Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007966
(1155 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040006.1| bridging integrator 1 [Bos taurus]. 448 e-126
Alignment gi|NP_001091599.1| amphiphysin [Bos taurus]. 165 8e-41
Alignment gi|NP_001076904.1| bridging integrator 2 [Bos taurus]. 139 5e-33
Alignment gi|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus]. 100 3e-21
>ref|NP_001040006.1| bridging integrator 1 [Bos taurus].
Length = 433
Score = 448 bits (1152), Expect = e-126
Identities = 242/354 (68%), Positives = 251/354 (70%), Gaps = 2/354 (0%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVL+
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLI 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
SLEKQHGSNTFTVKAQPSDN PAKGNK AATPEIRVNH
Sbjct: 238 SLEKQHGSNTFTVKAQPSDNVPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGAT 297
Query: 541 XXKSPSQPTES--PAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXX 714
KSPSQP E+ AG+ GE + +E + + P+ E
Sbjct: 298 LPKSPSQPAEASEAAGAQEPGETTTSEAA-SSSLPAVVVE-------------------- 336
Query: 715 XXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDE 894
TFSATVNGTVESGS AGRLDLPPGFMFKVQAQHDYTATDTDE
Sbjct: 337 ------------------TFSATVNGTVESGSGAGRLDLPPGFMFKVQAQHDYTATDTDE 378
Query: 895 LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 379 LQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 432
>ref|NP_001091599.1| amphiphysin [Bos taurus].
Length = 684
Score = 165 bits (417), Expect = 8e-41
Identities = 89/192 (46%), Positives = 110/192 (57%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVD +LLT+DTYLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+
Sbjct: 113 LVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEE 172
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEE NVDLQEELPSLW+ RVGFYVNTF++++ LE FHKE++ L L +V+
Sbjct: 173 FQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 232
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
L QH FT++ PSD+ P + K +P NH
Sbjct: 233 KLGDQHADKAFTIQGAPSDSGPLRIAKTPSPPEEASPIPSPTASPNH---TLAPASPAPV 289
Query: 541 XXKSPSQPTESP 576
+SPSQ + P
Sbjct: 290 RPRSPSQTRKGP 301
Score = 100 bits (248), Expect = 3e-21
Identities = 42/77 (54%), Positives = 60/77 (77%)
Frame = +1
Query: 826 DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHK 1005
++PPGF++KV+ HD+ A ++DEL L+ GDVVLV+P + +QD GWL+GVKESDW Q +
Sbjct: 607 EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQFR 666
Query: 1006 ELEKCRGVFPENFTERV 1056
+L +G+FPENFT R+
Sbjct: 667 DLATYKGLFPENFTRRL 683
>ref|NP_001076904.1| bridging integrator 2 [Bos taurus].
Length = 519
Score = 139 bits (350), Expect = 5e-33
Identities = 71/140 (50%), Positives = 88/140 (62%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
L DQ L TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q
Sbjct: 117 LADQVLRTMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 176
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFE++N +L EELP L+NSR+G YV FQ+I+ L + F++EMSKLN NL +V+
Sbjct: 177 FNKAQLVFEDLNQELLEELPVLYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 236
Query: 361 SLEKQHGSNTFTVKAQPSDN 420
LEKQH F VK S N
Sbjct: 237 KLEKQHSDKVFVVKGLSSSN 256
>ref|XP_002704169.1| PREDICTED: amphiphysin-like [Bos taurus].
Length = 367
Score = 100 bits (248), Expect = 3e-21
Identities = 42/77 (54%), Positives = 60/77 (77%)
Frame = +1
Query: 826 DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHK 1005
++PPGF++KV+ HD+ A ++DEL L+ GDVVLV+P + +QD GWL+GVKESDW Q +
Sbjct: 290 EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQFR 349
Query: 1006 ELEKCRGVFPENFTERV 1056
+L +G+FPENFT R+
Sbjct: 350 DLATYKGLFPENFTRRL 366
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.314 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,453,193
Number of extensions: 1405686
Number of successful extensions: 7336
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7296
Number of HSP's successfully gapped: 7
Length of query: 385
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,240,222
Effective search space: 4001502382
Effective search space used: 4001502382
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007966
(1155 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540990.2| PREDICTED: similar to Myc box dependent interac... 258 1e-68
Alignment gi|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis famili... 157 1e-38
Alignment gi|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Ca... 135 1e-31
>ref|XP_540990.2| PREDICTED: similar to Myc box dependent interacting protein 1
(Bridging integrator 1) (Amphiphysin-like protein)
(Amphiphysin II) (Box-dependent myc-interacting
protein-1) [Canis familiaris].
