLEPVRPPVVPNDYVPSP 207
Query: 773 AR--LGSQHSPGRTASLNQRPRTH--------XXXXXXXXXXXXXXXXXXXIPIAVPTPS 922
R SQ SP RTAS+NQR RT+ +PIAVPTPS
Sbjct: 208 TRNMAPSQQSPVRTASVNQRNRTYSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPS 267
>ref|XP_003130806.2| PREDICTED: LOW QUALITY PROTEIN: abl interactor 1 [Sus scrofa].
Length = 379
Score = 212 bits (540), Expect(2) = 3e-58
Identities = 105/137 (76%), Positives = 106/137 (77%)
Frame = +2
Query: 509 MERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXXXXXXXMSGR 688
MERP+RYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN MSGR
Sbjct: 1 MERPIRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQKPPSPPMSGR 60
Query: 689 GTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHXXXXXXXXXX 868
GTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 61 GTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSR 120
Query: 869 XXXXXXXXXIPIAVPTP 919
IPIAV P
Sbjct: 121 ENSGSSSIGIPIAVXXP 137
Score = 31.2 bits (69), Expect(2) = 3e-58
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 940 AAPGSAPGSQYGT 978
AAPGSAPGSQYGT
Sbjct: 172 AAPGSAPGSQYGT 184
>ref|XP_003358134.1| PREDICTED: ABI gene family member 3-like isoform 1 [Sus scrofa].
Length = 357
Score = 185 bits (469), Expect = 4e-47
Identities = 106/227 (46%), Positives = 144/227 (63%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQ L E EIP+ + AL ++ L RVADYCE+NY+QATDKRKALEET A+ TQ+LAS
Sbjct: 1 MAELQQLQEFEIPTAREALRGNHSALLRVADYCEDNYVQATDKRKALEETMAFATQALAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQ+ LA N L++LD+QA+ L ++E+ + + V++H EKVARREIG L T +
Sbjct: 61 VAYQVGNLAGNTLRMLDLQAAALWQVEARASILGLMVNMHMEKVARREIGTLATVQRLPP 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
+ KIIAP ++ Y RKP+++ LDD+GHG+ K + Q +RTGTLSR +
Sbjct: 121 SQKIIAPESLPPLTPYYRKPLNFGCLDDIGHGI-----KDSSTQLSRTGTLSRKS----- 170
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPG 802
TLGR + EPV+PP VPN +++ + S S G
Sbjct: 171 IKAPAAPASATLGRAP--RIPEPVQPPVVPNGKLSAASSASSLASAG 215
>ref|XP_003358136.1| PREDICTED: ABI gene family member 3-like isoform 3 [Sus scrofa].
Length = 359
Score = 184 bits (468), Expect = 5e-47
Identities = 108/229 (47%), Positives = 144/229 (62%), Gaps = 2/229 (0%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQ L E EIP+ + AL ++ L RVADYCE+NY+QATDKRKALEET A+ TQ+LAS
Sbjct: 1 MAELQQLQEFEIPTAREALRGNHSALLRVADYCEDNYVQATDKRKALEETMAFATQALAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSIN--HISQTVDIHKEKVARREIGILTTNKNT 475
VAYQ+ LA N L++LD+QA+ L + + N +SQ V++H EKVARREIG L T +
Sbjct: 61 VAYQVGNLAGNTLRMLDLQAAALGHLTVTSNPVSVSQMVNMHMEKVARREIGTLATVQRL 120
Query: 476 SRTHKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXX 655
+ KIIAP ++ Y RKP+++ LDD+GHG+ K + Q +RTGTLSR +
Sbjct: 121 PPSQKIIAPESLPPLTPYYRKPLNFGCLDDIGHGI-----KDSSTQLSRTGTLSRKS--- 172
Query: 656 XXXXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPG 802
TLGR + EPV+PP VPN +++ + S S G
Sbjct: 173 --IKAPAAPASATLGRAP--RIPEPVQPPVVPNGKLSAASSASSLASAG 217
>ref|XP_003358135.1| PREDICTED: ABI gene family member 3-like isoform 2 [Sus scrofa].
