Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007960
(967 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029924.1| ATP-dependent RNA helicase DDX39 [Bos taurus]. 509 e-144
Alignment gi|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus]. 493 e-139
Alignment gi|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taur... 159 3e-39
Alignment gi|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos tauru... 158 8e-39
Alignment gi|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos tau... 150 2e-36
Alignment gi|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bo... 145 7e-35
Alignment gi|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [B... 134 2e-31
Alignment gi|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [B... 132 3e-31
Alignment gi|NP_001095588.1| probable ATP-dependent RNA helicase DDX20 [B... 132 5e-31
Alignment gi|NP_001039695.1| ATP-dependent RNA helicase DDX19B [Bos tauru... 125 4e-29
>ref|NP_001029924.1| ATP-dependent RNA helicase DDX39 [Bos taurus].
Length = 427
Score = 509 bits (1312), Expect = e-144
Identities = 257/284 (90%), Positives = 260/284 (91%)
Frame = +1
Query: 115 MAEQDVXXXXXXXXXXXXXXXXXXXXXXXXKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 294
MAEQDV KKDVKGSYVSIHSSGFRDFLLKPELLRAIV
Sbjct: 1 MAEQDVENELLDYEEDEEPQAPPESAPPPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 295 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 474
DCGFEHPSEVQHECIPQAILGMD+LCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 120
Query: 475 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 654
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLK+NCPHVVVGTPGRILALVR
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVVVGTPGRILALVR 180
Query: 655 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 834
NRSLNL+NVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
Sbjct: 181 NRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 240
Query: 835 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 966
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284
>ref|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus].
Length = 428
Score = 493 bits (1268), Expect = e-139
Identities = 240/254 (94%), Positives = 251/254 (98%)
Frame = +1
Query: 205 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 384
KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91
Query: 385 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 564
GMGKTAVFVLATLQQ+EPV GQV+VLVMCHTRELAFQISKEYERFSKYMPSVKV+VFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGG 151
Query: 565 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 744
LSIKKDEEVLKKNCPH+VVGTPGRILAL RN+SLNLK++KHF+LDECDKMLEQLDMRRDV
Sbjct: 152 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211
Query: 745 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 924
QEIFR+TPHEKQ MMFSATLSKEIRPVCRKFMQDPME+FVDDETKLTLHGLQQYYVKLKD
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
Query: 925 SEKNRKLFDLLDVL 966
+EKNRKLFDLLDVL
Sbjct: 272 NEKNRKLFDLLDVL 285
>ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus].
Length = 407
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus].
Length = 406
Score = 158 bits (399), Expect = 8e-39
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 211
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
>ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus].
Length = 411
Score = 150 bits (379), Expect = 2e-36
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 1/235 (0%)
Frame = +1
Query: 265 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 444
L+ +LLR I GFE PS +Q I Q I G DV+ Q++SG GKTA F ++ LQ ++
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 445 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVG 624
+ L++ TRELA QI K YM +V+ GG ++ +D L HVV G
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAG 162
Query: 625 TPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 804
TPGR+ ++R RSL + +K VLDE D+ML + + + +++R P Q ++ SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATL 221
Query: 805 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
EI + KFM DP+ + V + +LTL G++Q++V ++ E K L DL D L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
>ref|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bos taurus].
Length = 483
Score = 145 bits (365), Expect = 7e-35
Identities = 81/234 (34%), Positives = 136/234 (58%)
Frame = +1
Query: 232 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 411
S + F D+ LK ELL I + G+E PS +Q E IP A+ G D+L +AK+G GK+ ++
Sbjct: 92 STKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 151
Query: 412 LATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 591
+ L++++ + +V+ TRELA Q+S+ + SK+M KV GG ++ +D+ +
Sbjct: 152 IPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL-RDDIM 210
Query: 592 LKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 771
+ HVV+ TPGRIL L++ + +V+ VLDE DK+L Q D + +++I P
Sbjct: 211 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPK 269
Query: 772 EKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEK 933
+Q +++SAT ++ +Q P E+ + +E LTL G+ QYY + + +K
Sbjct: 270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQK 321
>ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus].
Length = 765
Score = 134 bits (336), Expect = 2e-31
Identities = 75/232 (32%), Positives = 137/232 (59%), Gaps = 4/232 (1%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F+D L LL+AI GF+ P+ +Q CIP +LG D+ A +G GKTA F L L++
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 430 I--EPVNGQVT-VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK 600
+ +P VT VLV+ TREL Q+ ++ +++ S+ + GGL +K E L+
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFC-SITTCLAVGGLDVKSQEAALRA 307
Query: 601 NCPHVVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEK 777
P +++ TPGR++ + N S +L +++ +LDE D+ML++ ++EI R+ H +
Sbjct: 308 -APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEY-FEEQMKEIIRMCSHHR 365
Query: 778 QCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEK 933
Q M+FSAT++ E++ + +++P+ +FV+ T + L+Q +++++ + +
Sbjct: 366 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPF-LRQEFIRIRPNRE 416
>ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus].
