Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007974
(688 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033592.1| translocon-associated protein subunit delta ... 295 2e-80
>ref|NP_001033592.1| translocon-associated protein subunit delta precursor [Bos taurus].
Length = 172
Score = 295 bits (756), Expect = 2e-80
Identities = 145/147 (98%), Positives = 147/147 (100%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
VEPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 26 VEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 85
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW
Sbjct: 86 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 145
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 146 VSTEVLAAAIGLVIYYLAFSAKSHIQA 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,883,895
Number of extensions: 918745
Number of successful extensions: 4086
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4069
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 130
Effective length of database: 14,405,662
Effective search space: 1872736060
Effective search space used: 1872736060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007974
(688 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191685.1| translocon-associated protein subunit delta ... 295 3e-80
>ref|NP_001191685.1| translocon-associated protein subunit delta [Canis lupus
familiaris].
Length = 173
Score = 295 bits (754), Expect = 3e-80
Identities = 143/147 (97%), Positives = 147/147 (100%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
VEPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 VEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAAIGLVIYYLAFSAKSHIQA 173
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 28,735,926
Number of extensions: 895477
Number of successful extensions: 4294
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4268
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 130
Effective length of database: 15,574,240
Effective search space: 2024651200
Effective search space used: 2024651200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007974
(688 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135530.1| PREDICTED: translocon-associated protein sub... 297 3e-81
Alignment gi|XP_003360544.1| PREDICTED: translocon-associated protein sub... 241 3e-64
>ref|XP_003135530.1| PREDICTED: translocon-associated protein subunit delta-like isoform
1 [Sus scrofa].
Length = 173
Score = 297 bits (761), Expect = 3e-81
Identities = 147/147 (100%), Positives = 147/147 (100%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 146
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>ref|XP_003360544.1| PREDICTED: translocon-associated protein subunit delta-like isoform
2 [Sus scrofa].
Length = 151
Score = 241 bits (615), Expect = 3e-64
Identities = 125/147 (85%), Positives = 125/147 (85%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRK GTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRK----------------------GTWNGPW 124
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 125 VSTEVLAAAIGLVIYYLAFSAKSHIQA 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,446,079
Number of extensions: 664964
Number of successful extensions: 2664
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2660
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,978,717
Effective search space: 1203148078
Effective search space used: 1203148078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007974
(688 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159952.1| translocon-associated protein subunit delta ... 290 7e-79
Alignment gi|NP_033305.1| translocon-associated protein subunit delta iso... 290 7e-79
>ref|NP_001159952.1| translocon-associated protein subunit delta isoform 1 precursor
[Mus musculus].
Length = 173
Score = 290 bits (742), Expect = 7e-79
Identities = 140/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSL+HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVS+IPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLEHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSIIPPLFTVSVDHRGTWNGPW 146
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAA IG+VIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAVIGIVIYYLAFSAKSHIQA 173
>ref|NP_033305.1| translocon-associated protein subunit delta isoform 2 precursor
[Mus musculus].
Length = 172
Score = 290 bits (742), Expect = 7e-79
Identities = 140/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 26 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 85
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSL+HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVS+IPPLFTVSVDHRGTWNGPW
Sbjct: 86 QVSWSLEHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSIIPPLFTVSVDHRGTWNGPW 145
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAA IG+VIYYLAFSAKSHIQA
Sbjct: 146 VSTEVLAAVIGIVIYYLAFSAKSHIQA 172
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,580,514
Number of extensions: 706965
Number of successful extensions: 2840
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2816
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 131
Effective length of database: 12,674,031
Effective search space: 1660298061
Effective search space used: 1660298061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007974
(688 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191456.1| translocon-associated protein subunit delta ... 292 2e-79
Alignment gi|NP_006271.1| translocon-associated protein subunit delta iso... 292 2e-79
Alignment gi|NP_001191455.1| translocon-associated protein subunit delta ... 292 2e-79
>ref|NP_001191456.1| translocon-associated protein subunit delta isoform 3 precursor
[Homo sapiens].
Length = 181
Score = 292 bits (747), Expect = 2e-79
Identities = 141/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADV GKQFPVTRGQDVGRY
Sbjct: 35 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRY 94
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 95 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 154
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 155 VSTEVLAAAIGLVIYYLAFSAKSHIQA 181
>ref|NP_006271.1| translocon-associated protein subunit delta isoform 2 precursor
[Homo sapiens].
Length = 173
Score = 292 bits (747), Expect = 2e-79
Identities = 141/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADV GKQFPVTRGQDVGRY
Sbjct: 27 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRY 86
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>ref|NP_001191455.1| translocon-associated protein subunit delta isoform 1 precursor
[Homo sapiens].
