Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007956
(1168 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776447.1| clathrin light chain A [Bos taurus]. 355 3e-98
Alignment gi|NP_776702.1| clathrin light chain B [Bos taurus]. 245 6e-65
>ref|NP_776447.1| clathrin light chain A [Bos taurus].
Length = 243
Score = 355 bits (912), Expect = 3e-98
Identities = 190/243 (78%), Positives = 194/243 (79%), Gaps = 31/243 (12%)
Frame = +3
Query: 210 MADLDPFGAPAG-PSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXX 386
MA+LDPFG PAG P+LGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGVPAGGPALGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGSQPH 60
Query: 387 XXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 566
DAVDGV NG+YYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD
Sbjct: 61 GEPPGIPDAVDGVTNGDYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 120
Query: 567 ANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR----------------------- 677
ANSRKQEAEWKEKAIKEL+EWYARQDEQLQKTKANNR
Sbjct: 121 ANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINH 180
Query: 678 -------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 836
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP
Sbjct: 181 PCYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 240
Query: 837 LVH 845
LVH
Sbjct: 241 LVH 243
>ref|NP_776702.1| clathrin light chain B [Bos taurus].
Length = 210
Score = 245 bits (625), Expect = 6e-65
Identities = 124/206 (60%), Positives = 147/206 (71%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 401
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASG 62
Query: 402 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 581
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 ASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 122
Query: 582 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 761
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 123 MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 182
Query: 762 NPKSSKQAKDVSRMRSVLISLKQAPL 839
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 NPKSSKQCKDVSRLRSVLMSLKQTPL 208
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,131,134
Number of extensions: 765068
Number of successful extensions: 3552
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3523
Number of HSP's successfully gapped: 2
Length of query: 389
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,240,222
Effective search space: 4058463270
Effective search space used: 4058463270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007956
(1168 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866787.1| PREDICTED: similar to clathrin, light polypepti... 370 e-102
Alignment gi|XP_866825.1| PREDICTED: similar to Clathrin light chain A (L... 360 2e-99
Alignment gi|XP_866761.1| PREDICTED: similar to Clathrin light chain A (L... 359 3e-99
Alignment gi|XP_531996.2| PREDICTED: similar to Clathrin light chain A (L... 354 8e-98
Alignment gi|XP_866835.1| PREDICTED: similar to clathrin, light polypepti... 265 5e-71
Alignment gi|XP_866066.1| PREDICTED: similar to clathrin, light polypepti... 242 4e-64
Alignment gi|XP_866115.1| PREDICTED: similar to clathrin, light polypepti... 241 1e-63
Alignment gi|XP_866083.1| PREDICTED: similar to clathrin, light polypepti... 239 3e-63
Alignment gi|XP_866050.1| PREDICTED: similar to clathrin, light polypepti... 239 3e-63
Alignment gi|XP_866801.1| PREDICTED: similar to Clathrin light chain A (L... 236 4e-62
>ref|XP_866787.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 3 [Canis familiaris].
Length = 218
Score = 370 bits (950), Expect = e-102
Identities = 193/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +3
Query: 210 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 731
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 732 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|XP_866825.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 6 [Canis
familiaris].
Length = 230
Score = 360 bits (923), Expect = 2e-99
Identities = 192/230 (83%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +3
Query: 210 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 695
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 696 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_866761.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 2 [Canis
familiaris].
Length = 236
Score = 359 bits (921), Expect = 3e-99
Identities = 193/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +3
Query: 210 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 677
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 678 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|XP_531996.2| PREDICTED: similar to Clathrin light chain A (Lca) isoform 1 [Canis
familiaris].
Length = 248
Score = 354 bits (909), Expect = 8e-98
Identities = 193/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +3
Query: 210 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 677
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 678 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 821
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 822 LKQAPLVH 845
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|XP_866835.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 7 [Canis familiaris].
Length = 139
Score = 265 bits (678), Expect = 5e-71
Identities = 132/134 (98%), Positives = 134/134 (100%)
Frame = +3
Query: 444 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 623
+ESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE
Sbjct: 6 RESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 65
Query: 624 EWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRM 803
EWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRM
Sbjct: 66 EWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRM 125
Query: 804 RSVLISLKQAPLVH 845
RSVLISLKQAPLVH
Sbjct: 126 RSVLISLKQAPLVH 139
>ref|XP_866066.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
3 [Canis familiaris].
