Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007989
(973 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092615.1| transmembrane protein 176B [Bos taurus]. 209 3e-54
>ref|NP_001092615.1| transmembrane protein 176B [Bos taurus].
Length = 265
Score = 209 bits (532), Expect = 3e-54
Identities = 127/265 (47%), Positives = 148/265 (55%), Gaps = 9/265 (3%)
Frame = +1
Query: 118 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 285
M Q+TLTV G++V +QPTHIDIHIHQE VERLSHRP KA YGQ
Sbjct: 1 MAQNTLTVNGVDVGSVLSQPTHIDIHIHQESALAQLLKAGSSLVERLSHRPAKARIGYGQ 60
Query: 286 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 465
L LGVTQ+LLGA SCA+G LLYLG LRASGC HEK +GKLS
Sbjct: 61 LALGVTQLLLGAISCALGGLLYLGPWIQLRASGCALWAGFVAIAAGVGAIVHEKRRGKLS 120
Query: 466 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMCDSLVPTTES---PHGDSYSS 636
G VS VNS + D ++I S+CDSLVP T + SYSS
Sbjct: 121 GCVSGLLTLAGIATAVAAVVFCVNSFIWQYDGFYDISSVCDSLVPVTPTSWYQRRSSYSS 180
Query: 637 WEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL-DEEGS 813
WEE+ CR +M+M++DLFLGIR C + +AL DEEGS
Sbjct: 181 WEEENCRRYMQMLMDLFLGIRALLLAICALQVTVSLASLGVGLQSFCGQSSRALQDEEGS 240
Query: 814 EK-LLGENSVPPSPLQETTTAVIVL 885
E+ LLGENSVPPSP +E TTAVIVL
Sbjct: 241 ERNLLGENSVPPSPSKEKTTAVIVL 265
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,423,271
Number of extensions: 1267300
Number of successful extensions: 9293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8917
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007989
(973 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853584.1| PREDICTED: similar to LR8 protein [Canis famili... 169 4e-42
>ref|XP_853584.1| PREDICTED: similar to LR8 protein [Canis familiaris].
Length = 273
Score = 169 bits (428), Expect = 4e-42
Identities = 110/273 (40%), Positives = 135/273 (49%), Gaps = 17/273 (6%)
Frame = +1
Query: 118 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 273
M Q+T+TV G++V +QPTHI+IHIHQE E SH P K
Sbjct: 1 MTQNTVTVNGVDVASTLSQPTHINIHIHQESALAQLLKAGASLKEFFSHPQDAGPSKTKM 60
Query: 274 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 453
SYGQL LG+TQ+LLGA SCA+G LLYLG +LRASGC HEKH
Sbjct: 61 SYGQLALGMTQILLGAVSCALGVLLYLGPWMELRASGCAFWAGSVAVVAGAGVIVHEKHG 120
Query: 454 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC--------DSLVPTTE 609
GKLSG S VNSLT + D I S C ++ TE
Sbjct: 121 GKLSGCTSGLLTLAGIAMAVAAFVLCVNSLTWQTDGFVYIDSACVYPESNVTNTTTGYTE 180
Query: 610 SPHGDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAP 789
+ +S W E+RCR +M+M+++L LGIR +
Sbjct: 181 TWRRSGWSQWNENRCRIYMQMLMNLLLGIRALLLAICVLQVIVSLTSLSMALRSSRGQSS 240
Query: 790 QALDEEGSE-KLLGENSVPPSPLQETTTAVIVL 885
+ LDEEGSE KLLGENSVPPSP +E TTA I+L
Sbjct: 241 RPLDEEGSEKKLLGENSVPPSPSKEKTTAAIIL 273
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,929,329
Number of extensions: 1284312
Number of successful extensions: 9155
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8744
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007989
(973 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134603.2| PREDICTED: transmembrane protein 176B-like i... 254 5e-68
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 94 1e-19
>ref|XP_003134603.2| PREDICTED: transmembrane protein 176B-like isoform 2 [Sus scrofa].
