Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007981
(1419 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033763.1| lipopolysaccharide-binding protein precursor... 600 e-172
Alignment gi|NP_776320.1| bactericidal permeability-increasing protein pr... 367 e-101
Alignment gi|XP_002692362.1| PREDICTED: lipopolysaccharide-binding protei... 327 2e-89
Alignment gi|XP_592903.2| PREDICTED: lipopolysaccharide-binding protein-l... 327 2e-89
Alignment gi|NP_001192763.1| bactericidal/permeability-increasing protein... 131 1e-30
Alignment gi|XP_002687717.1| PREDICTED: bactericidal/permeability-increas... 131 1e-30
Alignment gi|NP_001030199.1| phospholipid transfer protein [Bos taurus]. 122 1e-27
Alignment gi|NP_001180123.1| bactericidal/permeability-increasing protein... 80 4e-15
Alignment gi|XP_002692339.1| PREDICTED: bactericidal/permeability-increas... 80 4e-15
Alignment gi|XP_002692341.1| PREDICTED: long palate lung and nasal epithe... 57 3e-08
>ref|NP_001033763.1| lipopolysaccharide-binding protein precursor [Bos taurus].
Length = 481
Score = 600 bits (1548), Expect = e-172
Identities = 308/436 (70%), Positives = 354/436 (81%), Gaps = 1/436 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPGLV RIT++GLEYVA+E + LQSKLHKVTLPDFNGD +IK+ G Y FHSL+I SC
Sbjct: 27 NPGLVVRITDQGLEYVAQEELLALQSKLHKVTLPDFNGDVRIKHFGSVDYRFHSLNIQSC 86
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
+LLGS L LP+QGL+ +ISDS I+V G WKVRK IL+LDGSFDVKVKGITISVNLLL S
Sbjct: 87 KLLGSALKLLPNQGLHFSISDSFIQVTGDWKVRKRILRLDGSFDVKVKGITISVNLLLDS 146
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
E SGRP VAVSSCSSHI DVE H+SGDL WLLNLFHNQIESRFRR LESKICE I+D V
Sbjct: 147 EPSGRPKVAVSSCSSHIRDVEVHISGDLGWLLNLFHNQIESRFRRVLESKICEIIEDSVT 206
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
S+LQPYLQT+PVTTEID+LAG+DYSL+ AP+ATAQMLDVM KGEIFS D R PV FLAPV
Sbjct: 207 SELQPYLQTLPVTTEIDHLAGLDYSLMGAPQATAQMLDVMFKGEIFSRDDRFPVAFLAPV 266
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 1014
M LPEEHSRMVYFA+SDY F TASLVY++AGFLNF+ITDD++PP S+IR T SFR FVP
Sbjct: 267 MNLPEEHSRMVYFAISDYAFNTASLVYHKAGFLNFTITDDVIPPDSSIRQNTKSFRAFVP 326
Query: 1015 RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 1194
R+ARLYPN NLEL+GA++SAP LNF GNLS+ Q+E+E FVLLPNSV+EPVFRL +ATN
Sbjct: 327 RIARLYPNTNLELQGAVISAPCLNFSPGNLSTAAQMEIEAFVLLPNSVKEPVFRLSVATN 386
Query: 1195 VSATLTXHTSKITGFLKPGKIQMELKESKVGIXHVXXXXXXXXXXXXHNSTPRXMDSWQK 1374
VSA LT +TSKITGFL+PGKIQ+ELKESKVG +V +N P+ D +
Sbjct: 387 VSAMLTFNTSKITGFLEPGKIQVELKESKVGRFNVELLEALLNYYLLNNFYPKVNDKLAE 446
Query: 1375 ASP-SSAXYIQLHDPV 1419
P IQL+DP+
Sbjct: 447 GFPLPLLRKIQLYDPI 462
>ref|NP_776320.1| bactericidal permeability-increasing protein precursor [Bos taurus].
Length = 482
Score = 367 bits (941), Expect = e-101
Identities = 182/393 (46%), Positives = 260/393 (66%), Gaps = 2/393 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG+VARIT KGL+Y ++GV TLQ +L K+T+P+F+G+FKIKY+G+G Y F S+ I
Sbjct: 28 NPGIVARITQKGLDYACQQGVLTLQKELEKITIPNFSGNFKIKYLGKGQYSFFSMVIQGF 87
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
L S + PLP +GL L+I D+SI+++GKWK RK +KL G+FD+ V+GI+I L LG
Sbjct: 88 NLPNSQIRPLPDKGLDLSIRDASIKIRGKWKARKNFIKLGGNFDLSVEGISILAGLNLGY 147
Query: 475 E-SSGRPTVAVSSCSSHIDDVETHMSGD-LSWLLNLFHNQIESRFRRTLESKICEEIQDL 648
+ +SG TV SSCSS I+ V H+SG L WL+ LF +IES ++++ KICE +
Sbjct: 148 DPASGHSTVTCSSCSSGINTVRIHISGSSLGWLIQLFRKRIESLLQKSMTRKICEVVTST 207
Query: 649 VASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLA 828
V+S LQPY QT+PVTT++D +AG+DYSLV PRATA LD ++KGE FSL HRSP F
Sbjct: 208 VSSKLQPYFQTLPVTTKLDKVAGVDYSLVAPPRATANNLDWLLKGEFFSLAHRSPPPFAP 267
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P + P +H RMVY +S+Y F TA VY +AG LN ++ DD++P S RLTT F
Sbjct: 268 PALAFPSDHDRMVYLGISEYFFNTAGFVYQKAGALNLTLRDDMIPKESKFRLTTKFFGIL 327
Query: 1009 VPRLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
+P++A+++P+M ++L P L +L ++ + F +LPNS +P+F L M
Sbjct: 328 IPQVAKMFPDMQMQLFIWASLPPKLTMKPSSLDLIFVLDTQAFAILPNSSLDPLFLLEMN 387
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKESKVG 1287
N+S + + ++ G L+ K+ +ELK S +G
Sbjct: 388 LNLSVVVGAKSDRLIGELRLDKLLLELKHSDIG 420
>ref|XP_002692362.1| PREDICTED: lipopolysaccharide-binding protein-like [Bos taurus].
Length = 535
Score = 327 bits (838), Expect = 2e-89
Identities = 181/451 (40%), Positives = 266/451 (58%), Gaps = 56/451 (12%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG + RIT KGLEY + GVATL++ L + LPD +G + I ++G +Y F + IH
Sbjct: 27 NPGFMVRITGKGLEYAHQYGVATLKNDLSTIKLPDLSGSYGIGWLGSVNYVFSGMRIHHF 86
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
L S L+ P QG+ ++S++ + V G WKV+K + L G+FD+ V G+++ V+L L
Sbjct: 87 LLRNSQLSLHPRQGIKASLSNNHVSVSGNWKVKKSFITLHGTFDLSVDGMSVLVSLNLDK 146
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
+ SGRPTV+V+ C + I V +SG +SW+LNLFH +IE+ + LE KIC+ +++ A
Sbjct: 147 DQSGRPTVSVTHCHNFIGHVSIEISGHISWILNLFHERIENNVKNILEQKICKMVKESAA 206
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
S L+PYL+T+PVT+ ID +AGIDY LV AP+ T Q LD KGE F + S V F AP
Sbjct: 207 SRLEPYLRTLPVTSMIDQIAGIDYRLVGAPQVTFQGLDTPFKGEFFGRNWNSSVPFDAPP 266
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDD-------------------- 954
+ LP++H M+YFAVS+YVF TAS VY++AG + F+I +
Sbjct: 267 IMLPQKHDHMIYFAVSEYVFNTASRVYHQAGQMKFTIQNKHIQNLTKFINHKSAKNWRKQ 326
Query: 955 ------------------------------LVPPTSNIRLTTNSFRTFVPRLARLYPNMN 1044
+P I+L T+SF +P+LARLYPNM
Sbjct: 327 HLRPRCLTSKSTPLTTLASCFSSGFLLGVLQIPLNFPIQLHTSSFWAIIPQLARLYPNME 386
Query: 1045 LELRGAMVSAPFLNFGSGNLSSTPQIEVEGFV----LLPNSV-REPVFRLGMATNVSATL 1209
LEL + SAPFL F GN++ P ++++ FV L P S R+P+F++ +TN+S T+
Sbjct: 387 LELETSPESAPFLTFTPGNVTFMPVMDIQAFVLDEDLWPKSAGRKPLFQIRASTNISITI 446
Query: 1210 TXHTSKITGFLKPG-KIQMELKESKVGIXHV 1299
++S+ITG L G ++++ELK S +G +V
Sbjct: 447 NVNSSRITGSLTTGSELKLELKHSNIGFFNV 477
>ref|XP_592903.2| PREDICTED: lipopolysaccharide-binding protein-like [Bos taurus].
Length = 535
Score = 327 bits (838), Expect = 2e-89
Identities = 181/451 (40%), Positives = 266/451 (58%), Gaps = 56/451 (12%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG + RIT KGLEY + GVATL++ L + LPD +G + I ++G +Y F + IH
Sbjct: 27 NPGFMVRITGKGLEYAHQYGVATLKNDLSTIKLPDLSGSYGIGWLGSVNYVFSGMRIHHF 86
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
L S L+ P QG+ ++S++ + V G WKV+K + L G+FD+ V G+++ V+L L
Sbjct: 87 LLRNSQLSLHPRQGIKASLSNNHVSVSGNWKVKKSFITLHGTFDLSVDGMSVLVSLNLDK 146
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
+ SGRPTV+V+ C + I V +SG +SW+LNLFH +IE+ + LE KIC+ +++ A
Sbjct: 147 DQSGRPTVSVTHCHNFIGHVSIEISGHISWILNLFHERIENNVKNILEQKICKMVKESAA 206
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
S L+PYL+T+PVT+ ID +AGIDY LV AP+ T Q LD KGE F + S V F AP
Sbjct: 207 SRLEPYLRTLPVTSMIDQIAGIDYRLVGAPQVTFQGLDTPFKGEFFGRNWNSSVPFDAPP 266
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDD-------------------- 954
+ LP++H M+YFAVS+YVF TAS VY++AG + F+I +
Sbjct: 267 IMLPQKHDHMIYFAVSEYVFNTASRVYHQAGQMKFTIQNKHIQNLTKFINHKSAKNWRKQ 326
Query: 955 ------------------------------LVPPTSNIRLTTNSFRTFVPRLARLYPNMN 1044
+P I+L T+SF +P+LARLYPNM
Sbjct: 327 HLRPRCLTSKSTPLTTLASCFSSGFLLGVLQIPLNFPIQLHTSSFWAIIPQLARLYPNME 386
Query: 1045 LELRGAMVSAPFLNFGSGNLSSTPQIEVEGFV----LLPNSV-REPVFRLGMATNVSATL 1209
LEL + SAPFL F GN++ P ++++ FV L P S R+P+F++ +TN+S T+
Sbjct: 387 LELETSPESAPFLTFTPGNVTFMPVMDIQAFVLDEDLWPKSAGRKPLFQIRASTNISITI 446
Query: 1210 TXHTSKITGFLKPG-KIQMELKESKVGIXHV 1299
++S+ITG L G ++++ELK S +G +V
Sbjct: 447 NVNSSRITGSLTTGSELKLELKHSNIGFFNV 477
>ref|NP_001192763.1| bactericidal/permeability-increasing protein-like 2 [Bos taurus].
