Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007975
(628 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033592.1| translocon-associated protein subunit delta ... 295 2e-80
>ref|NP_001033592.1| translocon-associated protein subunit delta precursor [Bos taurus].
Length = 172
Score = 295 bits (756), Expect = 2e-80
Identities = 145/147 (98%), Positives = 147/147 (100%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
VEPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 26 VEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 85
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW
Sbjct: 86 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 145
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 146 VSTEVLAAAIGLVIYYLAFSAKSHIQA 172
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,478,685
Number of extensions: 886612
Number of successful extensions: 3834
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 111
Effective length of database: 14,438,750
Effective search space: 1602701250
Effective search space used: 1602701250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007975
(628 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191685.1| translocon-associated protein subunit delta ... 295 3e-80
>ref|NP_001191685.1| translocon-associated protein subunit delta [Canis lupus
familiaris].
Length = 173
Score = 295 bits (754), Expect = 3e-80
Identities = 143/147 (97%), Positives = 147/147 (100%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
VEPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 VEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAAIGLVIYYLAFSAKSHIQA 173
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,398,364
Number of extensions: 892631
Number of successful extensions: 4046
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4033
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 111
Effective length of database: 15,607,576
Effective search space: 1732440936
Effective search space used: 1732440936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007975
(628 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135530.1| PREDICTED: translocon-associated protein sub... 297 3e-81
Alignment gi|XP_003360544.1| PREDICTED: translocon-associated protein sub... 241 2e-64
>ref|XP_003135530.1| PREDICTED: translocon-associated protein subunit delta-like isoform
1 [Sus scrofa].
Length = 173
Score = 297 bits (761), Expect = 3e-81
Identities = 147/147 (100%), Positives = 147/147 (100%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 146
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>ref|XP_003360544.1| PREDICTED: translocon-associated protein subunit delta-like isoform
2 [Sus scrofa].
Length = 151
Score = 241 bits (615), Expect = 2e-64
Identities = 125/147 (85%), Positives = 125/147 (85%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRK GTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRK----------------------GTWNGPW 124
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 125 VSTEVLAAAIGLVIYYLAFSAKSHIQA 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,301,293
Number of extensions: 604815
Number of successful extensions: 2502
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 115
Effective length of database: 9,003,614
Effective search space: 1035415610
Effective search space used: 1035415610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007975
(628 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159952.1| translocon-associated protein subunit delta ... 290 6e-79
Alignment gi|NP_033305.1| translocon-associated protein subunit delta iso... 290 6e-79
>ref|NP_001159952.1| translocon-associated protein subunit delta isoform 1 precursor
[Mus musculus].
Length = 173
Score = 290 bits (742), Expect = 6e-79
Identities = 140/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 27 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 86
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSL+HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVS+IPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLEHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSIIPPLFTVSVDHRGTWNGPW 146
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAA IG+VIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAVIGIVIYYLAFSAKSHIQA 173
>ref|NP_033305.1| translocon-associated protein subunit delta isoform 2 precursor
[Mus musculus].
Length = 172
Score = 290 bits (742), Expect = 6e-79
Identities = 140/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADVSGKQFPVTRGQDVGRY
Sbjct: 26 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 85
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSL+HKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVS+IPPLFTVSVDHRGTWNGPW
Sbjct: 86 QVSWSLEHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSIIPPLFTVSVDHRGTWNGPW 145
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAA IG+VIYYLAFSAKSHIQA
Sbjct: 146 VSTEVLAAVIGIVIYYLAFSAKSHIQA 172
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,466,009
Number of extensions: 704100
Number of successful extensions: 2687
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2665
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 112
Effective length of database: 12,704,067
Effective search space: 1422855504
Effective search space used: 1422855504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007975
(628 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191456.1| translocon-associated protein subunit delta ... 292 2e-79
Alignment gi|NP_006271.1| translocon-associated protein subunit delta iso... 292 2e-79
Alignment gi|NP_001191455.1| translocon-associated protein subunit delta ... 292 2e-79
>ref|NP_001191456.1| translocon-associated protein subunit delta isoform 3 precursor
[Homo sapiens].
Length = 181
Score = 292 bits (747), Expect = 2e-79
Identities = 141/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADV GKQFPVTRGQDVGRY
Sbjct: 35 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRY 94
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 95 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 154
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 155 VSTEVLAAAIGLVIYYLAFSAKSHIQA 181
>ref|NP_006271.1| translocon-associated protein subunit delta isoform 2 precursor
[Homo sapiens].
Length = 173
Score = 292 bits (747), Expect = 2e-79
Identities = 141/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADV GKQFPVTRGQDVGRY
Sbjct: 27 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRY 86
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 87 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 147 VSTEVLAAAIGLVIYYLAFSAKSHIQA 173
>ref|NP_001191455.1| translocon-associated protein subunit delta isoform 1 precursor
[Homo sapiens].