Length = 457
Score = 132 bits (333), Expect = 3e-31
Identities = 77/240 (32%), Positives = 139/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F+D + L A G+ P+++Q E IP A+ G D++ A++G GKT F L L
Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 87
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+ ++ LV+ TRELAFQIS+++E + V+ +V GG+ L K P
Sbjct: 88 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQCAVIVGGIDSMSQSLALAKK-P 145
Query: 610 HVVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCM 786
H+V+ TPGR++ + N + NL+ +K+ V+DE D++L +D +V +I ++ P +++
Sbjct: 146 HIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDKILKVIPRDRKTF 204
Query: 787 MFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 966
+FSAT++K+++ + R +++P++ V + + T+ LQQYY+ + K+ L +L+ L
Sbjct: 205 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYLFIPSKFKDTYLVYILNEL 263
>ref|NP_001095588.1| probable ATP-dependent RNA helicase DDX20 [Bos taurus].
Length = 825
Score = 132 bits (332), Expect = 5e-31
Identities = 82/244 (33%), Positives = 125/244 (51%)
Frame = +1
Query: 220 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKT 399
G + + F LL +L + GFE PS VQ + IP G+D++ QAKSG GKT
Sbjct: 54 GDVLLAEPADFESLLLSRPVLEGLRAVGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 113
Query: 400 AVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKK 579
VF L + N +L++ TRE+A QI M ++ VF GG + +
Sbjct: 114 CVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 173
Query: 580 DEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR 759
D+ LKK C H+ VG+PGRI L+ LN +++ F+LDE DK+LE+ + + I+
Sbjct: 174 DKTRLKK-C-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 231
Query: 760 LTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNR 939
P KQ + SAT + + K+M++P V ++ +L GL+QYY +
Sbjct: 232 SLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDP-SLIGLKQYYKIVNSYPLAH 290
Query: 940 KLFD 951
K+F+
Sbjct: 291 KIFE 294
>ref|NP_001039695.1| ATP-dependent RNA helicase DDX19B [Bos taurus].
Length = 484
Score = 125 bits (315), Expect = 4e-29
Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 3/239 (1%)
Frame = +1
Query: 205 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDVLCQA 378
++D S+ S F + LKP+LL+ + GF PS++Q +P + +++ Q+
Sbjct: 86 QRDPNSPLYSVKS--FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQS 143
Query: 379 KSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 558
+SG GKTA FVLA L Q+EP N L + T ELA Q K E+ K+ P +K++
Sbjct: 144 QSGTGKTAAFVLAMLSQVEPANRHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV 203
Query: 559 GGLSIKKDEEVLKKNCPHVVVGTPGRILA-LVRNRSLNLKNVKHFVLDECDKMLEQLDMR 735
G +++ +++ + H+V+GTPG +L + + ++ K +K FVLDE D M+ +
Sbjct: 204 RGNKLERGQKISE----HIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQ 259
Query: 736 RDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYV 912
I R+ P Q ++FSAT + +K + DP + + E + TL ++QYYV
Sbjct: 260 DQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEE-TLDTIKQYYV 317
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,613,832
Number of extensions: 1106094
Number of successful extensions: 4059
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 3961
Number of HSP's successfully gapped: 48
Length of query: 322
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 220
Effective length of database: 14,306,398
Effective search space: 3147407560
Effective search space used: 3147407560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007960
(967 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533895.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) bo... 512 e-145
Alignment gi|NP_001014399.1| spliceosome RNA helicase DDX39B [Canis lupus... 491 e-139
Alignment gi|XP_860915.1| PREDICTED: similar to eukaryotic translation in... 159 3e-39
Alignment gi|XP_860879.1| PREDICTED: similar to eukaryotic translation in... 159 3e-39
Alignment gi|XP_860851.1| PREDICTED: similar to eukaryotic translation in... 159 3e-39
Alignment gi|XP_860687.1| PREDICTED: similar to eukaryotic translation in... 159 3e-39
Alignment gi|XP_545242.2| PREDICTED: similar to eukaryotic translation in... 159 3e-39
Alignment gi|XP_860499.1| PREDICTED: similar to eukaryotic translation in... 159 3e-39
Alignment gi|XP_860391.1| PREDICTED: similar to eukaryotic translation in... 159 3e-39
Alignment gi|XP_851852.1| PREDICTED: similar to eukaryotic translation in... 158 8e-39
>ref|XP_533895.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
isoform 1 [Canis familiaris].
Length = 427
Score = 512 bits (1319), Expect = e-145
Identities = 260/284 (91%), Positives = 260/284 (91%)
Frame = +1
Query: 115 MAEQDVXXXXXXXXXXXXXXXXXXXXXXXXKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 294
MAEQDV KKDVKGSYVSIHSSGFRDFLLKPELLRAIV
Sbjct: 1 MAEQDVENELLDYEEDEEPQAPPESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 295 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 474
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 120
Query: 475 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 654
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 180
Query: 655 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 834
NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
Sbjct: 181 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 240
Query: 835 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 966
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284
>ref|NP_001014399.1| spliceosome RNA helicase DDX39B [Canis lupus familiaris].
