Animal-Genome cDNA 20110601C-007966


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007966
         (1155 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001040006.1| bridging integrator 1 [Bos taurus].               448   e-126
Alignment   gi|NP_001091599.1| amphiphysin [Bos taurus].                         165   8e-41
Alignment   gi|NP_001076904.1| bridging integrator 2 [Bos taurus].               139   5e-33
Alignment   gi|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus].         100   3e-21

>ref|NP_001040006.1| bridging integrator 1 [Bos taurus].
          Length = 433

 Score =  448 bits (1152), Expect = e-126
 Identities = 242/354 (68%), Positives = 251/354 (70%), Gaps = 2/354 (0%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVL+
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLI 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
            SLEKQHGSNTFTVKAQPSDN PAKGNK          AATPEIRVNH             
Sbjct: 238  SLEKQHGSNTFTVKAQPSDNVPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGAT 297

Query: 541  XXKSPSQPTES--PAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXX 714
              KSPSQP E+   AG+   GE + +E   + + P+   E                    
Sbjct: 298  LPKSPSQPAEASEAAGAQEPGETTTSEAA-SSSLPAVVVE-------------------- 336

Query: 715  XXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDE 894
                              TFSATVNGTVESGS AGRLDLPPGFMFKVQAQHDYTATDTDE
Sbjct: 337  ------------------TFSATVNGTVESGSGAGRLDLPPGFMFKVQAQHDYTATDTDE 378

Query: 895  LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 379  LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 432


>ref|NP_001091599.1| amphiphysin [Bos taurus].
          Length = 684

 Score =  165 bits (417), Expect = 8e-41
 Identities = 89/192 (46%), Positives = 110/192 (57%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           LVD +LLT+DTYLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+               
Sbjct: 113 LVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEE 172

Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                 VFEE NVDLQEELPSLW+ RVGFYVNTF++++ LE  FHKE++ L   L +V+ 
Sbjct: 173 FQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 232

Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
            L  QH    FT++  PSD+ P +  K            +P    NH             
Sbjct: 233 KLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEASPIPSPTASPNH---TLAPASPAPV 289

Query: 541 XXKSPSQPTESP 576
             +SPSQ  + P
Sbjct: 290 RPRSPSQTRKGP 301



 Score =  100 bits (248), Expect = 3e-21
 Identities = 42/77 (54%), Positives = 60/77 (77%)
 Frame = +1

Query: 826  DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHK 1005
            ++PPGF++KV+  HD+ A ++DEL L+ GDVVLV+P  +  +QD GWL+GVKESDW Q +
Sbjct: 607  EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQFR 666

Query: 1006 ELEKCRGVFPENFTERV 1056
            +L   +G+FPENFT R+
Sbjct: 667  DLATYKGLFPENFTRRL 683


>ref|NP_001076904.1| bridging integrator 2 [Bos taurus].
          Length = 519

 Score =  139 bits (350), Expect = 5e-33
 Identities = 71/140 (50%), Positives = 88/140 (62%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           L DQ L TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q                
Sbjct: 117 LADQVLRTMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 176

Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                 VFE++N +L EELP L+NSR+G YV  FQ+I+ L + F++EMSKLN NL +V+ 
Sbjct: 177 FNKAQLVFEDLNQELLEELPVLYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 236

Query: 361 SLEKQHGSNTFTVKAQPSDN 420
            LEKQH    F VK   S N
Sbjct: 237 KLEKQHSDKVFVVKGLSSSN 256


>ref|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus].
          Length = 367

 Score =  100 bits (248), Expect = 3e-21
 Identities = 42/77 (54%), Positives = 60/77 (77%)
 Frame = +1

Query: 826  DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHK 1005
            ++PPGF++KV+  HD+ A ++DEL L+ GDVVLV+P  +  +QD GWL+GVKESDW Q +
Sbjct: 290  EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQFR 349

Query: 1006 ELEKCRGVFPENFTERV 1056
            +L   +G+FPENFT R+
Sbjct: 350  DLATYKGLFPENFTRRL 366


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,453,193
Number of extensions: 1405686
Number of successful extensions: 7336
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7296
Number of HSP's successfully gapped: 7
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007966
         (1155 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_540990.2| PREDICTED: similar to Myc box dependent interac...   258   1e-68
Alignment   gi|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis famili...   157   1e-38
Alignment   gi|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Ca...   135   1e-31

