Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007986
(951 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092615.1| transmembrane protein 176B [Bos taurus]. 184 1e-46
>ref|NP_001092615.1| transmembrane protein 176B [Bos taurus].
Length = 265
Score = 184 bits (466), Expect = 1e-46
Identities = 113/248 (45%), Positives = 133/248 (53%), Gaps = 9/248 (3%)
Frame = +3
Query: 90 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 257
M Q+TLTV G++V +QPTHIDIHIHQE VERLSHRP KA YGQ
Sbjct: 1 MAQNTLTVNGVDVGSVLSQPTHIDIHIHQESALAQLLKAGSSLVERLSHRPAKARIGYGQ 60
Query: 258 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 437
L LGVTQ+LLGA SCA+G LLYLG LRASGC HEK +GKLS
Sbjct: 61 LALGVTQLLLGAISCALGGLLYLGPWIQLRASGCALWAGFVAIAAGVGAIVHEKRRGKLS 120
Query: 438 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMCDSLVPTTES---PHGDSYSS 608
G VS VNS + D ++I S+CDSLVP T + SYSS
Sbjct: 121 GCVSGLLTLAGIATAVAAVVFCVNSFIWQYDGFYDISSVCDSLVPVTPTSWYQRRSSYSS 180
Query: 609 WEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL-DEEGS 785
WEE+ CR +M+M++DLFLGIR C + +AL DEEGS
Sbjct: 181 WEEENCRRYMQMLMDLFLGIRALLLAICALQVTVSLASLGVGLQSFCGQSSRALQDEEGS 240
Query: 786 EK-LLGEN 806
E+ LLGEN
Sbjct: 241 ERNLLGEN 248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,625,507
Number of extensions: 1285179
Number of successful extensions: 9272
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8863
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007986
(951 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853584.1| PREDICTED: similar to LR8 protein [Canis famili... 145 4e-35
>ref|XP_853584.1| PREDICTED: similar to LR8 protein [Canis familiaris].
Length = 273
Score = 145 bits (367), Expect = 4e-35
Identities = 98/256 (38%), Positives = 121/256 (47%), Gaps = 17/256 (6%)
Frame = +3
Query: 90 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 245
M Q+T+TV G++V +QPTHI+IHIHQE E SH P K
Sbjct: 1 MTQNTVTVNGVDVASTLSQPTHINIHIHQESALAQLLKAGASLKEFFSHPQDAGPSKTKM 60
Query: 246 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 425
SYGQL LG+TQ+LLGA SCA+G LLYLG +LRASGC HEKH
Sbjct: 61 SYGQLALGMTQILLGAVSCALGVLLYLGPWMELRASGCAFWAGSVAVVAGAGVIVHEKHG 120
Query: 426 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC--------DSLVPTTE 581
GKLSG S VNSLT + D I S C ++ TE
Sbjct: 121 GKLSGCTSGLLTLAGIAMAVAAFVLCVNSLTWQTDGFVYIDSACVYPESNVTNTTTGYTE 180
Query: 582 SPHGDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAP 761
+ +S W E+RCR +M+M+++L LGIR +
Sbjct: 181 TWRRSGWSQWNENRCRIYMQMLMNLLLGIRALLLAICVLQVIVSLTSLSMALRSSRGQSS 240
Query: 762 QALDEEGSE-KLLGEN 806
+ LDEEGSE KLLGEN
Sbjct: 241 RPLDEEGSEKKLLGEN 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,110,690
Number of extensions: 1301737
Number of successful extensions: 8995
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8552
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007986
(951 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134603.2| PREDICTED: transmembrane protein 176B-like i... 226 3e-60
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 94 1e-19
>ref|XP_003134603.2| PREDICTED: transmembrane protein 176B-like isoform 2 [Sus scrofa].