Length = 428
Score = 491 bits (1265), Expect = e-139
Identities = 239/254 (94%), Positives = 251/254 (98%)
Frame = +1
Query: 205 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 384
KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91
Query: 385 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 564
GMGKTAVFVLATLQQ+EPV GQV+VLVMCHTRELAFQISKEYERFSKYMP+VKV+VFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 151
Query: 565 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 744
LSIKKDEEVLKKNCPH+VVGTPGRILAL RN+SLNLK++KHF+LDECDKMLEQLDMRRDV
Sbjct: 152 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211
Query: 745 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 924
QEIFR+TPHEKQ MMFSATLSKEIRPVCRKFMQDPME+FVDDETKLTLHGLQQYYVKLKD
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
Query: 925 SEKNRKLFDLLDVL 966
+EKNRKLFDLLDVL
Sbjct: 272 NEKNRKLFDLLDVL 285
>ref|XP_860915.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 19 [Canis familiaris].
Length = 377
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|XP_860879.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 18 [Canis familiaris].
Length = 305
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|XP_860851.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 17 [Canis familiaris].
Length = 332
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|XP_860687.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 12 [Canis familiaris].
Length = 362
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 2 [Canis familiaris].
Length = 407
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|XP_860499.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 7 [Canis familiaris].
Length = 362
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|XP_860391.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
isoform 4 [Canis familiaris].
Length = 360
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
isoform 1 isoform 2 [Canis familiaris].
Length = 406
Score = 158 bits (399), Expect = 8e-39
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 211
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,170,449
Number of extensions: 1130599
Number of successful extensions: 4446
Number of sequences better than 1.0e-05: 121
Number of HSP's gapped: 4216
Number of HSP's successfully gapped: 122
Length of query: 322
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 219
Effective length of database: 15,440,896
Effective search space: 3381556224
Effective search space used: 3381556224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007960
(967 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354153.1| PREDICTED: ATP-dependent RNA helicase DDX39A... 512 e-145
Alignment gi|XP_003123418.2| PREDICTED: ATP-dependent RNA helicase DDX39A... 512 e-145
Alignment gi|NP_001005157.1| spliceosome RNA helicase DDX39B [Sus scrofa]. 491 e-139
Alignment gi|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scro... 159 2e-39
Alignment gi|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrof... 158 5e-39
Alignment gi|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I... 153 1e-37
Alignment gi|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scr... 150 1e-36
Alignment gi|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helica... 145 4e-35
Alignment gi|XP_003357372.1| PREDICTED: probable ATP-dependent RNA helica... 145 4e-35
Alignment gi|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-I... 135 3e-32
>ref|XP_003354153.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like isoform 2 [Sus
scrofa].
Length = 427
Score = 512 bits (1319), Expect = e-145
Identities = 260/284 (91%), Positives = 260/284 (91%)
Frame = +1
Query: 115 MAEQDVXXXXXXXXXXXXXXXXXXXXXXXXKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 294
MAEQDV KKDVKGSYVSIHSSGFRDFLLKPELLRAIV
Sbjct: 1 MAEQDVENELLDYEEDEEPQAPPENAPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 295 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 474
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 120
Query: 475 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 654
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 180
Query: 655 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 834
NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
Sbjct: 181 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 240
Query: 835 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 966
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284
>ref|XP_003123418.2| PREDICTED: ATP-dependent RNA helicase DDX39A-like isoform 1 [Sus
scrofa].
Length = 427
Score = 512 bits (1319), Expect = e-145
Identities = 260/284 (91%), Positives = 260/284 (91%)
Frame = +1
Query: 115 MAEQDVXXXXXXXXXXXXXXXXXXXXXXXXKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 294
MAEQDV KKDVKGSYVSIHSSGFRDFLLKPELLRAIV
Sbjct: 1 MAEQDVENELLDYEEDEEPQAPPENAPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 295 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 474
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 120
Query: 475 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 654
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 180
Query: 655 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 834
NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
Sbjct: 181 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 240
Query: 835 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 966
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284
>ref|NP_001005157.1| spliceosome RNA helicase DDX39B [Sus scrofa].
Length = 428
Score = 491 bits (1265), Expect = e-139
Identities = 239/254 (94%), Positives = 251/254 (98%)
Frame = +1
Query: 205 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 384
KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91
Query: 385 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 564
GMGKTAVFVLATLQQ+EPV GQV+VLVMCHTRELAFQISKEYERFSKYMP+VKV+VFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 151
Query: 565 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 744
LSIKKDEEVLKKNCPH+VVGTPGRILAL RN+SLNLK++KHF+LDECDKMLEQLDMRRDV
Sbjct: 152 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211
Query: 745 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 924
QEIFR+TPHEKQ MMFSATLSKEIRPVCRKFMQDPME+FVDDETKLTLHGLQQYYVKLKD
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
Query: 925 SEKNRKLFDLLDVL 966
+EKNRKLFDLLDVL
Sbjct: 272 NEKNRKLFDLLDVL 285
>ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa].
Length = 407
Score = 159 bits (403), Expect = 2e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa].
Length = 406
Score = 158 bits (399), Expect = 5e-39
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 211
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
>ref|XP_003361283.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Sus scrofa].
Length = 413
Score = 153 bits (387), Expect = 1e-37
Identities = 91/240 (37%), Positives = 133/240 (55%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 41 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 100
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 101 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 159
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 160 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 218
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + + LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 219 LSATMPSDVLEVTKKFMRDPIRI-LXXXXXLTLEGIRQFYINVEREEWKLDTLCDLYETL 277
>ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa].