Length = 351
Score = 180 bits (457), Expect = 9e-46
Identities = 106/227 (46%), Positives = 143/227 (62%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQ L E EIP+ + AL ++ L RVADYCE+NY+QATDKRKALEET A+ TQ+LAS
Sbjct: 1 MAELQQLQEFEIPTAREALRGNHSALLRVADYCEDNYVQATDKRKALEETMAFATQALAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQ+ LA N L++LD+QA+ L ++E ++ V++H EKVARREIG L T +
Sbjct: 61 VAYQVGNLAGNTLRMLDLQAAALWQVE------ARMVNMHMEKVARREIGTLATVQRLPP 114
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
+ KIIAP ++ Y RKP+++ LDD+GHG+ K + Q +RTGTLSR +
Sbjct: 115 SQKIIAPESLPPLTPYYRKPLNFGCLDDIGHGI-----KDSSTQLSRTGTLSRKS----- 164
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPG 802
TLGR + EPV+PP VPN +++ + S S G
Sbjct: 165 IKAPAAPASATLGRAP--RIPEPVQPPVVPNGKLSAASSASSLASAG 209
>ref|XP_003360667.1| PREDICTED: hypothetical protein LOC100620984 [Sus scrofa].
Length = 88
Score = 70.9 bits (172), Expect = 1e-12
Identities = 33/39 (84%), Positives = 35/39 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQ 238
MAELQMLLEEEIP G+RAL +SY NL RVADYCENNYIQ
Sbjct: 1 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQ 39
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,366,505
Number of extensions: 609838
Number of successful extensions: 2429
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2412
Number of HSP's successfully gapped: 7
Length of query: 326
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,879,129
Effective search space: 2015562283
Effective search space used: 2015562283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007925
(978 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070658.1| abl interactor 1 isoform 1 [Mus musculus]. 462 e-136
Alignment gi|NP_666106.1| abl interactor 1 isoform 2 [Mus musculus]. 445 e-131
Alignment gi|NP_031406.2| abl interactor 1 isoform 3 [Mus musculus]. 445 e-129
Alignment gi|NP_001070660.1| abl interactor 1 isoform 4 [Mus musculus]. 445 e-129
Alignment gi|NP_001070661.1| abl interactor 1 isoform 5 [Mus musculus]. 445 e-125
Alignment gi|NP_001185500.1| abl interactor 2 isoform 2 [Mus musculus]. 361 e-100
Alignment gi|NP_001185499.1| abl interactor 2 isoform 1 [Mus musculus]. 361 e-100
Alignment gi|NP_937760.1| abl interactor 2 isoform 3 [Mus musculus]. 351 4e-97
Alignment gi|NP_079935.1| ABI gene family member 3 isoform 1 [Mus musculu... 181 1e-45
Alignment gi|NP_001156936.1| ABI gene family member 3 isoform 2 [Mus musc... 121 7e-28
>ref|NP_001070658.1| abl interactor 1 isoform 1 [Mus musculus].
Length = 481
Score = 462 bits (1190), Expect(2) = e-136
Identities = 237/267 (88%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
+SGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 42.0 bits (97), Expect(2) = e-136
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT GPAAPG+APGSQYGT
Sbjct: 268 PPTAGPAAPGAAPGSQYGT 286
>ref|NP_666106.1| abl interactor 1 isoform 2 [Mus musculus].
Length = 476
Score = 445 bits (1145), Expect(2) = e-131
Identities = 232/267 (86%), Positives = 233/267 (87%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
+SGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 42.0 bits (97), Expect(2) = e-131
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT GPAAPG+APGSQYGT
Sbjct: 263 PPTAGPAAPGAAPGSQYGT 281
>ref|NP_031406.2| abl interactor 1 isoform 3 [Mus musculus].
Length = 475
Score = 445 bits (1145), Expect(2) = e-129
Identities = 232/267 (86%), Positives = 233/267 (87%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
+SGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 35.8 bits (81), Expect(2) = e-129
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT GPA PG+APGSQYGT
Sbjct: 263 PPTAGPA-PGAAPGSQYGT 280
>ref|NP_001070660.1| abl interactor 1 isoform 4 [Mus musculus].
Length = 446
Score = 445 bits (1145), Expect(2) = e-129
Identities = 232/267 (86%), Positives = 233/267 (87%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
+SGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 35.8 bits (81), Expect(2) = e-129
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPT GPA PG+APGSQYGT
Sbjct: 263 PPTAGPA-PGAAPGSQYGT 280
>ref|NP_001070661.1| abl interactor 1 isoform 5 [Mus musculus].
