Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007994
(1108 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776906.2| ubiquitin carboxyl-terminal hydrolase isozyme L... 516 e-157
Alignment gi|NP_001096019.1| BRCA1 associated protein-1 [Bos taurus]. 165 8e-41
Alignment gi|NP_001035631.1| ubiquitin carboxyl-terminal hydrolase isozym... 84 2e-16
Alignment gi|NP_001039637.1| ubiquitin carboxyl-terminal hydrolase isozym... 64 2e-10
>ref|NP_776906.2| ubiquitin carboxyl-terminal hydrolase isozyme L5 [Bos taurus].
Length = 328
Score = 516 bits (1329), Expect(2) = e-157
Identities = 261/283 (92%), Positives = 264/283 (93%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
Sbjct: 1 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKT+AKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTAAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLAEETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLAEE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEPMDTDQGSNMLSAIQSEVAKNQMLIEEEVQKLKRYKIE 283
Score = 60.1 bits (144), Expect(2) = e-157
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEH+QLIPLVEKAK+ +
Sbjct: 284 NIRRKHNYLPFIMELLKTLAEHKQLIPLVEKAKEKQ 319
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +1
Query: 853 LLRKPMDTDQGSNMLSAIQSEVAKIRCLLKKKYRN*KEYRLKH 981
L +PMDTDQGSNMLSAIQSEVAK + L++++ + K Y++++
Sbjct: 242 LAEEPMDTDQGSNMLSAIQSEVAKNQMLIEEEVQKLKRYKIEN 284
>ref|NP_001096019.1| BRCA1 associated protein-1 [Bos taurus].
Length = 711
Score = 165 bits (417), Expect = 8e-41
Identities = 99/257 (38%), Positives = 147/257 (57%), Gaps = 17/257 (6%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAG- 326
W +ESDPG+FT L++ FG +G QVEEI+ L+ + PV+G IFLFKW
Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRK 61
Query: 327 --------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFS 482
SV+ D ++ +FFA Q+I N+CAT A++SVLLNC++ D LG TLS K+F+
Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSNVD--LGPTLSRMKDFT 119
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAK----TSAKEEDAFHFVSYVPVNGR 650
+ F KG A+ N+ + + HNS AR + K ++ + +AFHFVSYVP+ GR
Sbjct: 120 KGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGR 179
Query: 651 LYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEG---EIRFNLMAIVSDRKMI 818
L+ELDGL+ PID G +D +W R VI +RI + G E R +++ + +
Sbjct: 180 LFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGIKYEARLHVLKVNRQTVLE 239
Query: 819 YEQKIAELQRQLAEETH 869
Q++ + + +TH
Sbjct: 240 ALQQLIRVTQPELIQTH 256
>ref|NP_001035631.1| ubiquitin carboxyl-terminal hydrolase isozyme L3 [Bos taurus].
Length = 230
Score = 84.3 bits (207), Expect = 2e-16
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLF----KWQ-- 305
W +E++P V + +K G Q +++ ++PE + +PV ++ LF K++
Sbjct: 6 WLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVF 65
Query: 306 --PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--GETLSEFK 473
EE S QD +++F KQ I+NAC T ++ + N +H G TL +F
Sbjct: 66 RTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESGSTLKKFL 123
Query: 474 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRL 653
E S S + L N D IR H + A + E + E+ HF++ V V+G L
Sbjct: 124 EESASMSPEERARYLENYDAIRVTHETSAHEGQTE---APNIDEKVDLHFIALVHVDGHL 180
Query: 654 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
YELDG + PI+ G + + + V +K +++ E+RFN +A+
Sbjct: 181 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMER-DPDELRFNAIAL 227
>ref|NP_001039637.1| ubiquitin carboxyl-terminal hydrolase isozyme L1 [Bos taurus].
