Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007930
(2814 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095826.1| eukaryotic translation initiation factor 3 s... 1321 0.0
Alignment gi|NP_001095753.1| eukaryotic translation initiation factor 2A ... 94 7e-19
>ref|NP_001095826.1| eukaryotic translation initiation factor 3 subunit B [Bos taurus].
Length = 786
Score = 1321 bits (3418), Expect = 0.0
Identities = 659/786 (83%), Positives = 663/786 (84%), Gaps = 2/786 (0%)
Frame = +3
Query: 39 MQDAENVAAPEASEQRAEPGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 218
MQDAENVAAPEA+EQRAEPG +
Sbjct: 1 MQDAENVAAPEAAEQRAEPGPEQAAAEPSPGAEVARPGVQEAAGGEDAEAGPGPEGPAEP 60
Query: 219 LADGEQKTDXXXXXXXXXXXXXXXLAAGETGXXXXXXXXXXXXXXXXXXXXXXX--DGGA 392
ADGE K D AGE DGGA
Sbjct: 61 AADGEGKADATPGATPPPPEESSAQLAGEAPAEQAQDAAAEAGSEGAGGDPDGAAEDGGA 120
Query: 393 DEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIH 572
DEPSFSDPEDFVDDVSEEELL DVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIH
Sbjct: 121 DEPSFSDPEDFVDDVSEEELLADVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIH 180
Query: 573 KIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVNLFTD 752
KIFSKFGKITNDFYPEEDGRTKGYIFLEYA+PAHALDAVKNADGYKLDKQHTFRVNLFTD
Sbjct: 181 KIFSKFGKITNDFYPEEDGRTKGYIFLEYASPAHALDAVKNADGYKLDKQHTFRVNLFTD 240
Query: 753 FDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVS 932
FDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVS
Sbjct: 241 FDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVKDPVS 300
Query: 933 IEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYL 1112
IEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYL
Sbjct: 301 IEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYL 360
Query: 1113 VTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSI 1292
VTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSI
Sbjct: 361 VTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSI 420
Query: 1293 YETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEIRVRN 1472
YETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEIRVRN
Sbjct: 421 YETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEIRVRN 480
Query: 1473 LFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAF 1652
LFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAF
Sbjct: 481 LFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKETIIAF 540
Query: 1653 AWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGL 1832
AWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGL
Sbjct: 541 AWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGL 600
Query: 1833 RSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQG 2012
RSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQG
Sbjct: 601 RSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQG 660
Query: 2013 RLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASKELVE 2192
RLLQKNSKDRFCQLLWRPRPPT FEQKDRLSQSKASKELVE
Sbjct: 661 RLLQKNSKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASKELVE 720
Query: 2193 RRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXXXXXX 2372
RRRTMMEDFRKYRK AQELYMEQKN RLELRGGVDTDELDSNVDDW
Sbjct: 721 RRRTMMEDFRKYRKMAQELYMEQKNARLELRGGVDTDELDSNVDDWEEETIEFFVTEEII 780
Query: 2373 PLGNQE 2390
PLGNQE
Sbjct: 781 PLGNQE 786
>ref|NP_001095753.1| eukaryotic translation initiation factor 2A [Bos taurus].