Length = 388
Score = 445 bits (1145), Expect = e-125
Identities = 232/267 (86%), Positives = 233/267 (87%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
+SGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPVSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
>ref|NP_001185500.1| abl interactor 2 isoform 2 [Mus musculus].
Length = 480
Score = 361 bits (926), Expect = e-100
Identities = 191/277 (68%), Positives = 211/277 (76%), Gaps = 10/277 (3%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIP G+RAL +SY NL RVADYCENNYIQ+ DK++ALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSPDKQRALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAY IN LANNVLQ+LDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPAN+ERPVRYIRKPIDYT+LDD+GHGVKWL + Q + G L RT
Sbjct: 121 THKIIAPANLERPVRYIRKPIDYTILDDIGHGVKWLLRFKVSTQNMKMGGLPRTTPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPAR--LGSQHSPGRTASLNQRPRT 835
MSG+GTLGR++PY+TLEPV+PP VPNDY+ SP R SQ SP RTAS+NQR RT
Sbjct: 181 PPSPPMSGKGTLGRHSPYRTLEPVRPPVVPNDYVPSPTRNMAPSQQSPVRTASVNQRNRT 240
Query: 836 H--------XXXXXXXXXXXXXXXXXXXIPIAVPTPS 922
+ +PIAVPTPS
Sbjct: 241 YSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPS 277
>ref|NP_001185499.1| abl interactor 2 isoform 1 [Mus musculus].
Length = 487
Score = 361 bits (926), Expect = e-100
Identities = 191/277 (68%), Positives = 211/277 (76%), Gaps = 10/277 (3%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIP G+RAL +SY NL RVADYCENNYIQ+ DK++ALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSPDKQRALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAY IN LANNVLQ+LDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPAN+ERPVRYIRKPIDYT+LDD+GHGVKWL + Q + G L RT
Sbjct: 121 THKIIAPANLERPVRYIRKPIDYTILDDIGHGVKWLLRFKVSTQNMKMGGLPRTTPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPAR--LGSQHSPGRTASLNQRPRT 835
MSG+GTLGR++PY+TLEPV+PP VPNDY+ SP R SQ SP RTAS+NQR RT
Sbjct: 181 PPSPPMSGKGTLGRHSPYRTLEPVRPPVVPNDYVPSPTRNMAPSQQSPVRTASVNQRNRT 240
Query: 836 H--------XXXXXXXXXXXXXXXXXXXIPIAVPTPS 922
+ +PIAVPTPS
Sbjct: 241 YSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPS 277
>ref|NP_937760.1| abl interactor 2 isoform 3 [Mus musculus].
Length = 446
Score = 351 bits (901), Expect = 4e-97
Identities = 189/277 (68%), Positives = 209/277 (75%), Gaps = 10/277 (3%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIP G+RAL +SY NL RVADYCENNYIQ+ DK++ALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSPDKQRALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAY IN LANNVLQ+LDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPAN+ERPVRYIRKPIDYT+LDD+GHGVK + Q + G L RT
Sbjct: 121 THKIIAPANLERPVRYIRKPIDYTILDDIGHGVK------VSTQNMKMGGLPRTTPPTQK 174
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPAR--LGSQHSPGRTASLNQRPRT 835
MSG+GTLGR++PY+TLEPV+PP VPNDY+ SP R SQ SP RTAS+NQR RT
Sbjct: 175 PPSPPMSGKGTLGRHSPYRTLEPVRPPVVPNDYVPSPTRNMAPSQQSPVRTASVNQRNRT 234
Query: 836 H--------XXXXXXXXXXXXXXXXXXXIPIAVPTPS 922
+ +PIAVPTPS
Sbjct: 235 YSSSGSSGGSHPSSRSSSRENSGSGSVGVPIAVPTPS 271
>ref|NP_079935.1| ABI gene family member 3 isoform 1 [Mus musculus].