Length = 252
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Frame = +3
Query: 357 IFFAKQVINNACATQAIVSVLLNCTHQ-DVHLGETLSEFKEFSQSFDAAMKGLALSNSDV 533
++F KQ I N+C T ++ + N + + G L +F ++ + ++
Sbjct: 108 VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEA 167
Query: 534 IRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDD 713
I+ H++ A++ D K + FHF+ + V+G LYELDG P++ G ++D
Sbjct: 168 IQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYELDGRMPFPVNHGTSSEDS 221
Query: 714 WISAVRPVIEKRIQKYSEGEIRFNLMAI 797
+ V + ++ +GE+RF+ +A+
Sbjct: 222 LLQDAAKVCREFTER-EQGEVRFSAVAL 248
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,770,389
Number of extensions: 893780
Number of successful extensions: 4890
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4826
Number of HSP's successfully gapped: 6
Length of query: 369
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,240,222
Effective search space: 3773658830
Effective search space used: 3773658830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007994
(1108 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536116.2| PREDICTED: similar to ubiquitin C-terminal hydr... 513 e-157
Alignment gi|XP_859529.1| PREDICTED: similar to BRCA1 associated protein-... 185 8e-47
Alignment gi|XP_859494.1| PREDICTED: similar to BRCA1 associated protein-... 185 8e-47
Alignment gi|XP_541853.2| PREDICTED: similar to BRCA1 associated protein-... 185 8e-47
Alignment gi|XP_536245.2| PREDICTED: similar to ubiquitin carboxy-termina... 64 2e-10
Alignment gi|XP_534147.2| PREDICTED: similar to Ubiquitin carboxyl-termin... 56 7e-08
>ref|XP_536116.2| PREDICTED: similar to ubiquitin C-terminal hydrolase UCH37 [Canis
familiaris].
Length = 329
Score = 513 bits (1320), Expect(2) = e-157
Identities = 262/284 (92%), Positives = 264/284 (92%), Gaps = 1/284 (0%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
Sbjct: 1 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLA-EETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLA EE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEEPMDTDQGNNMLSAIQSEVAKNQMLIEEEVQKLKRYKIE 284
Score = 61.6 bits (148), Expect(2) = e-157
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEHQQLIPLVEKAK+ +
Sbjct: 285 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 320
Score = 49.3 bits (116), Expect = 7e-06
Identities = 22/40 (55%), Positives = 34/40 (85%)
Frame = +1
Query: 862 KPMDTDQGSNMLSAIQSEVAKIRCLLKKKYRN*KEYRLKH 981
+PMDTDQG+NMLSAIQSEVAK + L++++ + K Y++++
Sbjct: 246 EPMDTDQGNNMLSAIQSEVAKNQMLIEEEVQKLKRYKIEN 285
>ref|XP_859529.1| PREDICTED: similar to BRCA1 associated protein-1 isoform 5 [Canis
familiaris].
Length = 714
Score = 185 bits (469), Expect = 8e-47
Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 18/250 (7%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAG- 326
W +ESDPG+FT L++ FG +G QVEEI+ L+ + PV+G IFLFKW
Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRK 61
Query: 327 --------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFS 482
SV+ D ++ +FFA Q+I N+CAT A++SVLLNC+ D LG TLS K+F+
Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTLSRMKDFT 119
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAK----TSAKEEDAFHFVSYVPVNGR 650
+ F KG A+ N+ + + HNS AR + K ++ + +AFHFVSYVP+ GR
Sbjct: 120 KGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGR 179
Query: 651 LYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKM 815
L+ELDGL+ PID G +D +W R VI +RI + GE IRFNLMA+V DR++
Sbjct: 180 LFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRI 239
Query: 816 IYEQKIAELQ 845
YE ++ L+
Sbjct: 240 KYEARLHVLK 249
>ref|XP_859494.1| PREDICTED: similar to BRCA1 associated protein-1 isoform 4 [Canis
familiaris].