Length = 200
Score = 254 bits (649), Expect = 5e-68
Identities = 135/196 (68%), Positives = 136/196 (69%)
Frame = +1
Query: 298 VTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLSGFVS 477
VTQVLLGATSCAVGALLYLGYGTDLRASGC HEKHQGKLSGFVS
Sbjct: 5 VTQVLLGATSCAVGALLYLGYGTDLRASGCAFWAGFAAIVAGAGAIVHEKHQGKLSGFVS 64
Query: 478 XXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMCDSLVPTTESPHGDSYSSWEEDRCR 657
YVNSLTREPDRLFNIGSMCDSLVPTTESPHGDSYSSWEEDRCR
Sbjct: 65 GLLTLAGAATAVAAVVLYVNSLTREPDRLFNIGSMCDSLVPTTESPHGDSYSSWEEDRCR 124
Query: 658 AHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEEGSEKLLGENS 837
AHMKMVVDLFLGIR CSPAPQALDEEGSEKLLGENS
Sbjct: 125 AHMKMVVDLFLGIRVLLLAVSVLQSLVALASLGLGLQSLCSPAPQALDEEGSEKLLGENS 184
Query: 838 VPPSPLQETTTAVIVL 885
VPPSP +ETTTAVIVL
Sbjct: 185 VPPSPSKETTTAVIVL 200
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 94.0 bits (232), Expect = 1e-19
Identities = 47/61 (77%), Positives = 48/61 (78%)
Frame = +1
Query: 118 MVQDTLTVRGIEVTQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQLTLG 297
MVQDTLTVRGIEVTQPTHIDIHIHQE VERLSHRPPKASTSYGQLTLG
Sbjct: 1 MVQDTLTVRGIEVTQPTHIDIHIHQESALALLLKAGGSLVERLSHRPPKASTSYGQLTLG 60
Query: 298 V 300
+
Sbjct: 61 L 61
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,629,693
Number of extensions: 838528
Number of successful extensions: 6275
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5961
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007989
(973 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157681.1| transmembrane protein 176B [Mus musculus]. 117 1e-26
Alignment gi|NP_001157680.1| transmembrane protein 176B [Mus musculus]. 117 1e-26
Alignment gi|NP_001157679.1| transmembrane protein 176B [Mus musculus]. 117 1e-26
Alignment gi|NP_075543.1| transmembrane protein 176B [Mus musculus]. 117 1e-26
>ref|NP_001157681.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 117 bits (294), Expect = 1e-26
Identities = 89/265 (33%), Positives = 118/265 (44%), Gaps = 11/265 (4%)
Frame = +1
Query: 118 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 285
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 286 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 465
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 466 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 627
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 628 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 807
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 808 GSE-KLLGENSVPPSPLQETTTAVI 879
SE KLL + P SP +E A++
Sbjct: 239 ESERKLLDGHPAPASPAKEKIPAIL 263
>ref|NP_001157680.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 117 bits (294), Expect = 1e-26
Identities = 89/265 (33%), Positives = 118/265 (44%), Gaps = 11/265 (4%)
Frame = +1
Query: 118 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 285
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 286 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 465
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 466 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 627
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 628 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 807
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 808 GSE-KLLGENSVPPSPLQETTTAVI 879
SE KLL + P SP +E A++
Sbjct: 239 ESERKLLDGHPAPASPAKEKIPAIL 263
>ref|NP_001157679.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 117 bits (294), Expect = 1e-26
Identities = 89/265 (33%), Positives = 118/265 (44%), Gaps = 11/265 (4%)
Frame = +1
Query: 118 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 285
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 286 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 465
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 466 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 627
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 628 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 807
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 808 GSE-KLLGENSVPPSPLQETTTAVI 879
SE KLL + P SP +E A++
Sbjct: 239 ESERKLLDGHPAPASPAKEKIPAIL 263
>ref|NP_075543.1| transmembrane protein 176B [Mus musculus].
