Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007972
(1040 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015608.1| chloride intracellular channel protein 1 [Bo... 480 e-136
Alignment gi|NP_001073687.1| chloride intracellular channel protein 4 [Bo... 334 7e-92
Alignment gi|XP_002684631.1| PREDICTED: chloride intracellular channel 6-... 310 1e-84
Alignment gi|XP_583818.3| PREDICTED: chloride intracellular channel 6-lik... 310 1e-84
Alignment gi|NP_776701.1| chloride intracellular channel protein 5 [Bos t... 306 2e-83
Alignment gi|NP_001075196.1| chloride intracellular channel protein 2 [Bo... 294 1e-79
Alignment gi|NP_001093771.1| chloride intracellular channel protein 3 [Bo... 225 6e-59
>ref|NP_001015608.1| chloride intracellular channel protein 1 [Bos taurus].
Length = 241
Score = 480 bits (1236), Expect = e-136
Identities = 236/239 (98%), Positives = 238/239 (99%)
Frame = +1
Query: 220 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 399
MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP
Sbjct: 1 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 60
Query: 400 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 579
GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN
Sbjct: 61 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 120
Query: 580 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 759
SNPALNDNLEKGLLKALKVLDNYLTSPLP+EVDETSAEDEGISQRKFLDGNELTLADCNL
Sbjct: 121 SNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNL 180
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
LPKLHIVQVVCKKYRGFSIPD FRGVHRYLRNAYAREEFASTCPDDEEIELAY+QVAKA
Sbjct: 181 LPKLHIVQVVCKKYRGFSIPDVFRGVHRYLRNAYAREEFASTCPDDEEIELAYEQVAKA 239
>ref|NP_001073687.1| chloride intracellular channel protein 4 [Bos taurus].
Length = 253
Score = 334 bits (857), Expect = 7e-92
Identities = 159/236 (67%), Positives = 187/236 (79%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+++P +ELFVKAGSDG IGNCPFSQRLFM+LWLKGV F+VTTVD KR+ +Q L PG
Sbjct: 14 DKEPIIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGT 73
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PF+ + EV TD NKIEEFLE VLCPP+Y KL+ +PESNTAG+DIFAKFSAYIKNS
Sbjct: 74 HPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSR 133
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLP 765
P N+ LE+GLLK L+ LD YL SPLP+E+DE S ED S RKFLDGNE+TLADCNLLP
Sbjct: 134 PEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLP 193
Query: 766 KLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
KLHIV+VV KKYR F IP G+ RYL NAY+R+EF +TCP D+E+E+AY VAK
Sbjct: 194 KLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAK 249
>ref|XP_002684631.1| PREDICTED: chloride intracellular channel 6-like [Bos taurus].
Length = 655
Score = 310 bits (794), Expect = 1e-84
Identities = 150/231 (64%), Positives = 175/231 (75%)
Frame = +1
Query: 241 VELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFL 420
+ LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ +Q L PG PF+
Sbjct: 422 ITLFVKAGCDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFM 481
Query: 421 LYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALND 600
+ EV TD NKIEEFLE L PPRYPKL +PESN+AG D+FAKFSA+IKN+ N+
Sbjct: 482 TFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANE 541
Query: 601 NLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIV 780
E+ LLKALK LD+YL SPLP+E+D S E+ IS RKFLDGNELTLADCNLLPKLHI+
Sbjct: 542 IYERNLLKALKKLDSYLNSPLPDEIDAYSTEEAAISGRKFLDGNELTLADCNLLPKLHII 601
Query: 781 QVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
++V K+YR F P G+ RYL NAYAR+EF +TCP D+EIE AY VAK
Sbjct: 602 KIVAKRYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADQEIEHAYSDVAK 652
>ref|XP_583818.3| PREDICTED: chloride intracellular channel 6-like [Bos taurus].
Length = 655
Score = 310 bits (794), Expect = 1e-84
Identities = 150/231 (64%), Positives = 175/231 (75%)
Frame = +1
Query: 241 VELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFL 420
+ LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ +Q L PG PF+
Sbjct: 422 ITLFVKAGCDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFM 481
Query: 421 LYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALND 600
+ EV TD NKIEEFLE L PPRYPKL +PESN+AG D+FAKFSA+IKN+ N+
Sbjct: 482 TFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANE 541
Query: 601 NLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIV 780
E+ LLKALK LD+YL SPLP+E+D S E+ IS RKFLDGNELTLADCNLLPKLHI+
Sbjct: 542 IYERNLLKALKKLDSYLNSPLPDEIDAYSTEEAAISGRKFLDGNELTLADCNLLPKLHII 601
Query: 781 QVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
++V K+YR F P G+ RYL NAYAR+EF +TCP D+EIE AY VAK
Sbjct: 602 KIVAKRYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADQEIEHAYSDVAK 652
>ref|NP_776701.1| chloride intracellular channel protein 5 [Bos taurus].
Length = 437
Score = 306 bits (784), Expect = 2e-83
Identities = 151/238 (63%), Positives = 179/238 (75%), Gaps = 1/238 (0%)
Frame = +1
Query: 223 AEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPG 402
A P++ LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ + L PG
Sbjct: 195 ASASPEINLFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPG 254
Query: 403 GQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNS 582
PFL + +V TD NKIEEFLE L P +YP+LAA + ESNTAG+DIF KFSAYIKN+
Sbjct: 255 THPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKHRESNTAGIDIFVKFSAYIKNT 314
Query: 583 NPALNDNLEKGLLKALKVLDNYLTSPLPEEVD-ETSAEDEGISQRKFLDGNELTLADCNL 759
N LE+GL KALK LD+YL +PLPEE+D +T +DE S+RKFLDG+ELTLADCNL
Sbjct: 315 KQQSNAALERGLTKALKKLDDYLNTPLPEEIDADTRGDDEKGSRRKFLDGDELTLADCNL 374
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
LPKLH+V++V KKYR + P G+ RYL+NAYAR+EF +TC D EIELAY VAK
Sbjct: 375 LPKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYADVAK 432
>ref|NP_001075196.1| chloride intracellular channel protein 2 [Bos taurus].