Length = 184
Score = 292 bits (747), Expect = 2e-79
Identities = 141/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 136 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 315
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADV GKQFPVTRGQDVGRY
Sbjct: 38 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRY 97
Query: 316 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 495
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 98 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 157
Query: 496 VSTEVLAAAIGLVIYYLAFSAKSHIQA 576
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 158 VSTEVLAAAIGLVIYYLAFSAKSHIQA 184
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,107,431
Number of extensions: 863589
Number of successful extensions: 3758
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3728
Number of HSP's successfully gapped: 3
Length of query: 229
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 130
Effective length of database: 15,033,728
Effective search space: 1954384640
Effective search space used: 1954384640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007974
(688 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 317 4e-84
Sscrofa_Chr06 111 5e-22
>Sscrofa_ChrX
|| Length = 144288218
Score = 317 bits (160), Expect = 4e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 474 gggcacttggaacgggccctgggtctccacagaggtcctggccgcagccattggcctggt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142106072 gggcacttggaacgggccctgggtctccacagaggtcctggccgcagccattggcctggt 142106131
Query: 534 gatctactacctggccttcagtgccaagagccacatccaggcctgagggtgctgcccccg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142106132 gatctactacctggccttcagtgccaagagccacatccaggcctgagggtgctgcccccg 142106191
Query: 594 gatccccggcttctttcaataaagagttactggctacgcc 633
||||||||||||||||||||||||||||||||||||||||
Sbjct: 142106192 gatccccggcttctttcaataaagagttactggctacgcc 142106231
Score = 246 bits (124), Expect = 1e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 gtctgctcctcgtgttcaggggagtcgctctcttttttcctcggcagagaagaggcgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142102256 gtctgctcctcgtgttcaggggagtcgctctcttttttcctcggcagagaagaggcgatg 142102315
Query: 61 gcggcgctggcatctctcggcgccctggcgctactcctgctgtccggcctctcctgctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142102316 gcggcgctggcatctctcggcgccctggcgctactcctgctgtccggcctctcctgctgc 142102375
Query: 121 tcag 124
||||
Sbjct: 142102376 tcag 142102379
Score = 242 bits (122), Expect = 2e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 122 cagcagaggcctgtgtggagccccagatcacgccctcgtactataccacgtcggacgccg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142104216 cagcagaggcctgtgtggagccccagatcacgccctcgtactataccacgtcggacgccg 142104275
Query: 182 tcatctccacagagaccgtgttcatcgtggaactctccgtgacgtgcaagaacagggtcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142104276 tcatctccacagagaccgtgttcatcgtggaactctccgtgacgtgcaagaacagggtcc 142104335
Query: 242 ag 243
||
Sbjct: 142104336 ag 142104337
Score = 186 bits (94), Expect = 1e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 316 caggtgtcctggagcctggaccacaagagcgcacatgcgggcacctacgaggtcaggttc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142105542 caggtgtcctggagcctggaccacaagagcgcacatgcgggcacctacgaggtcaggttc 142105601
Query: 376 ttcgatgaggagtcctacagcctcctgaggaagg 409
||||||||||||||||||||||||||||||||||
Sbjct: 142105602 ttcgatgaggagtcctacagcctcctgaggaagg 142105635
Score = 159 bits (80), Expect = 2e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 241 cagaacatggctctttatgctgacgtcagtggtaaacagtttcctgtcacccggggccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142105308 cagaacatggctctttatgctgacgtcagtggtaaacagtttcctgtcacccggggccaa 142105367
Query: 301 gacgtggggcgttatcaggt 320
||||||||||||||||||||
Sbjct: 142105368 gacgtggggcgttatcaggt 142105387
Score = 137 bits (69), Expect = 9e-30
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 407 aggctcagagaaataacgaggacgtttccgtcatcccgcctctgttcacagtcagcgtgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142105840 aggctcagagaaataacgaggacgtttccgtcatcccgcctctgttcacagtcagcgtgg 142105899
Query: 467 accatcggg 475
|||||||||
Sbjct: 142105900 accatcggg 142105908
>Sscrofa_Chr06
|| Length = 157765593
Score = 111 bits (56), Expect = 5e-22
Identities = 260/327 (79%), Gaps = 17/327 (5%)
Strand = Plus / Minus
Query: 230 agaacagggtccagaacatggctctttatgctgacgtcagtggtaaacagtttcctgtca 289
|||||||| ||||||||| |||||| | ||||||| ||||||| ||||| | ||||||||
Sbjct: 47307930 agaacaggatccagaacacggctctctgtgctgacctcagtggaaaacaatgtcctgtca 47307871
Query: 290 cccggggccaagacgtggggcgttatcaggtgtcctggagcctggaccacaagagcgcac 349
| | |||||| ||| |||| || || |||||| ||||||||| ||||||
Sbjct: 47307870 ctcagggccaggacatggg-cgctaccaggtgccctggagcccagaccac---------- 47307822
Query: 350 atgcgggcacctacgaggtcaggttcttcgatgaggagtcctacagcctcctgaggaagg 409
|||||||||||| |||||| ||||| || |||||||||| |||||||| |||| |||
Sbjct: 47307821 --gcgggcacctacaaggtcaaattctttgacgaggagtcctgcagcctcccgagggagg 47307764
Query: 410 ctcagagaaataacgaggacgtttccgtcatcccgcctctgttcacagtcagcgtggacc 469
| |||| ||||| |||||| | || || |||| |||||||| | |||||||||||||
Sbjct: 47307763 cgcagacaaatactgaggacactaccatcgtcccacctctgtt--cggtcagcgtggacc 47307706
Query: 470 atcggggcacttggaacgggccctgggtctccacagaggtcctggc--cgcagccattgg 527
|||||||||||||| |||||| | |||||||| ||||| | ||| |||||||||||
Sbjct: 47307705 atcggggcacttggcgtgggccccgcgtctccaccgaggtaccggctttgcagccattgg 47307646
Query: 528 cctggtgatctactacctggccttcag 554
||| |||| | | |||||||| |||||
Sbjct: 47307645 cctagtgaccgattacctggctttcag 47307619
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,253,353
Number of extensions: 306
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 7
Length of query: 688
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 667
Effective length of database: 2,808,413,156
Effective search space: 1873211575052
Effective search space used: 1873211575052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)