Length = 695
Score = 258 bits (658), Expect = 1e-68
Identities = 131/172 (76%), Positives = 132/172 (76%), Gaps = 6/172 (3%)
Frame = +1
Query: 559 QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
+PTESPAGSLP GEPSA EGTFAVAWPSQTAEPGPAQPAEAS
Sbjct: 523 EPTESPAGSLPPGEPSATEGTFAVAWPSQTAEPGPAQPAEASEVAGGTPPAAGAQEPGET 582
Query: 739 XXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
TFSATVNGTVE G AGRLDLPPGFMFKVQAQHDY ATDTDELQ
Sbjct: 583 AASEAASSSLPAVVVETFSATVNGTVEGGGGAGRLDLPPGFMFKVQAQHDYVATDTDELQ 642
Query: 901 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 643 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 694
Score = 252 bits (643), Expect = 5e-67
Identities = 155/267 (58%), Positives = 158/267 (59%), Gaps = 46/267 (17%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 221 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 280
Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 281 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 340
Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 341 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSP 400
Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP--- 603
AATPEIRVNH KSPSQ P P PS E
Sbjct: 401 SPPPDGSPAATPEIRVNH--EPEPSAAAGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQE 458
Query: 604 ---SAAEGTF----AVAWPSQTAEPGP 663
S + TF +V PSQ PGP
Sbjct: 459 QILSLFDDTFVPEISVTTPSQFEVPGP 485
>ref|XP_533085.2| PREDICTED: similar to Amphiphysin [Canis familiaris].
Length = 836
Score = 157 bits (398), Expect = 1e-38
Identities = 88/195 (45%), Positives = 109/195 (55%), Gaps = 3/195 (1%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVD +LLT+DTYLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+
Sbjct: 129 LVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEE 188
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEE NVDLQEELPSLW+ RVGFYVNTF++++ LE FHKE++ L L +V+
Sbjct: 189 FQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 248
Query: 361 SLEKQHGSNTFTVKAQP---SDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXX 531
L QH FT++ P D+ P + K +P NH
Sbjct: 249 KLGDQHADKAFTIQGAPRARCDSGPLRIAKTPSPPEEPSPIPSPTASPNH---TLAPASP 305
Query: 532 XXXXXKSPSQPTESP 576
+SPSQ + P
Sbjct: 306 APARPRSPSQTRKGP 320
Score = 102 bits (255), Expect = 5e-22
Identities = 43/78 (55%), Positives = 62/78 (79%)
Frame = +1
Query: 823 LDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQH 1002
L++PPGF++KV+ HD+ A ++DEL L+ GDVVLV+P + +QD GWL+GVKESDW Q+
Sbjct: 758 LEVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQY 817
Query: 1003 KELEKCRGVFPENFTERV 1056
++L +G+FPENFT R+
Sbjct: 818 RDLATYKGLFPENFTRRL 835
>ref|XP_543665.2| PREDICTED: similar to bridging integrator 2 [Canis familiaris].
Length = 497
Score = 135 bits (339), Expect = 1e-31
Identities = 69/138 (50%), Positives = 89/138 (64%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
L DQAL TM+ Y+ QF +IK RIAKRGRKLVDYDSARHH E++Q
Sbjct: 166 LADQALRTMENYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 225
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFE++N +L EELP L++SR+G YV FQ+I+ L + F++EMSKLN +L +V+
Sbjct: 226 FNKAQSVFEDLNQELLEELPVLYHSRIGCYVTIFQNISNLRDVFYREMSKLNHSLYEVMS 285
Query: 361 SLEKQHGSNTFTVKAQPS 414
LEKQH + F VK S
Sbjct: 286 KLEKQHSNKVFVVKGVSS 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.314 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,455,122
Number of extensions: 1449205
Number of successful extensions: 7396
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7349
Number of HSP's successfully gapped: 6
Length of query: 385
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 280
Effective length of database: 15,374,224
Effective search space: 4304782720
Effective search space used: 4304782720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007966
(1155 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus... 454 e-128
Alignment gi|XP_003133335.2| PREDICTED: myc box-dependent-interacting pro... 258 6e-69
Alignment gi|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa]. 138 7e-33
Alignment gi|XP_003361993.1| PREDICTED: bridging integrator 2-like, parti... 137 9e-33
Alignment gi|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa]. 101 9e-22
Alignment gi|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143... 73 3e-13
>ref|NP_001090909.1| myc box-dependent-interacting protein 1 [Sus scrofa].