Length = 585
Score = 94.0 bits (232), Expect = 7e-19
Identities = 92/383 (24%), Positives = 157/383 (40%), Gaps = 18/383 (4%)
Frame = +3
Query: 972 WSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDTQDDP 1151
+S GT A + + I + K + F ++FSP L T+ P ++DD
Sbjct: 44 FSKDGTLFAWGNGKKINVISVTKKGLLHSFDLPKAVCLEFSPKNTVLATWQPYTASKDDT 103
Query: 1152 QAII---IWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMGLLD 1322
I ++D+ TG + F + +W WS D AR + + +E + +
Sbjct: 104 AGIPNLQLYDVKTGTCLKSFIQKKMQNW-CPSWSEDETLCARNVNNEVHFFENNNFNTIA 162
Query: 1323 KKSLKISGIKDFSWSPGGNI--IAFWVPEDKDIPARVTLMQLPSRQE----IRVRNLFNV 1484
K L + I DF SPG +A +VP K P+ V L Q P+ E + ++ F
Sbjct: 163 NK-LHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDEPHAALANKSFFKA 221
Query: 1485 VDCKLHWQKNGDYLCV----KVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET--II 1646
+ W K + V VD+T G T I E V V++ + I
Sbjct: 222 DKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAV----VQLPKNGPIY 277
Query: 1647 AFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLA 1826
W + ++F ++G P + F N K + + F N ++SP G +VLA
Sbjct: 278 DVVWNSSSTEFCAVYGFMPAKATVF-----NLKCDPVFDFGTGPRNAAYYSPHGHILVLA 332
Query: 1827 GLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTF 2006
G ++ G + D +++ ++ W P G +++T+ +V+N Y +W +
Sbjct: 333 GFGNLRGQMEVWDVKKYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHY 392
Query: 2007 QGRLLQK---NSKDRFCQLLWRP 2066
G +L K S Q+ W+P
Sbjct: 393 TGSVLHKYDVPSNAELWQVSWQP 415
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 98,758,796
Number of extensions: 2762009
Number of successful extensions: 9599
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9571
Number of HSP's successfully gapped: 2
Length of query: 938
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 826
Effective length of database: 13,975,518
Effective search space: 11543777868
Effective search space used: 11543777868
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007930
(2814 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850719.1| PREDICTED: similar to Eukaryotic translation in... 1296 0.0
Alignment gi|XP_862108.1| PREDICTED: similar to Eukaryotic translation in... 1296 0.0
Alignment gi|XP_862080.1| PREDICTED: similar to Eukaryotic translation in... 1296 0.0
Alignment gi|XP_536894.2| PREDICTED: similar to Eukaryotic translation in... 1296 0.0
Alignment gi|XP_862133.1| PREDICTED: similar to Eukaryotic translation in... 1183 0.0
Alignment gi|XP_534306.2| PREDICTED: similar to CDA02 protein isoform 1 [... 94 7e-19
Alignment gi|XP_866078.1| PREDICTED: similar to CDA02 protein isoform 3 [... 81 5e-15
Alignment gi|XP_866062.1| PREDICTED: similar to CDA02 protein isoform 2 [... 55 5e-07
>ref|XP_850719.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
isoform 2 [Canis familiaris].
Length = 751
Score = 1296 bits (3354), Expect = 0.0
Identities = 626/670 (93%), Positives = 633/670 (94%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
DGGADEPSFSDPEDFVDDVSEEELLGD+LKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 82 DGGADEPSFSDPEDFVDDVSEEELLGDILKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 141
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKITNDFYPEEDG+TKGY FLEYA+PAHALDAVKNADGYKLDKQHTFRVN
Sbjct: 142 NVIHKIFSKFGKITNDFYPEEDGKTKGYTFLEYASPAHALDAVKNADGYKLDKQHTFRVN 201
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 202 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 261
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC
Sbjct: 262 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 321
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ERYLVTFSPLM TQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD
Sbjct: 322 ERYLVTFSPLMGTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 381
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 382 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 441
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 442 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 501
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 502 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 561
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 562 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 621
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 622 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASK 681
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFRKYRK AQELYMEQK+ERLELRGGVDTDELDSNV+DW
Sbjct: 682 ELVERRRTMMEDFRKYRKMAQELYMEQKSERLELRGGVDTDELDSNVEDWEEETIEFFVT 741
Query: 2361 XXXXPLGNQE 2390
PLGNQE
Sbjct: 742 EEIIPLGNQE 751
>ref|XP_862108.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
isoform 4 [Canis familiaris].
Length = 785
Score = 1296 bits (3354), Expect = 0.0
Identities = 626/670 (93%), Positives = 633/670 (94%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
DGGADEPSFSDPEDFVDDVSEEELLGD+LKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 116 DGGADEPSFSDPEDFVDDVSEEELLGDILKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 175
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKITNDFYPEEDG+TKGY FLEYA+PAHALDAVKNADGYKLDKQHTFRVN
Sbjct: 176 NVIHKIFSKFGKITNDFYPEEDGKTKGYTFLEYASPAHALDAVKNADGYKLDKQHTFRVN 235
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 236 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 295
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC
Sbjct: 296 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 355
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ERYLVTFSPLM TQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD
Sbjct: 356 ERYLVTFSPLMGTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 415
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 416 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 475
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 476 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 535
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 536 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 595
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 596 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 655
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 656 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASK 715
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFRKYRK AQELYMEQK+ERLELRGGVDTDELDSNV+DW
Sbjct: 716 ELVERRRTMMEDFRKYRKMAQELYMEQKSERLELRGGVDTDELDSNVEDWEEETIEFFVT 775
Query: 2361 XXXXPLGNQE 2390
PLGNQE
Sbjct: 776 EEIIPLGNQE 785
>ref|XP_862080.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
isoform 3 [Canis familiaris].