Length = 739
Score = 185 bits (469), Expect = 8e-47
Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 18/250 (7%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAG- 326
W +ESDPG+FT L++ FG +G QVEEI+ L+ + PV+G IFLFKW
Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRK 61
Query: 327 --------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFS 482
SV+ D ++ +FFA Q+I N+CAT A++SVLLNC+ D LG TLS K+F+
Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTLSRMKDFT 119
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAK----TSAKEEDAFHFVSYVPVNGR 650
+ F KG A+ N+ + + HNS AR + K ++ + +AFHFVSYVP+ GR
Sbjct: 120 KGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGR 179
Query: 651 LYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKM 815
L+ELDGL+ PID G +D +W R VI +RI + GE IRFNLMA+V DR++
Sbjct: 180 LFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRI 239
Query: 816 IYEQKIAELQ 845
YE ++ L+
Sbjct: 240 KYEARLHVLK 249
>ref|XP_541853.2| PREDICTED: similar to BRCA1 associated protein-1 isoform 2 [Canis
familiaris].
Length = 729
Score = 185 bits (469), Expect = 8e-47
Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 18/250 (7%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAG- 326
W +ESDPG+FT L++ FG +G QVEEI+ L+ + PV+G IFLFKW
Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRK 61
Query: 327 --------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFS 482
SV+ D ++ +FFA Q+I N+CAT A++SVLLNC+ D LG TLS K+F+
Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTLSRMKDFT 119
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAK----TSAKEEDAFHFVSYVPVNGR 650
+ F KG A+ N+ + + HNS AR + K ++ + +AFHFVSYVP+ GR
Sbjct: 120 KGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGR 179
Query: 651 LYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKM 815
L+ELDGL+ PID G +D +W R VI +RI + GE IRFNLMA+V DR++
Sbjct: 180 LFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRI 239
Query: 816 IYEQKIAELQ 845
YE ++ L+
Sbjct: 240 KYEARLHVLK 249
>ref|XP_536245.2| PREDICTED: similar to ubiquitin carboxy-terminal hydrolase L1
[Canis familiaris].
Length = 326
Score = 64.3 bits (155), Expect = 2e-10
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 1/148 (0%)
Frame = +3
Query: 357 IFFAKQVINNACATQAIVSVLLNCTHQ-DVHLGETLSEFKEFSQSFDAAMKGLALSNSDV 533
++F KQ I N+C T ++ + N + + G L +F ++ + ++
Sbjct: 182 VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEA 241
Query: 534 IRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDD 713
I+ H++ A++ D K + FHF+ + V+G LYELDG P++ G ++D
Sbjct: 242 IQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYELDGRMPFPVNHGTSSEDS 295
Query: 714 WISAVRPVIEKRIQKYSEGEIRFNLMAI 797
+ V + ++ +GE+RF+ +A+
Sbjct: 296 LLQDAAKVCREFTER-EQGEVRFSAVAL 322
>ref|XP_534147.2| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase isozyme
L3 (UCH-L3) (Ubiquitin thiolesterase L3) [Canis
familiaris].
Length = 381
Score = 55.8 bits (133), Expect = 7e-08
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLF----KWQ-- 305
W +E++P V + +K G Q +++ ++PE + +PV ++ LF K++
Sbjct: 93 WLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVF 152
Query: 306 --PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--GETLSEFK 473
EE S QD +++F KQ I+NAC T ++ + N +H G TL +F
Sbjct: 153 RTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESGSTLKKFL 210
Query: 474 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAK 602
E S S + L N D IR H + A + E + +S++
Sbjct: 211 EESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQ 253
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,373,841
Number of extensions: 922416
Number of successful extensions: 5194
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5117
Number of HSP's successfully gapped: 8
Length of query: 369
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 265
Effective length of database: 15,407,560
Effective search space: 4083003400
Effective search space used: 4083003400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007994
(1108 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116682.1| ubiquitin carboxyl-terminal hydrolase isozym... 513 e-157
Alignment gi|XP_001925271.3| PREDICTED: ubiquitin carboxyl-terminal hydro... 185 4e-47
Alignment gi|XP_003130528.1| PREDICTED: ubiquitin carboxyl-terminal hydro... 67 9e-24
Alignment gi|NP_001070695.1| ubiquitin carboxyl-terminal hydrolase isozym... 79 5e-15
Alignment gi|NP_998928.1| ubiquitin carboxyl-terminal hydrolase isozyme L... 69 6e-12
>ref|NP_001116682.1| ubiquitin carboxyl-terminal hydrolase isozyme L5 [Sus scrofa].