Length = 434
Score = 454 bits (1168), Expect = e-128
Identities = 246/355 (69%), Positives = 254/355 (71%), Gaps = 3/355 (0%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
SLEKQHGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH
Sbjct: 238 SLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPPDGSPAATPEIRVNHEPEPAGAATPGAA 297
Query: 541 XXKSPSQPTES---PAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXX 711
KSPSQP E+ G+ GEP+A+E + + P+ E
Sbjct: 298 LPKSPSQPAEASEVAGGAQEPGEPAASEAA-SSSLPAVVVE------------------- 337
Query: 712 XXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTD 891
TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTD
Sbjct: 338 -------------------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTD 378
Query: 892 ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 379 ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 433
>ref|XP_003133335.2| PREDICTED: myc box-dependent-interacting protein 1-like, partial
[Sus scrofa].
Length = 545
Score = 258 bits (658), Expect = 6e-69
Identities = 156/267 (58%), Positives = 158/267 (59%), Gaps = 46/267 (17%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTAKKKDEAKIAKPVSL 177
Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237
Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKSP 297
Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP--- 603
AATPEIRVNH KSPSQ P P PS E
Sbjct: 298 SPPPDGSPAATPEIRVNHEPEPAGAATPGAALPKSPSQLRKGPPVPPPPKHTPSKEVKQE 357
Query: 604 ---SAAEGTF----AVAWPSQTAEPGP 663
S + TF +V PSQ PGP
Sbjct: 358 QILSLFDDTFVPEISVTTPSQFEAPGP 384
Score = 182 bits (461), Expect = 4e-46
Identities = 95/124 (76%), Positives = 96/124 (77%)
Frame = +1
Query: 559 QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
+PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS
Sbjct: 422 EPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASEVAGGAQEPGEPAASEAA 481
Query: 739 XXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 918
TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV
Sbjct: 482 SSSLPAVVVETFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 541
Query: 919 VLVI 930
VLVI
Sbjct: 542 VLVI 545
>ref|XP_003126186.1| PREDICTED: bridging integrator 2 [Sus scrofa].
Length = 508
Score = 138 bits (347), Expect = 7e-33
Identities = 70/138 (50%), Positives = 88/138 (63%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
L DQAL TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q
Sbjct: 90 LADQALRTMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 149
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFE++N +L EELP L+NSR+G YV FQ+I+ L + F++EMSKLN NL +V+
Sbjct: 150 FNKAQIVFEDLNKELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 209
Query: 361 SLEKQHGSNTFTVKAQPS 414
LEKQH F VK S
Sbjct: 210 KLEKQHSDKVFVVKGLSS 227
>ref|XP_003361993.1| PREDICTED: bridging integrator 2-like, partial [Sus scrofa].
Length = 488
Score = 137 bits (346), Expect = 9e-33
Identities = 86/233 (36%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
L DQAL TM+ Y+ QF ++K RIAKRGRKLVDYDSARHH E++Q
Sbjct: 115 LADQALRTMENYVAQFSEVKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEE 174
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFE++N +L EELP L+NSR+ YV FQ+I+ L + F++EMSKLN NL +V+
Sbjct: 175 FNKAQIVFEDLNKELLEELPILYNSRICCYVTIFQNISNLRDVFYREMSKLNHNLYEVMS 234
Query: 361 SLEKQHGSNTFTVKAQPSD-------NAPAKGNKXXXXXXXXXXAATPEIR----VNHXX 507
LEKQH F VK S ++P + + PE++ +
Sbjct: 235 KLEKQHSDKVFVVKGLSSGSRRSLVISSPVRTSAEELASDSAQEEGNPEMKEEPFKDQEV 294
Query: 508 XXXXXXXXXXXXXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPA 666
P+ +PA PS P A E VA S PG A
Sbjct: 295 EEEAAGSSSGEEEPLPACNGPTPAQPAPSAAPEAGEAQEEVALCSPAPAPGGA 347
>ref|XP_003357576.1| PREDICTED: amphiphysin-like [Sus scrofa].
Length = 712
Score = 101 bits (251), Expect = 9e-22
Identities = 42/77 (54%), Positives = 61/77 (79%)
Frame = +1
Query: 826 DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHK 1005
++PPGF++KV+ HD+ A ++DEL L+ GDVVLV+P + +QD GWL+GVKESDW Q++
Sbjct: 635 EVPPGFLYKVETLHDFEAANSDELTLQRGDVVLVVPSDSEADQDAGWLVGVKESDWLQYR 694
Query: 1006 ELEKCRGVFPENFTERV 1056
+L +G+FPENFT R+
Sbjct: 695 DLATYKGLFPENFTRRL 711
Score = 65.5 bits (158), Expect = 5e-11
Identities = 36/107 (33%), Positives = 51/107 (47%)
Frame = +1
Query: 256 RVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKG 435
RVGFYVNTF++++ LE FHKE++ L L +V+ L QH FT++ PSD+ P +
Sbjct: 232 RVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLGDQHADKAFTIQGAPSDSGPLRI 291
Query: 436 NKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQPTESP 576
K +P NH +SPSQ + P
Sbjct: 292 AKTPSPPEEPSPIPSPTASPNH---TLAPASPAPARPRSPSQTRKGP 335
>ref|XP_003357575.1| PREDICTED: hypothetical protein LOC100626143, partial [Sus scrofa].