Length = 411
Score = 150 bits (379), Expect = 1e-36
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 1/235 (0%)
Frame = +1
Query: 265 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 444
L+ +LLR I GFE PS +Q I Q I G DV+ Q++SG GKTA F ++ LQ ++
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 445 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVG 624
+ L++ TRELA QI K YM +V+ GG ++ +D L HVV G
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAG 162
Query: 625 TPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 804
TPGR+ ++R RSL + +K VLDE D+ML + + + +++R P Q ++ SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATL 221
Query: 805 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
EI + KFM DP+ + V + +LTL G++Q++V ++ E K L DL D L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
>ref|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1 [Sus
scrofa].
Length = 483
Score = 145 bits (365), Expect = 4e-35
Identities = 81/234 (34%), Positives = 136/234 (58%)
Frame = +1
Query: 232 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 411
S + F D+ LK ELL I + G+E PS +Q E IP A+ G D+L +AK+G GK+ ++
Sbjct: 92 STKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 151
Query: 412 LATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 591
+ L++++ + +V+ TRELA Q+S+ + SK+M KV GG ++ +D+ +
Sbjct: 152 IPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL-RDDIM 210
Query: 592 LKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 771
+ HVV+ TPGRIL L++ + +V+ VLDE DK+L Q D + +++I P
Sbjct: 211 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPK 269
Query: 772 EKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEK 933
+Q +++SAT ++ +Q P E+ + +E LTL G+ QYY + + +K
Sbjct: 270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQK 321
>ref|XP_003357372.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 2 [Sus
scrofa].
Length = 483
Score = 145 bits (365), Expect = 4e-35
Identities = 81/234 (34%), Positives = 136/234 (58%)
Frame = +1
Query: 232 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 411
S + F D+ LK ELL I + G+E PS +Q E IP A+ G D+L +AK+G GK+ ++
Sbjct: 92 STKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 151
Query: 412 LATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 591
+ L++++ + +V+ TRELA Q+S+ + SK+M KV GG ++ +D+ +
Sbjct: 152 IPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL-RDDIM 210
Query: 592 LKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 771
+ HVV+ TPGRIL L++ + +V+ VLDE DK+L Q D + +++I P
Sbjct: 211 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPK 269
Query: 772 EKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEK 933
+Q +++SAT ++ +Q P E+ + +E LTL G+ QYY + + +K
Sbjct: 270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQK 321
>ref|XP_003358795.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Sus scrofa].
Length = 323
Score = 135 bits (340), Expect = 3e-32
Identities = 79/205 (38%), Positives = 121/205 (59%), Gaps = 1/205 (0%)
Frame = +1
Query: 355 GMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMP 534
G DV+ QA+SG GKTA F ++ LQQ+E + LV+ TRELA QI K YM
Sbjct: 31 GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 90
Query: 535 SVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 714
+ GG +++ + + L+ PH+VVGTPGR+ ++ R L+ K +K FVLDE D+M
Sbjct: 91 AT-CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM 149
Query: 715 LEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHG 894
L + + + EIF+ Q ++ SAT+ ++ V +KFM+DP+ + V E +LTL G
Sbjct: 150 LSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEG 207
Query: 895 LQQYYVKLKDSE-KNRKLFDLLDVL 966
++Q+Y+ ++ E K L DL + L
Sbjct: 208 IKQFYINVEREEWKLDTLCDLYETL 232
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,837,118
Number of extensions: 707938
Number of successful extensions: 2695
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 2594
Number of HSP's successfully gapped: 48
Length of query: 322
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,879,129
Effective search space: 1980045767
Effective search space used: 1980045767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007960
(967 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_932099.2| ATP-dependent RNA helicase DDX39A [Mus musculus]. 506 e-144
Alignment gi|NP_062667.1| spliceosome RNA helicase Ddx39b [Mus musculus]. 491 e-139
Alignment gi|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [M... 159 2e-39
Alignment gi|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c... 159 2e-39
Alignment gi|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 ... 158 7e-39
Alignment gi|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mu... 158 7e-39
Alignment gi|NP_619610.1| eukaryotic initiation factor 4A-III [Mus muscul... 150 2e-36
Alignment gi|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-... 148 7e-36
Alignment gi|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-... 148 7e-36
Alignment gi|NP_001136206.1| predicted gene, EG668137 [Mus musculus]. 145 4e-35
>ref|NP_932099.2| ATP-dependent RNA helicase DDX39A [Mus musculus].
Length = 427
Score = 506 bits (1304), Expect = e-144
Identities = 256/284 (90%), Positives = 260/284 (91%)
Frame = +1
Query: 115 MAEQDVXXXXXXXXXXXXXXXXXXXXXXXXKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 294
MAEQDV KKDVKGSYVSIHSSGFRDFLLKPELLRAIV
Sbjct: 1 MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 295 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 474
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQV+VLVMCH
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCH 120
Query: 475 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 654
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDE+VLKKNCPHVVVGTPGRILALVR
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVR 180
Query: 655 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 834
+RSLNL+NVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
Sbjct: 181 SRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 240
Query: 835 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 966
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284
>ref|NP_062667.1| spliceosome RNA helicase Ddx39b [Mus musculus].