Length = 329
Score = 513 bits (1320), Expect(2) = e-157
Identities = 262/284 (92%), Positives = 264/284 (92%), Gaps = 1/284 (0%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
Sbjct: 1 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLA-EETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLA EE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEEPMDTDQGSNMLSAIQSEVAKNQMLIEEEVQKLKRYKIE 284
Score = 61.6 bits (148), Expect(2) = e-157
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEHQQLIPLVEKAK+ +
Sbjct: 285 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 320
Score = 50.4 bits (119), Expect = 2e-06
Identities = 23/40 (57%), Positives = 34/40 (85%)
Frame = +1
Query: 862 KPMDTDQGSNMLSAIQSEVAKIRCLLKKKYRN*KEYRLKH 981
+PMDTDQGSNMLSAIQSEVAK + L++++ + K Y++++
Sbjct: 246 EPMDTDQGSNMLSAIQSEVAKNQMLIEEEVQKLKRYKIEN 285
>ref|XP_001925271.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase BAP1 [Sus scrofa].
Length = 729
Score = 185 bits (469), Expect = 4e-47
Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 18/250 (7%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAG- 326
W +ESDPG+FT L++ FG +G QVEEI+ L+ + PV+G IFLFKW
Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRK 61
Query: 327 --------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFS 482
SV+ D ++ +FFA Q+I N+CAT A++SVLLNC+ D LG TLS K+F+
Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTLSRMKDFT 119
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAK----TSAKEEDAFHFVSYVPVNGR 650
+ F KG A+ N+ + + HNS AR + K ++ + +AFHFVSYVP+ GR
Sbjct: 120 KGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGR 179
Query: 651 LYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKM 815
L+ELDGL+ PID G +D +W R VI +RI + GE IRFNLMA+V DR++
Sbjct: 180 LFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRI 239
Query: 816 IYEQKIAELQ 845
YE ++ L+
Sbjct: 240 KYEARLHVLK 249
>ref|XP_003130528.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like
[Sus scrofa].
Length = 109
Score = 67.0 bits (162), Expect(2) = 9e-24
Identities = 42/64 (65%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 789 MAIVSDRKMIYEQKIAELQRQLA-EETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKR 965
MAIVSDRKMIYEQKIAELQRQLA EE G + +NQMLIEEEVQKLKR
Sbjct: 1 MAIVSDRKMIYEQKIAELQRQLAEEEPMDTDQGSNMLSAIQSEVAKNQMLIEEEVQKLKR 60
Query: 966 I*IE 977
IE
Sbjct: 61 YKIE 64
Score = 61.6 bits (148), Expect(2) = 9e-24
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEHQQLIPLVEKAK+ +
Sbjct: 65 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 100
Score = 50.4 bits (119), Expect = 2e-06
Identities = 23/40 (57%), Positives = 34/40 (85%)
Frame = +1
Query: 862 KPMDTDQGSNMLSAIQSEVAKIRCLLKKKYRN*KEYRLKH 981
+PMDTDQGSNMLSAIQSEVAK + L++++ + K Y++++
Sbjct: 26 EPMDTDQGSNMLSAIQSEVAKNQMLIEEEVQKLKRYKIEN 65
>ref|NP_001070695.1| ubiquitin carboxyl-terminal hydrolase isozyme L3 [Sus scrofa].
Length = 230
Score = 79.0 bits (193), Expect = 5e-15
Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 12/228 (5%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLF----KWQ-- 305
W +E++P V + +K G Q +++ ++PE + +PV ++ LF K++
Sbjct: 6 WLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVF 65
Query: 306 --PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--GETLSEFK 473
EE S QD +++F KQ I+NAC T ++ + N ++ +H G TL +F
Sbjct: 66 RTEEEEKIKSQGQDVT-PSVYFMKQTISNACGTIGLIHAIANNKNK-MHFESGSTLKKFL 123
Query: 474 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRL 653
E S S + L + D I H + A + E + E+ HF++ V V+G L
Sbjct: 124 EESASMSPDERARYLESYDAIPVTHETSAHEGQTE---APNIDEKVDLHFIALVHVDGHL 180
Query: 654 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
YELDG + PI+ G + + + V +K +++ E+RFN +A+
Sbjct: 181 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMER-DPDELRFNAIAL 227
>ref|NP_998928.1| ubiquitin carboxyl-terminal hydrolase isozyme L1 [Sus scrofa].