Length = 785
Score = 1296 bits (3354), Expect = 0.0
Identities = 626/670 (93%), Positives = 633/670 (94%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
DGGADEPSFSDPEDFVDDVSEEELLGD+LKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 116 DGGADEPSFSDPEDFVDDVSEEELLGDILKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 175
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKITNDFYPEEDG+TKGY FLEYA+PAHALDAVKNADGYKLDKQHTFRVN
Sbjct: 176 NVIHKIFSKFGKITNDFYPEEDGKTKGYTFLEYASPAHALDAVKNADGYKLDKQHTFRVN 235
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 236 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 295
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC
Sbjct: 296 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 355
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ERYLVTFSPLM TQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD
Sbjct: 356 ERYLVTFSPLMGTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 415
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 416 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 475
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 476 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 535
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 536 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 595
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 596 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 655
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 656 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASK 715
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFRKYRK AQELYMEQK+ERLELRGGVDTDELDSNV+DW
Sbjct: 716 ELVERRRTMMEDFRKYRKMAQELYMEQKSERLELRGGVDTDELDSNVEDWEEETIEFFVT 775
Query: 2361 XXXXPLGNQE 2390
PLGNQE
Sbjct: 776 EEIIPLGNQE 785
>ref|XP_536894.2| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
isoform 1 [Canis familiaris].
Length = 785
Score = 1296 bits (3354), Expect = 0.0
Identities = 626/670 (93%), Positives = 633/670 (94%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
DGGADEPSFSDPEDFVDDVSEEELLGD+LKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 116 DGGADEPSFSDPEDFVDDVSEEELLGDILKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 175
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKITNDFYPEEDG+TKGY FLEYA+PAHALDAVKNADGYKLDKQHTFRVN
Sbjct: 176 NVIHKIFSKFGKITNDFYPEEDGKTKGYTFLEYASPAHALDAVKNADGYKLDKQHTFRVN 235
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 236 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 295
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC
Sbjct: 296 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 355
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ERYLVTFSPLM TQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD
Sbjct: 356 ERYLVTFSPLMGTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 415
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 416 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 475
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 476 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 535
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 536 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 595
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 596 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 655
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 656 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASK 715
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFRKYRK AQELYMEQK+ERLELRGGVDTDELDSNV+DW
Sbjct: 716 ELVERRRTMMEDFRKYRKMAQELYMEQKSERLELRGGVDTDELDSNVEDWEEETIEFFVT 775
Query: 2361 XXXXPLGNQE 2390
PLGNQE
Sbjct: 776 EEIIPLGNQE 785
>ref|XP_862133.1| PREDICTED: similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
isoform 5 [Canis familiaris].
Length = 741
Score = 1183 bits (3061), Expect = 0.0
Identities = 583/670 (87%), Positives = 590/670 (88%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
DGGADEPSFSDPEDFVDDVSEEELLGD+LKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 116 DGGADEPSFSDPEDFVDDVSEEELLGDILKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 175
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKITNDFYPEEDG+TKGY FLEYA+PAHALDAVKNADGYKLDKQHTFRVN
Sbjct: 176 NVIHKIFSKFGKITNDFYPEEDGKTKGYTFLEYASPAHALDAVKNADGYKLDKQHTFRVN 235
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 236 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 295
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC
Sbjct: 296 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 355
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ER WSHDGKFFARMTLD
Sbjct: 356 ER--------------------------------------------WSHDGKFFARMTLD 371
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 372 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 431
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 432 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 491
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 492 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 551
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 552 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 611
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 612 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASK 671
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFRKYRK AQELYMEQK+ERLELRGGVDTDELDSNV+DW
Sbjct: 672 ELVERRRTMMEDFRKYRKMAQELYMEQKSERLELRGGVDTDELDSNVEDWEEETIEFFVT 731
Query: 2361 XXXXPLGNQE 2390
PLGNQE
Sbjct: 732 EEIIPLGNQE 741
>ref|XP_534306.2| PREDICTED: similar to CDA02 protein isoform 1 [Canis familiaris].