Length = 428
Score = 491 bits (1265), Expect = e-139
Identities = 239/254 (94%), Positives = 251/254 (98%)
Frame = +1
Query: 205 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 384
KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91
Query: 385 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 564
GMGKTAVFVLATLQQ+EPV GQV+VLVMCHTRELAFQISKEYERFSKYMP+VKV+VFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 151
Query: 565 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 744
LSIKKDEEVLKKNCPH+VVGTPGRILAL RN+SLNLK++KHF+LDECDKMLEQLDMRRDV
Sbjct: 152 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211
Query: 745 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 924
QEIFR+TPHEKQ MMFSATLSKEIRPVCRKFMQDPME+FVDDETKLTLHGLQQYYVKLKD
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
Query: 925 SEKNRKLFDLLDVL 966
+EKNRKLFDLLDVL
Sbjct: 272 NEKNRKLFDLLDVL 285
>ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus].
Length = 407
Score = 159 bits (403), Expect = 2e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c [Mus musculus].
Length = 362
Score = 159 bits (403), Expect = 2e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus].
Length = 364
Score = 158 bits (399), Expect = 7e-39
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 211
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
>ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus].
Length = 406
Score = 158 bits (399), Expect = 7e-39
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 211
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
>ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus].
Length = 411
Score = 150 bits (378), Expect = 2e-36
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 1/235 (0%)
Frame = +1
Query: 265 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 444
L+ +LLR I GFE PS +Q I Q I G DV+ Q++SG GKTA F ++ LQ ++
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQV 104
Query: 445 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVG 624
+ L++ TRELA QI K YM +V+ GG ++ +D L HVV G
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAG 162
Query: 625 TPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 804
TPGR+ ++R RSL + +K VLDE D+ML + + + +++R P Q ++ SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATL 221
Query: 805 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
EI + KFM DP+ + V + +LTL G++Q++V ++ E K L DL D L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
>ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
Length = 411
Score = 148 bits (373), Expect = 7e-36
Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 2/236 (0%)
Frame = +1
Query: 265 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 444
L+ +LLR I GFE PS +Q I Q + G DV+ Q++SG GKTA F ++ LQ ++
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQCLDIQV 104
Query: 445 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNC-PHVVV 621
+ L++ TRELA QI K YM +V+ GG ++ DE++ K + HVV
Sbjct: 105 RETQALILAPTRELAVQIQKGLLTLGDYM-NVQCHACIGGTNV--DEDIRKLDYGQHVVA 161
Query: 622 GTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT 801
GTPGR+ ++R RSL + +K VLDE D+ML + + + +++R P Q ++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 802 LSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
L EI + KFM DP+ + V + +LTL G++Q++V ++ E K L DL D L
Sbjct: 221 LPHEILEMTNKFMTDPICILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
>ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus].
Length = 411
Score = 148 bits (373), Expect = 7e-36
Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 2/236 (0%)
Frame = +1
Query: 265 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 444
L+ +LLR I GFE PS +Q I Q + G DV+ Q++SG GKTA F ++ LQ ++
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQCLDIQV 104
Query: 445 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNC-PHVVV 621
+ L++ TRELA QI K YM +V+ GG ++ DE++ K + HVV
Sbjct: 105 RETQALILAPTRELAVQIQKGLLTLGDYM-NVQCHACIGGTNV--DEDIRKLDYGQHVVA 161
Query: 622 GTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT 801
GTPGR+ ++R RSL + +K VLDE D+ML + + + +++R P Q ++ SAT
Sbjct: 162 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISAT 220
Query: 802 LSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
L EI + KFM DP+ + V + +LTL G++Q++V ++ E K L DL D L
Sbjct: 221 LPHEILEMTNKFMTDPICILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
>ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus].
Length = 411
Score = 145 bits (367), Expect = 4e-35
Identities = 89/235 (37%), Positives = 133/235 (56%), Gaps = 1/235 (0%)
Frame = +1
Query: 265 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 444
L+ +LLR I GFE PS +Q I Q + G DV+ Q++SG GKTA F ++ LQ ++
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 445 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVG 624
+ L++ TRELA QI K YM +V+ GG ++ +D L HVV G
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACVGGTNVGEDIRKLDYG-QHVVAG 162
Query: 625 TPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 804
TPGR+ ++R RSL + +K VLDE D+ML + + + +++R P Q ++ SATL
Sbjct: 163 TPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNR-GFKEQIYDVYRYLPPATQVVLVSATL 221
Query: 805 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
EI + KFM P+ + V + +LTL G++Q++V ++ E K L DL D L
Sbjct: 222 PHEILEMTNKFMTHPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,565,990
Number of extensions: 941774
Number of successful extensions: 3386
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 3277
Number of HSP's successfully gapped: 59
Length of query: 322
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 221
Effective length of database: 12,583,923
Effective search space: 2781046983
Effective search space used: 2781046983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007960
(967 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005795.2| ATP-dependent RNA helicase DDX39A [Homo sapiens]. 507 e-144
Alignment gi|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens]. 491 e-139
Alignment gi|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens]. 491 e-139
Alignment gi|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapien... 159 3e-39
Alignment gi|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 ... 158 8e-39
Alignment gi|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Ho... 158 8e-39
Alignment gi|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapie... 150 2e-36
Alignment gi|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo ... 145 7e-35
Alignment gi|NP_009135.4| probable ATP-dependent RNA helicase DDX20 [Homo... 134 1e-31
Alignment gi|NP_957518.1| probable ATP-dependent RNA helicase DDX47 isofo... 134 2e-31
>ref|NP_005795.2| ATP-dependent RNA helicase DDX39A [Homo sapiens].