Length = 200
Score = 226 bits (577), Expect(2) = 3e-60
Identities = 120/179 (67%), Positives = 120/179 (67%)
Frame = +3
Query: 270 VTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLSGFVS 449
VTQVLLGATSCAVGALLYLGYGTDLRASGC HEKHQGKLSGFVS
Sbjct: 5 VTQVLLGATSCAVGALLYLGYGTDLRASGCAFWAGFAAIVAGAGAIVHEKHQGKLSGFVS 64
Query: 450 XXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMCDSLVPTTESPHGDSYSSWEEDRCR 629
YVNSLTREPDRLFNIGSMCDSLVPTTESPHGDSYSSWEEDRCR
Sbjct: 65 GLLTLAGAATAVAAVVLYVNSLTREPDRLFNIGSMCDSLVPTTESPHGDSYSSWEEDRCR 124
Query: 630 AHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEEGSEKLLGEN 806
AHMKMVVDLFLGIR CSPAPQALDEEGSEKLLGEN
Sbjct: 125 AHMKMVVDLFLGIRVLLLAVSVLQSLVALASLGLGLQSLCSPAPQALDEEGSEKLLGEN 183
Score = 23.9 bits (50), Expect(2) = 3e-60
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 821 PLKETTTAVIVL 856
P KETTTAVIVL
Sbjct: 189 PSKETTTAVIVL 200
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 94.0 bits (232), Expect = 1e-19
Identities = 47/61 (77%), Positives = 48/61 (78%)
Frame = +3
Query: 90 MVQDTLTVRGIEVTQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQLTLG 269
MVQDTLTVRGIEVTQPTHIDIHIHQE VERLSHRPPKASTSYGQLTLG
Sbjct: 1 MVQDTLTVRGIEVTQPTHIDIHIHQESALALLLKAGGSLVERLSHRPPKASTSYGQLTLG 60
Query: 270 V 272
+
Sbjct: 61 L 61
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,112,844
Number of extensions: 848453
Number of successful extensions: 6231
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5889
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007986
(951 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157681.1| transmembrane protein 176B [Mus musculus]. 109 4e-24
Alignment gi|NP_001157680.1| transmembrane protein 176B [Mus musculus]. 109 4e-24
Alignment gi|NP_001157679.1| transmembrane protein 176B [Mus musculus]. 109 4e-24
Alignment gi|NP_075543.1| transmembrane protein 176B [Mus musculus]. 109 4e-24
>ref|NP_001157681.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 109 bits (272), Expect = 4e-24
Identities = 82/246 (33%), Positives = 108/246 (43%), Gaps = 10/246 (4%)
Frame = +3
Query: 90 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 257
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 258 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 437
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 438 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 599
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 600 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 779
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 780 GSEKLL 797
SE+ L
Sbjct: 239 ESERKL 244
>ref|NP_001157680.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 109 bits (272), Expect = 4e-24
Identities = 82/246 (33%), Positives = 108/246 (43%), Gaps = 10/246 (4%)
Frame = +3
Query: 90 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 257
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 258 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 437
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 438 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 599
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 600 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 779
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 780 GSEKLL 797
SE+ L
Sbjct: 239 ESERKL 244
>ref|NP_001157679.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 109 bits (272), Expect = 4e-24
Identities = 82/246 (33%), Positives = 108/246 (43%), Gaps = 10/246 (4%)
Frame = +3
Query: 90 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 257
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 258 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 437
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 438 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 599
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 600 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 779
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 780 GSEKLL 797
SE+ L
Sbjct: 239 ESERKL 244
>ref|NP_075543.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 109 bits (272), Expect = 4e-24
Identities = 82/246 (33%), Positives = 108/246 (43%), Gaps = 10/246 (4%)
Frame = +3
Query: 90 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 257
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 258 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 437
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 438 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 599
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 600 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 779
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 780 GSEKLL 797
SE+ L
Sbjct: 239 ESERKL 244
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,894,404
Number of extensions: 1033433
Number of successful extensions: 6908
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6567
Number of HSP's successfully gapped: 4
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007986
(951 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094782.1| transmembrane protein 176B isoform a [Homo s... 119 5e-27
Alignment gi|NP_001094781.1| transmembrane protein 176B isoform a [Homo s... 119 5e-27
Alignment gi|NP_054739.3| transmembrane protein 176B isoform a [Homo sapi... 119 5e-27
Alignment gi|NP_001094784.1| transmembrane protein 176B isoform b [Homo s... 78 1e-14
>ref|NP_001094782.1| transmembrane protein 176B isoform a [Homo sapiens].