Length = 247
Score = 294 bits (752), Expect = 1e-79
Identities = 145/237 (61%), Positives = 173/237 (72%)
Frame = +1
Query: 223 AEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPG 402
+E P++ELFVKAGSDG IGNCPFSQRLFM+LWLKGV FNVTTVD R+ + ++ L PG
Sbjct: 8 SEADPEIELFVKAGSDGESIGNCPFSQRLFMILWLKGVKFNVTTVDMTRKPKELKDLAPG 67
Query: 403 GQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNS 582
PFL+Y E+ TD KIEEFLE L PPRYP L+ N ES G ++FAKFSAYIKN+
Sbjct: 68 TNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPRNKESFDVGCNLFAKFSAYIKNT 127
Query: 583 NPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLL 762
N EK LLK K LD+YL +PL +E+D S E+ +S+R FLDG++LTLADC+LL
Sbjct: 128 QKEANKTFEKSLLKEFKRLDDYLNTPLLDEIDPDSTEELTVSRRLFLDGDQLTLADCSLL 187
Query: 763 PKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
PKLHI++V KKYR F IP F GV RYL NAYAREEF TCP+D+EIE Y VAK
Sbjct: 188 PKLHIIKVAAKKYRDFDIPVEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYASVAK 244
>ref|NP_001093771.1| chloride intracellular channel protein 3 [Bos taurus].
Length = 237
Score = 225 bits (573), Expect = 6e-59
Identities = 120/235 (51%), Positives = 151/235 (64%)
Frame = +1
Query: 229 EQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQ 408
E +++LFVKA DG +G+CP QRLFM+L LKGV F +TTVDT+R E ++ PG Q
Sbjct: 3 EAGKLQLFVKASEDGESVGHCPSCQRLFMILLLKGVPFTLTTVDTRRSPEVLKDFAPGSQ 62
Query: 409 LPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNP 588
LP LL + TDT +IEEFLE L PP +P LA ES AG D+F KFSA+IKN P
Sbjct: 63 LPILLCDGDAKTDTLQIEEFLEETLGPPEFPSLAPRYRESTAAGNDVFHKFSAFIKNPVP 122
Query: 589 ALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPK 768
A +D L + LL+AL LD+YL +PL E+ E S+R+FLDG++LTLADC LLPK
Sbjct: 123 AQDDALYQQLLRALAKLDSYLRAPLEHELGREPQLRE--SRRRFLDGDQLTLADCGLLPK 180
Query: 769 LHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
LH+V VC +R IP RG+ RYL A +EF TCP EI AY+ V +
Sbjct: 181 LHVVNTVCAHFRQAPIPAELRGLRRYLDCALQEKEFKYTCPHSAEILAAYRPVVR 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,881,486
Number of extensions: 1287214
Number of successful extensions: 5104
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5074
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007972
(1040 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532079.1| PREDICTED: similar to Chloride intracellular ch... 480 e-135
Alignment gi|XP_532182.2| PREDICTED: similar to Chloride intracellular ch... 454 e-128
Alignment gi|XP_853690.1| PREDICTED: similar to Chloride intracellular ch... 444 e-125
Alignment gi|XP_544493.2| PREDICTED: similar to Chloride intracellular ch... 335 5e-92
Alignment gi|XP_544870.2| PREDICTED: similar to chloride intracellular ch... 304 8e-83
Alignment gi|XP_866055.1| PREDICTED: similar to chloride intracellular ch... 303 2e-82
Alignment gi|XP_538943.2| PREDICTED: similar to Chloride intracellular ch... 300 1e-81
Alignment gi|NP_001182083.1| chloride intracellular channel protein 2 [Ca... 292 4e-79
Alignment gi|XP_866597.1| PREDICTED: similar to Chloride intracellular ch... 282 3e-76
Alignment gi|XP_867783.1| PREDICTED: similar to Chloride intracellular ch... 269 4e-72
>ref|XP_532079.1| PREDICTED: similar to Chloride intracellular channel protein 1
(Nuclear chloride ion channel 27) (NCC27) (p64 CLCP)
(Chloride channel ABP) (Regulatory nuclear chloride ion
channel protein) (hRNCC) [Canis familiaris].
Length = 241
Score = 480 bits (1235), Expect = e-135
Identities = 236/239 (98%), Positives = 238/239 (99%)
Frame = +1
Query: 220 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 399
MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP
Sbjct: 1 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 60
Query: 400 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 579
GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN
Sbjct: 61 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 120
Query: 580 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 759
SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL
Sbjct: 121 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 180
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
LPKLHIVQVVCKKYRGFSIP+ FRGVHRYLRNAYAREEFASTCPDDEEIELAY+QVAKA
Sbjct: 181 LPKLHIVQVVCKKYRGFSIPEVFRGVHRYLRNAYAREEFASTCPDDEEIELAYEQVAKA 239
>ref|XP_532182.2| PREDICTED: similar to Chloride intracellular channel protein 1
(Nuclear chloride ion channel 27) (NCC27) (p64 CLCP)
(Chloride channel ABP) (Regulatory nuclear chloride ion
channel protein) (hRNCC) isoform 1 [Canis familiaris].
Length = 241
Score = 454 bits (1169), Expect = e-128
Identities = 225/239 (94%), Positives = 228/239 (95%)
Frame = +1
Query: 220 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 399
MAEE PQVELFV AGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP
Sbjct: 1 MAEEPPQVELFVTAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 60
Query: 400 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 579
GGQLPFL Y TEVHTDTN IEE LEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN
Sbjct: 61 GGQLPFLPYRTEVHTDTNNIEEVLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 120
Query: 580 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 759
SNPAL DNLEKGLLK LKVLDNYLTSPLPEE DETSAE+EGISQRKFLDGNELTLADCNL
Sbjct: 121 SNPALKDNLEKGLLKVLKVLDNYLTSPLPEEGDETSAENEGISQRKFLDGNELTLADCNL 180
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
LPKLHIVQVVCKKYRGFSIP+ FRGVHRYL NAYAREEFASTCPDDEEIELAY+QVAKA
Sbjct: 181 LPKLHIVQVVCKKYRGFSIPEVFRGVHRYLHNAYAREEFASTCPDDEEIELAYEQVAKA 239
>ref|XP_853690.1| PREDICTED: similar to Chloride intracellular channel protein 1
(Nuclear chloride ion channel 27) (NCC27) (p64 CLCP)
(Chloride channel ABP) (Regulatory nuclear chloride ion
channel protein) (hRNCC) isoform 1 [Canis familiaris].