Length = 508
Score = 131 bits (330), Expect = 1e-30
Identities = 88/393 (22%), Positives = 175/393 (44%), Gaps = 3/393 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGH--YEFHSLDIHS 291
PG+ AR T + L+Y + G+ ++ + LPD G ++++ + Y F ++ I++
Sbjct: 30 PGIKARATQRALDYAVQAGMEMIEQMAKERKLPDLKGSESLEFVKIDYVNYNFTNIKINA 89
Query: 292 CELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLG 471
++L+ +P G+ + + + W+V+ + + G+ D+ + G+ + ++L
Sbjct: 90 FSFPNTSLSFVPGVGIKALTNHGTTNISTDWEVKSPLFQDTGAADLFLSGVYFTGIVVLS 149
Query: 472 SESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
G P + + C + + + SG+LS L N F +E + L +C I V
Sbjct: 150 RNDFGHPILKLQDCYAQVSHADVSFSGELSVLYNSFAEPMEKPILKKLNEMLCPIITGEV 209
Query: 652 ASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAP 831
+ L L + V +IDN +DYSL+ +P T D+ +KG + L F +
Sbjct: 210 EA-LNANLSMLEVLRKIDNYTLLDYSLISSPEITENYFDLNLKGVFYPLKSLRYPPFPSV 268
Query: 832 VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
LPE M+Y +S+Y FK+AS Y AG +F++T + ++++ + + +
Sbjct: 269 PFVLPERRDSMLYIGISEYFFKSASYAYFTAGAFSFTLTTKEI--SNHLLHNSQAHGNML 326
Query: 1012 PRLARLY-PNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
R+A LY + ++ P ++ GN + + NS E + +
Sbjct: 327 SRIAELYILSKPFMVQVMATEPPVISLLPGNFTLDIPASIMILTQPENSTAETIVSMDFV 386
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKESKVG 1287
+ + L ++ L + ++ L ES G
Sbjct: 387 ASTNVALAILGQRLICSLSLNRFRLSLPESNRG 419
>ref|XP_002687717.1| PREDICTED: bactericidal/permeability-increasing protein-like 2
(predicted)-like [Bos taurus].
Length = 508
Score = 131 bits (330), Expect = 1e-30
Identities = 88/393 (22%), Positives = 175/393 (44%), Gaps = 3/393 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGH--YEFHSLDIHS 291
PG+ AR T + L+Y + G+ ++ + LPD G ++++ + Y F ++ I++
Sbjct: 30 PGIKARATQRALDYAVQAGMEMIEQMAKERKLPDLKGSESLEFVKIDYVNYNFTNIKINA 89
Query: 292 CELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLG 471
++L+ +P G+ + + + W+V+ + + G+ D+ + G+ + ++L
Sbjct: 90 FSFPNTSLSFVPGVGIKALTNHGTTNISTDWEVKSPLFQDTGAADLFLSGVYFTGIVVLS 149
Query: 472 SESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
G P + + C + + + SG+LS L N F +E + L +C I V
Sbjct: 150 RNDFGHPILKLQDCYAQVSHADVSFSGELSVLYNSFAEPMEKPILKKLNEMLCPIITGEV 209
Query: 652 ASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAP 831
+ L L + V +IDN +DYSL+ +P T D+ +KG + L F +
Sbjct: 210 EA-LNANLSMLEVLRKIDNYTLLDYSLISSPEITENYFDLNLKGVFYPLKSLRYPPFPSV 268
Query: 832 VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
LPE M+Y +S+Y FK+AS Y AG +F++T + ++++ + + +
Sbjct: 269 PFVLPERRDSMLYIGISEYFFKSASYAYFTAGAFSFTLTTKEI--SNHLLHNSQAHGNML 326
Query: 1012 PRLARLY-PNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
R+A LY + ++ P ++ GN + + NS E + +
Sbjct: 327 SRIAELYILSKPFMVQVMATEPPVISLLPGNFTLDIPASIMILTQPENSTAETIVSMDFV 386
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKESKVG 1287
+ + L ++ L + ++ L ES G
Sbjct: 387 ASTNVALAILGQRLICSLSLNRFRLSLPESNRG 419
>ref|NP_001030199.1| phospholipid transfer protein [Bos taurus].
Length = 510
Score = 122 bits (305), Expect = 1e-27
Identities = 88/298 (29%), Positives = 136/298 (45%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG RIT+K LE V +EG+ L+ +L VT+PD G G Y + + +
Sbjct: 34 PGCKIRITSKALELVKQEGLRFLEQELETVTIPDLRGS-----EGHFFYNISEVKVTELQ 88
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
L S L P Q L L I+++S ++ + ++ G + +G++I L L +
Sbjct: 89 LTFSELHFQPDQELVLQINNASWGLRFRRQLLYWFFYDGGYINASAEGVSIHTALQLSRD 148
Query: 478 SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVAS 657
+ GR V+ SC + + + G L + I S R L +IC +
Sbjct: 149 TIGRIKVSNVSCQASVSRMHAAFGGTLKKVYEFLSTFITSGMRFLLNQQICPVLYHAGTV 208
Query: 658 DLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPVM 837
L L TVPV + +D L GIDYSL++ P A+ LD+ +G + L + V
Sbjct: 209 LLNSLLDTVPVRSAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLTEANWSLSNRAVE 268
Query: 838 RLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
+E RMVY A S++ F +A Y AG L S+ D VP ++ L + F + V
Sbjct: 269 PQLQEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMVLRASYFGSIV 326
>ref|NP_001180123.1| bactericidal/permeability-increasing protein-like 1 [Bos taurus].
Length = 459
Score = 80.1 bits (196), Expect = 4e-15
Identities = 96/399 (24%), Positives = 169/399 (42%), Gaps = 9/399 (2%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG V R+ + L Y A G A LQ+ L +VT+P F + G ++ + I + +
Sbjct: 24 PGTVFRLNKEVLSYAAEAGKAPLQNAL-QVTVPLFLDE------SGGVFQPTRIQIRNVD 76
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
+ LT ++D IR+ I + D + + + + LL +
Sbjct: 77 VSHLQLT---------FVADFGIRLLAATNFTFKIFR-----DPEPLHLLLPIALLADTS 122
Query: 478 ----SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQD 645
S G P V++SSC S D + + L ++S L+SK+C I +
Sbjct: 123 VEQGSIGTPVVSISSCFSIFDKAIVFDGRNSTAPAML--APLQSHITAVLKSKLCLRISN 180
Query: 646 LVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFL 825
LV L +L T+ + + + + YS+++ P T + + I +F L +
Sbjct: 181 LV-QGLNVHLGTLIGLSPVGPESQVRYSMIDTPTITNDYISLDINAVLFLLGRPIVLPVD 239
Query: 826 APVMRLPEE---HSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNS 996
LP+ M +S +F + ++ +AG LN +T L +SN L T+
Sbjct: 240 TTPFVLPQHMGTKGAMATVGLSQDLFDSVIMLLQKAGALNLDVTAQL--NSSNNPLNTSV 297
Query: 997 FRTFVPRLARLYPN-MNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVF 1173
F+P +AR +P M L L+ + + P + F + N + Q VE NS + +F
Sbjct: 298 LGQFIPEVARQFPEPMPLLLKVRLGATPTVTFRTNNATLQLQPFVEVLAPTSNSAFQYLF 357
Query: 1174 RLGMATNVSATLTXHTSKITGFLKP-GKIQMELKESKVG 1287
L + N+S L+ ++ G G +Q+ + S +G
Sbjct: 358 SLNVVMNLSLQLSVSKVRLRGTTSVLGNVQLTVASSNLG 396
>ref|XP_002692339.1| PREDICTED: bactericidal/permeability-increasing protein-like 1 [Bos
taurus].
Length = 459
Score = 80.1 bits (196), Expect = 4e-15
Identities = 96/399 (24%), Positives = 169/399 (42%), Gaps = 9/399 (2%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG V R+ + L Y A G A LQ+ L +VT+P F + G ++ + I + +
Sbjct: 24 PGTVFRLNKEVLSYAAEAGKAPLQNAL-QVTVPLFLDE------SGGVFQPTRIQIRNVD 76
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
+ LT ++D IR+ I + D + + + + LL +
Sbjct: 77 VSHLQLT---------FVADFGIRLLAATNFTFKIFR-----DPEPLHLLLPIALLADTS 122
Query: 478 ----SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQD 645
S G P V++SSC S D + + L ++S L+SK+C I +
Sbjct: 123 VEQGSIGTPVVSISSCFSIFDKAIVFDGRNSTAPAML--APLQSHITAVLKSKLCLRISN 180
Query: 646 LVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFL 825
LV L +L T+ + + + + YS+++ P T + + I +F L +
Sbjct: 181 LV-QGLNVHLGTLIGLSPVGPESQVRYSMIDTPTITNDYISLDINAVLFLLGRPIVLPVD 239
Query: 826 APVMRLPEE---HSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNS 996
LP+ M +S +F + ++ +AG LN +T L +SN L T+
Sbjct: 240 TTPFVLPQHMGTKGAMATVGLSQDLFDSVIMLLQKAGALNLDVTAQL--NSSNNPLNTSV 297
Query: 997 FRTFVPRLARLYPN-MNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVF 1173
F+P +AR +P M L L+ + + P + F + N + Q VE NS + +F
Sbjct: 298 LGQFIPEVARQFPEPMPLLLKVRLGATPTVTFRTNNATLQLQPFVEVLAPTSNSAFQYLF 357
Query: 1174 RLGMATNVSATLTXHTSKITGFLKP-GKIQMELKESKVG 1287
L + N+S L+ ++ G G +Q+ + S +G
Sbjct: 358 SLNVVMNLSLQLSVSKVRLRGTTSVLGNVQLTVASSNLG 396
>ref|XP_002692341.1| PREDICTED: long palate lung and nasal epithelium protein 3-like [Bos
taurus].