Length = 405
Score = 73.2 bits (178), Expect = 3e-13
Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +1
Query: 28 DTYLGQFPDI--KSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXXXXXXXXV 201
+ ++G+F ++RIAKR RKLVDYDSARHH E+LQ+ V
Sbjct: 189 EVHIGKFQHSVQQNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKV 248
Query: 202 FEEMNVDLQEELPSLWNSRVGF 267
FEE NVDLQEELPSLW SR G+
Sbjct: 249 FEEFNVDLQEELPSLW-SRCGY 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.314 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,441,258
Number of extensions: 915043
Number of successful extensions: 4765
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4734
Number of HSP's successfully gapped: 10
Length of query: 385
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 284
Effective length of database: 8,829,335
Effective search space: 2507531140
Effective search space used: 2507531140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007966
(1155 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076803.1| myc box-dependent-interacting protein 1 isof... 450 e-126
Alignment gi|NP_033798.1| myc box-dependent-interacting protein 1 isoform... 256 2e-68
Alignment gi|NP_778172.1| amphiphysin [Mus musculus]. 165 5e-41
Alignment gi|NP_808491.2| ubiquitin associated and SH3 domain containing,... 50 3e-06
>ref|NP_001076803.1| myc box-dependent-interacting protein 1 isoform 2 [Mus musculus].
Length = 477
Score = 450 bits (1157), Expect = e-126
Identities = 243/359 (67%), Positives = 250/359 (69%), Gaps = 7/359 (1%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
SLEKQHGSNTFTVKAQPSDNAP KGNK AATPEIRVNH
Sbjct: 238 SLEKQHGSNTFTVKAQPSDNAPEKGNKSPSPPPDGSPAATPEIRVNHEPEPASGASPGAT 297
Query: 541 XXKSPSQ-----PTESPAGSLPSGEPSAAE--GTFAVAWPSQTAEPGPAQPAEASXXXXX 699
KSPSQ P P PS E + F A+ + + P+QPAEAS
Sbjct: 298 IPKSPSQLRKGPPVPPPPKHTPSKEMKQEQILSLFDDAFVPEISVTTPSQPAEASEVVGG 357
Query: 700 XXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTA 879
TFSATVNG VE + GRLDLPPGFMFKVQAQHDYTA
Sbjct: 358 AQEPGETAASEATSSSLPAVVVETFSATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTA 417
Query: 880 TDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
TDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 418 TDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 476
>ref|NP_033798.1| myc box-dependent-interacting protein 1 isoform 1 [Mus musculus].
Length = 588
Score = 256 bits (654), Expect = 2e-68
Identities = 127/166 (76%), Positives = 131/166 (78%)
Frame = +1
Query: 559 QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
+PTES AG LPSGEPS+AEG+FAVAWPSQTAEPGPAQPAEAS
Sbjct: 422 EPTESQAGILPSGEPSSAEGSFAVAWPSQTAEPGPAQPAEASEVVGGAQEPGETAASEAT 481
Query: 739 XXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 918
TFSATVNG VE + GRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV
Sbjct: 482 SSSLPAVVVETFSATVNGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDV 541
Query: 919 VLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
VLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 542 VLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 587
Score = 253 bits (646), Expect = 2e-67
Identities = 152/267 (56%), Positives = 154/267 (57%), Gaps = 46/267 (17%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177
Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237
Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAP KGNK
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPEKGNKSP 297
Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGE---- 600
AATPEIRVNH KSPSQ P P PS E
Sbjct: 298 SPPPDGSPAATPEIRVNHEPEPASGASPGATIPKSPSQLRKGPPVPPPPKHTPSKEMKQE 357
Query: 601 ------PSAAEGTFAVAWPSQTAEPGP 663
A +V PSQ PGP
Sbjct: 358 QILSLFDDAFVPEISVTTPSQFEAPGP 384
>ref|NP_778172.1| amphiphysin [Mus musculus].