Length = 207
Score = 242 bits (618), Expect = 4e-64
Identities = 124/206 (60%), Positives = 149/206 (72%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 401
D FG + G A EEDPAAAFLAQQESEIAGIENDE F + +
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGLSNGYCHVFVLSLAGS- 61
Query: 402 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 581
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 62 --EDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 119
Query: 582 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 761
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 120 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 179
Query: 762 NPKSSKQAKDVSRMRSVLISLKQAPL 839
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 180 NPKSSKQCKDVSRLRSVLMSLKQTPL 205
>ref|XP_866115.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
5 [Canis familiaris].
Length = 211
Score = 241 bits (615), Expect = 1e-63
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 398
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAQPGPAGG 62
Query: 399 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 578
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 579 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 758
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 759 FNPKSSKQAKDVSRMRSVLISLKQAPL 839
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|XP_866083.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
4 [Canis familiaris].
Length = 213
Score = 239 bits (611), Expect = 3e-63
Identities = 125/209 (59%), Positives = 148/209 (70%), Gaps = 3/209 (1%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF---AILDXXXXXXXXXXX 392
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAHASACPP 62
Query: 393 XXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDAN 572
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA
Sbjct: 63 STAGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA 122
Query: 573 SRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARL 752
S+ E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+L
Sbjct: 123 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL 182
Query: 753 CDFNPKSSKQAKDVSRMRSVLISLKQAPL 839
CDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 CDFNPKSSKQCKDVSRLRSVLMSLKQTPL 211
>ref|XP_866050.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
2 [Canis familiaris].
Length = 208
Score = 239 bits (611), Expect = 3e-63
Identities = 124/206 (60%), Positives = 146/206 (70%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 401
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGA--PAGNSGEEEGPRYG 60
Query: 402 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 581
+ +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 61 PLGDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 120
Query: 582 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 761
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 121 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 180
Query: 762 NPKSSKQAKDVSRMRSVLISLKQAPL 839
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 181 NPKSSKQCKDVSRLRSVLMSLKQTPL 206
>ref|XP_866801.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 4 [Canis
familiaris].
Length = 178
Score = 236 bits (601), Expect = 4e-62
Identities = 144/230 (62%), Positives = 150/230 (65%), Gaps = 18/230 (7%)
Frame = +3
Query: 210 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAIL
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAIL----- 55
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DG G + EP +
Sbjct: 56 ---------------DGGAPGP-------------------QPHGEPPGVP--------- 72
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 695
DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 73 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 128
Query: 696 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,600,627
Number of extensions: 779535
Number of successful extensions: 4023
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3938
Number of HSP's successfully gapped: 14
Length of query: 389
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 284
Effective length of database: 15,374,224
Effective search space: 4366279616
Effective search space used: 4366279616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007956
(1168 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 ... 385 e-107
Alignment gi|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 ... 374 e-104
Alignment gi|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 ... 374 e-104
Alignment gi|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 ... 369 e-102
Alignment gi|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrof... 240 1e-63
Alignment gi|XP_003354235.1| PREDICTED: clathrin light chain B-like isofo... 238 4e-63
Alignment gi|XP_003123718.2| PREDICTED: clathrin light chain B-like isofo... 227 8e-60
>ref|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 [Sus scrofa].
Length = 212
Score = 385 bits (988), Expect = e-107
Identities = 196/212 (92%), Positives = 196/212 (92%)
Frame = +3
Query: 210 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 389
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 390 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 569
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 570 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 749
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 180
Query: 750 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 212
>ref|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 [Sus scrofa].
Length = 224
Score = 374 bits (961), Expect = e-104
Identities = 195/224 (87%), Positives = 196/224 (87%), Gaps = 12/224 (5%)
Frame = +3
Query: 210 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 389
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 390 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 569
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 570 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAFVNDIEE 713
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAFVNDIEE
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAFVNDIEE 180
Query: 714 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 224
>ref|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 [Sus scrofa].
Length = 230
Score = 374 bits (959), Expect = e-104
Identities = 196/230 (85%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +3
Query: 210 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 389
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 390 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 569
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 570 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAF 695
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR AAEEAF
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAF 180
Query: 696 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 [Sus scrofa].
Length = 242
Score = 369 bits (947), Expect = e-102
Identities = 196/242 (80%), Positives = 196/242 (80%), Gaps = 30/242 (12%)
Frame = +3
Query: 210 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 389
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 390 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 569
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 570 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------------ 677
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHP 180
Query: 678 ------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 839
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL
Sbjct: 181 CYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 240
Query: 840 VH 845
VH
Sbjct: 241 VH 242
>ref|XP_003353620.1| PREDICTED: clathrin light chain A [Sus scrofa].