Length = 585
Score = 94.0 bits (232), Expect = 7e-19
Identities = 96/396 (24%), Positives = 162/396 (40%), Gaps = 28/396 (7%)
Frame = +3
Query: 963 YVRWSPKGTYLATFHQRG-IALWG-GEKF--------KQIQRFSHQGVQLIDFSPCERYL 1112
+ R S K + TF + G + WG GEK K + F ++FSP L
Sbjct: 31 FPRESGKNCKVYTFSKDGTLFAWGNGEKINVINVTNKKLLHSFDLPKAVCLEFSPKNTVL 90
Query: 1113 VTFSPLMDTQDDPQAII---IWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLDT 1283
T+ P ++D I ++D+ TG + F + +W WS D AR +
Sbjct: 91 ATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNW-CPSWSEDETICARNVNNE 149
Query: 1284 LSIYETPSMGLLDKKSLKISGIKDFSWSPGGNI--IAFWVPEDKDIPARVTLMQLPS--- 1448
+ +E + + K L + I DF SPG +A +VP K P+ V L Q P+
Sbjct: 150 VHFFENNNFNTIANK-LHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDG 208
Query: 1449 -RQEIRVRNLFNVVDCKLHWQKNGDYLCV----KVDRTPKGTQGVVTNFEIFRMREKQVP 1613
+ ++ F + W K + V VD+T G T I E V
Sbjct: 209 PHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIAANGESAV- 267
Query: 1614 VDVVEMKET--IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANT 1787
V++ + I W + ++F ++G P + F N K + + F N
Sbjct: 268 ---VQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIF-----NLKCDPVFDFGTGPRNA 319
Query: 1788 IFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWW 1967
++SP G +VLAG ++ G + D + +++ ++ W P G +++T+
Sbjct: 320 AYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAP 379
Query: 1968 SHKVDNAYWLWTFQGRLLQK---NSKDRFCQLLWRP 2066
+V+N Y +W + G +L K S Q+ W+P
Sbjct: 380 RLRVNNGYKIWHYTGSVLHKYDMPSNAELWQVSWQP 415
>ref|XP_866078.1| PREDICTED: similar to CDA02 protein isoform 3 [Canis familiaris].
Length = 526
Score = 81.3 bits (199), Expect = 5e-15
Identities = 75/316 (23%), Positives = 131/316 (41%), Gaps = 15/316 (4%)
Frame = +3
Query: 1164 IWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMGLLDKKSLKIS 1343
++D+ TG + F + +W WS D AR + + +E + + K L +
Sbjct: 52 LYDVKTGTCLKSFIQKKMQNW-CPSWSEDETICARNVNNEVHFFENNNFNTIANK-LHLQ 109
Query: 1344 GIKDFSWSPGGNI--IAFWVPEDKDIPARVTLMQLPS----RQEIRVRNLFNVVDCKLHW 1505
I DF SPG +A +VP K P+ V L Q P+ + ++ F + W
Sbjct: 110 KINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHAALANKSFFKADKVTMLW 169
Query: 1506 QKNGDYLCV----KVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET--IIAFAWEPN 1667
K + V VD+T G T I E V V++ + I W +
Sbjct: 170 NKKATAVLVIASTDVDKTGASYYGEQTLHYIAANGESAV----VQLPKNGPIYDVVWNSS 225
Query: 1668 GSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLRSMNG 1847
++F ++G P + F N K + + F N ++SP G +VLAG ++ G
Sbjct: 226 STEFCAVYGFMPAKATIF-----NLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRG 280
Query: 1848 ALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGRLLQK 2027
+ D + +++ ++ W P G +++T+ +V+N Y +W + G +L K
Sbjct: 281 QMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSVLHK 340
Query: 2028 ---NSKDRFCQLLWRP 2066
S Q+ W+P
Sbjct: 341 YDMPSNAELWQVSWQP 356
>ref|XP_866062.1| PREDICTED: similar to CDA02 protein isoform 2 [Canis familiaris].