Length = 686
Score = 165 bits (418), Expect = 5e-41
Identities = 89/192 (46%), Positives = 111/192 (57%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVD +LLT+DTYLGQFPDIK+RIAKR RKLVDYDSARHH E+LQ+
Sbjct: 113 LVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEE 172
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEE NVDLQEELPSLW+SRVGFYVNTF++++ LE FHKE++ L L +V+
Sbjct: 173 FQKAQKVFEEFNVDLQEELPSLWSSRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMT 232
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
L QH F+++ PSD+ P + K +P NH
Sbjct: 233 KLGDQHADKAFSIQGAPSDSGPLRIAKTPSPPEEPSPLPSPTASPNH---TLAPASPAPV 289
Query: 541 XXKSPSQPTESP 576
+SPSQ + P
Sbjct: 290 RPRSPSQTRKGP 301
Score = 105 bits (261), Expect = 9e-23
Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 2/91 (2%)
Frame = +1
Query: 790 GTVESGSAAGRL--DLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEG 963
G V++ +AG +LPPGF++KV+ HD+ A ++DEL L+ GDVVLV+P + +QD G
Sbjct: 595 GAVDASLSAGDATQELPPGFLYKVETLHDFEAANSDELNLQRGDVVLVVPSDSEADQDAG 654
Query: 964 WLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
WL+GVKESDW Q+++L +G+FPENFT R+
Sbjct: 655 WLVGVKESDWLQYRDLATYKGLFPENFTRRL 685
>ref|NP_808491.2| ubiquitin associated and SH3 domain containing, A [Mus musculus].
Length = 624
Score = 50.4 bits (119), Expect = 3e-06
Identities = 28/74 (37%), Positives = 36/74 (48%)
Frame = +1
Query: 853 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 1032
++A Y + DEL L AGD + V P Q EE EGW +G+ CRG
Sbjct: 243 LKALFQYKPQNADELMLSAGDYIFVDPTQQ-EEASEGWAIGISHR--------TGCRGFL 293
Query: 1033 PENFTERVH*GCGW 1074
PEN+TER + W
Sbjct: 294 PENYTERANEADTW 307
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.314 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,789,544
Number of extensions: 1146090
Number of successful extensions: 5422
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5380
Number of HSP's successfully gapped: 7
Length of query: 385
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 282
Effective length of database: 12,523,851
Effective search space: 3531725982
Effective search space used: 3531725982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007966
(1155 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_647599.1| myc box-dependent-interacting protein 1 isoform... 516 e-146
Alignment gi|NP_647595.1| myc box-dependent-interacting protein 1 isoform... 500 e-141
Alignment gi|NP_647597.1| myc box-dependent-interacting protein 1 isoform... 495 e-140
Alignment gi|NP_647594.1| myc box-dependent-interacting protein 1 isoform... 479 e-135
Alignment gi|NP_647598.1| myc box-dependent-interacting protein 1 isoform... 444 e-125
Alignment gi|NP_647600.1| myc box-dependent-interacting protein 1 isoform... 443 e-124
Alignment gi|NP_647596.1| myc box-dependent-interacting protein 1 isoform... 434 e-121
Alignment gi|NP_004296.1| myc box-dependent-interacting protein 1 isoform... 433 e-121
Alignment gi|NP_647601.1| myc box-dependent-interacting protein 1 isoform... 411 e-115
Alignment gi|NP_647593.1| myc box-dependent-interacting protein 1 isoform... 261 7e-70
>ref|NP_647599.1| myc box-dependent-interacting protein 1 isoform 7 [Homo sapiens].
Length = 475
Score = 516 bits (1329), Expect = e-146
Identities = 272/358 (75%), Positives = 274/358 (76%), Gaps = 6/358 (1%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
LEKQHGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH
Sbjct: 238 GLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDGSP-AATPEIRVNHEPEPAGGATPGAT 296
Query: 541 XXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXX 720
KSPSQPTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS
Sbjct: 297 LPKSPSQPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGA 356
Query: 721 XXXXXXXXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTAT 882
TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTAT
Sbjct: 357 QEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTAT 416
Query: 883 DTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
DTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 417 DTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 474
>ref|NP_647595.1| myc box-dependent-interacting protein 1 isoform 3 [Homo sapiens].
Length = 506
Score = 500 bits (1287), Expect = e-141
Identities = 272/389 (69%), Positives = 274/389 (70%), Gaps = 37/389 (9%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177
Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237
Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
YVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNKSP 297
Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQPTESPAGSLPSGEPSAAEGTFA 627
AATPEIRVNH KSPSQPTESPAGSLPSGEPSAAEGTFA
Sbjct: 298 SPPDGSP-AATPEIRVNHEPEPAGGATPGATLPKSPSQPTESPAGSLPSGEPSAAEGTFA 356
Query: 628 VAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TFSATVN 789
V+WPSQTAEPGPAQPAEAS TF ATVN
Sbjct: 357 VSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVN 416
Query: 790 GTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWL 969
GTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWL
Sbjct: 417 GTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWL 476
Query: 970 MGVKESDWNQHKELEKCRGVFPENFTERV 1056
MGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 477 MGVKESDWNQHKELEKCRGVFPENFTERV 505
>ref|NP_647597.1| myc box-dependent-interacting protein 1 isoform 5 [Homo sapiens].