Length = 240
Score = 444 bits (1143), Expect = e-125
Identities = 223/239 (93%), Positives = 228/239 (95%)
Frame = +1
Query: 220 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 399
MAEEQP+VELF+KAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQ LCP
Sbjct: 1 MAEEQPRVELFLKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQTLCP 60
Query: 400 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 579
GGQLPFL Y TEVHTDT KIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN
Sbjct: 61 GGQLPFLRYRTEVHTDT-KIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 119
Query: 580 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 759
NPALNDNLEKGL KAL+VLDNYLTSPLPEEVDET AEDEGISQRKFLDGNELTLADCNL
Sbjct: 120 PNPALNDNLEKGLPKALRVLDNYLTSPLPEEVDETRAEDEGISQRKFLDGNELTLADCNL 179
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
LPKLHIVQVVCKK RGFSIP+ FRGVHRYLRNA AREEFASTCPDDEEIELA +QVAKA
Sbjct: 180 LPKLHIVQVVCKKSRGFSIPEVFRGVHRYLRNACAREEFASTCPDDEEIELACEQVAKA 238
>ref|XP_544493.2| PREDICTED: similar to Chloride intracellular channel protein 4
(mc3s5/mtCLIC) [Canis familiaris].
Length = 253
Score = 335 bits (858), Expect = 5e-92
Identities = 159/236 (67%), Positives = 187/236 (79%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+++P +ELFVKAGSDG IGNCPFSQRLFM+LWLKGV F+VTTVD KR+ +Q L PG
Sbjct: 14 DKEPVIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGT 73
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PF+ + EV TD NKIEEFLE VLCPP+Y KL+ +PESNTAG+DIFAKFSAYIKNS
Sbjct: 74 HPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSR 133
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLP 765
P N+ LE+GLLK L+ LD YL SPLP+E+DE S ED S RKFLDGNE+TLADCNLLP
Sbjct: 134 PEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLP 193
Query: 766 KLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
KLHIV+VV KKYR F IP G+ RYL NAY+R+EF +TCP D+E+E+AY VAK
Sbjct: 194 KLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAK 249
>ref|XP_544870.2| PREDICTED: similar to chloride intracellular channel 6 [Canis
familiaris].
Length = 251
Score = 304 bits (779), Expect = 8e-83
Identities = 148/228 (64%), Positives = 172/228 (75%)
Frame = +1
Query: 250 FVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYG 429
F+ AG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ +Q L PG PF+ +
Sbjct: 21 FLGAGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFD 80
Query: 430 TEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLE 609
EV TD NKIEEFLE L PPRYPKL +PESN+AG D+FAKFSA+IKN+ N+ E
Sbjct: 81 GEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYE 140
Query: 610 KGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVV 789
K LLKALK LDNYL SPLP+E+D S ED +S RKFLDG+ELTLADCNLLPKLHI+++V
Sbjct: 141 KNLLKALKKLDNYLNSPLPDEIDAYSTEDITVSGRKFLDGDELTLADCNLLPKLHIIKIV 200
Query: 790 CKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
K+YR F P G+ RYL NAYAR+EF +TCP D+EIE AY VAK
Sbjct: 201 AKRYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADQEIEHAYSDVAK 248
>ref|XP_866055.1| PREDICTED: similar to chloride intracellular channel 5 isoform 2
[Canis familiaris].
Length = 252
Score = 303 bits (775), Expect = 2e-82
Identities = 148/237 (62%), Positives = 180/237 (75%), Gaps = 1/237 (0%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+ P++ELFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ + L PG
Sbjct: 11 DRDPEIELFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGT 70
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PFL + +V TD NKIEEFLE L P +YPKLAA + ESNTAG+DIF+KFSAYIKN+
Sbjct: 71 HPPFLTFNGDVKTDVNKIEEFLEEALAPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNTK 130
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVD-ETSAEDEGISQRKFLDGNELTLADCNLL 762
N LE+GL +ALK LD+YL +PLPEE+D T +++ S+RKFLDG+ELTLADCNLL
Sbjct: 131 QQNNAALERGLTRALKKLDDYLNNPLPEEIDANTHGDEDKRSRRKFLDGDELTLADCNLL 190
Query: 763 PKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
PKLH+V++V KKYR + P G+ RYL+NAYAR+EF +TC D+EIE AY VAK
Sbjct: 191 PKLHVVKIVSKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCAADKEIESAYADVAK 247
>ref|XP_538943.2| PREDICTED: similar to Chloride intracellular channel protein 5
isoform 1 [Canis familiaris].
Length = 406
Score = 300 bits (768), Expect = 1e-81
Identities = 147/234 (62%), Positives = 178/234 (76%), Gaps = 1/234 (0%)
Frame = +1
Query: 235 PQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLP 414
P++ LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ + L PG P
Sbjct: 168 PEISLFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPP 227
Query: 415 FLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPAL 594
FL + +V TD NKIEEFLE L P +YPKLAA + ESNTAG+DIF+KFSAYIKN+
Sbjct: 228 FLTFNGDVKTDVNKIEEFLEEALAPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNTKQQN 287
Query: 595 NDNLEKGLLKALKVLDNYLTSPLPEEVD-ETSAEDEGISQRKFLDGNELTLADCNLLPKL 771
N LE+GL +ALK LD+YL +PLPEE+D T +++ S+RKFLDG+ELTLADCNLLPKL
Sbjct: 288 NAALERGLTRALKKLDDYLNNPLPEEIDANTHGDEDKRSRRKFLDGDELTLADCNLLPKL 347
Query: 772 HIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
H+V++V KKYR + P G+ RYL+NAYAR+EF +TC D+EIE AY VAK
Sbjct: 348 HVVKIVSKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCAADKEIESAYADVAK 401
>ref|NP_001182083.1| chloride intracellular channel protein 2 [Canis lupus familiaris].
Length = 239
Score = 292 bits (747), Expect = 4e-79
Identities = 144/233 (61%), Positives = 172/233 (73%)
Frame = +1
Query: 235 PQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLP 414
P++ELFVKAGSDG IGNCPF QRLFM+LWLKGV FNVTTVD R+ E ++ L PG P
Sbjct: 4 PEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPP 63
Query: 415 FLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPAL 594
FL+Y E+ TD KIEEFLE L PPRYP L+ N ES G ++FAKFSAYIKN+
Sbjct: 64 FLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKNKESFDVGCNLFAKFSAYIKNTQKEA 123
Query: 595 NDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLH 774
N N EK LL+ K LD+YL +PL +E+D SAE+ +S+R FLDG++LTLADC+LLPKL+
Sbjct: 124 NKNFEKSLLREFKRLDDYLNTPLLDEIDPDSAEELTVSRRLFLDGDQLTLADCSLLPKLN 183
Query: 775 IVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
I++V KKYR F IP F GV RYL NAYAREEF TCP+D+EIE Y VAK
Sbjct: 184 IIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYASVAK 236
>ref|XP_866597.1| PREDICTED: similar to Chloride intracellular channel protein 1
(Nuclear chloride ion channel 27) (NCC27) (p64 CLCP)
(Chloride channel ABP) (Regulatory nuclear chloride ion
channel protein) (hRNCC) isoform 2 [Canis familiaris].