Length = 427
Score = 507 bits (1306), Expect = e-144
Identities = 256/284 (90%), Positives = 259/284 (91%)
Frame = +1
Query: 115 MAEQDVXXXXXXXXXXXXXXXXXXXXXXXXKKDVKGSYVSIHSSGFRDFLLKPELLRAIV 294
MAEQDV KKD+KGSYVSIHSSGFRDFLLKPELLRAIV
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIV 60
Query: 295 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 474
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
Sbjct: 61 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH 120
Query: 475 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 654
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
Sbjct: 121 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR 180
Query: 655 NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 834
NRS +LKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSK+IRPVCRK
Sbjct: 181 NRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRK 240
Query: 835 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 966
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL
Sbjct: 241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 284
>ref|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens].
Length = 428
Score = 491 bits (1265), Expect = e-139
Identities = 239/254 (94%), Positives = 251/254 (98%)
Frame = +1
Query: 205 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 384
KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91
Query: 385 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 564
GMGKTAVFVLATLQQ+EPV GQV+VLVMCHTRELAFQISKEYERFSKYMP+VKV+VFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 151
Query: 565 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 744
LSIKKDEEVLKKNCPH+VVGTPGRILAL RN+SLNLK++KHF+LDECDKMLEQLDMRRDV
Sbjct: 152 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211
Query: 745 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 924
QEIFR+TPHEKQ MMFSATLSKEIRPVCRKFMQDPME+FVDDETKLTLHGLQQYYVKLKD
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
Query: 925 SEKNRKLFDLLDVL 966
+EKNRKLFDLLDVL
Sbjct: 272 NEKNRKLFDLLDVL 285
>ref|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens].
Length = 428
Score = 491 bits (1265), Expect = e-139
Identities = 239/254 (94%), Positives = 251/254 (98%)
Frame = +1
Query: 205 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 384
KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91
Query: 385 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 564
GMGKTAVFVLATLQQ+EPV GQV+VLVMCHTRELAFQISKEYERFSKYMP+VKV+VFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGG 151
Query: 565 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV 744
LSIKKDEEVLKKNCPH+VVGTPGRILAL RN+SLNLK++KHF+LDECDKMLEQLDMRRDV
Sbjct: 152 LSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211
Query: 745 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 924
QEIFR+TPHEKQ MMFSATLSKEIRPVCRKFMQDPME+FVDDETKLTLHGLQQYYVKLKD
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
Query: 925 SEKNRKLFDLLDVL 966
+EKNRKLFDLLDVL
Sbjct: 272 NEKNRKLFDLLDVL 285
>ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens].
Length = 407
Score = 159 bits (403), Expect = 3e-39
Identities = 95/240 (39%), Positives = 137/240 (57%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D LK LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+E + LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAP 153
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H+VVGTPGR+ ++ R L+ K +K FVLDE D+ML + + + EIF+ Q ++
Sbjct: 154 HIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVL 212
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
>ref|NP_001191439.1| eukaryotic initiation factor 4A-I isoform 2 [Homo sapiens].
Length = 347
Score = 158 bits (399), Expect = 8e-39
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 211
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
>ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens].
Length = 406
Score = 158 bits (399), Expect = 8e-39
Identities = 93/240 (38%), Positives = 135/240 (56%), Gaps = 1/240 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F D L LLR I GFE PS +Q I I G DV+ QA+SG GKTA F ++ LQQ
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
IE LV+ TRELA QI K YM GG +++ + + L+ P
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAP 152
Query: 610 HVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 789
H++VGTPGR+ ++ R L+ K +K FVLDE D+ML + + + +IF+ Q ++
Sbjct: 153 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVL 211
Query: 790 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
SAT+ ++ V +KFM+DP+ + V E +LTL G++Q+Y+ ++ E K L DL + L
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
>ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens].
Length = 411
Score = 150 bits (379), Expect = 2e-36
Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 1/235 (0%)
Frame = +1
Query: 265 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 444
L+ +LLR I GFE PS +Q I Q I G DV+ Q++SG GKTA F ++ LQ ++
Sbjct: 45 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 104
Query: 445 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVG 624
+ L++ TRELA QI K YM +V+ GG ++ +D L HVV G
Sbjct: 105 RETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAG 162
Query: 625 TPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATL 804
TPGR+ ++R RSL + +K VLDE D+ML + + + +++R P Q ++ SATL
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATL 221
Query: 805 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVL 966
EI + KFM DP+ + V + +LTL G++Q++V ++ E K L DL D L
Sbjct: 222 PHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 275
>ref|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo sapiens].
Length = 483
Score = 145 bits (365), Expect = 7e-35
Identities = 81/234 (34%), Positives = 136/234 (58%)
Frame = +1
Query: 232 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 411
S + F D+ LK ELL I + G+E PS +Q E IP A+ G D+L +AK+G GK+ ++
Sbjct: 92 STKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYL 151
Query: 412 LATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEV 591
+ L++++ + +V+ TRELA Q+S+ + SK+M KV GG ++ +D+ +
Sbjct: 152 IPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL-RDDIM 210
Query: 592 LKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPH 771
+ HVV+ TPGRIL L++ + +V+ VLDE DK+L Q D + +++I P
Sbjct: 211 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPK 269
Query: 772 EKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEK 933
+Q +++SAT ++ +Q P E+ + +E LTL G+ QYY + + +K
Sbjct: 270 NRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQK 321
>ref|NP_009135.4| probable ATP-dependent RNA helicase DDX20 [Homo sapiens].