Length = 472
Score = 57.4 bits (137), Expect = 3e-08
Identities = 60/286 (20%), Positives = 115/286 (40%), Gaps = 7/286 (2%)
Frame = +1
Query: 442 ITISVNLLLGSESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLF----HNQIESRFRR 609
+ +S + LG + G P + + CS+ + G +S L L +E +
Sbjct: 137 VNVSSRVALGVSARGTPILILKRCST--------LLGHISLLTGLLPAPLFGVVEQTLFK 188
Query: 610 TLESKICEEIQDLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEI 789
L +C + D V + L V + L ++++L P + Q +++ + +
Sbjct: 189 VLPELLCPVV-DSVLGVVNELLGAVLGLVPLGALGSVEFTLATLPLISNQYIELDVNPIV 247
Query: 790 FSLDHRSPVGFLAP--VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVP 963
S+ + F P +++P + V ++F T + +G L+ IT +LVP
Sbjct: 248 KSVAG-DVIDFPKPRNPVKVPPKEDHTSQVTVPLFLFNTVFGLLQTSGALDLDITSELVP 306
Query: 964 PTSNIRLTTNSFRTFVPR-LARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFV 1140
SN+ LTT VP L +L P L L + AP + + + + +
Sbjct: 307 --SNVPLTTTDLAALVPEALRKLPPGQQLLLSLRVKEAPTVTLQNHKATVSISATIHVLS 364
Query: 1141 LLPNSVREPVFRLGMATNVSATLTXHTSKITGFLKPGKIQMELKES 1278
P E +F+L ++A L +K+ L ++ ++L S
Sbjct: 365 YFPQGAHEALFQLNGVMTLNAQLAPSATKLHISLSLERLSVQLVSS 410
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,456,429
Number of extensions: 1626373
Number of successful extensions: 6384
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6361
Number of HSP's successfully gapped: 13
Length of query: 473
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,174,046
Effective search space: 5201874882
Effective search space used: 5201874882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007981
(1419 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542993.2| PREDICTED: similar to lipopolysaccharide-bindin... 587 e-167
Alignment gi|XP_534417.2| PREDICTED: similar to Bactericidal permeability... 362 e-100
Alignment gi|XP_865991.1| PREDICTED: similar to Bactericidal permeability... 362 e-100
Alignment gi|XP_531753.1| PREDICTED: similar to bactericidal/permeability... 137 3e-32
Alignment gi|XP_543027.2| PREDICTED: similar to Phospholipid transfer pro... 127 3e-29
Alignment gi|XP_542959.2| PREDICTED: similar to antimicrobial peptide RYA... 58 2e-08
>ref|XP_542993.2| PREDICTED: similar to lipopolysaccharide-binding protein precursor
[Canis familiaris].
Length = 406
Score = 587 bits (1512), Expect = e-167
Identities = 290/380 (76%), Positives = 325/380 (85%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPGLV RIT+KGLEYVA+EG+ LQ KL +TLPDF GDFKIK +GRGHY+FHSL +HSC
Sbjct: 27 NPGLVVRITDKGLEYVAKEGLVALQKKLLSITLPDFAGDFKIKPIGRGHYDFHSLSVHSC 86
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
EL GS LTPLPSQGL L ISDS IRV+G+WK RK +KL GSFDV+VKGITISVNL+LG
Sbjct: 87 ELRGSALTPLPSQGLSLTISDSFIRVQGEWKARKAFVKLQGSFDVQVKGITISVNLVLGR 146
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
E SGRPTVA SSCSSHI DVE +SGDL WL+NLFHNQIES+F R LESKICE +Q V
Sbjct: 147 EPSGRPTVAASSCSSHIQDVEVDISGDLGWLMNLFHNQIESKFCRVLESKICEMLQKSVT 206
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
SDLQPYLQT+PVTT+ID+ AGIDYSLVEAPR TAQMLDVM KGEIF+ DH SPV FLAPV
Sbjct: 207 SDLQPYLQTLPVTTQIDSFAGIDYSLVEAPRVTAQMLDVMFKGEIFNRDHYSPVTFLAPV 266
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 1014
M LPEEH+RMVYFA+SDYVF TASLVY+E G+LNF+ITDD+VPP SNIRLTT SFR VP
Sbjct: 267 MSLPEEHNRMVYFAISDYVFNTASLVYHETGYLNFTITDDMVPPGSNIRLTTKSFRPLVP 326
Query: 1015 RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 1194
+LARLYPNMNLEL+G M SAPFLNF GNLS P +E+E FVLLP+S REPVF+L +ATN
Sbjct: 327 KLARLYPNMNLELQGTMASAPFLNFSPGNLSLAPLMEIEAFVLLPSSSREPVFQLSVATN 386
Query: 1195 VSATLTXHTSKITGFLKPGK 1254
+SATLT +TSKITGFLKPGK
Sbjct: 387 ISATLTFNTSKITGFLKPGK 406
>ref|XP_534417.2| PREDICTED: similar to Bactericidal permeability-increasing protein
precursor (BPI) (CAP 57) isoform 1 [Canis familiaris].
Length = 485
Score = 362 bits (929), Expect = e-100
Identities = 179/393 (45%), Positives = 257/393 (65%), Gaps = 2/393 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG+VARIT KGL+Y ++GVA LQ +L K+ +P F+G FK+K++G+GHY F+S+ I
Sbjct: 30 NPGVVARITQKGLDYACQQGVAVLQKELEKIKIPTFSGSFKVKHLGKGHYSFYSMVIRGF 89
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
+L S + +P++GL L+I +++I++ GKWK RK +K G+FD+ V+ I+IS L +
Sbjct: 90 QLPSSQIKLVPNKGLDLSIRNANIKISGKWKARKNFIKTSGNFDLSVESISISAGLNMSF 149
Query: 475 E-SSGRPTVAVSSCSSHIDDVETHMSGD-LSWLLNLFHNQIESRFRRTLESKICEEIQDL 648
+ +SG T+ SSC+++ID V H+SG L WL+ LFH +IES R+T+ +KIC+ +
Sbjct: 150 DPTSGHLTIICSSCNNYIDSVRVHISGGRLGWLIQLFHKKIESSIRKTMNNKICQVVSSS 209
Query: 649 VASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLA 828
V+S LQ YL+T+PVT +ID +AGI YSLV P ATA LD +KGE FSL H F
Sbjct: 210 VSSRLQSYLKTLPVTYKIDRIAGISYSLVAPPTATADNLDGHLKGEFFSLAHPRSPPFTP 269
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P M LP +H MVY +SDY F TA LVY EAG LN +ITDD++P S RLTT+ T
Sbjct: 270 PAMALPPDHDHMVYLGISDYFFNTAGLVYQEAGALNMTITDDMIPKKSKFRLTTDFLGTL 329
Query: 1009 VPRLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
+P++A ++PNM ++ S P L L TP ++ + F +LPNS P+F LG++
Sbjct: 330 IPQVAEMFPNMTVQFNVWASSPPHLTMRPAGLIFTPTLDTQAFAVLPNSSLAPLFVLGLS 389
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKESKVG 1287
TN+S ++ ++ G L K+ +ELK S VG
Sbjct: 390 TNLSMEVSARPDRLVGQLSLDKLLLELKHSDVG 422
>ref|XP_865991.1| PREDICTED: similar to Bactericidal permeability-increasing protein
precursor (BPI) (CAP 57) isoform 3 [Canis familiaris].
Length = 485
Score = 362 bits (929), Expect = e-100
Identities = 179/393 (45%), Positives = 257/393 (65%), Gaps = 2/393 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG+VARIT KGL+Y ++GVA LQ +L K+ +P F+G FK+K++G+GHY F+S+ I
Sbjct: 30 NPGVVARITQKGLDYACQQGVAVLQKELEKIKIPTFSGSFKVKHLGKGHYSFYSMVIRGF 89
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
+L S + +P++GL L+I +++I++ GKWK RK +K G+FD+ V+ I+IS L +
Sbjct: 90 QLPSSQIKLVPNKGLDLSIRNANIKISGKWKARKNFIKTSGNFDLSVESISISAGLNMSF 149
Query: 475 E-SSGRPTVAVSSCSSHIDDVETHMSGD-LSWLLNLFHNQIESRFRRTLESKICEEIQDL 648
+ +SG T+ SSC+++ID V H+SG L WL+ LFH +IES R+T+ +KIC+ +
Sbjct: 150 DPTSGHLTIICSSCNNYIDSVRVHISGGRLGWLIQLFHKKIESSIRKTMNNKICQVVSSS 209
Query: 649 VASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLA 828
V+S LQ YL+T+PVT +ID +AGI YSLV P ATA LD +KGE FSL H F
Sbjct: 210 VSSRLQSYLKTLPVTYKIDRIAGISYSLVAPPTATADNLDGHLKGEFFSLAHPRSPPFTP 269
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P M LP +H MVY +SDY F TA LVY EAG LN +ITDD++P S RLTT+ T
Sbjct: 270 PAMALPPDHDHMVYLGISDYFFNTAGLVYQEAGALNMTITDDMIPKKSKFRLTTDFLGTL 329
Query: 1009 VPRLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
+P++A ++PNM ++ S P L L TP ++ + F +LPNS P+F LG++
Sbjct: 330 IPQVAEMFPNMTVQFNVWASSPPHLTMRPAGLIFTPTLDTQAFAVLPNSSLAPLFVLGLS 389
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKESKVG 1287
TN+S ++ ++ G L K+ +ELK S VG
Sbjct: 390 TNLSMEVSARPDRLVGQLSLDKLLLELKHSDVG 422
>ref|XP_531753.1| PREDICTED: similar to bactericidal/permeability-increasing
protein-like 2 [Canis familiaris].