Length = 367
Score = 181 bits (458), Expect = 1e-45
Identities = 103/239 (43%), Positives = 150/239 (62%)
Frame = +2
Query: 119 KMAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLA 298
++ +LQ L E +IP+G+ AL ++ L RVA+YCE+NY+QATDKRKALEET A+TTQ+LA
Sbjct: 3 ELQQLQQLQEFDIPTGREALRGNHSALLRVANYCEDNYLQATDKRKALEETMAFTTQALA 62
Query: 299 SVAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTS 478
SVAYQ+ LA + L++LD+Q + LR++E+ ++ + Q V++H EKVARREIG L T
Sbjct: 63 SVAYQVGNLAGHTLRMLDLQGAALRQVEAKMSTLGQMVNMHMEKVARREIGTLATVVRLP 122
Query: 479 RTHKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXX 658
K+I P ++ Y RKP+++ LDD+GHGVK L + Q +RTGTLSR +
Sbjct: 123 SNQKVIPPESLPSLTPYHRKPLNFACLDDIGHGVKDL-----STQLSRTGTLSRKSIKAP 177
Query: 659 XXXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRT 835
TLGR P + EPV+ P VP+ +++ + S S G + P++
Sbjct: 178 ATPV-----SATLGR--PPRIPEPVQLPAVPDGKLSAASSASSLASAGSAEGASGIPQS 229
>ref|NP_001156936.1| ABI gene family member 3 isoform 2 [Mus musculus].
Length = 314
Score = 121 bits (304), Expect = 7e-28
Identities = 73/187 (39%), Positives = 109/187 (58%)
Frame = +2
Query: 275 AYTTQSLASVAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGI 454
A+TTQ+LASVAYQ+ LA + L++LD+Q + LR++E+ ++ + Q V++H EKVARREIG
Sbjct: 2 AFTTQALASVAYQVGNLAGHTLRMLDLQGAALRQVEAKMSTLGQMVNMHMEKVARREIGT 61
Query: 455 LTTNKNTSRTHKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTL 634
L T K+I P ++ Y RKP+++ LDD+GHGVK L + Q +RTGTL
Sbjct: 62 LATVVRLPSNQKVIPPESLPSLTPYHRKPLNFACLDDIGHGVKDL-----STQLSRTGTL 116
Query: 635 SRTNXXXXXXXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTAS 814
SR + TLGR P + EPV+ P VP+ +++ + S S G
Sbjct: 117 SRKSIKAPATPV-----SATLGR--PPRIPEPVQLPAVPDGKLSAASSASSLASAGSAEG 169
Query: 815 LNQRPRT 835
+ P++
Sbjct: 170 ASGIPQS 176
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,700,700
Number of extensions: 821700
Number of successful extensions: 3236
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3212
Number of HSP's successfully gapped: 14
Length of query: 326
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 224
Effective length of database: 12,553,887
Effective search space: 2812070688
Effective search space used: 2812070688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007925
(978 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012768.1| abl interactor 1 isoform b [Homo sapiens]. 464 e-137
Alignment gi|NP_001012769.1| abl interactor 1 isoform c [Homo sapiens]. 464 e-137
Alignment gi|NP_001171590.1| abl interactor 1 isoform f [Homo sapiens]. 464 e-136
Alignment gi|NP_001171591.1| abl interactor 1 isoform g [Homo sapiens]. 464 e-136
Alignment gi|NP_005461.2| abl interactor 1 isoform a [Homo sapiens]. 464 e-133
Alignment gi|NP_001012770.1| abl interactor 1 isoform d [Homo sapiens]. 447 e-132
Alignment gi|NP_001171594.1| abl interactor 1 isoform j [Homo sapiens]. 464 e-131
Alignment gi|NP_001171593.1| abl interactor 1 isoform i [Homo sapiens]. 464 e-131
Alignment gi|NP_001171592.1| abl interactor 1 isoform h [Homo sapiens]. 447 e-130
Alignment gi|NP_001171587.1| abl interactor 1 isoform e [Homo sapiens]. 453 e-130
>ref|NP_001012768.1| abl interactor 1 isoform b [Homo sapiens].
Length = 481
Score = 464 bits (1194), Expect(2) = e-137
Identities = 238/267 (89%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 45.1 bits (105), Expect(2) = e-137
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPTIGPAAPGSAPGSQYGT
Sbjct: 268 PPTIGPAAPGSAPGSQYGT 286
>ref|NP_001012769.1| abl interactor 1 isoform c [Homo sapiens].