Length = 223
Score = 68.6 bits (166), Expect = 6e-12
Identities = 53/225 (23%), Positives = 102/225 (45%), Gaps = 12/225 (5%)
Frame = +3
Query: 159 MESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKLK-PVHGLIFLF---------KWQ 305
ME +P + +++ G G + ++ LE E+ + P L+ LF + +
Sbjct: 6 MEINPEMLNKVLTRLGVAGHWRFADVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65
Query: 306 PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQ-DVHLGETLSEFKEFS 482
EE G V ++F KQ I N+C T ++ + N + + G L +F +
Sbjct: 66 QIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSET 121
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYEL 662
+ + ++ I+ H++ A++ D K + FHF+ + V+G LYEL
Sbjct: 122 EKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLYEL 175
Query: 663 DGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
DG P++ GA ++D + V + ++ +GE+RF+ +A+
Sbjct: 176 DGRMPFPVNHGASSEDSLLQDAAKVCREFTER-EQGEVRFSAVAL 219
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,956,653
Number of extensions: 573772
Number of successful extensions: 2968
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2924
Number of HSP's successfully gapped: 9
Length of query: 369
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,854,232
Effective search space: 2381788408
Effective search space used: 2381788408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007994
(1108 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153338.1| ubiquitin carboxyl-terminal hydrolase isozym... 505 e-155
Alignment gi|NP_062508.2| ubiquitin carboxyl-terminal hydrolase isozyme L... 500 e-153
Alignment gi|NP_081364.1| ubiquitin carboxyl-terminal hydrolase BAP1 [Mus... 186 4e-47
Alignment gi|NP_057932.2| ubiquitin carboxyl-terminal hydrolase isozyme L... 86 4e-17
Alignment gi|NP_291085.1| ubiquitin carboxyl-terminal hydrolase isozyme L... 82 1e-15
Alignment gi|NP_035800.2| ubiquitin carboxyl-terminal hydrolase isozyme L... 70 3e-12
>ref|NP_001153338.1| ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 2 [Mus
musculus].
Length = 328
Score = 505 bits (1300), Expect(2) = e-155
Identities = 255/283 (90%), Positives = 261/283 (92%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
M+ NAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPE+FEKLKPVHGLIFLFKWQP
Sbjct: 1 MSSNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRL+TIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFD KT AKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTPAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWI+AVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLAEETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLAEE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEPMDTDQGSTVLSAIQSEVARNQMLIEEEVQKLKRYKIE 283
Score = 61.6 bits (148), Expect(2) = e-155
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEHQQLIPLVEKAK+ +
Sbjct: 284 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 319
>ref|NP_062508.2| ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 1 [Mus
musculus].
Length = 329
Score = 500 bits (1288), Expect(2) = e-153
Identities = 255/284 (89%), Positives = 261/284 (91%), Gaps = 1/284 (0%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
M+ NAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPE+FEKLKPVHGLIFLFKWQP
Sbjct: 1 MSSNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRL+TIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLETIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFD KT AKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTPAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWI+AVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWITAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLA-EETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLA EE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEEPMDTDQGSTVLSAIQSEVARNQMLIEEEVQKLKRYKIE 284
Score = 61.6 bits (148), Expect(2) = e-153
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEHQQLIPLVEKAK+ +
Sbjct: 285 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 320
>ref|NP_081364.1| ubiquitin carboxyl-terminal hydrolase BAP1 [Mus musculus].