>ref|XP_540990.2| PREDICTED: similar to Myc box dependent interacting protein 1
            (Bridging integrator 1) (Amphiphysin-like protein)
            (Amphiphysin II) (Box-dependent myc-interacting
            protein-1) [Canis familiaris].
          Length = 695

 Score =  258 bits (658), Expect = 1e-68
 Identities = 131/172 (76%), Positives = 132/172 (76%), Gaps = 6/172 (3%)
 Frame = +1

Query: 559  QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
            +PTESPAGSLP GEPSA EGTFAVAWPSQTAEPGPAQPAEAS                  
Sbjct: 523  EPTESPAGSLPPGEPSATEGTFAVAWPSQTAEPGPAQPAEASEVAGGTPPAAGAQEPGET 582

Query: 739  XXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
                            TFSATVNGTVE G  AGRLDLPPGFMFKVQAQHDY ATDTDELQ
Sbjct: 583  AASEAASSSLPAVVVETFSATVNGTVEGGGGAGRLDLPPGFMFKVQAQHDYVATDTDELQ 642

Query: 901  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 643  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 694



 Score =  252 bits (643), Expect = 5e-67
 Identities = 155/267 (58%), Positives = 158/267 (59%), Gaps = 46/267 (17%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 221  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 280

Query: 181  XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
                                                 VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 281  LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 340

Query: 268  YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
            YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK  
Sbjct: 341  YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSP 400

Query: 448  XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP--- 603
                    AATPEIRVNH               KSPSQ     P   P    PS E    
Sbjct: 401  SPPPDGSPAATPEIRVNH--EPEPSAAAGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQE 458

Query: 604  ---SAAEGTF----AVAWPSQTAEPGP 663
               S  + TF    +V  PSQ   PGP
Sbjct: 459  QILSLFDDTFVPEISVTTPSQFEVPGP 485


>ref|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis familiaris].
          Length = 836

 Score =  157 bits (398), Expect = 1e-38
 Identities = 88/195 (45%), Positives = 109/195 (55%), Gaps = 3/195 (1%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           LVD +LLT+DTYLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+               
Sbjct: 129 LVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEE 188

Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                 VFEE NVDLQEELPSLW+ RVGFYVNTF++++ LE  FHKE++ L   L +V+ 
Sbjct: 189 FQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 248

Query: 361 SLEKQHGSNTFTVKAQP---SDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXX 531
            L  QH    FT++  P    D+ P +  K            +P    NH          
Sbjct: 249 KLGDQHADKAFTIQGAPRARCDSGPLRIAKTPSPPEEPSPIPSPTASPNH---TLAPASP 305

Query: 532 XXXXXKSPSQPTESP 576
                +SPSQ  + P
Sbjct: 306 APARPRSPSQTRKGP 320



 Score =  102 bits (255), Expect = 5e-22
 Identities = 43/78 (55%), Positives = 62/78 (79%)
 Frame = +1

Query: 823  LDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQH 1002
            L++PPGF++KV+  HD+ A ++DEL L+ GDVVLV+P  +  +QD GWL+GVKESDW Q+
Sbjct: 758  LEVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQY 817

Query: 1003 KELEKCRGVFPENFTERV 1056
            ++L   +G+FPENFT R+
Sbjct: 818  RDLATYKGLFPENFTRRL 835


>ref|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Canis familiaris].
          Length = 497

 Score =  135 bits (339), Expect = 1e-31
 Identities = 69/138 (50%), Positives = 89/138 (64%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           L DQAL TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q                
Sbjct: 166 LADQALRTMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 225

Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                 VFE++N +L EELP L++SR+G YV  FQ+I+ L + F++EMSKLN +L +V+ 
Sbjct: 226 FNKAQSVFEDLNQELLEELPVLYHSRIGCYVTIFQNISNLRDVFYREMSKLNHSLYEVMS 285