Length = 160
Score = 240 bits (612), Expect = 1e-63
Identities = 138/212 (65%), Positives = 142/212 (66%)
Frame = +3
Query: 210 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 389
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIA---------------------- 38
Query: 390 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 569
G+ N E + +G + EP DA
Sbjct: 39 ----------GIENDEAFAILDGGAPG-------PQPHGEPPG-------------GPDA 68
Query: 570 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 749
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 69 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 128
Query: 750 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 160
>ref|XP_003354235.1| PREDICTED: clathrin light chain B-like isoform 2 [Sus scrofa].
Length = 211
Score = 238 bits (608), Expect = 4e-63
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 398
D FG + G EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62
Query: 399 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 578
+ + +NG+ +Q++NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 579 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 758
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 759 FNPKSSKQAKDVSRMRSVLISLKQAPL 839
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|XP_003123718.2| PREDICTED: clathrin light chain B-like isoform 1 [Sus scrofa].
Length = 229
Score = 227 bits (579), Expect = 8e-60
Identities = 123/225 (54%), Positives = 147/225 (65%), Gaps = 19/225 (8%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 398
D FG + G EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62
Query: 399 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 578
+ + +NG+ +Q++NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 579 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 704
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 705 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 839
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,454,169
Number of extensions: 504656
Number of successful extensions: 2297
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2255
Number of HSP's successfully gapped: 8
Length of query: 389
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 288
Effective length of database: 8,829,335
Effective search space: 2542848480
Effective search space used: 2542848480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007956
(1168 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073853.1| clathrin light chain A isoform a [Mus muscul... 369 e-102
Alignment gi|NP_001073855.1| clathrin light chain A isoform d [Mus muscul... 365 e-101
Alignment gi|NP_058040.2| clathrin light chain A isoform c [Mus musculus]. 358 6e-99
Alignment gi|NP_001073854.1| clathrin light chain A isoform b [Mus muscul... 353 1e-97
Alignment gi|NP_083146.1| clathrin light chain B [Mus musculus]. 237 1e-62
>ref|NP_001073853.1| clathrin light chain A isoform a [Mus musculus].
Length = 218
Score = 369 bits (947), Expect = e-102
Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 731
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 732 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001073855.1| clathrin light chain A isoform d [Mus musculus].
Length = 216
Score = 365 bits (936), Expect = e-101
Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPG--DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 118
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 731
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 119 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 178
Query: 732 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 179 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 216
>ref|NP_058040.2| clathrin light chain A isoform c [Mus musculus].
Length = 236
Score = 358 bits (918), Expect = 6e-99
Identities = 192/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 677
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 678 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_001073854.1| clathrin light chain A isoform b [Mus musculus].
Length = 248
Score = 353 bits (906), Expect = 1e-97
Identities = 192/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 677
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 678 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 821
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 822 LKQAPLVH 845
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_083146.1| clathrin light chain B [Mus musculus].
Length = 211
Score = 237 bits (605), Expect = 1e-62
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 398
+ FG + G A EEDPAAAFLAQQESEIAGIEND F A
Sbjct: 3 EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62
Query: 399 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 578
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122
Query: 579 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 758
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 759 FNPKSSKQAKDVSRMRSVLISLKQAPL 839
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,696,855
Number of extensions: 640952
Number of successful extensions: 2990
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2935
Number of HSP's successfully gapped: 5
Length of query: 389
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 286
Effective length of database: 12,523,851
Effective search space: 3581821386
Effective search space used: 3581821386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007956
(1168 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001824.1| clathrin light chain A isoform a [Homo sapiens]. 368 e-102
Alignment gi|NP_001171689.1| clathrin light chain A isoform d [Homo sapie... 357 9e-99
Alignment gi|NP_001070145.1| clathrin light chain A isoform c [Homo sapie... 357 2e-98
Alignment gi|NP_009027.1| clathrin light chain A isoform b [Homo sapiens]. 352 4e-97
Alignment gi|NP_001171690.1| clathrin light chain A isoform e [Homo sapie... 258 7e-69
Alignment gi|NP_001825.1| clathrin light chain B isoform a [Homo sapiens]. 241 9e-64
Alignment gi|NP_009028.1| clathrin light chain B isoform b [Homo sapiens]. 230 2e-60
Alignment gi|NP_001171691.1| clathrin light chain A isoform f [Homo sapie... 225 5e-59
>ref|NP_001824.1| clathrin light chain A isoform a [Homo sapiens].