Length = 728
Score = 186 bits (471), Expect = 4e-47
Identities = 108/250 (43%), Positives = 152/250 (60%), Gaps = 18/250 (7%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAG- 326
W +ESDPG+FT L++ FG +G QVEEI+ L+ + PV+G IFLFKW
Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRK 61
Query: 327 --------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFS 482
SV+ D ++ +FFA Q+I N+CAT A++SVLLNC++ D LG TLS K+F+
Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSNVD--LGPTLSRMKDFT 119
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAK----TSAKEEDAFHFVSYVPVNGR 650
+ F KG A+ N+ + + HNS AR + K ++ + +AFHFVSYVP+ GR
Sbjct: 120 KGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGR 179
Query: 651 LYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKM 815
L+ELDGL+ PID G +D +W R VI +RI + GE IRFNLMA+V DR++
Sbjct: 180 LFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRI 239
Query: 816 IYEQKIAELQ 845
YE ++ L+
Sbjct: 240 KYETRLHVLK 249
>ref|NP_057932.2| ubiquitin carboxyl-terminal hydrolase isozyme L3 [Mus musculus].
Length = 230
Score = 86.3 bits (212), Expect = 4e-17
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLF----KWQ-- 305
W +E++P V + +K G Q +++ +EPE + +PV ++ LF K++
Sbjct: 6 WLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMEPELLSMVPRPVCAVLLLFPITEKYEVF 65
Query: 306 --PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--GETLSEFK 473
EE S QD +++F KQ I+NAC T ++ + N +H G TL +F
Sbjct: 66 RTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESGSTLKKFL 123
Query: 474 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRL 653
E S S + L N D IR H + A + E S E+ HF++ V V+G L
Sbjct: 124 EESVSMSPEERAKFLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIALVHVDGHL 180
Query: 654 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
YELDG + PI+ G + + + V +K +++ E+RFN +A+
Sbjct: 181 YELDGRKPFPINHGKTSDETLLEDAIEVCKKFMER-DPDELRFNAIAL 227
>ref|NP_291085.1| ubiquitin carboxyl-terminal hydrolase isozyme L4 [Mus musculus].
Length = 233
Score = 81.6 bits (200), Expect = 1e-15
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLF----KWQ-- 305
W +E++P V + +K G Q +++ +E E + +PV ++ LF K++
Sbjct: 6 WLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMESELLSIIPRPVCAVLLLFPITEKYEVF 65
Query: 306 --PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVL--LNCTHQDVHL--GETLSE 467
EE S QD +++F KQ I+NAC T + ++ + VH G TL +
Sbjct: 66 RTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGTIGLIHAIANNKDKVHFESGSTLKK 124
Query: 468 FKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNG 647
F E S S + L N D IR H + A + E S E+ HF++ V V+G
Sbjct: 125 FLEESVSMSPEERAKYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIALVHVDG 181
Query: 648 RLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
LYELDG + PI+ G + + + V V +K +++ E+RFN +A+
Sbjct: 182 HLYELDGWKPFPINHGKTSDETLLEDVIKVCKKFMER-DPDELRFNAIAL 230
>ref|NP_035800.2| ubiquitin carboxyl-terminal hydrolase isozyme L1 [Mus musculus].
Length = 223
Score = 70.1 bits (170), Expect = 3e-12
Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 12/225 (5%)
Frame = +3
Query: 159 MESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF---------KWQ 305
ME +P + +++ G G + ++ LE E + P L+ LF + +
Sbjct: 6 MEINPEMLNKVLAKLGVAGQWRFADVLGLEEETLGSVPSPACALLLLFPLTAQHENFRKK 65
Query: 306 PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQ-DVHLGETLSEFKEFS 482
EE G V ++F KQ I N+C T ++ + N + + G L +F +
Sbjct: 66 QIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSET 121
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYEL 662
+ + ++ I+ H+S A++ D K + FHF+ + V+G LYEL
Sbjct: 122 EKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVN------FHFILFNNVDGHLYEL 175
Query: 663 DGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
DG P++ GA ++D + V + ++ +GE+RF+ +A+
Sbjct: 176 DGRMPFPVNHGASSEDSLLQDAAKVCREFTER-EQGEVRFSAVAL 219
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,361,179
Number of extensions: 768620
Number of successful extensions: 3596
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3548
Number of HSP's successfully gapped: 8
Length of query: 369
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 266
Effective length of database: 12,523,851
Effective search space: 3331344366
Effective search space used: 3331344366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007994
(1108 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186190.1| ubiquitin carboxyl-terminal hydrolase isozym... 516 e-158
Alignment gi|NP_001186192.1| ubiquitin carboxyl-terminal hydrolase isozym... 516 e-157
Alignment gi|NP_001186191.1| ubiquitin carboxyl-terminal hydrolase isozym... 516 e-157
Alignment gi|NP_057068.1| ubiquitin carboxyl-terminal hydrolase isozyme L... 511 e-156
Alignment gi|NP_004647.1| ubiquitin carboxyl-terminal hydrolase BAP1 [Hom... 185 7e-47
Alignment gi|NP_005993.1| ubiquitin carboxyl-terminal hydrolase isozyme L... 85 1e-16
Alignment gi|NP_004172.2| ubiquitin carboxyl-terminal hydrolase isozyme L... 68 1e-11
>ref|NP_001186190.1| ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 2 [Homo
sapiens].