Query: 361 SLEKQHGSNTFTVKAQPS 414
            LEKQH +  F VK   S
Sbjct: 286 KLEKQHSNKVFVVKGVSS 303


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,455,122
Number of extensions: 1449205
Number of successful extensions: 7396
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7349
Number of HSP's successfully gapped: 6
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007966
         (1155 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus...   454   e-128
Alignment   gi|XP_003133335.2| PREDICTED: myc box-dependent-interacting pro...   258   6e-69
Alignment   gi|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa].    138   7e-33
Alignment   gi|XP_003361993.1| PREDICTED: bridging integrator 2-like, parti...   137   9e-33
Alignment   gi|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa].         101   9e-22
Alignment   gi|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143...    73   3e-13

>ref|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus scrofa].
          Length = 434

 Score =  454 bits (1168), Expect = e-128
 Identities = 246/355 (69%), Positives = 254/355 (71%), Gaps = 3/355 (0%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
            SLEKQHGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH             
Sbjct: 238  SLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGAA 297

Query: 541  XXKSPSQPTES---PAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXX 711
              KSPSQP E+     G+   GEP+A+E   + + P+   E                   
Sbjct: 298  LPKSPSQPAEASEVAGGAQEPGEPAASEAA-SSSLPAVVVE------------------- 337

Query: 712  XXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTD 891
                               TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTD
Sbjct: 338  -------------------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTD 378

Query: 892  ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 379  ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 433


>ref|XP_003133335.2| PREDICTED: myc box-dependent-interacting protein 1-like, partial
           [Sus scrofa].
          Length = 545

 Score =  258 bits (658), Expect = 6e-69
 Identities = 156/267 (58%), Positives = 158/267 (59%), Gaps = 46/267 (17%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQT               
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTAKKKDEAKIAKPVSL 177

Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
                                                VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237

Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
           YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK  
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSP 297

Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP--- 603
                   AATPEIRVNH               KSPSQ     P   P    PS E    
Sbjct: 298 SPPPDGSPAATPEIRVNHEPEPAGAATPGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQE 357

Query: 604 ---SAAEGTF----AVAWPSQTAEPGP 663
              S  + TF    +V  PSQ   PGP
Sbjct: 358 QILSLFDDTFVPEISVTTPSQFEAPGP 384



 Score =  182 bits (461), Expect = 4e-46
 Identities = 95/124 (76%), Positives = 96/124 (77%)
 Frame = +1

Query: 559 QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
           +PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS                  
Sbjct: 422 EPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASEVAGGAQEPGEPAASEAA 481

Query: 739 XXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 918
                     TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV
Sbjct: 482 SSSLPAVVVETFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 541

Query: 919 VLVI 930
           VLVI
Sbjct: 542 VLVI 545


>ref|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa].
          Length = 508

 Score =  138 bits (347), Expect = 7e-33
 Identities = 70/138 (50%), Positives = 88/138 (63%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           L DQAL TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q                
Sbjct: 90  LADQALRTMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 149

Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                 VFE++N +L EELP L+NSR+G YV  FQ+I+ L + F++EMSKLN NL +V+ 
Sbjct: 150 FNKAQIVFEDLNKELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 209

Query: 361 SLEKQHGSNTFTVKAQPS 414
            LEKQH    F VK   S
Sbjct: 210 KLEKQHSDKVFVVKGLSS 227


>ref|XP_003361993.1| PREDICTED: bridging integrator 2-like, partial [Sus scrofa].
          Length = 488

 Score =  137 bits (346), Expect = 9e-33
 Identities = 86/233 (36%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           L DQAL TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q                
Sbjct: 115 LADQALRTMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 174

Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                 VFE++N +L EELP L+NSR+  YV  FQ+I+ L + F++EMSKLN NL +V+ 
Sbjct: 175 FNKAQIVFEDLNKELLEELPILYNSRICCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 234

Query: 361 SLEKQHGSNTFTVKAQPSD-------NAPAKGNKXXXXXXXXXXAATPEIR----VNHXX 507
            LEKQH    F VK   S        ++P + +              PE++     +   
Sbjct: 235 KLEKQHSDKVFVVKGLSSGSRRSLVISSPVRTSAEELASDSAQEEGNPEMKEEPFKDQEV 294

Query: 508 XXXXXXXXXXXXXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPA 666
                          P+    +PA   PS  P A E    VA  S    PG A
Sbjct: 295 EEEAAGSSSGEEEPLPACNGPTPAQPAPSAAPEAGEAQEEVALCSPAPAPGGA 347


>ref|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa].
          Length = 712