Length = 184
Score = 292 bits (747), Expect = 2e-79
Identities = 141/147 (95%), Positives = 146/147 (99%)
Frame = +1
Query: 109 VEPQITPSYYTTSDAVISTETVFIVELSVTCKNRVQNMALYADVSGKQFPVTRGQDVGRY 288
+EPQITPSYYTTSDAVISTETVFIVE+S+TCKNRVQNMALYADV GKQFPVTRGQDVGRY
Sbjct: 38 LEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDVGRY 97
Query: 289 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDVSVIPPLFTVSVDHRGTWNGPW 468
QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNED+S+IPPLFTVSVDHRGTWNGPW
Sbjct: 98 QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 157
Query: 469 VSTEVLAAAIGLVIYYLAFSAKSHIQA 549
VSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 158 VSTEVLAAAIGLVIYYLAFSAKSHIQA 184
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,814,141
Number of extensions: 863567
Number of successful extensions: 3534
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3506
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 111
Effective length of database: 15,066,692
Effective search space: 1672402812
Effective search space used: 1672402812
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007975
(628 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 307 4e-81
Sscrofa_Chr06 111 5e-22
>Sscrofa_ChrX
|| Length = 144288218
Score = 307 bits (155), Expect = 4e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 447 gggcacttggaacgggccctgggtctccacagaggtcctggccgcagccattggcctggt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142106072 gggcacttggaacgggccctgggtctccacagaggtcctggccgcagccattggcctggt 142106131
Query: 507 gatctactacctggccttcagtgccaagagccacatccaggcctgagggtgctgcccccg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142106132 gatctactacctggccttcagtgccaagagccacatccaggcctgagggtgctgcccccg 142106191
Query: 567 gatccccggcttctttcaataaagagttactggct 601
|||||||||||||||||||||||||||||||||||
Sbjct: 142106192 gatccccggcttctttcaataaagagttactggct 142106226
Score = 242 bits (122), Expect = 2e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 95 cagcagaggcctgtgtggagccccagatcacgccctcgtactataccacgtcggacgccg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142104216 cagcagaggcctgtgtggagccccagatcacgccctcgtactataccacgtcggacgccg 142104275
Query: 155 tcatctccacagagaccgtgttcatcgtggaactctccgtgacgtgcaagaacagggtcc 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142104276 tcatctccacagagaccgtgttcatcgtggaactctccgtgacgtgcaagaacagggtcc 142104335
Query: 215 ag 216
||
Sbjct: 142104336 ag 142104337
Score = 188 bits (95), Expect = 2e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 3 ctcttttttcctcggcagagaagaggcgatggcggcgctggcatctctcggcgccctggc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142102285 ctcttttttcctcggcagagaagaggcgatggcggcgctggcatctctcggcgccctggc 142102344
Query: 63 gctactcctgctgtccggcctctcctgctgctcag 97
|||||||||||||||||||||||||||||||||||
Sbjct: 142102345 gctactcctgctgtccggcctctcctgctgctcag 142102379
Score = 186 bits (94), Expect = 1e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 289 caggtgtcctggagcctggaccacaagagcgcacatgcgggcacctacgaggtcaggttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142105542 caggtgtcctggagcctggaccacaagagcgcacatgcgggcacctacgaggtcaggttc 142105601
Query: 349 ttcgatgaggagtcctacagcctcctgaggaagg 382
||||||||||||||||||||||||||||||||||
Sbjct: 142105602 ttcgatgaggagtcctacagcctcctgaggaagg 142105635
Score = 159 bits (80), Expect = 2e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 214 cagaacatggctctttatgctgacgtcagtggtaaacagtttcctgtcacccggggccaa 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142105308 cagaacatggctctttatgctgacgtcagtggtaaacagtttcctgtcacccggggccaa 142105367
Query: 274 gacgtggggcgttatcaggt 293
||||||||||||||||||||
Sbjct: 142105368 gacgtggggcgttatcaggt 142105387
Score = 137 bits (69), Expect = 8e-30
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 380 aggctcagagaaataacgaggacgtttccgtcatcccgcctctgttcacagtcagcgtgg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142105840 aggctcagagaaataacgaggacgtttccgtcatcccgcctctgttcacagtcagcgtgg 142105899
Query: 440 accatcggg 448
|||||||||
Sbjct: 142105900 accatcggg 142105908
>Sscrofa_Chr06
|| Length = 157765593
Score = 111 bits (56), Expect = 5e-22
Identities = 260/327 (79%), Gaps = 17/327 (5%)
Strand = Plus / Minus
Query: 203 agaacagggtccagaacatggctctttatgctgacgtcagtggtaaacagtttcctgtca 262
|||||||| ||||||||| |||||| | ||||||| ||||||| ||||| | ||||||||
Sbjct: 47307930 agaacaggatccagaacacggctctctgtgctgacctcagtggaaaacaatgtcctgtca 47307871
Query: 263 cccggggccaagacgtggggcgttatcaggtgtcctggagcctggaccacaagagcgcac 322
| | |||||| ||| |||| || || |||||| ||||||||| ||||||
Sbjct: 47307870 ctcagggccaggacatggg-cgctaccaggtgccctggagcccagaccac---------- 47307822
Query: 323 atgcgggcacctacgaggtcaggttcttcgatgaggagtcctacagcctcctgaggaagg 382
|||||||||||| |||||| ||||| || |||||||||| |||||||| |||| |||
Sbjct: 47307821 --gcgggcacctacaaggtcaaattctttgacgaggagtcctgcagcctcccgagggagg 47307764
Query: 383 ctcagagaaataacgaggacgtttccgtcatcccgcctctgttcacagtcagcgtggacc 442
| |||| ||||| |||||| | || || |||| |||||||| | |||||||||||||
Sbjct: 47307763 cgcagacaaatactgaggacactaccatcgtcccacctctgtt--cggtcagcgtggacc 47307706
Query: 443 atcggggcacttggaacgggccctgggtctccacagaggtcctggc--cgcagccattgg 500
|||||||||||||| |||||| | |||||||| ||||| | ||| |||||||||||
Sbjct: 47307705 atcggggcacttggcgtgggccccgcgtctccaccgaggtaccggctttgcagccattgg 47307646
Query: 501 cctggtgatctactacctggccttcag 527
||| |||| | | |||||||| |||||
Sbjct: 47307645 cctagtgaccgattacctggctttcag 47307619
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,650,153
Number of extensions: 296
Number of successful extensions: 296
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 7
Length of query: 628
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 607
Effective length of database: 2,808,413,156
Effective search space: 1704706785692
Effective search space used: 1704706785692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)