Length = 159
Score = 282 bits (722), Expect = 3e-76
Identities = 141/153 (92%), Positives = 145/153 (94%), Gaps = 3/153 (1%)
Frame = +1
Query: 487 PPR---YPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTS 657
PP+ YPKLAALNPESNTAGLDIFAKFSAYIKNSNPAL DNLEKGLLK LKVLDNYLTS
Sbjct: 5 PPQVELYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALKDNLEKGLLKVLKVLDNYLTS 64
Query: 658 PLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDAFRGV 837
PLPEE DETSAE+EGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIP+ FRGV
Sbjct: 65 PLPEEGDETSAENEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPEVFRGV 124
Query: 838 HRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
HRYL NAYAREEFASTCPDDEEIELAY+QVAKA
Sbjct: 125 HRYLHNAYAREEFASTCPDDEEIELAYEQVAKA 157
>ref|XP_867783.1| PREDICTED: similar to Chloride intracellular channel protein 1
(Nuclear chloride ion channel 27) (NCC27) (p64 CLCP)
(Chloride channel ABP) (Regulatory nuclear chloride ion
channel protein) (hRNCC) isoform 2 [Canis familiaris].
Length = 159
Score = 269 bits (687), Expect = 4e-72
Identities = 135/145 (93%), Positives = 138/145 (95%)
Frame = +1
Query: 502 KLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDE 681
KLAALNPESNTAGLDIFAKFSAYIKN NPALNDNLEKGL KAL+VLDNYLTSPLPEEVDE
Sbjct: 13 KLAALNPESNTAGLDIFAKFSAYIKNPNPALNDNLEKGLPKALRVLDNYLTSPLPEEVDE 72
Query: 682 TSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAY 861
T AEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKK RGFSIP+ FRGVHRYLRNA
Sbjct: 73 TRAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKSRGFSIPEVFRGVHRYLRNAC 132
Query: 862 AREEFASTCPDDEEIELAYQQVAKA 936
AREEFASTCPDDEEIELA +QVAKA
Sbjct: 133 AREEFASTCPDDEEIELACEQVAKA 157
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,675,769
Number of extensions: 1323023
Number of successful extensions: 5411
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5322
Number of HSP's successfully gapped: 11
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007972
(1040 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128024.1| PREDICTED: LOW QUALITY PROTEIN: chloride int... 387 e-108
Alignment gi|XP_003358996.1| PREDICTED: chloride intracellular channel pr... 309 1e-84
Alignment gi|NP_001185852.1| chloride intracellular channel protein 5 [Su... 308 2e-84
Alignment gi|XP_003135561.1| PREDICTED: chloride intracellular channel pr... 290 7e-79
Alignment gi|XP_003356255.1| PREDICTED: chloride intracellular channel pr... 158 4e-39
>ref|XP_003128024.1| PREDICTED: LOW QUALITY PROTEIN: chloride intracellular channel
protein 1 [Sus scrofa].
Length = 238
Score = 387 bits (994), Expect = e-108
Identities = 199/239 (83%), Positives = 211/239 (88%)
Frame = +1
Query: 220 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 399
M E+Q QVELFVKAGSDGAKIG C SQRLFMVLW+KGVTFNV TVDTKR TETVQKL P
Sbjct: 1 MPEKQLQVELFVKAGSDGAKIGTCSISQRLFMVLWIKGVTFNVITVDTKRWTETVQKLSP 60
Query: 400 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 579
GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFA+FSAYIKN
Sbjct: 61 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAQFSAYIKN 120
Query: 580 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 759
S+P LNDNLEKG+ KALKVLDNYLTSPLPEEVDETSAED+GISQRKF +GNELTLA+CNL
Sbjct: 121 SHPDLNDNLEKGVQKALKVLDNYLTSPLPEEVDETSAEDKGISQRKFXNGNELTLANCNL 180
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
LPKLHI Q+VCKKY GFSIP F +H AY E FAST DDEEI+LAY+ VAKA
Sbjct: 181 LPKLHIGQLVCKKYWGFSIPGGFCRMH---LKAYTWEVFASTYLDDEEIKLAYEXVAKA 236
>ref|XP_003358996.1| PREDICTED: chloride intracellular channel protein 6 [Sus scrofa].
Length = 640
Score = 309 bits (792), Expect = 1e-84
Identities = 149/235 (63%), Positives = 177/235 (75%)
Frame = +1
Query: 229 EQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQ 408
++ + LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ +Q L PG
Sbjct: 403 QEHDITLFVKAGCDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTN 462
Query: 409 LPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNP 588
PF+ + EV TD NKIEEFLE L PPRYPKL +PESN+AG D+FAKFSA+IKN+
Sbjct: 463 PPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKK 522
Query: 589 ALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPK 768
N+ E+ LLKALK LD YL SPLP+E+D SAE+ +S RKFLDG+ELTLADCNLLPK
Sbjct: 523 DANEIYERNLLKALKKLDTYLNSPLPDEIDAYSAEEVAVSGRKFLDGDELTLADCNLLPK 582
Query: 769 LHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
LHI+++V K+YR F P G+ RYL NAYAR+EF +TCP D+EIE AY VAK
Sbjct: 583 LHIIKIVAKRYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADQEIEHAYSDVAK 637
>ref|NP_001185852.1| chloride intracellular channel protein 5 [Sus scrofa].
Length = 252
Score = 308 bits (790), Expect = 2e-84
Identities = 150/237 (63%), Positives = 182/237 (76%), Gaps = 1/237 (0%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+ P++ELFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ + L PG
Sbjct: 11 DRDPEIELFVKAGIDGESIGNCPFSQRLFMILWLKGVMFNVTTVDLKRKPADLHNLAPGT 70
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PFL + +V TD NKIEEFLE L P +YP+LAA + ESNTAG+DIF+KFSAYIKN+
Sbjct: 71 HPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKHRESNTAGIDIFSKFSAYIKNTK 130
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEG-ISQRKFLDGNELTLADCNLL 762
N LE+GL KALK LD+YL +PLPEE+D ++ ED+ +S+RKFLDG+ELTLADCNLL
Sbjct: 131 QQSNAALERGLTKALKKLDDYLNTPLPEEIDTSTREDDDEVSRRKFLDGDELTLADCNLL 190
Query: 763 PKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
PKLH+V++V KKYR + P G+ RYL+NAYAR+EF +TC D EIELAY VAK
Sbjct: 191 PKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYADVAK 247
>ref|XP_003135561.1| PREDICTED: chloride intracellular channel protein 2-like [Sus
scrofa].