Length = 218
Score = 368 bits (944), Expect = e-102
Identities = 192/218 (88%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 731
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 732 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001171689.1| clathrin light chain A isoform d [Homo sapiens].
Length = 230
Score = 357 bits (917), Expect = 9e-99
Identities = 191/230 (83%), Positives = 195/230 (84%), Gaps = 18/230 (7%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 695
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 696 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|NP_001070145.1| clathrin light chain A isoform c [Homo sapiens].
Length = 236
Score = 357 bits (915), Expect = 2e-98
Identities = 192/236 (81%), Positives = 195/236 (82%), Gaps = 24/236 (10%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 677
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 678 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_009027.1| clathrin light chain A isoform b [Homo sapiens].
Length = 248
Score = 352 bits (903), Expect = 4e-97
Identities = 192/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 677
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 678 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 821
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 822 LKQAPLVH 845
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_001171690.1| clathrin light chain A isoform e [Homo sapiens].
Length = 168
Score = 258 bits (659), Expect = 7e-69
Identities = 136/161 (84%), Positives = 138/161 (85%), Gaps = 6/161 (3%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 674
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
>ref|NP_001825.1| clathrin light chain B isoform a [Homo sapiens].
Length = 211
Score = 241 bits (615), Expect = 9e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 398
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 399 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 578
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 579 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 758
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 759 FNPKSSKQAKDVSRMRSVLISLKQAPL 839
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|NP_009028.1| clathrin light chain B isoform b [Homo sapiens].
Length = 229
Score = 230 bits (586), Expect = 2e-60
Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
Frame = +3
Query: 222 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 398
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 399 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 578
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 579 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 704
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 705 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 839
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>ref|NP_001171691.1| clathrin light chain A isoform f [Homo sapiens].
Length = 166
Score = 225 bits (574), Expect = 5e-59
Identities = 135/218 (61%), Positives = 142/218 (65%), Gaps = 6/218 (2%)
Frame = +3
Query: 210 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 371
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIA
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIA---------------- 44
Query: 372 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 551
G+ N E + +G + EP
Sbjct: 45 ----------------GIENDEAFAILDGGAPG-------PQPHGEPPG----------- 70
Query: 552 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 731
DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 71 --GPDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 128
Query: 732 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 845
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 166
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,887,211
Number of extensions: 766058
Number of successful extensions: 3784
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3682
Number of HSP's successfully gapped: 9
Length of query: 389
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,868,908
Effective search space: 4237638780
Effective search space used: 4237638780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007956
(1168 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 656 0.0
Sscrofa_Chr14 117 1e-23
Sscrofa_Chr17 107 1e-20
Sscrofa_Chr02 66 5e-08
>Sscrofa_Chr01
|| Length = 315321322
Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Plus
Query: 78 gcttccgtcttctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgc 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772784 gcttccgtcttctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgc 264772843
Query: 138 tgccgggcgcggttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772844 tgccgggcgcggttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagt 264772903
Query: 198 tgaacgcctgccatggctgatttagatccgttcggcgcccccgccggcccctcgctgggg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772904 tgaacgcctgccatggctgatttagatccgttcggcgcccccgccggcccctcgctgggg 264772963
Query: 258 aacggagtggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgag 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264772964 aacggagtggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgag 264773023
Query: 318 attgctggcatcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264773024 attgctggcatcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccc 264773083
