Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007949
(1055 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014876.1| ribosomal L1 domain-containing protein 1 [Bo... 394 e-110
>ref|NP_001014876.1| ribosomal L1 domain-containing protein 1 [Bos taurus].
Length = 482
Score = 394 bits (1013), Expect = e-110
Identities = 199/250 (79%), Positives = 214/250 (85%)
Frame = +2
Query: 122 EQLNEEQIKKAVETLLAHSKSRKNAXXXXXXXXXXXXXMVVLWKIPSKELRVRLSLPHGI 301
EQL+EEQ+KKAVE LLAHS+SRKNA MVVLWKIPSKELRVRLSLPHGI
Sbjct: 27 EQLDEEQVKKAVEALLAHSRSRKNANGLLLNENENFFLMVVLWKIPSKELRVRLSLPHGI 86
Query: 302 RSDLTDICLFTKDEPNLTPEQTERFYKKLLNKHGVKNISQIIPFRTLKKEYKAYEAKLRL 481
RSDL D+CLFTKDEPNL+ EQTER+YKKLLN HG+K ISQIIPFRTLKKEYKAYEAKLRL
Sbjct: 87 RSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRL 146
Query: 482 LGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQAKNLSREISDCVGGTVLNISKS 661
LGSFDFFITD+RIRRLLPSHLGRHFYNRKKVPVSVNLQ+K LSREI+DC+GGTVLNISKS
Sbjct: 147 LGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKS 206
Query: 662 GSCSTIRIGHTGMQVQHIVENVLAVAKRLSQALPEKWESVKLLYVKTERXXXXXXXXXXX 841
GSCSTIRIGHTGM +QHIVENV+AVAK LSQ LPEKWESVKLL+VKTER
Sbjct: 207 GSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSFV 266
Query: 842 XXRGEAKELR 871
+GEAK LR
Sbjct: 267 SSQGEAKGLR 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,214,494
Number of extensions: 762366
Number of successful extensions: 2444
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2439
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007949
(1055 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536972.2| PREDICTED: similar to Ribosomal L1 domain conta... 385 e-107
Alignment gi|XP_851289.1| PREDICTED: similar to ribosomal L1 domain conta... 201 1e-51
Alignment gi|XP_855319.1| PREDICTED: similar to ribosomal L1 domain conta... 198 8e-51
>ref|XP_536972.2| PREDICTED: similar to Ribosomal L1 domain containing protein 1
(Cellular senescence inhibited gene protein) (PBK1
protein) (CATX-11) [Canis familiaris].
Length = 490
Score = 385 bits (988), Expect = e-107
Identities = 192/248 (77%), Positives = 212/248 (85%)
Frame = +2
Query: 119 LEQLNEEQIKKAVETLLAHSKSRKNAXXXXXXXXXXXXXMVVLWKIPSKELRVRLSLPHG 298
LEQL++ QI+KAVE LLAHS+SRKNA MV+LWKIPSKELRVRL+LPHG
Sbjct: 26 LEQLDKGQIRKAVEALLAHSRSRKNANGLLLNENENFFLMVILWKIPSKELRVRLALPHG 85
Query: 299 IRSDLTDICLFTKDEPNLTPEQTERFYKKLLNKHGVKNISQIIPFRTLKKEYKAYEAKLR 478
IRSDLTDICL TKDEPNLTPE TERFYKKLLNKHG+K ISQIIP RTLKKEYKAYEAKLR
Sbjct: 86 IRSDLTDICLLTKDEPNLTPENTERFYKKLLNKHGIKTISQIIPLRTLKKEYKAYEAKLR 145
Query: 479 LLGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQAKNLSREISDCVGGTVLNISK 658
LLGSFDFF+TD+RIRRLLPSHLGRHFY+RKKVPV VNL AKNLSREI++C+GGTVLNISK
Sbjct: 146 LLGSFDFFLTDARIRRLLPSHLGRHFYHRKKVPVPVNLLAKNLSREINECIGGTVLNISK 205
Query: 659 SGSCSTIRIGHTGMQVQHIVENVLAVAKRLSQALPEKWESVKLLYVKTERXXXXXXXXXX 838
SGSCSTIR+GHTGM+V+HIV+N++AVAKRLSQ LPEKWESVKLLYVKTER
Sbjct: 206 SGSCSTIRVGHTGMEVEHIVDNIIAVAKRLSQKLPEKWESVKLLYVKTERSASLPIFSSF 265
Query: 839 XXXRGEAK 862
+ EAK
Sbjct: 266 VSCQDEAK 273
>ref|XP_851289.1| PREDICTED: similar to ribosomal L1 domain containing 1 [Canis
familiaris].