Length = 247
Score = 290 bits (743), Expect = 7e-79
Identities = 143/233 (61%), Positives = 173/233 (74%)
Frame = +1
Query: 235 PQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLP 414
P++ELFVKAGSDG IG+CPF QRLFM+LWLKGV FNVTTVD R+ E ++ L PG P
Sbjct: 12 PEIELFVKAGSDGESIGSCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPP 71
Query: 415 FLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPAL 594
FL+Y E+ TD KIEEFLE L PPRYP L+ N ES G ++FAKFSAYIKN+
Sbjct: 72 FLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKNKESFDVGCNLFAKFSAYIKNTQKES 131
Query: 595 NDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLH 774
N N EK LL+ K LD+YL +PL +E+D SAE+ +S+R FLDG++LTLADC+LLPKL+
Sbjct: 132 NKNFEKSLLREFKRLDDYLNTPLLDEIDPNSAEELTVSRRLFLDGDQLTLADCSLLPKLN 191
Query: 775 IVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
I++V KKYR F IP F GV RYL NAYAREEF+ TCP+D+EIE Y VAK
Sbjct: 192 IIKVAAKKYRDFDIPREFSGVWRYLHNAYAREEFSHTCPEDKEIENTYASVAK 244
>ref|XP_003356255.1| PREDICTED: chloride intracellular channel protein 4-like [Sus
scrofa].
Length = 187
Score = 158 bits (400), Expect = 4e-39
Identities = 74/110 (67%), Positives = 87/110 (79%)
Frame = +1
Query: 604 LEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQ 783
LE+GLLK L+ LD YL SPLP+E+DE S ED S RKFLDGNE+TLADCNLLPKLHIV+
Sbjct: 74 LERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVK 133
Query: 784 VVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
VV KKYR F IP G+ RYL NAY+R+EF +TCP D+E+E+AY VAK
Sbjct: 134 VVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAK 183
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,684,685
Number of extensions: 830184
Number of successful extensions: 3369
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3351
Number of HSP's successfully gapped: 5
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007972
(1040 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_254279.1| chloride intracellular channel protein 1 [Mus m... 474 e-134
Alignment gi|NP_038913.1| chloride intracellular channel protein 4 [Mus m... 332 3e-91
Alignment gi|NP_766209.1| chloride intracellular channel protein 5 [Mus m... 311 7e-85
Alignment gi|NP_766057.1| chloride intracellular channel protein 6 [Mus m... 310 9e-85
Alignment gi|NP_081361.1| chloride intracellular channel protein 3 [Mus m... 226 2e-59
>ref|NP_254279.1| chloride intracellular channel protein 1 [Mus musculus].
Length = 241
Score = 474 bits (1221), Expect = e-134
Identities = 232/239 (97%), Positives = 238/239 (99%)
Frame = +1
Query: 220 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 399
MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP
Sbjct: 1 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 60
Query: 400 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 579
GGQLPFLLYGTEVHTDTNKIEEFLEA+LCPPRYPKLAALNPESNT+GLDIFAKFSAYIKN
Sbjct: 61 GGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTSGLDIFAKFSAYIKN 120
Query: 580 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 759
SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL
Sbjct: 121 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 180
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
LPKLHIVQVVCKKYRGF+IP+AFRGVHRYL NAYAREEFASTCPDDEEIELAY+QVA+A
Sbjct: 181 LPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEIELAYEQVARA 239
>ref|NP_038913.1| chloride intracellular channel protein 4 [Mus musculus].
Length = 253
Score = 332 bits (851), Expect = 3e-91
Identities = 157/236 (66%), Positives = 188/236 (79%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+++P +ELFVKAGSDG IGNCPFSQRLFM+LWLKGV F+VTTVD KR+ +Q L PG
Sbjct: 14 DKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGT 73
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PF+ + +EV TD NKIEEFLE VLCPP+Y KL+ +PESNTAG+DIFAKFSAYIKNS
Sbjct: 74 HPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSR 133
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLP 765
P N+ LE+GLLK L+ LD YL SPLP+E+DE S ED S R+FLDG+E+TLADCNLLP
Sbjct: 134 PEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLP 193
Query: 766 KLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
KLHIV+VV KKYR F IP G+ RYL NAY+R+EF +TCP D+E+E+AY VAK
Sbjct: 194 KLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAK 249
>ref|NP_766209.1| chloride intracellular channel protein 5 [Mus musculus].
Length = 251
Score = 311 bits (796), Expect = 7e-85
Identities = 152/236 (64%), Positives = 180/236 (76%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+ P++ELFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ + L PG
Sbjct: 11 DRDPEIELFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGT 70
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PFL + +V TD NKIEEFLE L P +YPKLAA + ESNTAG+DIF+KFSAYIKN+
Sbjct: 71 HPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNTK 130
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLP 765
N LE+GL KAL+ LD+YL SPLPEE+D + DE SQRKFLDG+ELTLADCNLLP
Sbjct: 131 QQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLP 190
Query: 766 KLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
KLH+V++V KKYR + IP G+ RYL+NAYAR+EF +TC D EIELAY VA+
Sbjct: 191 KLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYADVAR 246
>ref|NP_766057.1| chloride intracellular channel protein 6 [Mus musculus].
Length = 596
Score = 310 bits (795), Expect = 9e-85
Identities = 150/235 (63%), Positives = 177/235 (75%)
Frame = +1
Query: 229 EQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQ 408
++ + LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ +Q L PG
Sbjct: 359 QEHDITLFVKAGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTN 418
Query: 409 LPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNP 588
PF+ + EV TD NKIEEFLE L PPRYPKL +PESN+AG D+FAKFSA+IKN+
Sbjct: 419 PPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKK 478
Query: 589 ALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPK 768
N+ EK LL+ALK LD+YL SPLP+E+D S+ED +SQRKFLDG+ELTLADCNLLPK
Sbjct: 479 DANEIYEKNLLRALKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPK 538
Query: 769 LHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
LHI+++V KKYR F P G+ RYL NAYAR+EF +TCP D EIE AY AK
Sbjct: 539 LHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADREIEHAYSDAAK 593
>ref|NP_081361.1| chloride intracellular channel protein 3 [Mus musculus].