Length = 518
Score = 495 bits (1275), Expect = e-140
Identities = 272/401 (67%), Positives = 274/401 (68%), Gaps = 49/401 (12%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
LEKQHGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH
Sbjct: 238 GLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGAT 296
Query: 541 XXKS-------------------------------------------PSQPTESPAGSLP 591
KS PSQPTESPAGSLP
Sbjct: 297 LPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPTESPAGSLP 356
Query: 592 SGEPSAAEGTFAVAWPSQTAEPGPAQPAEAS------XXXXXXXXXXXXXXXXXXXXXXX 753
SGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS
Sbjct: 357 SGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLP 416
Query: 754 XXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIP 933
TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIP
Sbjct: 417 AVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIP 476
Query: 934 FQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
FQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 477 FQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 517
>ref|NP_647594.1| myc box-dependent-interacting protein 1 isoform 2 [Homo sapiens].
Length = 550
Score = 479 bits (1232), Expect = e-135
Identities = 272/433 (62%), Positives = 274/433 (63%), Gaps = 81/433 (18%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177
Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237
Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
YVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNKSP 297
Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ---------------------- 561
AATPEIRVNH KSPSQ
Sbjct: 298 SPPDGSP-AATPEIRVNHEPEPAGGATPGATLPKSPSQFEAPGPFSEQASLLDLDFDPLP 356
Query: 562 ----------------------PTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPA 675
PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPA
Sbjct: 357 PVTSPVKAPTPSGQSIPWDLWEPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPA 416
Query: 676 EASXXXXXXXXXXXXXXXXXXXXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPP 837
EAS TF ATVNGTVE GS AGRLDLPP
Sbjct: 417 EASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPP 476
Query: 838 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 1017
GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK
Sbjct: 477 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEK 536
Query: 1018 CRGVFPENFTERV 1056
CRGVFPENFTERV
Sbjct: 537 CRGVFPENFTERV 549
>ref|NP_647598.1| myc box-dependent-interacting protein 1 isoform 6 [Homo sapiens].
Length = 482
Score = 444 bits (1141), Expect = e-125
Identities = 251/371 (67%), Positives = 254/371 (68%), Gaps = 19/371 (5%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
LEKQHGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH
Sbjct: 238 GLEKQHGSNTFTVKAQPSDNAPAKGNKSPSPPDGSP-AATPEIRVNHEPEPAGGATPGAT 296
Query: 541 XXKSPSQ-----PTESPAGSLPSGEP------SAAEGTF----AVAWPSQTAEP----GP 663
KSPSQ P P PS E S E TF +V PSQ AE G
Sbjct: 297 LPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAGG 356
Query: 664 AQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGF 843
QPA + TF ATVNGTVE GS AGRLDLPPGF
Sbjct: 357 TQPAAGAQEPGETAASEAASSSLPAVVVE------TFPATVNGTVEGGSGAGRLDLPPGF 410
Query: 844 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR 1023
MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR
Sbjct: 411 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCR 470
Query: 1024 GVFPENFTERV 1056
GVFPENFTERV
Sbjct: 471 GVFPENFTERV 481
>ref|NP_647600.1| myc box-dependent-interacting protein 1 isoform 9 [Homo sapiens].
Length = 439
Score = 443 bits (1140), Expect = e-124
Identities = 241/352 (68%), Positives = 247/352 (70%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
LEKQHGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH
Sbjct: 238 GLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGAT 296
Query: 541 XXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXX 720
KSPSQP E+ A GT A + E ++ A +S
Sbjct: 297 LPKSPSQPAEA---------SEVAGGTQPAAGAQEPGETAASEAASSS------------ 335
Query: 721 XXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQ
Sbjct: 336 ---------LPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 386
Query: 901 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 387 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 438
>ref|NP_647596.1| myc box-dependent-interacting protein 1 isoform 4 [Homo sapiens].