Length = 507
Score = 137 bits (344), Expect = 3e-32
Identities = 88/390 (22%), Positives = 174/390 (44%), Gaps = 3/390 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGH--YEFHSLDIHS 291
PG+ AR+T + L+Y + G+ ++ + + +PD G ++++ + Y F ++ I+
Sbjct: 28 PGIKARVTQRALDYGIQAGMEMIEQMIKEKNIPDLKGSESLEFLKVDYVNYNFSNIKINV 87
Query: 292 CELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLG 471
++L +P G+ + + + W V+ + + G D+ + G+ + ++L
Sbjct: 88 FSFPNTSLAFVPGVGIKALTNHGTANISTNWDVKSPLFQDTGEADLFLSGVYFTGIIVLS 147
Query: 472 SESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
G P + + C + + SG+LS L N F +E + L +C I V
Sbjct: 148 QNDFGHPILKLQDCYAQVSHAHVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPIITSEV 207
Query: 652 ASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAP 831
+ L L + V T+IDN +DYSL+ +P T +++ +KG + LD+ + FL
Sbjct: 208 EA-LNANLSMLEVLTKIDNYTLLDYSLISSPEITENYIELNLKGVFYPLDNLTDPPFLPV 266
Query: 832 VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
LPE M+Y +S++ FK+AS Y AG F++T + ++++ + +
Sbjct: 267 PFALPERSDSMLYVGISEFFFKSASFAYFIAG--AFNVTLSMKEISNHLVQNSQGLGNML 324
Query: 1012 PRLARLY-PNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
R+A +Y + +R P ++ GN + + NS E + +
Sbjct: 325 SRIAEIYILSQPFMVRVMATEPPVISLLPGNFTLDIPASIVILTQPENSTAEAIVSMDFV 384
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKES 1278
+ S L ++ L + ++ L ES
Sbjct: 385 ASTSVGLVILGQRLVCSLSLNRFRLSLPES 414
>ref|XP_543027.2| PREDICTED: similar to Phospholipid transfer protein precursor (Lipid
transfer protein II) [Canis familiaris].
Length = 495
Score = 127 bits (318), Expect = 3e-29
Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 3/301 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG R+T+K L+ V +EG+ L+ +L +T+PD G G +Y + + +
Sbjct: 20 PGCKIRVTSKALDLVKQEGLRFLEQELETITIPDLRGR-----EGHFYYNISEVKVTELQ 74
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
L S L P Q L L IS++S+ ++ + ++ G + +G++I L L +
Sbjct: 75 LTSSELHFQPGQELVLQISNASLGLRFRRQLLYWFFYDGGYINASAEGVSIRTALELSGD 134
Query: 478 SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVAS 657
+GR V+ SC + + + G + I S R L +IC +
Sbjct: 135 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 194
Query: 658 DLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGFLA 828
L L TVPV + +D+L GIDYSL++ P A+ LD+ +G F L R+ P +
Sbjct: 195 LLNSLLDTVPVRSSVDDLVGIDYSLLKDPVASTSNLDMDFRGAFFPLAERNWSLPNRAVE 254
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P + +E RMVY A S++ F +A Y AG L S+ D VP ++ L F +
Sbjct: 255 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALQLSLVGDKVPHDLDMLLRATYFGSI 311
Query: 1009 V 1011
V
Sbjct: 312 V 312
>ref|XP_542959.2| PREDICTED: similar to antimicrobial peptide RYA3 [Canis familiaris].
Length = 479
Score = 58.2 bits (139), Expect = 2e-08
Identities = 75/347 (21%), Positives = 133/347 (38%), Gaps = 9/347 (2%)
Frame = +1
Query: 265 EFHSLDIHSCELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGI 444
E L I L +L LP G+ L++ + + + G + G+L+L +V
Sbjct: 88 ELSGLKIEELTLPKVSLKLLPGFGVQLSLH-TKVGLHGSGPLG-GLLQLAAEANV----- 140
Query: 445 TISVNLLLGSESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNL-FHNQIESRFRRTLES 621
S + LG S G P + + CS+ + + LS LL +E + L
Sbjct: 141 --SSRVALGVSSRGTPILVLKRCSTLLGHISL-----LSGLLPAPLFGVVEQTLFKVLPG 193
Query: 622 KICEEIQDLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIK------- 780
+C + D V + L T + L ++++L P + Q +++ I
Sbjct: 194 LLCPMV-DSVLGVVNELLGTALSLVPLGALGSVEFTLATLPLISNQYIELDINPIVKNIA 252
Query: 781 GEIFSLDHRSPVGFLAPVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLV 960
G++ +++P + V Y+F T + G L+ IT +LV
Sbjct: 253 GDVIDFPKPPKPPNPPKPIKVPPKEDHTSQVVVPLYLFNTVFGLLQTNGALDIDITPELV 312
Query: 961 PPTSNIRLTTNSFRTFVPR-LARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGF 1137
P SN+ LTT + VP L L P L L + AP + + + + +
Sbjct: 313 P--SNVPLTTTDLASLVPEALGNLPPGQQLLLSMRVKEAPSVTLQNKKATISIPANIHVL 370
Query: 1138 VLLPNSVREPVFRLGMATNVSATLTXHTSKITGFLKPGKIQMELKES 1278
P E +F L ++A L +K+ L ++ ++L S
Sbjct: 371 SYHPKGTNEALFELNAVLTLNAQLAPSATKLHLSLSLERLSVKLASS 417
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,972,742
Number of extensions: 1683015
Number of successful extensions: 6645
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6628
Number of HSP's successfully gapped: 6
Length of query: 473
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 366
Effective length of database: 15,307,552
Effective search space: 5602564032
Effective search space used: 5602564032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007981
(1419 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360027.1| PREDICTED: lipopolysaccharide-binding protei... 778 0.0
Alignment gi|NP_001121907.1| lipopolysaccharide-binding protein [Sus scro... 766 0.0
Alignment gi|NP_001152779.1| bactericidal permeability-increasing protein... 357 1e-98
Alignment gi|XP_003126122.1| PREDICTED: bactericidal/permeability-increas... 139 3e-33
Alignment gi|NP_999448.1| phospholipid transfer protein [Sus scrofa]. 121 1e-27
Alignment gi|NP_001094500.1| bactericidal/permeability-increasing protein... 86 5e-17
>ref|XP_003360027.1| PREDICTED: lipopolysaccharide-binding protein-like [Sus scrofa].
Length = 482
Score = 778 bits (2008), Expect = 0.0
Identities = 400/436 (91%), Positives = 406/436 (93%), Gaps = 1/436 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPGLVARITNKGLEYVAREGVATLQSKLH+VTLPDFNGDFKIKYMGRGHYEFHSLDIHSC
Sbjct: 28 NPGLVARITNKGLEYVAREGVATLQSKLHEVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 87
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
ELLGSTLTPLP QGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS
Sbjct: 88 ELLGSTLTPLPGQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 147
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA
Sbjct: 148 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 207
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV
Sbjct: 208 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 267
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 1014
MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP
Sbjct: 268 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 327
Query: 1015 RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 1194
RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN
Sbjct: 328 RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 387
Query: 1195 VSATLTXHTSKITGFLKPGKIQMELKESKVGIXHVXXXXXXXXXXXXHNSTPRXMDSWQK 1374
VSA LT +TSKITGFLKPGKIQMELKESKVGI +V +N P+ D +
Sbjct: 388 VSAALTFNTSKITGFLKPGKIQMELKESKVGIFNVELLEALLNYYLLNNLYPKVNDKLAE 447
Query: 1375 ASP-SSAXYIQLHDPV 1419
P YIQLHDPV
Sbjct: 448 GFPLPLLNYIQLHDPV 463
>ref|NP_001121907.1| lipopolysaccharide-binding protein [Sus scrofa].
Length = 481
Score = 766 bits (1977), Expect = 0.0
Identities = 395/436 (90%), Positives = 402/436 (92%), Gaps = 1/436 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPGLVARITNKGLEYVAREGVATLQSKLH+VTLPDFNGDFKIKYMGRGHYEFHSLDIHSC
Sbjct: 27 NPGLVARITNKGLEYVAREGVATLQSKLHEVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 86
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
ELLGSTLTPLP QGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS
Sbjct: 87 ELLGSTLTPLPGQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 146
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA
Sbjct: 147 GSSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 206
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV
Sbjct: 207 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 266
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 1014
MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP
Sbjct: 267 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 326
Query: 1015 RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 1194
RLARLYPNMNLEL GAMVS P LNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN
Sbjct: 327 RLARLYPNMNLELWGAMVSXPXLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 386
Query: 1195 VSATLTXHTSKITGFLKPGKIQMELKESKVGIXHVXXXXXXXXXXXXHNSTPRXMDSWQK 1374
VSA LT +TSKITGFLKPGKIQ+ELKESKVGI +V +N P+ D +
Sbjct: 387 VSAALTFNTSKITGFLKPGKIQVELKESKVGIFNVELLEALLNYYLLNNLYPKVNDKLAE 446
Query: 1375 ASP-SSAXYIQLHDPV 1419
P YIQLHDPV
Sbjct: 447 GFPLPLLNYIQLHDPV 462
>ref|NP_001152779.1| bactericidal permeability-increasing protein [Sus scrofa].