Length = 237
Score = 226 bits (577), Expect = 2e-59
Identities = 122/231 (52%), Positives = 152/231 (65%)
Frame = +1
Query: 229 EQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQ 408
E +++LFVKA DG +G+CP QRLFMVL LKGV F +TTVDT+R + ++ PG Q
Sbjct: 3 ETTKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQ 62
Query: 409 LPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNP 588
LP LLY +V TDT +IEEFLE L PP +P LA ESNTAG DIF KFSA+IKN P
Sbjct: 63 LPILLYDGDVKTDTLQIEEFLEETLGPPDFPSLAPRYRESNTAGNDIFHKFSAFIKNPVP 122
Query: 589 ALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPK 768
++ L + LL+AL LD+YL +PL E+ + E S R+FLDG++ TLADC+LLPK
Sbjct: 123 TQDNALYQQLLRALTRLDSYLRAPLDHELAQEPHLRE--SHRRFLDGDQFTLADCSLLPK 180
Query: 769 LHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQ 921
LHIV VC +R IP V RYL +A ++EF TCP EI AYQ
Sbjct: 181 LHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKYTCPHSAEILAAYQ 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,022,948
Number of extensions: 1083640
Number of successful extensions: 4154
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4136
Number of HSP's successfully gapped: 5
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007972
(1040 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001279.2| chloride intracellular channel protein 1 [Homo ... 478 e-135
Alignment gi|NP_039234.1| chloride intracellular channel protein 4 [Homo ... 335 5e-92
Alignment gi|NP_444507.1| chloride intracellular channel protein 6 [Homo ... 311 8e-85
Alignment gi|NP_058625.2| chloride intracellular channel protein 5 isofor... 309 2e-84
Alignment gi|NP_001107558.1| chloride intracellular channel protein 5 iso... 306 2e-83
Alignment gi|NP_001280.3| chloride intracellular channel protein 2 [Homo ... 291 9e-79
Alignment gi|NP_004660.2| chloride intracellular channel protein 3 [Homo ... 228 5e-60
>ref|NP_001279.2| chloride intracellular channel protein 1 [Homo sapiens].
Length = 241
Score = 478 bits (1229), Expect = e-135
Identities = 234/239 (97%), Positives = 238/239 (99%)
Frame = +1
Query: 220 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 399
MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP
Sbjct: 1 MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCP 60
Query: 400 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 579
GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN
Sbjct: 61 GGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN 120
Query: 580 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNL 759
SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEG+SQRKFLDGNELTLADCNL
Sbjct: 121 SNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNL 180
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAKA 936
LPKLHIVQVVCKKYRGF+IP+AFRGVHRYL NAYAREEFASTCPDDEEIELAY+QVAKA
Sbjct: 181 LPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEIELAYEQVAKA 239
>ref|NP_039234.1| chloride intracellular channel protein 4 [Homo sapiens].
Length = 253
Score = 335 bits (858), Expect = 5e-92
Identities = 159/236 (67%), Positives = 188/236 (79%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+++P +ELFVKAGSDG IGNCPFSQRLFM+LWLKGV F+VTTVD KR+ +Q L PG
Sbjct: 14 DKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGT 73
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PF+ + +EV TD NKIEEFLE VLCPP+Y KL+ +PESNTAG+DIFAKFSAYIKNS
Sbjct: 74 HPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSR 133
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLP 765
P N+ LE+GLLK L+ LD YL SPLP+E+DE S ED S RKFLDGNE+TLADCNLLP
Sbjct: 134 PEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLP 193
Query: 766 KLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
KLHIV+VV KKYR F IP G+ RYL NAY+R+EF +TCP D+E+E+AY VAK
Sbjct: 194 KLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAYSDVAK 249
>ref|NP_444507.1| chloride intracellular channel protein 6 [Homo sapiens].
Length = 686
Score = 311 bits (796), Expect = 8e-85
Identities = 151/235 (64%), Positives = 177/235 (75%)
Frame = +1
Query: 229 EQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQ 408
++ + LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ +Q L PG
Sbjct: 449 QEHDITLFVKAGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTN 508
Query: 409 LPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNP 588
PF+ + EV TD NKIEEFLE L PPRYPKL +PESN+AG D+FAKFSA+IKN+
Sbjct: 509 PPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKK 568
Query: 589 ALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPK 768
N+ EK LLKAL+ LDNYL SPLP+E+D S ED +S RKFLDG+ELTLADCNLLPK
Sbjct: 569 DANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPK 628
Query: 769 LHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
LHI+++V KKYR F P G+ RYL NAYAR+EF +TCP D+EIE AY VAK
Sbjct: 629 LHIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADQEIEHAYSDVAK 683
>ref|NP_058625.2| chloride intracellular channel protein 5 isoform b [Homo sapiens].
Length = 251
Score = 309 bits (792), Expect = 2e-84
Identities = 154/237 (64%), Positives = 182/237 (76%), Gaps = 1/237 (0%)
Frame = +1
Query: 226 EEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGG 405
+ P++ELFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ + L PG
Sbjct: 11 DRDPEIELFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGT 70
Query: 406 QLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSN 585
PFL + +V TD NKIEEFLE L P +YPKLAA + ESNTAG+DIF+KFSAYIKN+
Sbjct: 71 HPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNTK 130
Query: 586 PALNDNLEKGLLKALKVLDNYLTSPLPEEVD-ETSAEDEGISQRKFLDGNELTLADCNLL 762
N LE+GL KALK LD+YL +PLPEE+D T ED+G S+RKFLDG+ELTLADCNLL
Sbjct: 131 QQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKG-SRRKFLDGDELTLADCNLL 189
Query: 763 PKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
PKLH+V++V KKYR + IP G+ RYL+NAYAR+EF +TC D EIELAY VAK
Sbjct: 190 PKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYADVAK 246
>ref|NP_001107558.1| chloride intracellular channel protein 5 isoform a [Homo sapiens].