Length = 497
Score = 434 bits (1115), Expect = e-121
Identities = 251/386 (65%), Positives = 254/386 (65%), Gaps = 34/386 (8%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRV 495
LEKQHGSNTFTVKAQP SDNAPAKGNK AATPEIRV
Sbjct: 238 GLEKQHGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSP-AATPEIRV 296
Query: 496 NHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP------SAAEGTF----AV 630
NH KSPSQ P P PS E S E TF +V
Sbjct: 297 NHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISV 356
Query: 631 AWPSQTAEP----GPAQPAEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTV 798
PSQ AE G QPA + TF ATVNGTV
Sbjct: 357 TTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVE------TFPATVNGTV 410
Query: 799 ESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 978
E GS AGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV
Sbjct: 411 EGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 470
Query: 979 KESDWNQHKELEKCRGVFPENFTERV 1056
KESDWNQHKELEKCRGVFPENFTERV
Sbjct: 471 KESDWNQHKELEKCRGVFPENFTERV 496
>ref|NP_004296.1| myc box-dependent-interacting protein 1 isoform 8 [Homo sapiens].
Length = 454
Score = 433 bits (1114), Expect = e-121
Identities = 241/367 (65%), Positives = 247/367 (67%), Gaps = 15/367 (4%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQP---------------SDNAPAKGNKXXXXXXXXXXAATPEIRV 495
LEKQHGSNTFTVKAQP SDNAPAKGNK AATPEIRV
Sbjct: 238 GLEKQHGSNTFTVKAQPRKKSKLFSRLRRKKNSDNAPAKGNKSPSPPDGSP-AATPEIRV 296
Query: 496 NHXXXXXXXXXXXXXXXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPA 675
NH KSPSQP E+ A GT A + E ++ A
Sbjct: 297 NHEPEPAGGATPGATLPKSPSQPAEAS---------EVAGGTQPAAGAQEPGETAASEAA 347
Query: 676 EASXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKV 855
+S TF ATVNGTVE GS AGRLDLPPGFMFKV
Sbjct: 348 SSSLPAVVVE---------------------TFPATVNGTVEGGSGAGRLDLPPGFMFKV 386
Query: 856 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 1035
QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP
Sbjct: 387 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 446
Query: 1036 ENFTERV 1056
ENFTERV
Sbjct: 447 ENFTERV 453
>ref|NP_647601.1| myc box-dependent-interacting protein 1 isoform 10 [Homo sapiens].
Length = 409
Score = 411 bits (1056), Expect = e-115
Identities = 230/352 (65%), Positives = 234/352 (66%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEE 177
Query: 181 XXXXXXVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 360
VFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV
Sbjct: 178 LIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 237
Query: 361 SLEKQHGSNTFTVKAQPSDNAPAKGNKXXXXXXXXXXAATPEIRVNHXXXXXXXXXXXXX 540
LEKQHGSNTFTVKAQPSDNAPAKGNK AATPEIRVNH
Sbjct: 238 GLEKQHGSNTFTVKAQPSDNAPAKGNK-SPSPPDGSPAATPEIRVNHEPEPAGGATPGAT 296
Query: 541 XXKSPSQPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXX 720
KSPSQ + P+ E PA
Sbjct: 297 LPKSPSQS----------------------SLPAVVVETFPA------------------ 316
Query: 721 XXXXXXXXXXXXXXXXTFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
T + TV G GS AGRLDLPPGFMFKVQAQHDYTATDTDELQ
Sbjct: 317 ----------------TVNGTVEG----GSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 356
Query: 901 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 357 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 408
>ref|NP_647593.1| myc box-dependent-interacting protein 1 isoform 1 [Homo sapiens].
Length = 593
Score = 261 bits (668), Expect = 7e-70
Identities = 133/172 (77%), Positives = 135/172 (78%), Gaps = 6/172 (3%)
Frame = +1
Query: 559 QPTESPAGSLPSGEPSAAEGTFAVAWPSQTAEPGPAQPAEASXXXXXXXXXXXXXXXXXX 738
+PTESPAGSLPSGEPSAAEGTFAV+WPSQTAEPGPAQPAEAS
Sbjct: 421 EPTESPAGSLPSGEPSAAEGTFAVSWPSQTAEPGPAQPAEASEVAGGTQPAAGAQEPGET 480
Query: 739 XXXXXXXXXX------TFSATVNGTVESGSAAGRLDLPPGFMFKVQAQHDYTATDTDELQ 900
TF ATVNGTVE GS AGRLDLPPGFMFKVQAQHDYTATDTDELQ
Sbjct: 481 AASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQ 540
Query: 901 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 1056
LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV
Sbjct: 541 LKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 592
Score = 252 bits (643), Expect = 5e-67
Identities = 155/267 (58%), Positives = 157/267 (58%), Gaps = 46/267 (17%)
Frame = +1
Query: 1 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHFESLQTXXXXXXXXXXXXXXX 180
LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHH+ESLQT
Sbjct: 118 LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKPVSL 177
Query: 181 XXXXXX-------------------------------VFEEMNVDLQEELPSLWNSRVGF 267
VFEEMNVDLQEELPSLWNSRVGF
Sbjct: 178 LEKAAPQWCQGKLQAHLVAQTNLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGF 237
Query: 268 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVSLEKQHGSNTFTVKAQPSDNAPAKGNKXX 447
YVNTFQSIAGLEENFHKEMSKLNQNLNDVLV LEKQHGSNTFTVKAQPSDNAPAKGNK