Length = 483
Score = 357 bits (915), Expect = 1e-98
Identities = 183/438 (41%), Positives = 269/438 (61%), Gaps = 3/438 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG+VARIT KGL+Y ++GVATL+ +L K+T+P F+G FKIKY G+G Y F+S+ +
Sbjct: 29 NPGIVARITQKGLDYACQQGVATLRKELEKITIPTFSGSFKIKYFGKGRYNFYSMVVREF 88
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
+L S + P QGL L+I D+S+++ GKWK +K +K G+FD+ V+ I++ +L LG
Sbjct: 89 KLPTSQIRLSPDQGLDLSIKDASVKISGKWKAQKNFIKASGNFDLSVERISVLASLRLGY 148
Query: 475 E-SSGRPTVAVSSCSSHIDDVETHMSGD-LSWLLNLFHNQIESRFRRTLESKICEEIQDL 648
+ +SG TV+ SSC SHI+ V SG L WL+ LFH IES R+ +ESKIC+ + +
Sbjct: 149 DPTSGHSTVSCSSCRSHINRVHVRTSGSSLKWLIQLFHRNIESALRKAMESKICKMLTNT 208
Query: 649 VASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLA 828
V+S LQPY QT+PVT ++D + GI+YSLV P+ATA+ LD ++KGE FSLDH SP F
Sbjct: 209 VSSKLQPYFQTLPVTAKVDRMVGINYSLVAPPKATAENLDGLLKGEFFSLDHPSPPPFAP 268
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P + LP +H RMVY +S+Y F TA LVY +AG LN +I + ++P S LTTN F T
Sbjct: 269 PALALPADHDRMVYLCISEYFFNTAGLVYQKAGVLNLTINNSMIPKKSLFSLTTNFFGTL 328
Query: 1009 VPRLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
+P+++ ++PNM ++ P L L T +E + F +LPN+ P+F + M
Sbjct: 329 IPKVSTMFPNMEMQFLIWASFPPHLTVHPSGLDLTFVLETQAFAVLPNASLAPLFLIEMN 388
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKESKVGIXHVXXXXXXXXXXXXHNSTPRXMDSW 1368
+++S + + ++ G L+ K+ +ELK S +G V P+ +
Sbjct: 389 SSISVDIGVRSKRLIGELRLNKLLLELKHSNIGPFSVELLQAVMNFAVPTLVLPKINEKL 448
Query: 1369 QKASP-SSAXYIQLHDPV 1419
Q+ P YIQL + V
Sbjct: 449 QRGFPLPLPAYIQLSNLV 466
>ref|XP_003126122.1| PREDICTED: bactericidal/permeability-increasing protein-like 2 [Sus
scrofa].
Length = 507
Score = 139 bits (351), Expect = 3e-33
Identities = 87/390 (22%), Positives = 176/390 (45%), Gaps = 3/390 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGH--YEFHSLDIHS 291
PG+ AR T + L+Y + G+ ++ + K +P+ NG ++++ + Y F ++ I++
Sbjct: 28 PGIKARATQRALDYGVQVGMEIIEQMVKKRDIPNLNGSESLEFLKVDYVNYNFTNIKINA 87
Query: 292 CELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLG 471
++L +P G+ + + + W+++ + + G D+ + + + N++L
Sbjct: 88 FSFPNTSLAFVPGVGIRALTNHGTANISTDWEIKSPLFRDTGGADLFLSEVYFTGNVILT 147
Query: 472 SESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
+ G P + + C + + + SG+LS L N F +E + L +C + V
Sbjct: 148 RNNFGHPILKLQDCHAQVSHADVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPMVTSEV 207
Query: 652 ASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAP 831
+ L L + V T+IDN +DYSL+ +P T +++ +KG + L + + F +
Sbjct: 208 EA-LNANLSMLEVITKIDNYTLLDYSLISSPDITENYIELYLKGVFYPLGNLTDPPFSSV 266
Query: 832 VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
LP+ M+Y +S+Y FK+AS Y AG N +++ + T ++ T+ +
Sbjct: 267 PFVLPDRSDSMLYIGISEYFFKSASYAYFTAGAFNITLSTKEI--TDHLIRTSQGLGNML 324
Query: 1012 PRLARLY-PNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
R+A LY + +R P +N GN + + NS E + +
Sbjct: 325 SRIAELYILSQPFMVRVMATEPPLINLLPGNFTLDIPASIMILTQSKNSTAETIVSMDFV 384
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKES 1278
+ L ++ L + ++ L ES
Sbjct: 385 ASTDVALVILGQRLICSLSLNRFRLSLPES 414
>ref|NP_999448.1| phospholipid transfer protein [Sus scrofa].
Length = 496
Score = 121 bits (303), Expect = 1e-27
Identities = 87/301 (28%), Positives = 137/301 (45%), Gaps = 3/301 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG RIT+K LE V +EG+ L+ +L +T+PD G G +Y + + +
Sbjct: 20 PGCKIRITSKALELVKQEGLRFLEQELETITIPDLRGR-----EGHFYYNISEVKVTELQ 74
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
L S L P Q L L I++ S+ ++ + ++ G + +G++I L L +
Sbjct: 75 LTSSELHFQPEQELMLQINNGSLGLRFRRQLLYWFFYDGGYINASAEGVSIHTALQLSRD 134
Query: 478 SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVAS 657
+GR V+ SC + + + G + I S R L +IC +
Sbjct: 135 PTGRIKVSNVSCQASVSRMHAAFGGTFKKVYEFLSTFITSGMRFLLNQQICPVLYHAGMV 194
Query: 658 DLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGFLA 828
L L TVPV +D L GIDYSL++ P A+ LD+ +G + L + P +
Sbjct: 195 LLNSLLDTVPVRGAVDELVGIDYSLLKDPVASTSNLDMEFRGAFYPLAEGNWSLPNRRVE 254
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P + +E RMVY A S++ F +A Y AG L S+ D VP ++ L F +
Sbjct: 255 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALKLSLVGDKVPHDLDMLLRATYFGSI 311
Query: 1009 V 1011
V
Sbjct: 312 V 312
>ref|NP_001094500.1| bactericidal/permeability-increasing protein-like 1 [Sus scrofa].
Length = 458
Score = 85.9 bits (211), Expect = 5e-17
Identities = 98/405 (24%), Positives = 168/405 (41%), Gaps = 15/405 (3%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG V R+ + L Y A G A LQ L +VT+P+F +
Sbjct: 23 PGTVVRLNKEVLSYAAEAGRAPLQRAL-QVTVPNF-----------------------LD 58
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
G L P Q L + + +++ + +R L +F +K+ + ++L+L E
Sbjct: 59 RSGEALQPTRIQILNVHLPHLHLKLIAGFGIR---LSAAANFTLKIFHVPEPLHLMLPME 115
Query: 478 ----------SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKI 627
S G P V++S C S D E + D + ++ + L+SK+
Sbjct: 116 LLVDAPVDQCSIGTPVVSISDCFSFFD--EAIVLDDRNRAAPALLVPLQKHIQAVLQSKL 173
Query: 628 CEEIQDLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHR 807
C + ++V S L +L T+ + + + + YS++ AP T + + + +F L
Sbjct: 174 CLRVSNVVQS-LNVHLGTLIGLSRVGPESQVRYSMINAPTITRDYISLDVNAILFLLGRP 232
Query: 808 SPVGFLAPVMRLPEE---HSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNI 978
+ + LP MV +S +F +A L+ +AG LN IT L NI
Sbjct: 233 IMLPEVNTSFVLPHHVGTRGAMVTVGLSQDLFDSALLLLQKAGVLNMDITGQL-KSDDNI 291
Query: 979 RLTTNSFRTFVPRLARLYPN-MNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNS 1155
L T+ +P +AR +P M L L+ + + P + + N + Q VE NS
Sbjct: 292 -LNTSVLGQLIPEVARQFPEPMALVLKVRLGAMPTVTLHTNNATLQLQPFVEVLAPASNS 350
Query: 1156 VREPVFRLGMATNVSATLTXHTSKITGFLKP-GKIQMELKESKVG 1287
+ +F L + N+S L ++ G G +Q+ + S VG
Sbjct: 351 AFQSLFSLNVVVNLSLQLFVSGVRLRGTTSVLGNVQITMASSNVG 395
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,470,621
Number of extensions: 1053291
Number of successful extensions: 4082
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4062
Number of HSP's successfully gapped: 6
Length of query: 473
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 370
Effective length of database: 8,779,541
Effective search space: 3248430170
Effective search space used: 3248430170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007981
(1419 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032515.2| lipopolysaccharide-binding protein precursor [M... 521 e-148
Alignment gi|NP_808518.1| bactericidal permeability-increasing protein [M... 307 1e-83
Alignment gi|NP_035255.1| phospholipid transfer protein precursor [Mus mu... 130 3e-30
Alignment gi|NP_808440.2| bactericidal/permeability-increasing protein-li... 127 3e-29
Alignment gi|NP_919338.2| long palate, lung and nasal epithelium carcinom... 54 4e-07
>ref|NP_032515.2| lipopolysaccharide-binding protein precursor [Mus musculus].
Length = 481
Score = 521 bits (1342), Expect = e-148
Identities = 263/434 (60%), Positives = 325/434 (74%), Gaps = 1/434 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG+VARIT+KGL Y A+EG+ LQ +L+K+TLPDF+GDFKIK +GRG YEFHSL+I +C
Sbjct: 27 NPGVVARITDKGLAYAAKEGLVALQRELYKITLPDFSGDFKIKAVGRGQYEFHSLEIQNC 86
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
EL GS+L LP QGL LAISDSSI V+GKWKVRK LKL GSFD+ VKG+TISV+LLLG
Sbjct: 87 ELRGSSLKLLPGQGLSLAISDSSIGVRGKWKVRKSFLKLHGSFDLDVKGVTISVDLLLGM 146
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
+ SGRPTV+ S CSS I D++ H+SG++ WLLNLFHNQIES+ ++ LE+K+CE IQ V
Sbjct: 147 DPSGRPTVSASGCSSRICDLDVHISGNVGWLLNLFHNQIESKLQKVLENKVCEMIQKSVT 206
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
SDLQPYLQT+PVT EIDN+ GIDYSLV AP+A AQ+LDVM KGEIF+ +HRSPV P
Sbjct: 207 SDLQPYLQTLPVTAEIDNVLGIDYSLVAAPQAKAQVLDVMFKGEIFNRNHRSPVATPTPT 266
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 1014
M LPE+ +MVYFA+SDY F AS VY++AG+LNFSITDD++P S IRL T +FR F P
Sbjct: 267 MSLPEDSKQMVYFAISDYAFNIASRVYHQAGYLNFSITDDMLPHDSGIRLNTKAFRPFTP 326
Query: 1015 RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 1194
++ + YP+M LEL G +VSAP LN GNLS PQ+E+EGFV+LP S REPVFRLG+ TN
Sbjct: 327 QIYKKYPDMKLELLGTVVSAPILNVSPGNLSLAPQMEIEGFVILPTSAREPVFRLGVVTN 386
Query: 1195 VSATLTXHTSKITGFLKPGKIQMELKESKVGIXHVXXXXXXXXXXXXHNSTPRXMDSWQK 1374
V A+LT + SK+TG L P K Q+ L ESKVG+ +V ++ P +
Sbjct: 387 VFASLTFNNSKVTGMLHPDKAQVRLIESKVGMFNVNLFQAFLNYYLLNSLYPDVNAELAQ 446
Query: 1375 ASP-SSAXYIQLHD 1413
P +IQLHD
Sbjct: 447 GFPLPLPRHIQLHD 460
>ref|NP_808518.1| bactericidal permeability-increasing protein [Mus musculus].