Length = 388
Score = 54.7 bits (130), Expect = 5e-07
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Frame = +3
Query: 1656 WEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVVLAGLR 1835
W + ++F ++G P + F N K + + F N ++SP G +VLAG
Sbjct: 84 WNSSSTEFCAVYGFMPAKATIF-----NLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFG 138
Query: 1836 SMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLWTFQGR 2015
++ G + D + +++ ++ W P G +++T+ +V+N Y +W + G
Sbjct: 139 NLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGS 198
Query: 2016 LLQK---NSKDRFCQLLWRP 2066
+L K S Q+ W+P
Sbjct: 199 VLHKYDMPSNAELWQVSWQP 218
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 102,898,210
Number of extensions: 2781888
Number of successful extensions: 10270
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10241
Number of HSP's successfully gapped: 9
Length of query: 938
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 826
Effective length of database: 15,140,872
Effective search space: 12506360272
Effective search space used: 12506360272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007930
(2814 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358658.1| PREDICTED: eukaryotic translation initiation... 90 8e-18
>ref|XP_003358658.1| PREDICTED: eukaryotic translation initiation factor 2A-like [Sus
scrofa].
Length = 890
Score = 89.7 bits (221), Expect = 8e-18
Identities = 83/346 (23%), Positives = 145/346 (41%), Gaps = 18/346 (5%)
Frame = +3
Query: 1083 IDFSPCERYLVTFSPLMDTQDDPQAII---IWDILTGQKKRGFHCESSAHWPIFKWSHDG 1253
++FSP L T+ P ++D I ++D+ TG + F + +W WS D
Sbjct: 448 LEFSPKNTILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQNW-CPSWSEDE 506
Query: 1254 KFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNI--IAFWVPEDKDIPARV 1427
AR + + +E + + K L + I DF SPG +A +VP K P+ V
Sbjct: 507 TLCARNVNNEVHFFENNNFNTIANK-LHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFV 565
Query: 1428 TLMQLPS----RQEIRVRNLFNVVDCKLHWQKNGDYLCV----KVDRTPKGTQGVVTNFE 1583
L Q P+ + ++ F + W K + V +VD+T G T
Sbjct: 566 RLYQYPNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHY 625
Query: 1584 IFRMREKQVPVDVVEMKET--IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELI 1757
I E V V++ + I W + ++F ++G P + F N K + +
Sbjct: 626 IATNGESAV----VQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIF-----NLKCDPV 676
Query: 1758 KMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTG 1937
F N ++SP G +VLAG ++ G + D + +++ ++ W P G
Sbjct: 677 FDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDG 736
Query: 1938 RYVVTSVSWWSHKVDNAYWLWTFQGRLLQK---NSKDRFCQLLWRP 2066
+++T+ +V+N Y +W + G +L K S Q+ W+P
Sbjct: 737 EHILTATCAPRLRVNNGYKIWHYTGSVLHKYDVPSNAELWQVSWQP 782
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 64,488,370
Number of extensions: 1898695
Number of successful extensions: 6386
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6372
Number of HSP's successfully gapped: 1
Length of query: 938
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 830
Effective length of database: 8,655,056
Effective search space: 7183696480
Effective search space used: 7183696480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007930
(2814 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598677.1| eukaryotic translation initiation factor 3 subu... 1285 0.0
Alignment gi|NP_001005509.1| eukaryotic translation initiation factor 2A ... 92 3e-18
>ref|NP_598677.1| eukaryotic translation initiation factor 3 subunit B [Mus musculus].
Length = 803
Score = 1285 bits (3325), Expect = 0.0
Identities = 620/670 (92%), Positives = 632/670 (94%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
+G ADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 134 NGEADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 193
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKI ND+YPEEDG+TKGYIFLEYA+PAHA+DAVKNADGYKLDKQHTFRVN
Sbjct: 194 NVIHKIFSKFGKIINDYYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 253
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 254 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 313
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGG+KFKQIQRFSHQGVQLIDFSPC
Sbjct: 314 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGDKFKQIQRFSHQGVQLIDFSPC 373
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ERYLVTFSPLMDTQDDPQAIIIWDILTG KKRGFHCESSAHWPIFKWSHDGKFFARMTLD
Sbjct: 374 ERYLVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 433
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 434 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 493
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 494 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 553
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVK+NGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 554 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKSNGKIELIKMFDKQQANTIFWSPQGQFVV 613
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 614 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 673
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 674 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASK 733
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFR+YRK AQELYM+QKNERLELRGGVDTDELDSNVDDW
Sbjct: 734 ELVERRRTMMEDFRQYRKMAQELYMKQKNERLELRGGVDTDELDSNVDDWEEETIEFFVT 793
Query: 2361 XXXXPLGNQE 2390
PLG+QE
Sbjct: 794 EEVIPLGSQE 803
>ref|NP_001005509.1| eukaryotic translation initiation factor 2A [Mus musculus].