Length = 263
Score = 117 bits (294), Expect = 1e-26
Identities = 89/265 (33%), Positives = 118/265 (44%), Gaps = 11/265 (4%)
Frame = +1
Query: 118 MVQDTLTVRGIEVT----QPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 285
MVQ T+TV G++V Q HI IHIHQ+ + LS P+A YGQ
Sbjct: 1 MVQSTVTVNGVKVASTHPQSAHISIHIHQKSALEQLLGAVGSLKKFLSW--PQARIHYGQ 58
Query: 286 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 465
L+LGVTQ+LLG SCA+G LY G T+L A GC HEK QGKLS
Sbjct: 59 LSLGVTQILLGLVSCALGVCLYFGPWTELCAFGCAFWSGSVAILAGVGTIVHEKRQGKLS 118
Query: 466 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLF--NIGSMCDSLVPTTESPHG----DS 627
G VS VNSL R+ + I S C+ L + + +G
Sbjct: 119 GQVSCLLLLACIATAAAATVLGVNSLIRQTSVPYYVEIFSTCNPLQSSMDPGYGTVRYSD 178
Query: 628 YSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEE 807
S W+ +RCR ++ M+++LFL + QAL+EE
Sbjct: 179 DSDWKTERCREYLNMMMNLFLAFCIMLTVVCILEIVVSVASLGLSLRSMYGRSSQALNEE 238
Query: 808 GSE-KLLGENSVPPSPLQETTTAVI 879
SE KLL + P SP +E A++
Sbjct: 239 ESERKLLDGHPAPASPAKEKIPAIL 263
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,539,844
Number of extensions: 1017303
Number of successful extensions: 6986
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6661
Number of HSP's successfully gapped: 4
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007989
(973 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094782.1| transmembrane protein 176B isoform a [Homo s... 139 3e-33
Alignment gi|NP_001094781.1| transmembrane protein 176B isoform a [Homo s... 139 3e-33
Alignment gi|NP_054739.3| transmembrane protein 176B isoform a [Homo sapi... 139 3e-33
Alignment gi|NP_001094784.1| transmembrane protein 176B isoform b [Homo s... 99 8e-21
>ref|NP_001094782.1| transmembrane protein 176B isoform a [Homo sapiens].
Length = 270
Score = 139 bits (351), Expect = 3e-33
Identities = 94/270 (34%), Positives = 124/270 (45%), Gaps = 14/270 (5%)
Frame = +1
Query: 118 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 273
M Q+T+ V G+ + +QPTH+++HIHQE + L H P A
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 274 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 453
Y QL LGVTQ+LLG SC +G L LG T L ASGC HEKH
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 454 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC---DSLVPTT--ESPH 618
GKL+G++S VNS + + I ++C D + PTT
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 619 GDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL 798
+ W+++ CRA+M+M+ LF IR C + Q L
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 799 DEEGSEK-LLGENSVPPSPLQETTTAVIVL 885
+EEGSEK LLGENSVPPSP +E T+ IVL
Sbjct: 241 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 270
>ref|NP_001094781.1| transmembrane protein 176B isoform a [Homo sapiens].
Length = 270
Score = 139 bits (351), Expect = 3e-33
Identities = 94/270 (34%), Positives = 124/270 (45%), Gaps = 14/270 (5%)
Frame = +1
Query: 118 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 273
M Q+T+ V G+ + +QPTH+++HIHQE + L H P A
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 274 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 453
Y QL LGVTQ+LLG SC +G L LG T L ASGC HEKH
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 454 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC---DSLVPTT--ESPH 618
GKL+G++S VNS + + I ++C D + PTT
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 619 GDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL 798
+ W+++ CRA+M+M+ LF IR C + Q L
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 799 DEEGSEK-LLGENSVPPSPLQETTTAVIVL 885
+EEGSEK LLGENSVPPSP +E T+ IVL
Sbjct: 241 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 270
>ref|NP_054739.3| transmembrane protein 176B isoform a [Homo sapiens].