Query: 378 cagccgcacggcgagccgccggggggtccgg 408
|||||||||||||||||||||||||||||||
Sbjct: 264773084 cagccgcacggcgagccgccggggggtccgg 264773114
Score = 515 bits (260), Expect = e-143
Identities = 322/340 (94%), Gaps = 2/340 (0%)
Strand = Plus / Plus
Query: 756 gactttaaccccaagtccagcaagcaggccaaagatgtctcccgcatgcgttctgtcctc 815
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 259949920 gactttaaccccaagtccagcaagcaggccaaagatgtctctcacatgtgttctgtcctc 259949979
Query: 816 atctccctcaagcagg-cccccctggtgcactgaagagccaccatgtggaaacactacat 874
| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 259949980 agctctctcaagcaggtcccccctggtgcactgaagagccacgctgtggaaacactacat 259950039
Query: 875 ctgcaatatcttaatcctactcagtgaagctcttcacagtaattggattaattatgttga 934
|| |||||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 259950040 cttcaatatcttactcctacttagtgaagctcttcacagtaattggattaattttattga 259950099
Query: 935 gttcttttggaccaaacctttttgtctttagagttgatcattgtttgtgattgcatgttt 994
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 259950100 gttcttttggaccaaacctttt-gcctttagagttgatcattgtttgtgattgcatgttt 259950158
Query: 995 ccttcaactgtgttctccctggcattcaaagaggagcggaggcccccagggaagggaggg 1054
|||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct: 259950159 ccttcaactgtgttctccctggcattcagagaggagaggaggcgcccagggaagggaggg 259950218
Query: 1055 aggcctcccaagggcagcctcaacctctgcttttgtgcat 1094
||||||||||||||||||||||||||||||||||||||||
Sbjct: 259950219 aggcctcccaagggcagcctcaacctctgcttttgtgcat 259950258
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 445 aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783240 aggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagt 264783299
Query: 505 cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264783300 cagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttg 264783359
Score = 79.8 bits (40), Expect = 3e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 408 gatgccgttgatggagtgatgaatggcgaatactaccagg 447
||||||||||||||||||||||||||||||||||||||||
Sbjct: 264780812 gatgccgttgatggagtgatgaatggcgaatactaccagg 264780851
>Sscrofa_Chr14
|| Length = 153851969
Score = 117 bits (59), Expect = 1e-23
Identities = 147/175 (84%), Gaps = 1/175 (0%)
Strand = Plus / Minus
Query: 862 ggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaattgga 921
|||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
Sbjct: 141192918 ggaaacactacatctgcagtatcttaatcctacttagtgacgctcttcacagtaattagg 141192859
Query: 922 ttaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcattgtttg 981
| ||| ||||||| |||||| ||||| | || | |||||||| | || ||| |||||
Sbjct: 141192858 tgaatcatgttgaattctttcagaccaga-ctgtccgtctttagggctggtcagagtttg 141192800
Query: 982 tgattgcatgtttccttcaactgtgttctccctggcattcaaagaggagcggagg 1036
||||||||||||||| || ||||| || ||||||||||| ||||||| |||||
Sbjct: 141192799 acattgcatgtttccttgaaatgtgtccttcctggcattcagagaggaggggagg 141192745
Score = 77.8 bits (39), Expect = 1e-11
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 720 ccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagcaag 779
|||||||| |||||| ||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 141193041 ccaggcactgagtgg-aacaggtggcccagctgtgtggctttaaccccaagtccagcaag 141192983
Query: 780 cag 782
|||
Sbjct: 141192982 cag 141192980
>Sscrofa_Chr17
|| Length = 69701581
Score = 107 bits (54), Expect = 1e-20
Identities = 113/129 (87%), Gaps = 4/129 (3%)
Strand = Plus / Minus
Query: 886 taatcctactcagtgaagctcttcacagtaattggattaattatgttgagttc-ttttgg 944
||||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||| ||
Sbjct: 20461893 taatcctcctcagtgaagtgcttcacagtgattggattaattatgttgagttcatttcgg 20461834
Query: 945 accaaacctttttgtctttagagttgatcattgtttgtgattgcatgtttccttcaactg 1004
|||||||| ||||||||| |||| |||||| |||||||||| ||| ||||||||| ||
Sbjct: 20461833 accaaacc-ttttgtcttcagagctgatcactgtttgtgatggca--cttccttcaagtg 20461777
Query: 1005 tgttctccc 1013
| |||||||
Sbjct: 20461776 tattctccc 20461768
>Sscrofa_Chr02
|| Length = 162569375
Score = 65.9 bits (33), Expect = 5e-08
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 272 cgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcga 331
||||||||||||||| || |||||| |||| ||||||||||| || || || ||||| ||
Sbjct: 83066821 cgaggaggacccggcggctgccttcctggcccagcaggagagtgaaatcgcgggcataga 83066880
Query: 332 gaacgacgaggccttcg 348
||| ||||||| |||||
Sbjct: 83066881 gaatgacgagggcttcg 83066897
Score = 65.9 bits (33), Expect = 5e-08
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 718 ccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagca 777
||||||| || |||||||| |||||||| |||||||||||| ||||||||| |||||
Sbjct: 83135914 ccccaggtacagagtgggagaaggtggcccagctgtgtgacttcaaccccaagagcagca 83135973
Query: 778 agcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcag 830
|||| |||||| || |||||| |||| || || ||||| ||||| ||||||
Sbjct: 83135974 agcaatgcaaagacgtgtcccgcctgcgctcggtgctcatgtccctgaagcag 83136026
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,381,960
Number of extensions: 232
Number of successful extensions: 232
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 9
Length of query: 1168
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1147
Effective length of database: 2,808,413,156
Effective search space: 3221249889932
Effective search space used: 3221249889932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)