Length = 160
Score = 201 bits (511), Expect = 1e-51
Identities = 95/130 (73%), Positives = 115/130 (88%)
Frame = +2
Query: 416 SQIIPFRTLKKEYKAYEAKLRLLGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQ 595
++IIP RTLKK YKAYEAKL LLGSFDFF+TD+RIR LLPSHLGRHFY+ K + V +NL
Sbjct: 30 ARIIPLRTLKKAYKAYEAKLCLLGSFDFFLTDARIRWLLPSHLGRHFYHGKNMLVPLNLL 89
Query: 596 AKNLSREISDCVGGTVLNISKSGSCSTIRIGHTGMQVQHIVENVLAVAKRLSQALPEKWE 775
AKN+SREI++C+G TVLNISKSGSC+TI GHTGM+V+HI++N+++V KRLSQ LPEKWE
Sbjct: 90 AKNVSREINECIGSTVLNISKSGSCNTIHAGHTGMEVEHIIDNIISVTKRLSQKLPEKWE 149
Query: 776 SVKLLYVKTE 805
S+KL YVKTE
Sbjct: 150 SMKLFYVKTE 159
>ref|XP_855319.1| PREDICTED: similar to ribosomal L1 domain containing 1 [Canis
familiaris].
Length = 369
Score = 198 bits (503), Expect = 8e-51
Identities = 99/153 (64%), Positives = 121/153 (79%)
Frame = +2
Query: 425 IPFRTLKKEYKAYEAKLRLLGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQAKN 604
IP + L+ EYKAYEAKL LLGS DFF+TD+ R LLPSHLGRHFY+R+KVPV VNL AKN
Sbjct: 68 IPSKELR-EYKAYEAKLCLLGSSDFFLTDATTRWLLPSHLGRHFYHREKVPVPVNLLAKN 126
Query: 605 LSREISDCVGGTVLNISKSGSCSTIRIGHTGMQVQHIVENVLAVAKRLSQALPEKWESVK 784
LSR+I++C+GGTVLNIS+SGSCS IR+GHTGM+V+H++ N++AV+KRLSQ LPEKWESVK
Sbjct: 127 LSRDINECIGGTVLNISRSGSCSAIRVGHTGMEVEHVIHNLMAVSKRLSQKLPEKWESVK 186
Query: 785 LLYVKTERXXXXXXXXXXXXXRGEAKELRATNQ 883
LLYVKT R + EAK + +Q
Sbjct: 187 LLYVKTARSASLPIFSSFVSCQDEAKGMCTPSQ 219
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,623,321
Number of extensions: 784753
Number of successful extensions: 2439
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2436
Number of HSP's successfully gapped: 4
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007949
(1055 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,709,139
Number of extensions: 488655
Number of successful extensions: 1586
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1584
Number of HSP's successfully gapped: 0
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007949
(1055 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079822.1| ribosomal L1 domain-containing protein 1 [Mus m... 315 3e-86
>ref|NP_079822.1| ribosomal L1 domain-containing protein 1 [Mus musculus].