Length = 581
Score = 91.7 bits (226), Expect = 3e-18
Identities = 83/346 (23%), Positives = 147/346 (42%), Gaps = 18/346 (5%)
Frame = +3
Query: 1083 IDFSPCERYLVTFSPLMDTQDDPQA---IIIWDILTGQKKRGFHCESSAHWPIFKWSHDG 1253
++FSP L T+ P ++D + ++D+ TG + F + +W WS D
Sbjct: 81 LEFSPNNTVLATWQPYTTSKDGTAGTPNLQLYDMKTGACLKSFIQKKMQNW-CPSWSDDE 139
Query: 1254 KFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNI--IAFWVPEDKDIPARV 1427
AR + + +E + + K L + + DF+ SPG +A +VP K P+ V
Sbjct: 140 IICARNVNNEVHFFENNNFNTIANK-LHLQKVNDFNLSPGTQPYKVAVYVPGSKGAPSFV 198
Query: 1428 TLMQLPS----RQEIRVRNLFNVVDCKLHWQKNGDYLCV----KVDRTPKGTQGVVTNFE 1583
L Q P+ + + ++ F + W K + V +VD+T G T
Sbjct: 199 RLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHY 258
Query: 1584 IFRMREKQVPVDVVEMKET--IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELI 1757
I E V V++ + I W + ++F ++G P + F N K + +
Sbjct: 259 IATNGESAV----VQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVF-----NLKCDPV 309
Query: 1758 KMFDKQQANTIFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTG 1937
F N F+SP G +VLAG ++ G + D + +++ ++ W P G
Sbjct: 310 FDFGTGPRNAAFYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDG 369
Query: 1938 RYVVTSVSWWSHKVDNAYWLWTFQGRLLQK---NSKDRFCQLLWRP 2066
+++T+ +V+N Y +W + G LL K S Q+ W+P
Sbjct: 370 EHILTATCAPRLRVNNGYKIWHYTGSLLHKYDVPSNGELWQVSWQP 415
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 85,029,952
Number of extensions: 2267063
Number of successful extensions: 8120
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8100
Number of HSP's successfully gapped: 2
Length of query: 938
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 827
Effective length of database: 12,283,563
Effective search space: 10158506601
Effective search space used: 10158506601
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007930
(2814 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032360.1| eukaryotic translation initiation factor 3 s... 1297 0.0
Alignment gi|NP_003742.2| eukaryotic translation initiation factor 3 subu... 1297 0.0
Alignment gi|NP_114414.2| eukaryotic translation initiation factor 2A [Ho... 91 8e-18
>ref|NP_001032360.1| eukaryotic translation initiation factor 3 subunit B [Homo sapiens].
Length = 814
Score = 1297 bits (3356), Expect = 0.0
Identities = 627/670 (93%), Positives = 633/670 (94%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
+G ADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 145 NGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 204
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKITNDFYPEEDG+TKGYIFLEYA+PAHA+DAVKNADGYKLDKQHTFRVN
Sbjct: 205 NVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 264
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 265 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 324
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC
Sbjct: 325 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 384
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ERYLVTFSPLMDTQDDPQAIIIWDILTG KKRGFHCESSAHWPIFKWSHDGKFFARMTLD
Sbjct: 385 ERYLVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 444
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 445 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 504
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 505 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 564
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 565 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 624
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 625 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 684
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 685 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASK 744
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFRKYRK AQELYMEQKNERLELRGGVDTDELDSNVDDW
Sbjct: 745 ELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIEFFVT 804
Query: 2361 XXXXPLGNQE 2390
PLGNQE
Sbjct: 805 EEIIPLGNQE 814
>ref|NP_003742.2| eukaryotic translation initiation factor 3 subunit B [Homo sapiens].