 Score =  101 bits (251), Expect = 9e-22
 Identities = 42/77 (54%), Positives = 61/77 (79%)
 Frame = +1

Query: 826  DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHK 1005
            ++PPGF++KV+  HD+ A ++DEL L+ GDVVLV+P  +  +QD GWL+GVKESDW Q++
Sbjct: 635  EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQYR 694

Query: 1006 ELEKCRGVFPENFTERV 1056
            +L   +G+FPENFT R+
Sbjct: 695  DLATYKGLFPENFTRRL 711



 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 36/107 (33%), Positives = 51/107 (47%)
 Frame = +1

Query: 256 RVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKG 435
           RVGFYVNTF++++ LE  FHKE++ L   L +V+  L  QH    FT++  PSD+ P + 
Sbjct: 232 RVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRI 291

Query: 436 NKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQPTESP 576
            K            +P    NH               +SPSQ  + P
Sbjct: 292 AKTPSPPEEPSPIPSPTASPNH---TLAPASPAPARPRSPSQTRKGP 335


>ref|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143, partial [Sus scrofa].
          Length = 405

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +1

Query: 28  DTYLGQFPDI--KSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXXXXXXXXV 201
           + ++G+F     ++RIAKR RKLVDYDSARHH E+LQ+                     V
Sbjct: 189 EVHIGKFQHSVQQNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKV 248

Query: 202 FEEMNVDLQEELPSLWNSRVGF 267
           FEE NVDLQEELPSLW SR G+
Sbjct: 249 FEEFNVDLQEELPSLW-SRCGY 269


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,441,258
Number of extensions: 915043
Number of successful extensions: 4765
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4734
Number of HSP's successfully gapped: 10
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007966
         (1155 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001076803.1| myc box-dependent-interacting protein 1 isof...   450   e-126
Alignment   gi|NP_033798.1| myc box-dependent-interacting protein 1 isoform...   256   2e-68
Alignment   gi|NP_778172.1| amphiphysin [Mus musculus].                          165   5e-41
Alignment   gi|NP_808491.2| ubiquitin associated and SH3 domain containing,...    50   3e-06

>ref|NP_001076803.1| myc box-dependent-interacting protein 1 isoform 2 [Mus musculus].
          Length = 477

 Score =  450 bits (1157), Expect = e-126
 Identities = 243/359 (67%), Positives = 250/359 (69%), Gaps = 7/359 (1%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
            SLEKQHGSNTFTVKAQPSDNAP KGNK          AATPEIRVNH             
Sbjct: 238  SLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGAT 297

Query: 541  XXKSPSQ-----PTESPAGSLPSGEPSAAE--GTFAVAWPSQTAEPGPAQPAEASXXXXX 699
              KSPSQ     P   P    PS E    +    F  A+  + +   P+QPAEAS     
Sbjct: 298  IPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQPAEASEVVGG 357

Query: 700  XXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTA 879
                                   TFSATVNG VE  +  GRLDLPPGFMFKVQAQHDYTA
Sbjct: 358  AQEPGETAASEATSSSLPAVVVETFSATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTA 417

Query: 880  TDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            TDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 418  TDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 476


>ref|NP_033798.1| myc box-dependent-interacting protein 1 isoform 1 [Mus musculus].
          Length = 588

 Score =  256 bits (654), Expect = 2e-68
 Identities = 127/166 (76%), Positives = 131/166 (78%)
 Frame = +1

Query: 559  QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
            +PTES AG LPSGEPS+AEG+FAVAWPSQTAEPGPAQPAEAS                  
Sbjct: 422  EPTESQAGILPSGEPSSAEGSFAVAWPSQTAEPGPAQPAEASEVVGGAQEPGETAASEAT 481

Query: 739  XXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 918
                      TFSATVNG VE  +  GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV
Sbjct: 482  SSSLPAVVVETFSATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 541

Query: 919  VLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            VLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 542  VLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 587



 Score =  253 bits (646), Expect = 2e-67
 Identities = 152/267 (56%), Positives = 154/267 (57%), Gaps = 46/267 (17%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177

Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
                                                VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237

Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
           YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAP KGNK  
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSP 297

Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGE---- 600
                   AATPEIRVNH               KSPSQ     P   P    PS E    
Sbjct: 298 SPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQE 357