Length = 452
Score = 464 bits (1194), Expect(2) = e-137
Identities = 238/267 (89%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 45.1 bits (105), Expect(2) = e-137
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPTIGPAAPGSAPGSQYGT
Sbjct: 268 PPTIGPAAPGSAPGSQYGT 286
>ref|NP_001171590.1| abl interactor 1 isoform f [Homo sapiens].
Length = 480
Score = 464 bits (1194), Expect(2) = e-136
Identities = 238/267 (89%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 38.9 bits (89), Expect(2) = e-136
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPTIGPA PGSAPGSQYGT
Sbjct: 268 PPTIGPA-PGSAPGSQYGT 285
>ref|NP_001171591.1| abl interactor 1 isoform g [Homo sapiens].
Length = 451
Score = 464 bits (1194), Expect(2) = e-136
Identities = 238/267 (89%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 38.9 bits (89), Expect(2) = e-136
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPTIGPA PGSAPGSQYGT
Sbjct: 268 PPTIGPA-PGSAPGSQYGT 285
>ref|NP_005461.2| abl interactor 1 isoform a [Homo sapiens].
Length = 508
Score = 464 bits (1194), Expect(2) = e-133
Identities = 238/267 (89%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
Score = 31.2 bits (69), Expect(2) = e-133
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 940 AAPGSAPGSQYGT 978
AAPGSAPGSQYGT
Sbjct: 301 AAPGSAPGSQYGT 313
>ref|NP_001012770.1| abl interactor 1 isoform d [Homo sapiens].
Length = 476
Score = 447 bits (1149), Expect(2) = e-132
Identities = 233/267 (87%), Positives = 233/267 (87%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 45.1 bits (105), Expect(2) = e-132
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPTIGPAAPGSAPGSQYGT
Sbjct: 263 PPTIGPAAPGSAPGSQYGT 281
>ref|NP_001171594.1| abl interactor 1 isoform j [Homo sapiens].
Length = 393
Score = 464 bits (1194), Expect = e-131
Identities = 238/267 (89%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
>ref|NP_001171593.1| abl interactor 1 isoform i [Homo sapiens].
Length = 422
Score = 464 bits (1194), Expect = e-131
Identities = 238/267 (89%), Positives = 238/267 (89%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNPPTQK 180
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 181 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 240
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 241 GSSGGSGSRENSGSSSIGIPIAVPTPS 267
>ref|NP_001171592.1| abl interactor 1 isoform h [Homo sapiens].
Length = 446
Score = 447 bits (1149), Expect(2) = e-130
Identities = 233/267 (87%), Positives = 233/267 (87%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 301
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQATDKRKALEETKAYTTQSLAS 60
Query: 302 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 481
VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR
Sbjct: 61 VAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 120
Query: 482 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNNQPARTGTLSRTNXXXXX 661
THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV KHGNNQPARTGTLSRTN
Sbjct: 121 THKIIAPANMERPVRYIRKPIDYTVLDDVGHGV-----KHGNNQPARTGTLSRTNPPTQK 175
Query: 662 XXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHX 841
MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTH
Sbjct: 176 PPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLNQRPRTHS 235
Query: 842 XXXXXXXXXXXXXXXXXXIPIAVPTPS 922
IPIAVPTPS
Sbjct: 236 GSSGGSGSRENSGSSSIGIPIAVPTPS 262
Score = 38.9 bits (89), Expect(2) = e-130
Identities = 18/19 (94%), Positives = 18/19 (94%)
Frame = +1
Query: 922 PPTIGPAAPGSAPGSQYGT 978
PPTIGPA PGSAPGSQYGT
Sbjct: 263 PPTIGPA-PGSAPGSQYGT 280
>ref|NP_001171587.1| abl interactor 1 isoform e [Homo sapiens].