Sbjct: 238 YVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLEKQHGSNTFTVKAQPSDNAPAKGNK-S 296
Query: 448 XXXXXXXXAATPEIRVNHXXXXXXXXXXXXXXXKSPSQ-----PTESPAGSLPSGEP--- 603
AATPEIRVNH KSPSQ P P PS E
Sbjct: 297 PSPPDGSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQE 356
Query: 604 ---SAAEGTF----AVAWPSQTAEPGP 663
S E TF +V PSQ PGP
Sbjct: 357 QILSLFEDTFVPEISVTTPSQFEAPGP 383
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.314 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,323,654
Number of extensions: 1404342
Number of successful extensions: 6991
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6916
Number of HSP's successfully gapped: 23
Length of query: 385
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 281
Effective length of database: 14,868,908
Effective search space: 4178163148
Effective search space used: 4178163148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007966
(1155 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 299 2e-78
>Sscrofa_Chr15
|| Length = 157681621
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 411 cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050203 cagtgacaacgcccctgcaaaagggaacaagagcccctcgcctccgcctgatggctctcc 29050262
Query: 471 tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29050263 tgctgccactcccgagatcagagtcaaccacgagcctgagccagccggggcagccacacc 29050322
Query: 531 tggggcagccctccccaagtccccgtcccag 561
|||||||||||||||||||||||||||||||
Sbjct: 29050323 tggggcagccctccccaagtccccgtcccag 29050353
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 742 agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtggag 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056770 agttctctcccggcggtggtggtggagaccttctcagcaactgtgaacggcaccgtggag 29056829
Query: 802 agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056830 agcggcagcgcggcagggcgcctggacctgcctccagggttcatgttcaaggtg 29056883
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 59 agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040680 agtcacgcattgccaagcgtgggcggaagctggtggactatgacagtgcccggcaccatt 29040739
Query: 119 ttgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 169
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29040740 ttgagtccctccaaactgccaaaaagaaggatgaagccaaaatagctaagg 29040790
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 560 agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055643 agcccacagagagtccagctggcagcctgccttccggggagcccagcgctgccgagggca 29055702
Query: 620 cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29055703 cctttgctgtggcctggcccagccagacggccgagccagggcctgcccaa 29055752
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 167 aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045538 aggccgaggaagagctcatcaaagcccagaaggtgtttgaggagatgaacgtggacctgc 29045597
Query: 227 aggaggagctgccgtccctgtggaacag 254
||||||||||||||||||||||||||||
Sbjct: 29045598 aggaggagctgccgtccctgtggaacag 29045625
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 329 agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29047353 agctcaaccagaatctcaatgacgtgctggtcagcctggagaagcagcacgggagcaaca 29047412
Query: 389 ccttcacggtcaaggcccagcccag 413
|||||||||||||||||||||||||
Sbjct: 29047413 ccttcacggtcaaggcccagcccag 29047437
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 851 aggtgcaggcccagcacgactacacggccactgacacagacgagctgcaactcaaggctg 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29057103 aggtgcaggcccagcacgactacacggccactgacacagacgagctgcaactcaaggctg 29057162
Query: 911 gagacgtggtgctggtgatcccc 933
|||||||||||||||||||||||
Sbjct: 29057163 gagacgtggtgctggtgatcccc 29057185
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 251 acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29045770 acagccgggtgggtttctatgtcaacactttccagagcatcgcgggcttggaggagaact 29045829
Query: 311 tccacaaggaaatgagtaag 330
||||||||||||||||||||
Sbjct: 29045830 tccacaaggaaatgagtaag 29045849
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 670 ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29056486 ccagcagaggcgtcggaggtggcgggtggagcccaggagcctggggagccggcagcaagt 29056545
Query: 730 gaagcagcctcc 741
||||||||||||
Sbjct: 29056546 gaagcagcctcc 29056557
Score = 119 bits (60), Expect = 4e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ctggtggaccaggcgctgctgaccatggacacgtacctgggccagttcccggacatcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29039676 ctggtggaccaggcgctgctgaccatggacacgtacctgggccagttcccggacatcaag 29039735
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,278,213
Number of extensions: 281
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 10
Length of query: 1155
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1134
Effective length of database: 2,808,413,156
Effective search space: 3184740518904
Effective search space used: 3184740518904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)