Query: 601 ------PSAAEGTFAVAWPSQTAEPGP 663
                   A     +V  PSQ   PGP
Sbjct: 358 QILSLFDDAFVPEISVTTPSQFEAPGP 384


>ref|NP_778172.1| amphiphysin [Mus musculus].
          Length = 686

 Score =  165 bits (418), Expect = 5e-41
 Identities = 89/192 (46%), Positives = 111/192 (57%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           LVD +LLT+DTYLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+               
Sbjct: 113 LVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEE 172

Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                 VFEE NVDLQEELPSLW+SRVGFYVNTF++++ LE  FHKE++ L   L +V+ 
Sbjct: 173 FQKAQKVFEEFNVDLQEELPSLWSSRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 232

Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
            L  QH    F+++  PSD+ P +  K            +P    NH             
Sbjct: 233 KLGDQHADKAFSIQGAPSDSGPLRIAKTPSPPEEPSPLPSPTASPNH---TLAPASPAPV 289

Query: 541 XXKSPSQPTESP 576
             +SPSQ  + P
Sbjct: 290 RPRSPSQTRKGP 301



 Score =  105 bits (261), Expect = 9e-23
 Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
 Frame = +1

Query: 790  GTVESGSAAGRL--DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEG 963
            G V++  +AG    +LPPGF++KV+  HD+ A ++DEL L+ GDVVLV+P  +  +QD G
Sbjct: 595  GAVDASLSAGDATQELPPGFLYKVETLHDFEAANSDELNLQRGDVVLVVPSDSEADQDAG 654

Query: 964  WLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            WL+GVKESDW Q+++L   +G+FPENFT R+
Sbjct: 655  WLVGVKESDWLQYRDLATYKGLFPENFTRRL 685


>ref|NP_808491.2| ubiquitin associated and SH3 domain containing, A [Mus musculus].
          Length = 624

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 28/74 (37%), Positives = 36/74 (48%)
 Frame = +1

Query: 853  VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 1032
            ++A   Y   + DEL L AGD + V P Q  EE  EGW +G+             CRG  
Sbjct: 243  LKALFQYKPQNADELMLSAGDYIFVDPTQQ-EEASEGWAIGISHR--------TGCRGFL 293

Query: 1033 PENFTERVH*GCGW 1074
            PEN+TER +    W
Sbjct: 294  PENYTERANEADTW 307


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,789,544
Number of extensions: 1146090
Number of successful extensions: 5422
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5380
Number of HSP's successfully gapped: 7
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007966
         (1155 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_647599.1| myc box-dependent-interacting protein 1 isoform...   516   e-146
Alignment   gi|NP_647595.1| myc box-dependent-interacting protein 1 isoform...   500   e-141
Alignment   gi|NP_647597.1| myc box-dependent-interacting protein 1 isoform...   495   e-140
Alignment   gi|NP_647594.1| myc box-dependent-interacting protein 1 isoform...   479   e-135
Alignment   gi|NP_647598.1| myc box-dependent-interacting protein 1 isoform...   444   e-125
Alignment   gi|NP_647600.1| myc box-dependent-interacting protein 1 isoform...   443   e-124
Alignment   gi|NP_647596.1| myc box-dependent-interacting protein 1 isoform...   434   e-121
Alignment   gi|NP_004296.1| myc box-dependent-interacting protein 1 isoform...   433   e-121
Alignment   gi|NP_647601.1| myc box-dependent-interacting protein 1 isoform...   411   e-115
Alignment   gi|NP_647593.1| myc box-dependent-interacting protein 1 isoform...   261   7e-70

>ref|NP_647599.1| myc box-dependent-interacting protein 1 isoform 7 [Homo sapiens].
          Length = 475

 Score =  516 bits (1329), Expect = e-146
 Identities = 272/358 (75%), Positives = 274/358 (76%), Gaps = 6/358 (1%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
             LEKQHGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH             
Sbjct: 238  GLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDGSP-AATPEIRVNHEPEPAGGATPGAT 296

Query: 541  XXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXX 720
              KSPSQPTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS            
Sbjct: 297  LPKSPSQPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGA 356

Query: 721  XXXXXXXXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTAT 882
                                  TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTAT
Sbjct: 357  QEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTAT 416

Query: 883  DTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            DTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 417  DTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 474