Length = 452
Score = 315 bits (808), Expect = 3e-86
Identities = 158/230 (68%), Positives = 188/230 (81%)
Frame = +2
Query: 119 LEQLNEEQIKKAVETLLAHSKSRKNAXXXXXXXXXXXXXMVVLWKIPSKELRVRLSLPHG 298
L QL+ EQI+KAVE + SKS+KN MV+LWKIP KELRV++ LPH
Sbjct: 28 LLQLDREQIRKAVEVISNRSKSKKNNNELLLSGSENLFLMVILWKIPEKELRVKVPLPHS 87
Query: 299 IRSDLTDICLFTKDEPNLTPEQTERFYKKLLNKHGVKNISQIIPFRTLKKEYKAYEAKLR 478
I S+ +D+CLFTKDE + +PEQTE FYKKLL KHGV ISQIIPF+TLK EYKAYEAKLR
Sbjct: 88 ILSESSDVCLFTKDEFD-SPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLR 146
Query: 479 LLGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQAKNLSREISDCVGGTVLNISK 658
LLGSF+ FITD+RIRR LPSH+GRHFY RKKVPVSVNL AKNLS+EI+ C+ GTVLNISK
Sbjct: 147 LLGSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISK 206
Query: 659 SGSCSTIRIGHTGMQVQHIVENVLAVAKRLSQALPEKWESVKLLYVKTER 808
GSCSTIRIGHTGM+ +HIV+N+LAV++ LS+ LPEKW+SVKLL++KTE+
Sbjct: 207 RGSCSTIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEK 256
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,148,669
Number of extensions: 661977
Number of successful extensions: 2010
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007949
(1055 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056474.2| ribosomal L1 domain-containing protein 1 [Homo ... 352 3e-97
>ref|NP_056474.2| ribosomal L1 domain-containing protein 1 [Homo sapiens].
Length = 490
Score = 352 bits (904), Expect = 3e-97
Identities = 180/293 (61%), Positives = 213/293 (72%)
Frame = +2
Query: 122 EQLNEEQIKKAVETLLAHSKSRKNAXXXXXXXXXXXXXMVVLWKIPSKELRVRLSLPHGI 301
+QL++EQ++KAV+ LL H KSRKN MVVLWKIPSKELRVRL+LPH I
Sbjct: 29 KQLDKEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELRVRLTLPHSI 88
Query: 302 RSDLTDICLFTKDEPNLTPEQTERFYKKLLNKHGVKNISQIIPFRTLKKEYKAYEAKLRL 481
RSD DICLFTKDEPN TPE+TE+FY+KLLNKHG+K +SQII +TLKKEYK+YEAKLRL
Sbjct: 89 RSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRL 148
Query: 482 LGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQAKNLSREISDCVGGTVLNISKS 661
L SFDFF+TD+RIRRLLPS +GRHFY RKKVPVSVNL +KNLSREI+DC+GGTVLNISKS
Sbjct: 149 LSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKS 208
Query: 662 GSCSTIRIGHTGMQVQHIVENVLAVAKRLSQALPEKWESVKLLYVKTERXXXXXXXXXXX 841
GSCS IRIGH GMQ++HI+EN++AV K LS+ LPEKWESVKLL+VKTE+
Sbjct: 209 GSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSFV 268
Query: 842 XXRGEAKELRATNQXXXXXXXXXXXXNILKHNRRKREPQS*RKRPGRLHQPQV 1000
EA + N+ N K RK++ Q RK L + V
Sbjct: 269 SNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQQARKTASVLSKDDV 321
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,053,585
Number of extensions: 782446
Number of successful extensions: 2606
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2604
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007949
(1055 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893953.2| Sus scrofa unplaced genomic scaffold ChrUScaf1838 301 4e-79
>gb|GL893953.2| Sus scrofa unplaced genomic scaffold ChrUScaf1838
Length = 124987
Score = 301 bits (152), Expect = 4e-79
Identities = 158/160 (98%)
Strand = Plus / Plus
Query: 411 acatttctcagattatccccttccgaactctaaaaaaggaatataaagcctatgaagcca 470
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109813 acatttcctagattatccccttccgaactctaaaaaaggaatataaagcctatgaagcca 109872
Query: 471 agctccgcctcttgggcagttttgacttcttcattacggactccagaatcaggcggctct 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109873 agctccgcctcttgggcagttttgacttcttcattacggactccagaatcaggcggctct 109932
Query: 531 taccctcacacctcgggaggcatttctacaacagaaagaa 570
||||||||||||||||||||||||||||||||||||||||
Sbjct: 109933 taccctcacacctcgggaggcatttctacaacagaaagaa 109972