Length = 486
Score = 307 bits (787), Expect = 1e-83
Identities = 159/399 (39%), Positives = 247/399 (61%), Gaps = 8/399 (2%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
+PG VA I+ KGL++ ++GV LQ +L +++PDF+G FKIK++G+G YEF+S+ +
Sbjct: 29 DPGFVAMISQKGLDFACQQGVVELQKELQAISVPDFSGVFKIKHLGKGSYEFYSMAVDGF 88
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
+ + LPS GL + I D+SI++ GKW RK LK G+F++ ++G++IS +L+LGS
Sbjct: 89 HIPNPKIEMLPSDGLRVFIKDASIKINGKWMSRKNFLKAGGNFELSIQGVSISTDLILGS 148
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGD-LSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
+SSG T S+C SHID V +SG L WL+ LFH +IE+ + + KIC+ ++D V
Sbjct: 149 DSSGHITTICSNCDSHIDSVHIKISGSMLGWLIRLFHRKIETSLKNIIYKKICKIVRDSV 208
Query: 652 ASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAP 831
+S LQPYL+T+ V T +D++ +DYSL+ T Q L+ +KGE F HR P+ P
Sbjct: 209 SSKLQPYLKTLSVITRVDDVTSVDYSLLAPLTTTNQFLEGQLKGEFFWRGHRDPLPIHPP 268
Query: 832 VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
VMR + MV +SDY F T L Y ++G L ++ L+ +L T+ RTF+
Sbjct: 269 VMRFVPNGAYMVCMGISDYFFNTEVLAYQQSGTLKMTLGGQLLSNNGRFQLNTDFLRTFL 328
Query: 1012 PRLARLYPNMNLELRGAMVSAP---FLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLG 1182
P++A+++P+M ++L ++SAP L+ LS P++E + FV+LPN+ P+F LG
Sbjct: 329 PKVAKMFPSMGVQL---LISAPVPVHLSIQPSGLSFNPKLETQAFVVLPNASLVPLFVLG 385
Query: 1183 MA---TNVSATLTXHTSKITGFLKPG-KIQMELKESKVG 1287
M TN S + +++ G +K G + +ELKESK G
Sbjct: 386 MVRRKTNASLEVDAEENRLVGEMKLGSRWLLELKESKFG 424
>ref|NP_035255.1| phospholipid transfer protein precursor [Mus musculus].
Length = 493
Score = 130 bits (326), Expect = 3e-30
Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 5/325 (1%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG R+T+ L+ V +EG+ L+ +L +T+PD G +GH+ ++ D+ +
Sbjct: 20 PGCKIRVTSAALDLVKQEGLRFLEQELETITIPDVYG-------AKGHFYYNISDVRVTQ 72
Query: 298 L--LGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLG 471
L + S L P Q L L IS++S+ + + ++ L G + +G++I L L
Sbjct: 73 LHLISSELHFQPDQDLLLNISNASLGLHFRRQLLYWFLYDGGYINASAEGVSIRTGLQLS 132
Query: 472 SESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
+SSGR V+ SC + + + G + N F I S R L +IC +
Sbjct: 133 QDSSGRIKVSNVSCEASVSKMNMAFGGTFRRMYNFFSTFITSGMRFLLNQQICPVLYHAG 192
Query: 652 ASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGF 822
L L TVPV + +D+L GIDYSL++ P + LD+ +G F L + P
Sbjct: 193 TVLLNSLLDTVPVRSSVDDLVGIDYSLLKDPVVSNGNLDMEFRGAFFPLKEDNWSLPNRA 252
Query: 823 LAPVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFR 1002
+ P + E+ RMVY A S++ F +A Y +AG L ++ D VP ++ L F
Sbjct: 253 VEPQL---EDDERMVYVAFSEFFFDSAMESYFQAGALQLTLVGDKVPSDLDMLLRATYFG 309
Query: 1003 TFVPRLARLYPNMNLELRGAMVSAP 1077
+ V L+ N L+L+ S P
Sbjct: 310 SIV-LLSPTVINSPLKLKLEATSPP 333
>ref|NP_808440.2| bactericidal/permeability-increasing protein-like 2 [Mus musculus].
Length = 507
Score = 127 bits (318), Expect = 3e-29
Identities = 87/393 (22%), Positives = 167/393 (42%), Gaps = 6/393 (1%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGH--YEFHSLDIHS 291
PG+ ARIT + L+Y + G+ L+ ++ +PD NG +K++ + Y F ++ I++
Sbjct: 28 PGITARITQRALDYGLQVGMKVLEQLAKEIVIPDLNGSESLKFLKIDYVKYNFSNIKINA 87
Query: 292 CELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLG 471
++L +P G+ + + + W V+ + + G+ ++ + GI + +
Sbjct: 88 FSFPNTSLAFVPGVGIRALSNHGTANISTNWSVKAPLFRDSGAANLFLSGIYFTGIVAFT 147
Query: 472 SESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
G P + + C + G LS L N F +E + L +C +
Sbjct: 148 RNDFGYPALELQDCHVQVSHARVSFFGSLSALYNSFAEPMEKPILKNLNEMLCP----IA 203
Query: 652 ASDLQPY---LQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGF 822
S ++ + + + V T+IDN +D SL+ P T LD +KG + L+ F
Sbjct: 204 ISQVEQFNVNISALEVLTKIDNYTVLDCSLISPPEITENHLDFNLKGAFYPLESLVDPPF 263
Query: 823 LAPVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFR 1002
LPE M+Y +S+Y FK+AS + +G L +++ + ++ F
Sbjct: 264 TPAPFHLPESRDSMLYIGISEYFFKSASFAHYVSGALGTTLSTREI--SNYFSQNVQGFG 321
Query: 1003 TFVPRLARLYP-NMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRL 1179
+ + ++A +Y + L+ P +N N S V L NS +P+ +
Sbjct: 322 SVLSKIAEIYVLSQPFILQMMATGPPMVNLQRNNFSLEFPAAVIMLTQLDNSTIQPIVSM 381
Query: 1180 GMATNVSATLTXHTSKITGFLKPGKIQMELKES 1278
+ S L K+ L + ++ L E+
Sbjct: 382 DFVASTSVGLAILGQKLICSLSLNRFRLSLPEN 414
>ref|NP_919338.2| long palate, lung and nasal epithelium carcinoma-associated protein 3
precursor [Mus musculus].
Length = 473
Score = 53.5 bits (127), Expect = 4e-07
Identities = 70/341 (20%), Positives = 137/341 (40%), Gaps = 3/341 (0%)
Frame = +1
Query: 265 EFHSLDIHSCELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGI 444
E L I L +L LP G+ L + + + + G + G+L+L +
Sbjct: 88 ELSGLKIEELTLPKVSLKLLPGVGVQLNLH-TKVSLHGSGPL-VGLLQLAAE-------V 138
Query: 445 TISVNLLLGSESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESK 624
+S + LG G P + + CS+ + + MSG L + +E + L
Sbjct: 139 NVSSKVALGMSPRGTPILVLKRCSTLLGHISL-MSGLLPTPI---FGLVEQTLCKVLPGL 194
Query: 625 ICEEIQDLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDH 804
+C + D V S + L + L ++++L P + Q +++ I + S+
Sbjct: 195 LCPVV-DSVLSVVNELLGATLSLVPLGPLGSVEFTLATLPLISNQYIELDINPIVKSIAG 253
Query: 805 RSPVGFLAP--VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNI 978
+ F P +++P + V Y+F T + G L+ IT ++VP N+
Sbjct: 254 -DVIDFPKPRIPVKVPPKEDHTSQVTVPLYLFSTVFGLLQTNGALDLDITPEMVP--RNV 310
Query: 979 RLTTNSFRTFVPR-LARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNS 1155
LTT P L +L P +L L + +P + + + + + + +P
Sbjct: 311 PLTTTDLAALAPEALGKLPPAQHLLLSLRVTKSPMVLLQNKKATVSIPVTIHVLSSVPQG 370
Query: 1156 VREPVFRLGMATNVSATLTXHTSKITGFLKPGKIQMELKES 1278
+F+L ++A L ++K+ L ++ ++L S
Sbjct: 371 TPVALFQLNGVMTLNAHLAPSSTKLHISLSLERLSVQLASS 411
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,670,702
Number of extensions: 1363525
Number of successful extensions: 5106
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5090
Number of HSP's successfully gapped: 5
Length of query: 473
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 368
Effective length of database: 12,463,779
Effective search space: 4586670672
Effective search space used: 4586670672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007981
(1419 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004130.2| lipopolysaccharide-binding protein precursor [H... 589 e-168
Alignment gi|NP_001716.2| bactericidal permeability-increasing protein pr... 371 e-102
Alignment gi|NP_777592.1| bactericidal/permeability-increasing protein-li... 139 5e-33
Alignment gi|NP_006218.1| phospholipid transfer protein isoform a precurs... 127 3e-29
Alignment gi|NP_872617.1| phospholipid transfer protein isoform b precurs... 93 5e-19
Alignment gi|NP_001229850.1| phospholipid transfer protein isoform d [Hom... 89 8e-18
Alignment gi|NP_000069.2| cholesteryl ester transfer protein precursor [H... 88 2e-17
Alignment gi|NP_001229849.1| phospholipid transfer protein isoform c prec... 71 2e-12
>ref|NP_004130.2| lipopolysaccharide-binding protein precursor [Homo sapiens].