Length = 814
Score = 1297 bits (3356), Expect = 0.0
Identities = 627/670 (93%), Positives = 633/670 (94%)
Frame = +3
Query: 381 DGGADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 560
+G ADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK
Sbjct: 145 NGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLK 204
Query: 561 NVIHKIFSKFGKITNDFYPEEDGRTKGYIFLEYAAPAHALDAVKNADGYKLDKQHTFRVN 740
NVIHKIFSKFGKITNDFYPEEDG+TKGYIFLEYA+PAHA+DAVKNADGYKLDKQHTFRVN
Sbjct: 205 NVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 264
Query: 741 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 920
LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK
Sbjct: 265 LFTDFDKYMTISDEWDIPEKQPFKDLGNLRYWLEEAECRDQYSVIFESGDRTSIFWNDVK 324
Query: 921 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 1100
DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC
Sbjct: 325 DPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPC 384
Query: 1101 ERYLVTFSPLMDTQDDPQAIIIWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 1280
ERYLVTFSPLMDTQDDPQAIIIWDILTG KKRGFHCESSAHWPIFKWSHDGKFFARMTLD
Sbjct: 385 ERYLVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMTLD 444
Query: 1281 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEI 1460
TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLP+RQEI
Sbjct: 445 TLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPTRQEI 504
Query: 1461 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 1640
RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET
Sbjct: 505 RVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEMKET 564
Query: 1641 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 1820
IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV
Sbjct: 565 IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANTIFWSPQGQFVV 624
Query: 1821 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 2000
LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW
Sbjct: 625 LAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWWSHKVDNAYWLW 684
Query: 2001 TFQGRLLQKNSKDRFCQLLWRPRPPTXXXXXXXXXXXXXXXXXXXXFEQKDRLSQSKASK 2180
TFQGRLLQKN+KDRFCQLLWRPRPPT FEQKDRLSQSKASK
Sbjct: 685 TFQGRLLQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKDLKKYSKIFEQKDRLSQSKASK 744
Query: 2181 ELVERRRTMMEDFRKYRKKAQELYMEQKNERLELRGGVDTDELDSNVDDWXXXXXXXXXX 2360
ELVERRRTMMEDFRKYRK AQELYMEQKNERLELRGGVDTDELDSNVDDW
Sbjct: 745 ELVERRRTMMEDFRKYRKMAQELYMEQKNERLELRGGVDTDELDSNVDDWEEETIEFFVT 804
Query: 2361 XXXXPLGNQE 2390
PLGNQE
Sbjct: 805 EEIIPLGNQE 814
>ref|NP_114414.2| eukaryotic translation initiation factor 2A [Homo sapiens].
Length = 585
Score = 90.5 bits (223), Expect = 8e-18
Identities = 92/396 (23%), Positives = 162/396 (40%), Gaps = 28/396 (7%)
Frame = +3
Query: 963 YVRWSPKGTYLATFHQRG-IALWGGEKFKQIQRFSHQGVQ---------LIDFSPCERYL 1112
+ R S K + F + G + WG + I +++G+ ++FSP L
Sbjct: 31 FPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVL 90
Query: 1113 VTFSPLMDTQDDPQAII---IWDILTGQKKRGFHCESSAHWPIFKWSHDGKFFARMTLDT 1283
T+ P ++D I ++D+ TG + F + +W WS D AR +
Sbjct: 91 ATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNW-CPSWSEDETLCARNVNNE 149
Query: 1284 LSIYETPSMGLLDKKSLKISGIKDFSWSPGGNI--IAFWVPEDKDIPARVTLMQLPS--- 1448
+ +E + + K L + I DF SPG +A +VP K P+ V L Q P+
Sbjct: 150 VHFFENNNFNTIANK-LHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAG 208
Query: 1449 -RQEIRVRNLFNVVDCKLHWQKNGDYLCV----KVDRTPKGTQGVVTNFEIFRMREKQVP 1613
+ ++ F + W K + V VD+T G T I E V
Sbjct: 209 PHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAV- 267
Query: 1614 VDVVEMKET--IIAFAWEPNGSKFAVLHGEAPRISVSFYHVKNNGKIELIKMFDKQQANT 1787
V++ + I W + ++F ++G P + F N K + + F N
Sbjct: 268 ---VQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIF-----NLKCDPVFDFGTGPRNA 319
Query: 1788 IFWSPQGQFVVLAGLRSMNGALAFVDTSDCTVMNIAEHYMASDVEWDPTGRYVVTSVSWW 1967
++SP G +VLAG ++ G + D + +++ ++ W P G +++T+
Sbjct: 320 AYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAP 379
Query: 1968 SHKVDNAYWLWTFQGRLLQK---NSKDRFCQLLWRP 2066
+V+N Y +W + G +L K S Q+ W+P
Sbjct: 380 RLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQP 415
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 100,687,964
Number of extensions: 2707383
Number of successful extensions: 9465