>ref|NP_647595.1| myc box-dependent-interacting protein 1 isoform 3 [Homo sapiens].
          Length = 506

 Score =  500 bits (1287), Expect = e-141
 Identities = 272/389 (69%), Positives = 274/389 (70%), Gaps = 37/389 (9%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177

Query: 181  XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
                                                 VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178  LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237

Query: 268  YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
            YVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK  
Sbjct: 238  YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNKSP 297

Query: 448  XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQPTESPAGSLPSGEPSAAEGTFA 627
                    AATPEIRVNH               KSPSQPTESPAGSLPSGEPSAAEGTFA
Sbjct: 298  SPPDGSP-AATPEIRVNHEPEPAGGATPGATLPKSPSQPTESPAGSLPSGEPSAAEGTFA 356

Query: 628  VAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TFSATVN 789
            V+WPSQTAEPGPAQPAEAS                                  TF ATVN
Sbjct: 357  VSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVN 416

Query: 790  GTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWL 969
            GTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWL
Sbjct: 417  GTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWL 476

Query: 970  MGVKESDWNQHKELEKCRGVFPENFTERV 1056
            MGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 477  MGVKESDWNQHKELEKCRGVFPENFTERV 505


>ref|NP_647597.1| myc box-dependent-interacting protein 1 isoform 5 [Homo sapiens].
          Length = 518

 Score =  495 bits (1275), Expect = e-140
 Identities = 272/401 (67%), Positives = 274/401 (68%), Gaps = 49/401 (12%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
             LEKQHGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH             
Sbjct: 238  GLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGAT 296

Query: 541  XXKS-------------------------------------------PSQPTESPAGSLP 591
              KS                                           PSQPTESPAGSLP
Sbjct: 297  LPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPTESPAGSLP 356

Query: 592  SGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXXXXXXXXXXXX 753
            SGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS                             
Sbjct: 357  SGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLP 416

Query: 754  XXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIP 933
                 TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIP
Sbjct: 417  AVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIP 476

Query: 934  FQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            FQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 477  FQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 517


>ref|NP_647594.1| myc box-dependent-interacting protein 1 isoform 2 [Homo sapiens].
          Length = 550

 Score =  479 bits (1232), Expect = e-135
 Identities = 272/433 (62%), Positives = 274/433 (63%), Gaps = 81/433 (18%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177

Query: 181  XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
                                                 VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178  LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237

Query: 268  YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
            YVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK  
Sbjct: 238  YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNKSP 297

Query: 448  XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ---------------------- 561
                    AATPEIRVNH               KSPSQ                      
Sbjct: 298  SPPDGSP-AATPEIRVNHEPEPAGGATPGATLPKSPSQFEAPGPFSEQASLLDLDFDPLP 356

Query: 562  ----------------------PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPA 675
                                  PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPA
Sbjct: 357  PVTSPVKAPTPSGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPA 416

Query: 676  EASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPP 837
            EAS                                  TF ATVNGTVE GS AGRLDLPP
Sbjct: 417  EASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPP 476

Query: 838  GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 1017
            GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK
Sbjct: 477  GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 536

Query: 1018 CRGVFPENFTERV 1056
            CRGVFPENFTERV
Sbjct: 537  CRGVFPENFTERV 549


>ref|NP_647598.1| myc box-dependent-interacting protein 1 isoform 6 [Homo sapiens].
          Length = 482

 Score =  444 bits (1141), Expect = e-125
 Identities = 251/371 (67%), Positives = 254/371 (68%), Gaps = 19/371 (5%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
             LEKQHGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH             
Sbjct: 238  GLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDGSP-AATPEIRVNHEPEPAGGATPGAT 296

Query: 541  XXKSPSQ-----PTESPAGSLPSGEP------SAAEGTF----AVAWPSQTAEP----GP 663
              KSPSQ     P   P    PS E       S  E TF    +V  PSQ AE     G 
Sbjct: 297  LPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGG 356

Query: 664  AQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGF 843
             QPA  +                            TF ATVNGTVE GS AGRLDLPPGF
Sbjct: 357  TQPAAGAQEPGETAASEAASSSLPAVVVE------TFPATVNGTVEGGSGAGRLDLPPGF 410

Query: 844  MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR 1023
            MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR
Sbjct: 411  MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR 470