Length = 496
Score = 453 bits (1166), Expect(2) = e-130
Identities = 238/284 (83%), Positives = 238/284 (83%), Gaps = 17/284 (5%)
Frame = +2
Query: 122 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQ-----------------ATDK 250
MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQ ATDK
Sbjct: 1 MAELQMLLEEEIPSGKRALIESYQNLTRVADYCENNYIQRHGFAVLLCLLSNSWPQATDK 60
Query: 251 RKALEETKAYTTQSLASVAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEK 430
RKALEETKAYTTQSLASVAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEK
Sbjct: 61 RKALEETKAYTTQSLASVAYQINALANNVLQLLDIQASQLRRMESSINHISQTVDIHKEK 120
Query: 431 VARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNN 610
VARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNN
Sbjct: 121 VARREIGILTTNKNTSRTHKIIAPANMERPVRYIRKPIDYTVLDDVGHGVKWLKAKHGNN 180
Query: 611 QPARTGTLSRTNXXXXXXXXXXMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQ 790
QPARTGTLSRTN MSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQ
Sbjct: 181 QPARTGTLSRTNPPTQKPPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQ 240
Query: 791 HSPGRTASLNQRPRTHXXXXXXXXXXXXXXXXXXXIPIAVPTPS 922
HSPGRTASLNQRPRTH IPIAVPTPS
Sbjct: 241 HSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPS 284
Score = 31.2 bits (69), Expect(2) = e-130
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 940 AAPGSAPGSQYGT 978
AAPGSAPGSQYGT
Sbjct: 318 AAPGSAPGSQYGT 330
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,338,813
Number of extensions: 970356
Number of successful extensions: 3696
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3661
Number of HSP's successfully gapped: 25
Length of query: 326
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 223
Effective length of database: 14,901,872
Effective search space: 3323117456
Effective search space used: 3323117456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007925
(978 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 474 e-131
gb|GL894540.2| Sus scrofa unplaced genomic scaffold ChrUScaf2424 281 3e-73
Sscrofa_Chr15 64 2e-07
>Sscrofa_Chr10
|| Length = 79102373
Score = 474 bits (239), Expect = e-131
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 1 aataccaggcgggagggcgggcaggcggtttgtatccgggctgtgaggtgctcggcgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54244351 aataccaggcgggagggcgggcaggcggtttgtatccgggctgtgaggtgctcggcgtct 54244410
Query: 61 ccgcagaccttgctgcctctgtctctttaacgcgagaggaagcgatgcagaggggtggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54244411 ccgcagaccttgctgcctctgtctctttaacgcgagaggaagcgatgcagaggggtggaa 54244470
Query: 121 aatggcagagctgcagatgttactagaggaggagatcccgtctggcaagagggcgctgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54244471 aatggcagagctgcagatgttactagaggaggagatcccgtctggcaagagggcgctgat 54244530
Query: 181 agagagttaccagaacctgacccgggtggcggactactgtgaaaacaactacatacagg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54244531 agagagttaccagaacctgacccgggtggcggactactgtgaaaacaactacatacagg 54244589
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 405 agactgtggacattcataaagagaaagtggctcgaagagagattggtattttgacaacaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54341401 agactgtggacattcataaagagaaagtggctcgaagagagattggtattttgacaacaa 54341460
Query: 465 ataagaatacatcaagaactcacaaaataatagcacctgcaaatatggagcgtcctgtaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54341461 ataagaatacatcaagaactcacaaaataatagcacctgcaaatatggagcgtcctgtaa 54341520
Query: 525 ggtatattcgaaaacctatcgactacacagttctggatgatgtgggtcatggtgtcaag 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54341521 ggtatattcgaaaacctatcgactacacagttctggatgatgtgggtcatggtgtcaag 54341579
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 236 caggctacagacaagagaaaagctttagaagagaccaaagcctacacaacccaatcccta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54298469 caggctacagacaagagaaaagctttagaagagaccaaagcctacacaacccaatcccta 54298528
Query: 296 gctagtgttgcttatcaaataaatgcattggccaacaatgtactccagttgctggacatc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54298529 gctagtgttgcttatcaaataaatgcattggccaacaatgtactccagttgctggacatc 54298588
Query: 356 caagcctctcagcttcggagaatggagtcttccatcaatcatatttcacag 406
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54298589 caagcctctcagcttcggagaatggagtcttccatcaatcatatttcacag 54298639
Score = 281 bits (142), Expect = 3e-73
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 699 gacgaaacactccttacaaaaccctggaacctgttaaacctccaacagttcctaatgact 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54348430 gacgaaacactccttacaaaaccctggaacctgttaaacctccaacagttcctaatgact 54348489