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 139 gcagattaaaaaggctgtggaaactctcttggcacattccaaatccaggaagaacgcgaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106874 gcagattaaaaaggctgtggaaactctcttggcacattccaaatccaggaagaacgcgaa 106933
Query: 199 tggattgcttttgaatgagaatgaaaatttctttttaatggtggtattatggaaaattcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106934 tggattgcttttgaatgagaatgaaaatttctttttaatggtggtattatggaaaattcc 106993
Query: 259 aagtaaagaactgagggtcagattgt 284
||||||||||||||||||||||||||
Sbjct: 106994 aagtaaagaactgagggtcagattgt 107019
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 283 gtccttgcctcatggtattcgatcagatttaacagatatctgtttattcaccaaagatga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108678 gtccttgcctcatggtattcgatcagatttaacagatatctgtttattcaccaaagatga 108737
Query: 343 acccaatttaactcctgaacagacagaacgtttttataagaagcttttgaacaagcatgg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108738 acccaatttaactcctgaacagacagaacgtttttataagaagcttttgaacaagcatgg 108797
Query: 403 ggttaaaaacatttctcag 421
|||||||||||||||||||
Sbjct: 108798 ggttaaaaacatttctcag 108816
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 765 agaagtgggagagcgtgaagctcttgtacgtgaagacggagaggtcggtctccctgcctg 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112307 agaagtgggagagcgtgaagctcttgtacgtgaagacggagaggtcggtctccctgcctg 112366
Query: 825 tcttctcgtcgtttgtcagcagtcggggcgaagcgaaggaactgcgcgccacaaatca 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112367 tcttctcgtcgtttgtcagcagtcggggcgaagcgaaggaactgcgcgccacaaatca 112424
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 571 agttccggtatctgtgaaccttcaggccaagaatttgtccagagagatcagtgactgtgt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110060 agttccggtatctgtgaaccttcaggccaagaatttgtccagagagatcagtgactgtgt 110119
Query: 631 tgggggaactgtcctaaacatctcgaaaagtggttcttgcag 672
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110120 tgggggaactgtcctaaacatctcgaaaagtggttcttgcag 110161
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 670 cagcaccatccgcatcgggcacacggggatgcaggttcagcacatcgttgagaacgtcct 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112129 cagcaccatccgcatcgggcacacggggatgcaggttcagcacatcgttgagaacgtcct 112188
Query: 730 tgccgtggcaaaaaggctctcccaggccctgccggag 766
|||||||||||||||||||||||||||||||||||||
Sbjct: 112189 tgccgtggcaaaaaggctctcccaggccctgccggag 112225
Score = 184 bits (93), Expect = 7e-44
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 46 gggctcggcttctaccccggcgtccgctgcttcaaccgcaacttcgtcttcgactgtagc 105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 105900 gggctcggcttctaccccggcgtccgctgcttcaaccgcaacttcgtcttcgactgtaac 105959
Query: 106 gacccccgcctcactcgagcagctgaatgaagagcag 142
|||||||||||||||||||||||||||||||||||||
Sbjct: 105960 gacccccgcctcactcgagcagctgaatgaagagcag 105996
Score = 117 bits (59), Expect = 1e-23
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 977 ggaaggctgcaccagccccaagtgtaaatgatgcggctgctaaaactggcggtgctccag 1036
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 115206 ggaaggctgcaccagccccaagtgtagatgatgcggctgctaaaactggcagtgctccag 115265
Query: 1037 gcaaaggccctgcccccca 1055
|||||| |||| ||||||
Sbjct: 115266 ccaaaggtcctggccccca 115284
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,316,943
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 8
Length of query: 1055
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1034
Effective length of database: 2,808,413,156
Effective search space: 2903899203304
Effective search space used: 2903899203304
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)