Length = 270
Score = 139 bits (351), Expect = 3e-33
Identities = 94/270 (34%), Positives = 124/270 (45%), Gaps = 14/270 (5%)
Frame = +1
Query: 118 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHR----PPKAST 273
M Q+T+ V G+ + +QPTH+++HIHQE + L H P A
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFHPGDTVPSTARI 60
Query: 274 SYGQLTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQ 453
Y QL LGVTQ+LLG SC +G L LG T L ASGC HEKH
Sbjct: 61 GYEQLALGVTQILLGVVSCVLGVCLSLGPWTVLSASGCAFWAGSVVIAAGAGAIVHEKHP 120
Query: 454 GKLSGFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMC---DSLVPTT--ESPH 618
GKL+G++S VNS + + I ++C D + PTT
Sbjct: 121 GKLAGYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMR 180
Query: 619 GDSYSSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQAL 798
+ W+++ CRA+M+M+ LF IR C + Q L
Sbjct: 181 RSQENQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPL 240
Query: 799 DEEGSEK-LLGENSVPPSPLQETTTAVIVL 885
+EEGSEK LLGENSVPPSP +E T+ IVL
Sbjct: 241 NEEGSEKRLLGENSVPPSPSREQTSTAIVL 270
>ref|NP_001094784.1| transmembrane protein 176B isoform b [Homo sapiens].
Length = 233
Score = 98.6 bits (244), Expect = 8e-21
Identities = 76/266 (28%), Positives = 109/266 (40%), Gaps = 10/266 (3%)
Frame = +1
Query: 118 MVQDTLTVRGIEV----TQPTHIDIHIHQEXXXXXXXXXXXXXVERLSHRPPKASTSYGQ 285
M Q+T+ V G+ + +QPTH+++HIHQE + L H T
Sbjct: 1 MTQNTVIVNGVAMASRPSQPTHVNVHIHQESALTQLLKAGGSLKKFLFH---PGDTVPST 57
Query: 286 LTLGVTQVLLGATSCAVGALLYLGYGTDLRASGCXXXXXXXXXXXXXXXXXHEKHQGKLS 465
+G Q+ LG + GA++ HEKH GKL+
Sbjct: 58 ARIGYEQLALGVIAAGAGAIV------------------------------HEKHPGKLA 87
Query: 466 GFVSXXXXXXXXXXXXXXXXXYVNSLTREPDRLFNIGSMCDS---LVPTT--ESPHGDSY 630
G++S VNS + + I ++CD + PTT
Sbjct: 88 GYISSLLTLAGFATAMAAVVLCVNSFIWQTEPFLYIDTVCDRSDPVFPTTGYRWMRRSQE 147
Query: 631 SSWEEDRCRAHMKMVVDLFLGIRXXXXXXXXXXXXXXXXXXXXXXXXXCSPAPQALDEEG 810
+ W+++ CRA+M+M+ LF IR C + Q L+EEG
Sbjct: 148 NQWQKEECRAYMQMLRKLFTAIRALFLAVCVLKVIVSLVSLGVGLRNLCGQSSQPLNEEG 207
Query: 811 SEK-LLGENSVPPSPLQETTTAVIVL 885
SEK LLGENSVPPSP +E T+ IVL
Sbjct: 208 SEKRLLGENSVPPSPSREQTSTAIVL 233
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,019,713
Number of extensions: 1249495
Number of successful extensions: 8976
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8565
Number of HSP's successfully gapped: 5
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007989
(973 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 440 e-121
>Sscrofa_Chr18
|| Length = 61220071
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 78 cagacctctcatctgtacatccacctccccggcaggcaggatggtccaggacacgttgac 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652949 cagacctctcatctgtacatccacctccccggcaggcaggatggtccaggacacgttgac 6653008
Query: 138 ggtgcgcggcatcgaggtgacccagcccacccacatcgacatccacatccaccaggaatc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6653009 ggtgcgcggcatcgaggtgacccagcccacccacatcgacatccacatccaccaggaatc 6653068
Query: 198 cgccttggcactgctgctaaaagccgggggctccctggtggagcgcctttctcaccgtcc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6653069 cgccttggcactgctgctaaaagccgggggctccctggtggagcgcctttctcaccgtcc 6653128
Query: 258 gcccaaggccagcacgagctatggacagttgacactcggggt 299
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6653129 gcccaaggccagcacgagctatggacagttgacactcggggt 6653170