Query: 1024 GVFPENFTERV 1056
            GVFPENFTERV
Sbjct: 471  GVFPENFTERV 481


>ref|NP_647600.1| myc box-dependent-interacting protein 1 isoform 9 [Homo sapiens].
          Length = 439

 Score =  443 bits (1140), Expect = e-124
 Identities = 241/352 (68%), Positives = 247/352 (70%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
             LEKQHGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH             
Sbjct: 238  GLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGAT 296

Query: 541  XXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXX 720
              KSPSQP E+            A GT   A   +  E   ++ A +S            
Sbjct: 297  LPKSPSQPAEA---------SEVAGGTQPAAGAQEPGETAASEAASSS------------ 335

Query: 721  XXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
                            TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQ
Sbjct: 336  ---------LPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 386

Query: 901  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 387  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 438


>ref|NP_647596.1| myc box-dependent-interacting protein 1 isoform 4 [Homo sapiens].
          Length = 497

 Score =  434 bits (1115), Expect = e-121
 Identities = 251/386 (65%), Positives = 254/386 (65%), Gaps = 34/386 (8%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRV 495
             LEKQHGSNTFTVKAQP               SDNAPAKGNK          AATPEIRV
Sbjct: 238  GLEKQHGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSP-AATPEIRV 296

Query: 496  NHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP------SAAEGTF----AV 630
            NH               KSPSQ     P   P    PS E       S  E TF    +V
Sbjct: 297  NHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISV 356

Query: 631  AWPSQTAEP----GPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTV 798
              PSQ AE     G  QPA  +                            TF ATVNGTV
Sbjct: 357  TTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE------TFPATVNGTV 410

Query: 799  ESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 978
            E GS AGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV
Sbjct: 411  EGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 470

Query: 979  KESDWNQHKELEKCRGVFPENFTERV 1056
            KESDWNQHKELEKCRGVFPENFTERV
Sbjct: 471  KESDWNQHKELEKCRGVFPENFTERV 496


>ref|NP_004296.1| myc box-dependent-interacting protein 1 isoform 8 [Homo sapiens].
          Length = 454

 Score =  433 bits (1114), Expect = e-121
 Identities = 241/367 (65%), Positives = 247/367 (67%), Gaps = 15/367 (4%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRV 495
             LEKQHGSNTFTVKAQP               SDNAPAKGNK          AATPEIRV
Sbjct: 238  GLEKQHGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSP-AATPEIRV 296

Query: 496  NHXXXXXXXXXXXXXXXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPA 675
            NH               KSPSQP E+            A GT   A   +  E   ++ A
Sbjct: 297  NHEPEPAGGATPGATLPKSPSQPAEAS---------EVAGGTQPAAGAQEPGETAASEAA 347

Query: 676  EASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKV 855
             +S                            TF ATVNGTVE GS AGRLDLPPGFMFKV
Sbjct: 348  SSSLPAVVVE---------------------TFPATVNGTVEGGSGAGRLDLPPGFMFKV 386

Query: 856  QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 1035
            QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP
Sbjct: 387  QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 446

Query: 1036 ENFTERV 1056
            ENFTERV
Sbjct: 447  ENFTERV 453


>ref|NP_647601.1| myc box-dependent-interacting protein 1 isoform 10 [Homo sapiens].
          Length = 409

 Score =  411 bits (1056), Expect = e-115
 Identities = 230/352 (65%), Positives = 234/352 (66%)
 Frame = +1

Query: 1    LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
            LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118  LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177

Query: 181  XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
                  VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178  LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237

Query: 361  SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
             LEKQHGSNTFTVKAQPSDNAPAKGNK          AATPEIRVNH             
Sbjct: 238  GLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGAT 296

Query: 541  XXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXX 720
              KSPSQ                       + P+   E  PA                  
Sbjct: 297  LPKSPSQS----------------------SLPAVVVETFPA------------------ 316

Query: 721  XXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
                            T + TV G    GS AGRLDLPPGFMFKVQAQHDYTATDTDELQ
Sbjct: 317  ----------------TVNGTVEG----GSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 356

Query: 901  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 357  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 408


>ref|NP_647593.1| myc box-dependent-interacting protein 1 isoform 1 [Homo sapiens].
          Length = 593