Length = 410
Score = 306 bits (785), Expect = 2e-83
Identities = 154/238 (64%), Positives = 181/238 (76%), Gaps = 1/238 (0%)
Frame = +1
Query: 223 AEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPG 402
A P++ LFVKAG DG IGNCPFSQRLFM+LWLKGV FNVTTVD KR+ + L PG
Sbjct: 169 AHMNPEIYLFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPG 228
Query: 403 GQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNS 582
PFL + +V TD NKIEEFLE L P +YPKLAA + ESNTAG+DIF+KFSAYIKN+
Sbjct: 229 THPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNT 288
Query: 583 NPALNDNLEKGLLKALKVLDNYLTSPLPEEVD-ETSAEDEGISQRKFLDGNELTLADCNL 759
N LE+GL KALK LD+YL +PLPEE+D T ED+G S+RKFLDG+ELTLADCNL
Sbjct: 289 KQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKG-SRRKFLDGDELTLADCNL 347
Query: 760 LPKLHIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
LPKLH+V++V KKYR + IP G+ RYL+NAYAR+EF +TC D EIELAY VAK
Sbjct: 348 LPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAYADVAK 405
>ref|NP_001280.3| chloride intracellular channel protein 2 [Homo sapiens].
Length = 247
Score = 291 bits (744), Expect = 9e-79
Identities = 144/233 (61%), Positives = 171/233 (73%)
Frame = +1
Query: 235 PQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLP 414
P++ELFVKAGSDG IGNCPF QRLFM+LWLKGV FNVTTVD R+ E ++ L PG P
Sbjct: 12 PEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPP 71
Query: 415 FLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPAL 594
FL+Y E+ TD KIEEFLE L PPRYP L+ ES G ++FAKFSAYIKN+
Sbjct: 72 FLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKEA 131
Query: 595 NDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLH 774
N N EK LLK K LD+YL +PL +E+D SAE+ +S+R FLDG++LTLADC+LLPKL+
Sbjct: 132 NKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLN 191
Query: 775 IVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQQVAK 933
I++V KKYR F IP F GV RYL NAYAREEF TCP+D+EIE Y VAK
Sbjct: 192 IIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTYANVAK 244
>ref|NP_004660.2| chloride intracellular channel protein 3 [Homo sapiens].
Length = 236
Score = 228 bits (582), Expect = 5e-60
Identities = 121/230 (52%), Positives = 154/230 (66%)
Frame = +1
Query: 232 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQL 411
+ +++LFVKA DG +G+CP QRLFMVL LKGV F +TTVDT+R + ++ PG QL
Sbjct: 3 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQL 62
Query: 412 PFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPA 591
P LLY ++ TDT +IE+FLE L PP +P LA ESNTAG D+F KFSA+IKN PA
Sbjct: 63 PILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPA 122
Query: 592 LNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKL 771
++ L + LL+AL LD+YL +PL E+ E S+R+FLDG+ LTLADC+LLPKL
Sbjct: 123 QDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRE--SRRRFLDGDRLTLADCSLLPKL 180
Query: 772 HIVQVVCKKYRGFSIPDAFRGVHRYLRNAYAREEFASTCPDDEEIELAYQ 921
HIV VC +R IP RGV RYL +A +EF TCP EI AY+
Sbjct: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYR 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,852,984
Number of extensions: 1303379
Number of successful extensions: 5184
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5150
Number of HSP's successfully gapped: 7
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007972
(1040 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1019 0.0
Sscrofa_Chr06 805 0.0
gb|GL893033.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 192 3e-46
>Sscrofa_Chr02
|| Length = 162569375
Score = 1019 bits (514), Expect = 0.0
Identities = 633/670 (94%), Gaps = 7/670 (1%)
Strand = Plus / Minus
Query: 371 ggactgagacggtgcagaaactgtgcccagggggacagctccctttcctgctgtacggca 430
||||||||| ||| ||||| || ||||||||||||||||||||||| ||||||||| |||
Sbjct: 81238041 ggactgagatggtacagaagctatgcccagggggacagctcccttttctgctgtacagca 81237982
Query: 431 ctgaagtgcacacagataccaacaagatcgaggaatttctggaggcagtgctatgccctc 490
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 81237981 ctgaagtgcacacagataccaacaagactgaggaatttctggaggcagtgctatgccctc 81237922
Query: 491 ccaggtaccccaagctggcagctctgaaccctgaatccaacacagctgggctggacatat 550
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 81237921 ccaggtaccccaagctggcagctctgaaccctgaatccaacacagctgggcta---atat 81237865
Query: 551 ttgctaaattttctgcctacattaagaattcaaacccagctctcaatgacaacctggaga 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81237864 ttgctaaattttctgcctacattaagaattcaaacccagctctcaatgacaacctggaga 81237805
Query: 611 aggggctcctgaaagccctgaaagtcttagacaattacttgacatcccctctcccagaag 670
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81237804 agggactcctgaaagccctgaaagtcttagacaattacttgacatcccctctcccagaag 81237745
Query: 671 aagtggatgagaccagtgctgaggatgagggcatctctcagaggaagtttctggatggca 730
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 81237744 aagtggatgagaccagtgctgaggatgagggaatctctcagaggaagtttctggatggca 81237685
Query: 731 atgagctcactttggctgactgcaacctgttgccaaagctccacatagtacaggtggtct 790
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 81237684 atgagctcactctggctgactgcaacctgttgccaaagctccacatagtacaagtggtct 81237625
Query: 791 gtaagaagtaccggggattctccattccggatgcgtttcgtggagtgcatcgatacctgc 850
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 81237624 gtaagaagtaccagggattctccattccggatgcgtttcgtggagtg---cgatacctgc 81237568
Query: 851 gcaatgcctatgctcgggaagagtttgcctccacctgtccagacgatgaggagatcgagc 910
||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 81237567 gcagtgcctatgctcgggaaaagtttgcctccacctgtccagacaatgaggagatcgagc 81237508
Query: 911 tggcctaccagcaagtggccaaggcccctcaaataaccctctcctggggctccttctccc 970
||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 81237507 tggcctaagagcaagtggccaagg-ccctcaaataaacctctcctggggctccttctccc 81237449
Query: 971 ccctcctccatttccttcacaagggccctgggtgttttccccgtggctacccagtgaaaa 1030