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 466 ggcttcgtgtcaggtctgctcacgctggcgggcgctgccacggccgtggctgccgttgtc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654799 ggcttcgtgtcaggtctgctcacgctggcgggcgctgccacggccgtggctgccgttgtc 6654858
Query: 526 ctttatgtgaatagcttaacccgggaacctgaccgcctcttcaacattggctccatgtgt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654859 ctttatgtgaatagcttaacccgggaacctgaccgcctcttcaacattggctccatgtgt 6654918
Query: 586 gattccttagtccccaccactgagtccccacacggggactcctattcatcatgggaggag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654919 gattccttagtccccaccactgagtccccacacggggactcctattcatcatgggaggag 6654978
Query: 646 gatcgctgcagagcccacatgaagatggtggtgg 679
||||||||||||||||||||||||||||||||||
Sbjct: 6654979 gatcgctgcagagcccacatgaagatggtggtgg 6655012
Score = 321 bits (162), Expect = 4e-85
Identities = 171/174 (98%)
Strand = Plus / Plus
Query: 798 ggatgaggaagggtcagagaagctactaggggagaattcagtgcctccctcccccctcca 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 6656850 ggatgaggaagggtcagagaagctactaggggagaattcagtgcctccctccccctccaa 6656909
Query: 858 ggagaccaccacggctgtcattgtcctgtgagcagccaaagaccctgccgggacagtcta 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656910 ggagaccaccacggctgtcattgtcctgtgagcagccaaagaccctgccgggacagtcta 6656969
Query: 918 cgctcccagggccactgccctgtccccccattgcttcctgtggtgacaccctcc 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656970 cgctcccagggccactgccctgtccccccattgcttcctgtggtgacaccctcc 6657023
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 678 ggacttgttcctaggaatccgtgttctgctcctggctgtctctgtcctgcagagccttgt 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656099 ggacttgttcctaggaatccgtgttctgctcctggctgtctctgtcctgcagagccttgt 6656158
Query: 738 ggccttggcgtccctgggcctgggtcttcagagcttgtgcagcccggctcctcaagccct 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6656159 ggccttggcgtccctgggcctgggtcttcagagcttgtgcagcccggctcctcaagccct 6656218
Query: 798 gg 799
||
Sbjct: 6656219 gg 6656220
Score = 224 bits (113), Expect = 7e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 297 ggtgacgcaggtgctgctgggggctaccagctgtgccgttggagcccttctctacctggg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654104 ggtgacgcaggtgctgctgggggctaccagctgtgccgttggagcccttctctacctggg 6654163
Query: 357 ctacgggactgatctgcgtgcctcgggctgtgccttctgggcaggctttgcgg 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654164 ctacgggactgatctgcgtgcctcgggctgtgccttctgggcaggctttgcgg 6654216
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 408 ggccatcgtggcgggagccggggccatcgtccatgagaagcaccagggcaaactttcag 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6654512 ggccatcgtggcgggagccggggccatcgtccatgagaagcaccagggcaaactttcag 6654570
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 1 ttcttctgcggctcctacccgctggcctgtgct 33
|||||||||||||||||||||||||||||||||
Sbjct: 6651290 ttcttctgcggctcctacccgctggcctgtgct 6651322
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,905,399
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 7
Length of query: 973
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 952
Effective length of database: 2,808,413,156
Effective search space: 2673609324512
Effective search space used: 2673609324512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)