Length = 824
Score = 134 bits (337), Expect = 1e-31
Identities = 83/244 (34%), Positives = 125/244 (51%)
Frame = +1
Query: 220 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKT 399
G + + F LL +L + GFE PS VQ + IP G+D++ QAKSG GKT
Sbjct: 54 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 113
Query: 400 AVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKK 579
VF L + N +L++ TRE+A QI M ++ VF GG + +
Sbjct: 114 CVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQ 173
Query: 580 DEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR 759
D+ LKK C H+ VG+PGRI L+ LN +++ F+LDE DK+LE+ + + I+
Sbjct: 174 DKTRLKK-C-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYS 231
Query: 760 LTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNR 939
P KQ + SAT + + K+M+DP V ++ +L GL+QYY +
Sbjct: 232 SLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIGLKQYYKVVNSYPLAH 290
Query: 940 KLFD 951
K+F+
Sbjct: 291 KVFE 294
>ref|NP_957518.1| probable ATP-dependent RNA helicase DDX47 isoform 2 [Homo sapiens].
Length = 406
Score = 134 bits (336), Expect = 2e-31
Identities = 75/236 (31%), Positives = 138/236 (58%), Gaps = 1/236 (0%)
Frame = +1
Query: 250 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 429
F+D + L A G+ P+++Q E IP A+ G D++ A++G GKT F L L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 430 IEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCP 609
+ ++ LV+ TRELAFQIS+++E + V+ +V GG+ L K P
Sbjct: 86 LLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-P 143
Query: 610 HVVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCM 786
H+++ TPGR++ + N + NL+ +K+ V+DE D++L +D +V +I ++ P +++
Sbjct: 144 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL-NMDFETEVDKILKVIPRDRKTF 202
Query: 787 MFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL 954
+FSAT++K+++ + R +++P++ V + + T+ LQQYY+ + K+++L L
Sbjct: 203 LFSATMTKKVQKLQRAALKNPVKCAVSSKYQ-TVEKLQQYYIFIPSKFKSKRLGSL 257
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,607,827
Number of extensions: 1126426
Number of successful extensions: 3999
Number of sequences better than 1.0e-05: 53
Number of HSP's gapped: 3892
Number of HSP's successfully gapped: 53
Length of query: 322
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 219
Effective length of database: 14,901,872
Effective search space: 3263509968
Effective search space used: 3263509968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007960
(967 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 426 e-117
Sscrofa_Chr07 101 7e-19
>Sscrofa_Chr02
|| Length = 162569375
Score = 426 bits (215), Expect = e-117
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 108 cagtgtcatggcggaacaggatgtggaaaatgagcttctggattatgaagaagatgaaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65120214 cagtgtcatggcggaacaggatgtggaaaatgagcttctggattatgaagaagatgaaga 65120155
Query: 168 gccccaggctcctccagagaatgctccagctccccccaagaaagatgtcaagggttccta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65120154 gccccaggctcctccagagaatgctccagctccccccaagaaagatgtcaagggttccta 65120095
Query: 228 tgtttctatccacagctctggcttccgggactttctactgaagccagagctcctgagggc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65120094 tgtttctatccacagctctggcttccgggactttctactgaagccagagctcctgagggc 65120035
Query: 288 catagtggactgtggcttcgagcatccatctgagg 322
|||||||||||||||||||||||||||||||||||
Sbjct: 65120034 catagtggactgtggcttcgagcatccatctgagg 65120000
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 542 aggtgtctgtgttctttgggggcctttctatcaagaaggatgaagaagttttgaagaaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65118186 aggtgtctgtgttctttgggggcctttctatcaagaaggatgaagaagttttgaagaaga 65118127
Query: 602 attgtccccatgtcgtggtggggacgccgggtcggatcctggcacttgtgcggaacagga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65118126 attgtccccatgtcgtggtggggacgccgggtcggatcctggcacttgtgcggaacagga 65118067
Query: 662 gcctaaacctgaagaatgtcaaacacttcgtgttggatgagtgtgacaagatgctggagc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65118066 gcctaaacctgaagaatgtcaaacacttcgtgttggatgagtgtgacaagatgctggagc 65118007
Query: 722 agttgg 727
||||||
Sbjct: 65118006 agttgg 65118001
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 322 gtccagcacgaatgtattccacaagccatcctgggcatggacgtcctatgccaggccaag 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65119870 gtccagcacgaatgtattccacaagccatcctgggcatggacgtcctatgccaggccaag 65119811
Query: 382 tcaggcatgggcaagactgcagtttttgtactggccaccctgcagcagattgagcccgtc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65119810 tcaggcatgggcaagactgcagtttttgtactggccaccctgcagcagattgagcccgtc 65119751
Query: 442 aatggacaggtg 453
||||||||||||
Sbjct: 65119750 aatggacaggtg 65119739