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9437
Number of HSP's successfully gapped: 3
Length of query: 938
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 826
Effective length of database: 14,605,196
Effective search space: 12063891896
Effective search space used: 12063891896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007930
(2814 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893662.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 391 e-105
>gb|GL893662.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2404
Length = 21379
Score = 391 bits (197), Expect = e-105
Identities = 197/197 (100%)
Strand = Plus / Minus
Query: 446 agagttactgggagacgtactcaaagatcggccgcaggaagcagacgggattgattcggt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 agagttactgggagacgtactcaaagatcggccgcaggaagcagacgggattgattcggt 4518
Query: 506 catcgtggtggacaacgtcccgcaggtgggacctgaccgtctggagaaactcaaaaacgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4517 catcgtggtggacaacgtcccgcaggtgggacctgaccgtctggagaaactcaaaaacgt 4458
Query: 566 catccataagatcttctccaagtttgggaaaatcacgaacgacttttatccggaggagga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 catccataagatcttctccaagtttgggaaaatcacgaacgacttttatccggaggagga 4398
Query: 626 cggaaggaccaaagggt 642
|||||||||||||||||
Sbjct: 4397 cggaaggaccaaagggt 4381
Score = 321 bits (162), Expect = 1e-84
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 947 gcggtggacagagacctacgtgcgttggtcccctaagggcacctacctggcgacctttca 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3026 gcggtggacagagacctacgtgcgttggtcccctaagggcacctacctggcgacctttca 2967
Query: 1007 tcagcgaggcattgctctctggggaggagagaaattcaaacagatccagagattcagcca 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 tcagcgaggcattgctctctggggaggagagaaattcaaacagatccagagattcagcca 2907
Query: 1067 ccaaggggtccagctcatcgacttctcgccgtgtgaaaggta 1108
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 ccaaggggtccagctcatcgacttctcgccgtgtgaaaggta 2865
Score = 214 bits (108), Expect = 2e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 840 gaggaggcggagtgccgagatcagtacagcgtgatttttgagagtggagaccgcacgtcc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3424 gaggaggcggagtgccgagatcagtacagcgtgatttttgagagtggagaccgcacgtcc 3365
Query: 900 atattctggaacgacgtcaaggaccccgtgtccattgaagagagagcg 947
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3364 atattctggaacgacgtcaaggaccccgtgtccattgaagagagagcg 3317
Score = 157 bits (79), Expect = 4e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 1104 aggtacctggtgactttcagccccctgatggacactcaggacgaccctcaggccatcatc 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2017 aggtacctggtgactttcagccccctgatggacactcaggacgaccctcaggccatcatc 1958
Query: 1164 atctgggacatcctcaccg 1182
|||||||||||||||||||
Sbjct: 1957 atctgggacatcctcaccg 1939
Score = 133 bits (67), Expect = 6e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1238 gtggagccacgatggtaaattcttcgccagaatgacactcgacacgctcagtatctacga 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 gtggagccacgatggtaaattcttcgccagaatgacactcgacacgctcagtatctacga 1670
Query: 1298 gacgccc 1304
|||||||
Sbjct: 1669 gacgccc 1663
Score = 101 bits (51), Expect = 2e-18
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 698 cgacgggtacaagctcgacaagcagcatacattcagagtcaacctcttcac 748
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 cgacgggtacaagctcgacaagcagcatacattcagagtcaacctcttcac 3851
Score = 93.7 bits (47), Expect = 5e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 1305 tctatgggtcttctggacaagaagagcttgaagatctctggcataaa 1351
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tctatgggtcttctggacaagaagagcttgaagatctctggcataaa 1168
Score = 71.9 bits (36), Expect = 2e-09
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 761 atacatgaccatcagcgacgaatgggacattccaga 796
||||||||||||||||||||||||||||||||||||
Sbjct: 3461 atacatgaccatcagcgacgaatgggacattccaga 3426
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,130,016
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 8
Length of query: 2814
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2792
Effective length of database: 2,808,408,574
Effective search space: 7841076738608
Effective search space used: 7841076738608
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)