|||||||||||||||| ||||| |||||| |||||||||| | |||||| || || |||
Sbjct: 81237448 ccctcctccatttcctccacaaaggccctaggtgttttccacatggctatgcaatggaaa 81237389
Query: 1031 tggacccact 1040
||||| ||||
Sbjct: 81237388 tggacacact 81237379
Score = 280 bits (141), Expect = 1e-72
Identities = 153/157 (97%)
Strand = Plus / Minus
Query: 204 gctcttggtcgcaaccatggctgaagaacaacctcaggtcgaattgttcgtaaaggctgg 263
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 81238225 gctcttggtcgcaaccatggttgaagaacaacctcaggtcgaattgttcgtaaaggctgg 81238166
Query: 264 cagtgatggggccaagatcggaaactgccccttctcccagagactgttcatggtgctctg 323
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 81238165 cagtgatggggccaagatcagaaactgccccttctcccagagactgttcatggtgctctg 81238106
Query: 324 gctcaagggagttaccttcaatgtcaccactgtggac 360
|||||||||||| ||||||| ||||||||||||||||
Sbjct: 81238105 gctcaagggagtcaccttcagtgtcaccactgtggac 81238069
>Sscrofa_Chr06
|| Length = 157765593
Score = 805 bits (406), Expect = 0.0
Identities = 827/959 (86%), Gaps = 20/959 (2%)
Strand = Plus / Minus
Query: 71 gagtgagagggtctgatcgggctcgagcagcgctgaagggcccgtcctgggtctagggga 130
|||||||| |||||||| |||| ||||||||||||||||| ||||||||||| ||| |
Sbjct: 147556985 gagtgagaaggtctgataaggcttgagcagcgctgaagggctagtcctgggtcttgggca 147556926
Query: 131 gagaatctcttctgtgagacccgccttccccggccccggcccctcccagttcccccagcg 190
||||||| |||||||||||||| ||||||| ||||| |||||||||| ||||| || |
Sbjct: 147556925 gagaatcccttctgtgagacccaccttccctggccctagcccctcccacttccc--agtg 147556868
Query: 191 acggccgcttcctgctcttggtc-gcaaccatggctgaagaacaacctcaggtcgaattg 249
|| ||| ||||||| || | | | ||||||| ||||| ||||| ||||| ||| |
Sbjct: 147556867 acagccacttcctggtccttctgagaaaccatgcctgaaaaacaattgcaggttgaactt 147556808
Query: 250 ttcgtaaaggctggcagtgatggggccaagatcggaaactgccccttctcccagagactg 309
||||| |||||||||||||||||||| || || || | ||| || ||||||||||||||
Sbjct: 147556807 ttcgtgaaggctggcagtgatggggctaaaattgggacctgttccatctcccagagactg 147556748
Query: 310 ttcatggtgctctggctcaagggagttaccttcaatgtcaccactgtggacaccaagagg 369
|| |||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||
Sbjct: 147556747 tttatggtgctctggatcaagggagtcaccttcaatgtcatcactgttgacaccaagaga 147556688
Query: 370 cggactgagacggtgcagaaactgtgcccaggggga-cagctccctttcctgctgtacgg 428
||||||||||||| ||||| ||| |||||||||| ||||||||||||||| |||| ||
Sbjct: 147556687 tggactgagacggtacagaagctgagcccagggggggcagctccctttcctgttgtatgg 147556628
Query: 429 cactgaagtgcacacagataccaacaagatcgaggaatttctggaggcagtgctatgccc 488
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 147556627 cactgaagtgcacacagataccaacaagattgaggaatttctggaggcagtgctatgccc 147556568
Query: 489 tcccaggtaccccaagctggcagctctgaaccctgaatccaacacagctgggctggacat 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 147556567 tcccaggtaccccaagctggcagctctgaaccctgaatccaacacagctgggctagacat 147556508
Query: 549 atttgctaaattttctgcctacattaagaattcaaacccagctctcaatgacaacctgga 608
||||||| ||||||||||||| || ||||||||| |||||| |||||||||||||||||
Sbjct: 147556507 atttgctcaattttctgcctatatcaagaattcacacccagacctcaatgacaacctgga 147556448
Query: 609 gaaggggctcctgaaagccctgaaagtcttagacaattacttgacatcccctctcccaga 668
||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 147556447 gaagggggtccagaaagccctgaaagtcttagacaattacttgacatccccactcccaga 147556388
Query: 669 agaagtggatgagaccagtgctgaggatgagggcatctctcagaggaagtttctggatgg 728
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||
Sbjct: 147556387 agaagtggatgagaccagtgctgaggataagggcatctctcagaggaagttt-taaacgg 147556329
Query: 729 caatgagctcactttggctgactgcaacctgttgccaaagctccacatagtacaggt-gg 787
||| || |||||| |||| |||||||||| || |||||||||||||||| |||| | ||
Sbjct: 147556328 caacgaactcactctggccaactgcaacctattaccaaagctccacataggacagctagg 147556269
Query: 788 tctgtaagaagtaccggggattctccattccggatgcgtttcgtggagtgcatcgatacc 847
| ||||| |||||| |||||||||||||||| | || |||| | || |||||
Sbjct: 147556268 tatgtaaaaagtactggggattctccattccaggtgggttttgcagaatgcat------- 147556216
Query: 848 tgcgcaatgcctatgctcgggaagagtttgcctccacctgtccagacgatgaggagatcg 907
| ||| ||||| || |||||| ||||||||||||| || ||| ||||||||||||
Sbjct: 147556215 --ctcaaagcctacacttgggaagtatttgcctccacctatctagatgatgaggagatca 147556158
Query: 908 agctggcctaccagcaagtggccaaggcccctcaaataaccctctcctggggctccttct 967
|| |||| ||| | |||||||||||| ||||||||||| || ||||| | |||||||
Sbjct: 147556157 agttggcttacgaataagtggccaagg-ccctcaaataagcccctcctagagctcctt-- 147556101
Query: 968 cccccctcctccatttccttcacaagggccctgggtgttttccccgtggctacccagtg 1026
|||||| ||||||| ||| ||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 147556100 -ccccct-ctccattccctccacaaaggccctgggtggtttccacgtggctacccagtg 147556044
>gb|GL893033.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1839
Length = 14809
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 agtccaggagggggtagagctggaggcgctgggtgtggagtccgcaggactggtcgggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13506 agtccaggagggggtagagctggaggcgctgggtgtggagtccgcaggactggtcgggag 13565
Query: 61 gccgtgtcgggagtgagagggtctgatcgggctcgag 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 13566 gccgtgtcgggagtgagagggtctgatcgggctcgag 13602
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 150 cccgccttccccggccccggcccctcccagttcccccagcgacggccgcttcctgctctt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13703 cccgccttccccggccccggcccctcccagttcccccagcgacggccgcttcctgctctt 13762
Query: 210 ggtcg 214
|||||
Sbjct: 13763 ggtcg 13767
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,473,823
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 7
Length of query: 1040
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1019
Effective length of database: 2,808,413,156
Effective search space: 2861773005964
Effective search space used: 2861773005964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)