Length = 270
Score = 119 bits (297), Expect = 5e-27
Identities = 83/253 (32%), Positives = 111/253 (43%), Gaps = 14/253 (5%)
Frame = +3
Query: 90 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 245
M Q+T+ V G+ + +QPTH+++HIHQE + L H P A
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 246 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 425
Y QL LGVTQ+LLG SC +G L LG T L ASGC HEKH
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 426 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC---DSLVPTT--ESPH 590
GKL+G++S VNS + + I ++C D + PTT
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 591 GDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL 770
+ W+++ CRA+M+M+ LF IR C + Q L
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 771 DEEGSEK-LLGEN 806
+EEGSEK LLGEN
Sbjct: 241 NEEGSEKRLLGEN 253
>ref|NP_001094781.1| transmembrane protein 176B isoform a [Homo sapiens].
Length = 270
Score = 119 bits (297), Expect = 5e-27
Identities = 83/253 (32%), Positives = 111/253 (43%), Gaps = 14/253 (5%)
Frame = +3
Query: 90 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 245
M Q+T+ V G+ + +QPTH+++HIHQE + L H P A
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 246 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 425
Y QL LGVTQ+LLG SC +G L LG T L ASGC HEKH
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 426 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC---DSLVPTT--ESPH 590
GKL+G++S VNS + + I ++C D + PTT
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 591 GDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL 770
+ W+++ CRA+M+M+ LF IR C + Q L
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 771 DEEGSEK-LLGEN 806
+EEGSEK LLGEN
Sbjct: 241 NEEGSEKRLLGEN 253
>ref|NP_054739.3| transmembrane protein 176B isoform a [Homo sapiens].
Length = 270
Score = 119 bits (297), Expect = 5e-27
Identities = 83/253 (32%), Positives = 111/253 (43%), Gaps = 14/253 (5%)
Frame = +3
Query: 90 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 245
M Q+T+ V G+ + +QPTH+++HIHQE + L H P A
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 246 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 425
Y QL LGVTQ+LLG SC +G L LG T L ASGC HEKH
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 426 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC---DSLVPTT--ESPH 590
GKL+G++S VNS + + I ++C D + PTT
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 591 GDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL 770
+ W+++ CRA+M+M+ LF IR C + Q L
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 771 DEEGSEK-LLGEN 806
+EEGSEK LLGEN
Sbjct: 241 NEEGSEKRLLGEN 253
>ref|NP_001094784.1| transmembrane protein 176B isoform b [Homo sapiens].
Length = 233
Score = 77.8 bits (190), Expect = 1e-14
Identities = 65/249 (26%), Positives = 96/249 (38%), Gaps = 10/249 (4%)
Frame = +3
Query: 90 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 257
M Q+T+ V G+ + +QPTH+++HIHQE + L H T
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFH---PGDTVPST 57
Query: 258 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 437
+G Q+ LG + GA++ HEKH GKL+
Sbjct: 58 ARIGYEQLALGVIAAGAGAIV------------------------------HEKHPGKLA 87
Query: 438 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMCDS---LVPTT--ESPHGDSY 602
G++S VNS + + I ++CD + PTT
Sbjct: 88 GYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMRRSQE 147
Query: 603 SSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEEG 782
+ W+++ CRA+M+M+ LF IR C + Q L+EEG
Sbjct: 148 NQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPLNEEG 207
Query: 783 SEK-LLGEN 806
SEK LLGEN
Sbjct: 208 SEKRLLGEN 216
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,240,700
Number of extensions: 1269594
Number of successful extensions: 8858
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8433
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007986
(951 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 424 e-116
>Sscrofa_Chr18
|| Length = 61220071