Query: 759 acatgaccagtcctgctaggctcggaagtcagcatagtccaggcaggacagcttctttaa 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54348490 acatgaccagtcctgctaggctcggaagtcagcatagtccaggcaggacagcttctttaa 54348549
Query: 819 atcagagaccaaggacgcacag 840
||||||||||||||||||||||
Sbjct: 54348550 atcagagaccaaggacgcacag 54348571
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 597 agcatggaaataaccagcctgcaagaactggcacactgtcgagaacaaatcctcctactc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54347075 agcatggaaataaccagcctgcaagaactggcacactgtcgagaacaaatcctcctactc 54347134
Query: 657 agaaaccaccgagtcctcccatgtcaggccggggaacgctggg 699
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54347135 agaaaccaccgagtcctcccatgtcaggccggggaacgctggg 54347177
Score = 174 bits (88), Expect = 6e-41
Identities = 101/104 (97%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 838 cagtggaagcagtggaggcagtggaagccggaaaaacagtggcagcagcagtattggcat 897
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 54351263 cagtggaagcagtggaggcagtggaagccgagaaaacagtggcagcagcagtattggcat 54351322
Query: 898 tcccattgccgtgcctacaccttc-ccacctactattggaccag 940
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 54351323 tcccattgccgtgcctacaccttcaccacctactattggaccag 54351366
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 938 cagcagccccgggctcagctcctggttcccagtatggcaca 978
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 54357172 cagcagccccgggctcagctcctggttcccagtatggcaca 54357212
>gb|GL894540.2| Sus scrofa unplaced genomic scaffold ChrUScaf2424
Length = 79301
Score = 281 bits (142), Expect = 3e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 699 gacgaaacactccttacaaaaccctggaacctgttaaacctccaacagttcctaatgact 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42415 gacgaaacactccttacaaaaccctggaacctgttaaacctccaacagttcctaatgact 42356
Query: 759 acatgaccagtcctgctaggctcggaagtcagcatagtccaggcaggacagcttctttaa 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42355 acatgaccagtcctgctaggctcggaagtcagcatagtccaggcaggacagcttctttaa 42296
Query: 819 atcagagaccaaggacgcacag 840
||||||||||||||||||||||
Sbjct: 42295 atcagagaccaaggacgcacag 42274
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 597 agcatggaaataaccagcctgcaagaactggcacactgtcgagaacaaatcctcctactc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43949 agcatggaaataaccagcctgcaagaactggcacactgtcgagaacaaatcctcctactc 43890
Query: 657 agaaaccaccgagtcctcccatgtcaggccggggaacgctggg 699
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43889 agaaaccaccgagtcctcccatgtcaggccggggaacgctggg 43847
Score = 157 bits (79), Expect = 1e-35
Identities = 82/83 (98%)
Strand = Plus / Minus
Query: 501 ctgcaaatatggagcgtcctgtaaggtatattcgaaaacctatcgactacacagttctgg 560
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 49248 ctgcaaatatggagcgtcctataaggtatattcgaaaacctatcgactacacagttctgg 49189
Query: 561 atgatgtgggtcatggtgtcaag 583
|||||||||||||||||||||||
Sbjct: 49188 atgatgtgggtcatggtgtcaag 49166
Score = 127 bits (64), Expect = 1e-26
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 838 cagtggaagcagtggaggcagtggaagccggaaaaacagtggcagcagcagtattggcat 897
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 39399 cagtggaagcagtggaggcagtggaagccgagaaaacagtggcagcagcagtattggcat 39340
Query: 898 tcccattgccgt 909
||||||||||||
Sbjct: 39339 tcccattgccgt 39328
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 938 cagcagccccgggctcagctcctggttcccagtatggcaca 978
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 33319 cagcagccccgggctcagctcctggttcccagtatggcaca 33279
>Sscrofa_Chr15
|| Length = 157681621
Score = 63.9 bits (32), Expect = 2e-07
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 405 agactgtggacattcataaagagaaagtggctcgaagagagattggtattttgacaacaa 464
||||||| || ||||||||||||||||| || ||||||| |||||||||||||| || |
Sbjct: 118176964 agactgttgatattcataaagagaaagttgcaagaagagaaattggtattttgactacca 118176905
Query: 465 ataa 468
||||
Sbjct: 118176904 ataa 118176901
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,560,815
Number of extensions: 187
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 13
Length of query: 978
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 957
Effective length of database: 2,808,413,156
Effective search space: 2687651390292
Effective search space used: 2687651390292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)