Length = 481
Score = 589 bits (1518), Expect = e-168
Identities = 298/434 (68%), Positives = 350/434 (80%), Gaps = 1/434 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPGLVARIT+KGL+Y A+EG+ LQS+L ++TLPDF GD +I ++GRG YEFHSL+IHSC
Sbjct: 27 NPGLVARITDKGLQYAAQEGLLALQSELLRITLPDFTGDLRIPHVGRGRYEFHSLNIHSC 86
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
ELL S L P+P QGL L+ISDSSIRV+G+WKVRK KL GSFDV VKGI+ISVNLLLGS
Sbjct: 87 ELLHSALRPVPGQGLSLSISDSSIRVQGRWKVRKSFFKLQGSFDVSVKGISISVNLLLGS 146
Query: 475 ESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVA 654
ESSGRPTV SSCSS I DVE MSGDL WLLNLFHNQIES+F++ LES+ICE IQ V+
Sbjct: 147 ESSGRPTVTASSCSSDIADVEVDMSGDLGWLLNLFHNQIESKFQKVLESRICEMIQKSVS 206
Query: 655 SDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPV 834
SDLQPYLQT+PVTTEID+ A IDYSLVEAPRATAQML+VM KGEIF +HRSPV LA V
Sbjct: 207 SDLQPYLQTLPVTTEIDSFADIDYSLVEAPRATAQMLEVMFKGEIFHRNHRSPVTLLAAV 266
Query: 835 MRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVP 1014
M LPEEH++MVYFA+SDYVF TASLVY+E G+LNFSITDD++PP SNIRLTT SFR FVP
Sbjct: 267 MSLPEEHNKMVYFAISDYVFNTASLVYHEEGYLNFSITDDMIPPDSNIRLTTKSFRPFVP 326
Query: 1015 RLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATN 1194
RLARLYPNMNLEL+G++ SAP LNF GNLS P +E++ FVLLP+S +EPVFRL +ATN
Sbjct: 327 RLARLYPNMNLELQGSVPSAPLLNFSPGNLSVDPYMEIDAFVLLPSSSKEPVFRLSVATN 386
Query: 1195 VSATLTXHTSKITGFLKPGKIQMELKESKVGIXHVXXXXXXXXXXXXHNSTPRXMDSWQK 1374
VSATLT +TSKITGFLKPGK+++ELKESKVG+ + + P+ D +
Sbjct: 387 VSATLTFNTSKITGFLKPGKVKVELKESKVGLFNAELLEALLNYYILNTFYPKFNDKLAE 446
Query: 1375 ASP-SSAXYIQLHD 1413
P +QL+D
Sbjct: 447 GFPLPLLKRVQLYD 460
>ref|NP_001716.2| bactericidal permeability-increasing protein precursor [Homo
sapiens].
Length = 487
Score = 371 bits (952), Expect = e-102
Identities = 182/438 (41%), Positives = 282/438 (64%), Gaps = 3/438 (0%)
Frame = +1
Query: 115 NPGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSC 294
NPG+V RI+ KGL+Y +++G A LQ +L ++ +PD++ FKIK++G+GHY F+S+DI
Sbjct: 33 NPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREF 92
Query: 295 ELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGS 474
+L S ++ +P+ GL +IS+++I++ GKWK +K LK+ G+FD+ ++G++IS +L LGS
Sbjct: 93 QLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLGS 152
Query: 475 E-SSGRPTVAVSSCSSHIDDVETHMS-GDLSWLLNLFHNQIESRFRRTLESKICEEIQDL 648
+SG+PT+ SSCSSHI+ V H+S + WL+ LFH +IES R + S++CE++ +
Sbjct: 153 NPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNS 212
Query: 649 VASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLA 828
V+S+LQPY QT+PV T+ID++AGI+Y LV P TA+ LDV +KGE +S +H +P F
Sbjct: 213 VSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFAP 272
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
PVM P H RMVY +SDY F TA LVY EAG L ++ DD++P S RLTT F TF
Sbjct: 273 PVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTF 332
Query: 1009 VPRLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
+P +A+ +PNM +++ + + P L+ L+ P ++V+ F +LPNS +F +GM
Sbjct: 333 LPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSSLASLFLIGMH 392
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKESKVGIXHVXXXXXXXXXXXXHNSTPRXMDSW 1368
T S ++ ++++ G LK ++ +ELK S +G V PR +
Sbjct: 393 TTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKL 452
Query: 1369 QKASP-SSAXYIQLHDPV 1419
QK P + +QL++ V
Sbjct: 453 QKGFPLPTPARVQLYNVV 470
>ref|NP_777592.1| bactericidal/permeability-increasing protein-like 2 precursor [Homo
sapiens].
Length = 507
Score = 139 bits (351), Expect = 5e-33
Identities = 91/390 (23%), Positives = 175/390 (44%), Gaps = 3/390 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGH--YEFHSLDIHS 291
PG+ ARIT + L+Y + G+ ++ L + LPD +G ++++ + Y F ++ I +
Sbjct: 28 PGIKARITQRALDYGVQAGMKMIEQMLKEKKLPDLSGSESLEFLKVDYVNYNFSNIKISA 87
Query: 292 CELLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLG 471
++L +P G+ + + + W + + G D+ + G+ + ++L
Sbjct: 88 FSFPNTSLAFVPGVGIKALTNHGTANISTDWGFESPLFQDTGGADLFLSGVYFTGIIILT 147
Query: 472 SESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLV 651
G PT+ + C + + SG+LS L N F +E + L +C I V
Sbjct: 148 RNDFGHPTLKLQDCYAQLSHAHVSFSGELSVLYNSFAEPMEKPILKNLNEMLCPIIASEV 207
Query: 652 ASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAP 831
+ L L T+ V T+IDN +DYSL+ +P T LD+ +KG + L++ + F
Sbjct: 208 KA-LNANLSTLEVLTKIDNYTLLDYSLISSPEITENYLDLNLKGVFYPLENLTDPPFSPV 266
Query: 832 VMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
LPE + M+Y +++Y FK+AS + AG N +++ + + +++ + +
Sbjct: 267 PFVLPERSNSMLYIGIAEYFFKSASFAHFTAGVFNVTLSTEEI--SNHFVQNSQGLGNVL 324
Query: 1012 PRLARLY-PNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMA 1188
R+A +Y + +R P +N GN + + NS E + +
Sbjct: 325 SRIAEIYILSQPFMVRIMATEPPIINLQPGNFTLDIPASIMMLTQPKNSTVETIVSMDFV 384
Query: 1189 TNVSATLTXHTSKITGFLKPGKIQMELKES 1278
+ S L ++ L + ++ L ES
Sbjct: 385 ASTSVGLVILGQRLVCSLSLNRFRLALPES 414
>ref|NP_006218.1| phospholipid transfer protein isoform a precursor [Homo sapiens].
Length = 493
Score = 127 bits (318), Expect = 3e-29
Identities = 87/301 (28%), Positives = 140/301 (46%), Gaps = 3/301 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG R+T+K LE V +EG+ L+ +L +T+PD G G +Y + + +
Sbjct: 20 PGCKIRVTSKALELVKQEGLRFLEQELETITIPDLRGK-----EGHFYYNISEVKVTELQ 74
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
L S L P Q L L I+++S+ ++ + ++ G + +G++I L L +
Sbjct: 75 LTSSELDFQPQQELMLQITNASLGLRFRRQLLYWFFYDGGYINASAEGVSIRTGLELSRD 134
Query: 478 SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVAS 657
+GR V+ SC + + + G + + I S R L +IC +
Sbjct: 135 PAGRMKVSNVSCQASVSRMHAAFGGTFKKVYDFLSTFITSGMRFLLNQQICPVLYHAGTV 194
Query: 658 DLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGFLA 828
L L TVPV + +D L GIDYSL++ P A+ LD+ +G F L R+ P +
Sbjct: 195 LLNSLLDTVPVRSSVDELVGIDYSLMKDPVASTSNLDMDFRGAFFPLTERNWSLPNRAVE 254
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P + +E RMVY A S++ F +A Y AG L + D VP ++ L F +
Sbjct: 255 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALQLLLVGDKVPHDLDMLLRATYFGSI 311
Query: 1009 V 1011
V
Sbjct: 312 V 312
>ref|NP_872617.1| phospholipid transfer protein isoform b precursor [Homo sapiens].
Length = 441
Score = 93.2 bits (230), Expect = 5e-19
Identities = 79/301 (26%), Positives = 126/301 (41%), Gaps = 3/301 (0%)
Frame = +1
Query: 118 PGLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCE 297
PG R+T+K LE V +EG+ L+ +L +T+PD G G +Y + + +
Sbjct: 20 PGCKIRVTSKALELVKQEGLRFLEQELETITIPDLRGK-----EGHFYYNISEVKVTELQ 74
Query: 298 LLGSTLTPLPSQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSE 477
L S L P Q L L I+++S+ ++ + ++ LK+
Sbjct: 75 LTSSELDFQPQQELMLQITNASLGLRFRRQLLYWFLKV---------------------- 112
Query: 478 SSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVAS 657
D + T ++ + +LLN +IC +
Sbjct: 113 ---------------YDFLSTFITSGMRFLLN---------------QQICPVLYHAGTV 142
Query: 658 DLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGFLA 828
L L TVPV + +D L GIDYSL++ P A+ LD+ +G F L R+ P +
Sbjct: 143 LLNSLLDTVPVRSSVDELVGIDYSLMKDPVASTSNLDMDFRGAFFPLTERNWSLPNRAVE 202
Query: 829 PVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTF 1008
P + +E RMVY A S++ F +A Y AG L + D VP ++ L F +
Sbjct: 203 PQL---QEEERMVYVAFSEFFFDSAMESYFRAGALQLLLVGDKVPHDLDMLLRATYFGSI 259
Query: 1009 V 1011
V
Sbjct: 260 V 260
>ref|NP_001229850.1| phospholipid transfer protein isoform d [Homo sapiens].
Length = 405
Score = 89.4 bits (220), Expect = 8e-18
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 3/226 (1%)
Frame = +1
Query: 343 LAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSESSGRPTVAVSSCSSH 522
L I+++S+ ++ + ++ G + +G++I L L + +GR V+ SC +
Sbjct: 2 LQITNASLGLRFRRQLLYWFFYDGGYINASAEGVSIRTGLELSRDPAGRMKVSNVSCQAS 61
Query: 523 IDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVASDLQPYLQTVPVTTEI 702
+ + G + + I S R L +IC + L L TVPV + +
Sbjct: 62 VSRMHAAFGGTFKKVYDFLSTFITSGMRFLLNQQICPVLYHAGTVLLNSLLDTVPVRSSV 121
Query: 703 DNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRS---PVGFLAPVMRLPEEHSRMVYF 873
D L GIDYSL++ P A+ LD+ +G F L R+ P + P + +E RMVY
Sbjct: 122 DELVGIDYSLMKDPVASTSNLDMDFRGAFFPLTERNWSLPNRAVEPQL---QEEERMVYV 178
Query: 874 AVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFV 1011
A S++ F +A Y AG L + D VP ++ L F + V
Sbjct: 179 AFSEFFFDSAMESYFRAGALQLLLVGDKVPHDLDMLLRATYFGSIV 224
>ref|NP_000069.2| cholesteryl ester transfer protein precursor [Homo sapiens].