 Score =  261 bits (668), Expect = 7e-70
 Identities = 133/172 (77%), Positives = 135/172 (78%), Gaps = 6/172 (3%)
 Frame = +1

Query: 559  QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
            +PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS                  
Sbjct: 421  EPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGET 480

Query: 739  XXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
                            TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQ
Sbjct: 481  AASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 540

Query: 901  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
            LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 541  LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 592



 Score =  252 bits (643), Expect = 5e-67
 Identities = 155/267 (58%), Positives = 157/267 (58%), Gaps = 46/267 (17%)
 Frame = +1

Query: 1   LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
           LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT               
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177

Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
                                                VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237

Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
           YVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK  
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNK-S 296

Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP--- 603
                   AATPEIRVNH               KSPSQ     P   P    PS E    
Sbjct: 297 PSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQE 356

Query: 604 ---SAAEGTF----AVAWPSQTAEPGP 663
              S  E TF    +V  PSQ   PGP
Sbjct: 357 QILSLFEDTFVPEISVTTPSQFEAPGP 383


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,323,654
Number of extensions: 1404342
Number of successful extensions: 6991
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6916
Number of HSP's successfully gapped: 23
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007966
         (1155 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         299   2e-78

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                            
Query: 411      cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 470
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050203 cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 29050262

                                                                            
Query: 471      tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 530
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050263 tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 29050322

                                               
Query: 531      tggggcagccctccccaagtccccgtcccag 561
                |||||||||||||||||||||||||||||||
Sbjct: 29050323 tggggcagccctccccaagtccccgtcccag 29050353



 Score =  226 bits (114), Expect = 2e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                            
Query: 742      agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtggag 801
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056770 agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtggag 29056829

                                                                      
Query: 802      agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 855
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056830 agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 29056883



 Score =  220 bits (111), Expect = 1e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 59       agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 118
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040680 agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 29040739

                                                                   
Query: 119      ttgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 169
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040740 ttgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 29040790



 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                            
Query: 560      agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 619
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055643 agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 29055702

                                                                  
Query: 620      cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 669
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055703 cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 29055752



 Score =  174 bits (88), Expect = 7e-41
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                            
Query: 167      aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 226
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045538 aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 29045597

                                            
Query: 227      aggaggagctgccgtccctgtggaacag 254
                ||||||||||||||||||||||||||||
Sbjct: 29045598 aggaggagctgccgtccctgtggaacag 29045625



 Score =  168 bits (85), Expect = 4e-39
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                            
Query: 329      agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 388
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29047353 agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 29047412

                                         
Query: 389      ccttcacggtcaaggcccagcccag 413
                |||||||||||||||||||||||||
Sbjct: 29047413 ccttcacggtcaaggcccagcccag 29047437



 Score =  165 bits (83), Expect = 7e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                            
Query: 851      aggtgcaggcccagcacgactacacggccactgacacagacgagctgcaactcaaggctg 910
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29057103 aggtgcaggcccagcacgactacacggccactgacacagacgagctgcaactcaaggctg 29057162

                                       
Query: 911      gagacgtggtgctggtgatcccc 933
                |||||||||||||||||||||||
Sbjct: 29057163 gagacgtggtgctggtgatcccc 29057185



 Score =  159 bits (80), Expect = 4e-36
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                            
Query: 251      acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 310
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045770 acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 29045829

                                    
Query: 311      tccacaaggaaatgagtaag 330
                ||||||||||||||||||||
Sbjct: 29045830 tccacaaggaaatgagtaag 29045849



 Score =  143 bits (72), Expect = 2e-31
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                            
Query: 670      ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 729
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056486 ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 29056545

                            
Query: 730      gaagcagcctcc 741
                ||||||||||||
Sbjct: 29056546 gaagcagcctcc 29056557



 Score =  119 bits (60), Expect = 4e-24
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ctggtggaccaggcgctgctgaccatggacacgtacctgggccagttcccggacatcaag 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29039676 ctggtggaccaggcgctgctgaccatggacacgtacctgggccagttcccggacatcaag 29039735


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,278,213
Number of extensions: 281
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 10
Length of query: 1155
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1134
Effective length of database: 2,808,413,156
Effective search space: 3184740518904
Effective search space used: 3184740518904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)