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 438 ggcttcgtgtcaggtctgctcacgctggcgggcgctgccacggccgtggctgccgttgtc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654799 ggcttcgtgtcaggtctgctcacgctggcgggcgctgccacggccgtggctgccgttgtc 6654858
Query: 498 ctttatgtgaatagcttaacccgggaacctgaccgcctcttcaacattggctccatgtgt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654859 ctttatgtgaatagcttaacccgggaacctgaccgcctcttcaacattggctccatgtgt 6654918
Query: 558 gattccttagtccccaccactgagtccccacacggggactcctattcatcatgggaggag 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654919 gattccttagtccccaccactgagtccccacacggggactcctattcatcatgggaggag 6654978
Query: 618 gatcgctgcagagcccacatgaagatggtggtgg 651
||||||||||||||||||||||||||||||||||
Sbjct: 6654979 gatcgctgcagagcccacatgaagatggtggtgg 6655012
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 81 gcaggcaggatggtccaggacacgttgacggtgcgcggcatcgaggtgacccagcccacc 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652980 gcaggcaggatggtccaggacacgttgacggtgcgcggcatcgaggtgacccagcccacc 6653039
Query: 141 cacatcgacatccacatccaccaggaatccgccttggcactgctgctaaaagccgggggc 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6653040 cacatcgacatccacatccaccaggaatccgccttggcactgctgctaaaagccgggggc 6653099
Query: 201 tccctggtggagcgcctttctcaccgtccgcccaaggccagcacgagctatggacagttg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6653100 tccctggtggagcgcctttctcaccgtccgcccaaggccagcacgagctatggacagttg 6653159
Query: 261 acactcggggt 271
|||||||||||
Sbjct: 6653160 acactcggggt 6653170
Score = 333 bits (168), Expect = 1e-88
Identities = 178/180 (98%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 770 ggatgaggaagggtcagagaagctactaggggagaattcagtgcctccctccccctc-aa 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6656850 ggatgaggaagggtcagagaagctactaggggagaattcagtgcctccctccccctccaa 6656909
Query: 829 ggagaccaccacggctgtcattgtcctgtgagcagccaaagaccctgccgggacagtcta 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656910 ggagaccaccacggctgtcattgtcctgtgagcagccaaagaccctgccgggacagtcta 6656969
Query: 889 cgctcccagggccactgccctgtccccccattgcttcctgtggtgacaccctcctttccc 948
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6656970 cgctcccagggccactgccctgtccccccattgcttcctgtggtgacaccctcccttccc 6657029
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 650 ggacttgttcctaggaatccgtgttctgctcctggctgtctctgtcctgcagagccttgt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656099 ggacttgttcctaggaatccgtgttctgctcctggctgtctctgtcctgcagagccttgt 6656158
Query: 710 ggccttggcgtccctgggcctgggtcttcagagcttgtgcagcccggctcctcaagccct 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656159 ggccttggcgtccctgggcctgggtcttcagagcttgtgcagcccggctcctcaagccct 6656218
Query: 770 gg 771
||
Sbjct: 6656219 gg 6656220
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 269 ggtgacgcaggtgctgctgggggctaccagctgtgccgttggagcccttctctacctggg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654104 ggtgacgcaggtgctgctgggggctaccagctgtgccgttggagcccttctctacctggg 6654163
Query: 329 ctacgggactgatctgcgtgcctcgggctgtgccttctgggcaggctttgcgg 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654164 ctacgggactgatctgcgtgcctcgggctgtgccttctgggcaggctttgcgg 6654216
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 380 ggccatcgtggcgggagccggggccatcgtccatgagaagcaccagggcaaactttcag 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654512 ggccatcgtggcgggagccggggccatcgtccatgagaagcaccagggcaaactttcag 6654570
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 ccctttcttctgcggctcctacccgctggcctgtgct 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 6651286 ccctttcttctgcggctcctacccgctggcctgtgct 6651322
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,736,846
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 7
Length of query: 951
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 930
Effective length of database: 2,808,413,156
Effective search space: 2611824235080
Effective search space used: 2611824235080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)