Length = 493
Score = 87.8 bits (216), Expect = 2e-17
Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 8/286 (2%)
Frame = +1
Query: 121 GLVARITNKGLEYVAREGVATLQSKLHKVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCEL 300
G+V RIT L + E +Q+ + + PD G+ + +G+ Y H++ I +
Sbjct: 27 GIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSI 86
Query: 301 LGSTLTPLPSQGLYLAISDSSIRVKGKWK---VRKGILKLDGSFDVKV-KGITISVNLLL 468
S + + ++ + ++I + S+ KG K L +D S D ++ I + +N L
Sbjct: 87 ASSQVELVEAKSIDVSIQNVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQL 146
Query: 469 GSESSGRPTVAVSSCSSHIDDVETHMSGDL--SWLLNLFHNQIESRFRRTLESKICEEIQ 642
+ SGR C + H+ G+ W+ LF N I + L+ +IC+EI
Sbjct: 147 TCD-SGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEI- 204
Query: 643 DLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIF--SLDHRSPV 816
+++++ + ++QT + D G+D SL P TA L+ KG ++ P+
Sbjct: 205 NVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKNVSEDLPL 264
Query: 817 GFLAPVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDD 954
+P + SRM+YF S+ VF + + V + G L S+ D
Sbjct: 265 PTFSPTLL---GDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGD 307
>ref|NP_001229849.1| phospholipid transfer protein isoform c precursor [Homo sapiens].
Length = 398
Score = 71.2 bits (173), Expect = 2e-12
Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Frame = +1
Query: 589 IESRFRRTLESKICEEIQDLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLD 768
I S R L +IC + L L TVPV + +D L GIDYSL++ P A+ LD
Sbjct: 77 ITSGMRFLLNQQICPVLYHAGTVLLNSLLDTVPVRSSVDELVGIDYSLMKDPVASTSNLD 136
Query: 769 VMIKGEIFSLDHRS---PVGFLAPVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNF 939
+ +G F L R+ P + P + +E RMVY A S++ F +A Y AG L
Sbjct: 137 MDFRGAFFPLTERNWSLPNRAVEPQL---QEEERMVYVAFSEFFFDSAMESYFRAGALQL 193
Query: 940 SITDDLVPPTSNIRLTTNSFRTFV 1011
+ D VP ++ L F + V
Sbjct: 194 LLVGDKVPHDLDMLLRATYFGSIV 217
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,762,035
Number of extensions: 1643433
Number of successful extensions: 6121
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6090
Number of HSP's successfully gapped: 9
Length of query: 473
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 367
Effective length of database: 14,802,980
Effective search space: 5432693660
Effective search space used: 5432693660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007981
(1419 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 351 7e-94
>Sscrofa_Chr17
|| Length = 69701581
Score = 351 bits (177), Expect = 7e-94
Identities = 180/181 (99%)
Strand = Plus / Plus
Query: 779 agggtgaaatttttagccttgatcaccgctccccagttggcttccttgctcctgtcatga 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46855300 agggtgaaatttttagccttgatcaccgctccccagttggcttccttgctcctgtcatga 46855359
Query: 839 gacttcctgaggaacacagccgaatggtctactttgccgtctctgattatgtcttcaaaa 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46855360 gacttcctgaggaacacagccgaatggtctactttgccgtctctgattatgtcttcaaaa 46855419
Query: 899 ctgccagtctggtttataacgaagcagggttcttgaacttttccatcacagatgatttgg 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 46855420 ctgccagtctggtttataacgaagcagggttcttgaacttttccatcacagatgacttgg 46855479
Query: 959 t 959
|
Sbjct: 46855480 t 46855480
Score = 337 bits (170), Expect = 1e-89
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1017 gttagccagactgtaccccaacatgaacttggagctccggggagcaatggtctcagcccc 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46859058 gttagccagactgtaccccaacatgaacttggagctccggggagcaatggtctcagcccc 46859117
Query: 1077 gttcctgaacttcggctccgggaatctatcctcaaccccccagatagaggtcgagggctt 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46859118 gttcctgaacttcggctccgggaatctatcctcaaccccccagatagaggtcgagggctt 46859177
Query: 1137 tgtgctcttgcccaactccgtcagggagcctgtcttccggcttggtatgg 1186
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46859178 tgtgctcttgcccaactccgtcagggagcctgtcttccggcttggtatgg 46859227
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 tgcatcggacctgacccagctctctgggaatccatgatgggggcctcggctggggccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46838043 tgcatcggacctgacccagctctctgggaatccatgatgggggcctcggctggggccctg 46838102
Query: 61 ccctccctactgctgggaattctgctcacgtccatcctggggagcctgggggccaacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46838103 ccctccctactgctgggaattctgctcacgtccatcctggggagcctgggggccaacccc 46838162
Query: 121 ggcctggttgccaggatcaccaacaagggcttggagtacg 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 46838163 ggcctggttgccaggatcaccaacaagggcttggagtacg 46838202
Score = 301 bits (152), Expect = 5e-79
Identities = 155/156 (99%)
Strand = Plus / Plus
Query: 405 gaaactagacggctcctttgacgtgaaggttaaaggcatcaccatttcagtcaatcttct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46845412 gaaactagacggctcctttgacgtgaaggttaaaggcatcaccatttcagtcaatcttct 46845471
Query: 465 cctgggcagtgagtcctccgggaggccaacggtcgccgtctccagctgcagcagccacat 524
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46845472 cctgggaagtgagtcctccgggaggccaacggtcgccgtctccagctgcagcagccacat 46845531
Query: 525 cgacgacgtggagacacacatgtcgggagatctgag 560
||||||||||||||||||||||||||||||||||||
Sbjct: 46845532 cgacgacgtggagacacacatgtcgggagatctgag 46845567
Score = 256 bits (129), Expect = 3e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 273 cagcctggacatccacagctgtgagctgctcggctccactctgacgcctctccccagcca 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 46842604 cagcctggacatccacagctgtgagctgctcggctccactctgacgcctctccccggcca 46842663
Query: 333 gggcctgtatttggccatctccgactcctccatcagggtcaagggcaagtggaaagtgcg 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46842664 gggcctgtatttggccatctccgactcctccatcagggtcaagggcaagtggaaagtgcg 46842723
Query: 393 caaggggatactg 405
|||||||||||||
Sbjct: 46842724 caaggggatactg 46842736
Score = 214 bits (108), Expect = 1e-52
Identities = 114/116 (98%)
Strand = Plus / Plus
Query: 160 gtggccagagagggggtggcgactctgcagagtaagctgcacaaagtcacactccccgac 219
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 46841210 gtggccagagagggggtggcgactctgcagagtaaactgcacgaagtcacactccccgac 46841269
Query: 220 ttcaatggggacttcaagatcaaatacatgggccgagggcactatgagttccacag 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46841270 ttcaatggggacttcaagatcaaatacatgggccgagggcactatgagttccacag 46841325
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 686 cagtcacgacagagattgacaaccttgctggcattgattacagtttagtggaggcccctc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46854415 cagtcacgacagagattgacaaccttgctggcattgattacagtttagtggaggcccctc 46854474
Query: 746 gggcaacagcccaaatgctggatgtgatgattaagg 781
||||||||||||||||||||||||||||||||||||
Sbjct: 46854475 gggcaacagcccaaatgctggatgtgatgattaagg 46854510
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 559 agctggctgctgaatctcttccacaaccagatcgagtccaggttccgaagaacattggag 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46846794 agctggctgctgaatctcttccacaaccagatcgagtccaggttccgaagaacattggag 46846853
Query: 619 agcaag 624
||||||
Sbjct: 46846854 agcaag 46846859
Score = 123 bits (62), Expect = 3e-25
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 623 agatttgtgaagagatccaggatttggtggcctctgacctacagccttacctccaaactg 682
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 46851619 agatttgtgaagagatccaggatttggtggcctctgacctacagccttatctccaaactg 46851678
Query: 683 tgccag 688
||||||
Sbjct: 46851679 tgccag 46851684
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 957 ggttccacctacttctaacatccgactgaccaccaactccttccgcaccttcgtcccccg 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46856857 ggttccacctacttctaacatccgactgaccaccaactccttccgcaccttcgtcccccg 46856916
Query: 1017 g 1017
|
Sbjct: 46856917 g 46856917
Score = 117 bits (59), Expect = 2e-23
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1185 ggccactaatgtgtccgccacgctgaccttncataccagcaagatcactggattcctaaa 1244
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 46860951 ggccactaatgtgtccgccgcgctgaccttcaataccagcaagatcactggattcctaaa 46861010
Query: 1245 gccgggaaag 1254
||||||||||
Sbjct: 46861011 gccgggaaag 46861020
Score = 81.8 bits (41), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1297 gtggagctgttggaggcgctgctcanttactaccttctncacaa-ctctaccccaaggt 1354
||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct: 46864841 gtggagctgttggaggcgctgctcaattactaccttctcaacaacctctaccccaaggt 46864899
Score = 79.8 bits (40), Expect = 4e-12
Identities = 56/59 (94%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 1363 agttggcagaaggcttccccct-cctctgctnaa-tatattcagctccatgaccctgtt 1419
|||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 46865689 agttggcagaaggcttccccctccctctgctaaattatattcagctccatgaccctgtt 46865747
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1254 gatacaaatggaactgaaagaatctaaagttggaatatt 1292
|||||||||||||||||||||||||||||||||||||||
Sbjct: 46861558 gatacaaatggaactgaaagaatctaaagttggaatatt 46861596
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,617,529
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 14
Length of query: 1419
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1398
Effective length of database: 2,808,413,156
Effective search space: 3926161592088
Effective search space used: 3926161592088
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)