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 847 cccatggaagtgtttgtggacgacgaaaccaagctcacgctacatggactgcagcaatac 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65116835 cccatggaagtgtttgtggacgacgaaaccaagctcacgctacatggactgcagcaatac 65116776
Query: 907 tatgtcaaactgaaggacagtgagaagaaccgcaagcttttcgacctcctggatgtgttg 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65116775 tatgtcaaactgaaggacagtgagaagaaccgcaagcttttcgacctcctggatgtgttg 65116716
Query: 967 g 967
|
Sbjct: 65116715 g 65116715
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 727 gacatgaggcgggatgtgcaggagatcttccgcctgacaccgcacgagaagcagtgcatg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65117278 gacatgaggcgggatgtgcaggagatcttccgcctgacaccgcacgagaagcagtgcatg 65117219
Query: 787 atgttcagtgctaccctgagcaaggagatccggcccgtctgcaggaagttcatgcaagat 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65117218 atgttcagtgctaccctgagcaaggagatccggcccgtctgcaggaagttcatgcaagat 65117159
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 2 gcagtcggacgtcggagacaggaagcgcgaaccgctggagtcgggccgcgcgacccgtaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65124494 gcagtcggacgtcggagacaggaagcgcgaaccgctggagtcgggccgcgcgacccgtaa 65124435
Query: 62 ccagagtcgggagactcctcgcagcacgcggaggcgaacgagaaatcag 110
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65124434 ccagagtcgggagactcctcgcagcacgcggaggcgaacgagaaatcag 65124386
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 447 acaggtgacagtcctagtaatgtgccacactcgggagctggccttccagattagcaagga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65118654 acaggtgacagtcctagtaatgtgccacactcgggagctggccttccagattagcaagga 65118595
Query: 507 gtacgagcgcttctccaagtacatgcctagtgtcaaggtg 546
||||||||||||||||||||||||||||||||||||||||
Sbjct: 65118594 gtacgagcgcttctccaagtacatgcctagtgtcaaggtg 65118555
>Sscrofa_Chr07
|| Length = 134764511
Score = 101 bits (51), Expect = 7e-19
Identities = 99/115 (86%)
Strand = Plus / Plus
Query: 203 ccaagaaagatgtcaagggttcctatgtttctatccacagctctggcttccgggactttc 262
||||||| ||||||||||| |||||||| || ||||||||||||||||| || ||||| |
Sbjct: 27584532 ccaagaaggatgtcaagggctcctatgtctccatccacagctctggctttcgtgacttcc 27584591
Query: 263 tactgaagccagagctcctgagggccatagtggactgtggcttcgagcatccatc 317
| || ||||||||| | || ||||||| || ||||||||||| |||||||||||
Sbjct: 27584592 tgctcaagccagagttgctccgggccattgttgactgtggctttgagcatccatc 27584646
Score = 93.7 bits (47), Expect = 2e-16
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 727 gacatgaggcgggatgtgcaggagatcttccgcctgacaccgcacgagaagcagtgcatg 786
|||||| | |||||||| ||||| || || ||| |||| || |||||||||||| ||||
Sbjct: 27589230 gacatgcgtcgggatgtccaggaaatttttcgcatgaccccccacgagaagcaggtcatg 27589289
Query: 787 atgttcagtgctaccctgagcaaggagatccggcccgtctgcaggaagttcatgcaaga 845
||||||||||||||| ||||||| ||||| || || |||||| | ||||||||||||||
Sbjct: 27589290 atgttcagtgctaccttgagcaaagagattcgtccagtctgccgcaagttcatgcaaga 27589348
Score = 89.7 bits (45), Expect = 3e-15
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 325 cagcacgaatgtattccacaagccatcctgggcatggacgtcctatgccaggccaagtca 384
||||| ||||| || || || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 27585432 cagcatgaatgcatccctcaggccatcctgggaatggatgtcctatgccaggccaagtca 27585491
Query: 385 ggcatgggcaagactgcagtttttgtactggccaccctgca 425
|||||||| ||||| || || ||||| ||||| || |||||
Sbjct: 27585492 ggcatggggaagacagcggtgtttgtgctggctacactgca 27585532
Score = 79.8 bits (40), Expect = 3e-12
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 466 atgtgccacactcgggagctggccttccagattagcaaggagtacgagcgcttctccaag 525
||||| |||||||||||| |||| || ||||| ||||||||||| ||||||||||| ||
Sbjct: 27585846 atgtgtcacactcgggagttggcttttcagatcagcaaggagtatgagcgcttctctaaa 27585905
Query: 526 tacatgcctagtgtcaaggt 545
|||||||| | |||||||||
Sbjct: 27585906 tacatgcccaatgtcaaggt 27585925
Score = 60.0 bits (30), Expect = 2e-06
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 877 aagctcacgctacatggactgcagcaatactatgtcaaactgaaggacagtgagaagaac 936
||||| ||||| ||||| ||||||| ||||| || ||||||||||||| |||||||||
Sbjct: 27591420 aagctgacgctgcatgggttgcagcagtactacgtgaaactgaaggacaacgagaagaac 27591479
Query: 937 cgcaagcttttcgacctcctggatgt 962
|| ||||| || || || ||||||||
Sbjct: 27591480 cggaagctctttgatcttctggatgt 27591505
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,454,503
Number of extensions: 122
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 12
Length of query: 967
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 946
Effective length of database: 2,808,413,156
Effective search space: 2656758845576
Effective search space used: 2656758845576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)