Length = 328
Score = 516 bits (1328), Expect(2) = e-158
Identities = 261/283 (92%), Positives = 263/283 (92%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
Sbjct: 1 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFD KTSAKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLAEETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLAEE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIE 283
Score = 61.6 bits (148), Expect(2) = e-158
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEHQQLIPLVEKAK+ +
Sbjct: 284 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 319
>ref|NP_001186192.1| ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 4 [Homo
sapiens].
Length = 316
Score = 516 bits (1328), Expect(2) = e-157
Identities = 261/283 (92%), Positives = 263/283 (92%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
Sbjct: 1 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFD KTSAKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLAEETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLAEE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIE 283
Score = 59.3 bits (142), Expect(2) = e-157
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAK 1075
NIRRK NYLPFI E +KTLAEHQQLIPLVEK K
Sbjct: 284 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKGK 316
>ref|NP_001186191.1| ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 3 [Homo
sapiens].
Length = 326
Score = 516 bits (1328), Expect(2) = e-157
Identities = 261/283 (92%), Positives = 263/283 (92%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
Sbjct: 1 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFD KTSAKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLAEETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLAEE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIE 283
Score = 58.9 bits (141), Expect(2) = e-157
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKK 1078
NIRRK NYLPFI E +KTLAEHQQLIPLVEK +K
Sbjct: 284 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKFEK 317
>ref|NP_057068.1| ubiquitin carboxyl-terminal hydrolase isozyme L5 isoform 1 [Homo
sapiens].
Length = 329
Score = 511 bits (1316), Expect(2) = e-156
Identities = 261/284 (91%), Positives = 263/284 (92%), Gaps = 1/284 (0%)
Frame = +3
Query: 129 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 308
MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP
Sbjct: 1 MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQP 60
Query: 309 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 488
GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS
Sbjct: 61 GEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQS 120
Query: 489 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLYELDG 668
FDAAMKGLALSNSDVIRQVHNSFARQQMFEFD KTSAKEEDAFHFVSYVPVNGRLYELDG
Sbjct: 121 FDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDG 180
Query: 669 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 848
LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR
Sbjct: 181 LREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAELQR 240
Query: 849 QLA-EETHGYRSG**HVKCYSVRSCQNQMLIEEEVQKLKRI*IE 977
QLA EE G + +NQMLIEEEVQKLKR IE
Sbjct: 241 QLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIE 284
Score = 61.6 bits (148), Expect(2) = e-156
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 977 NIRRKRNYLPFIYETVKTLAEHQQLIPLVEKAKKTE 1084
NIRRK NYLPFI E +KTLAEHQQLIPLVEKAK+ +
Sbjct: 285 NIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQ 320
>ref|NP_004647.1| ubiquitin carboxyl-terminal hydrolase BAP1 [Homo sapiens].
Length = 729
Score = 185 bits (469), Expect = 7e-47
Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 18/250 (7%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAG- 326
W +ESDPG+FT L++ FG +G QVEEI+ L+ + PV+G IFLFKW
Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIYDLQSKC---QGPVYGFIFLFKWIEERRSRRK 61
Query: 327 --------SVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFS 482
SV+ D ++ +FFA Q+I N+CAT A++SVLLNC+ D LG TLS K+F+
Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSSVD--LGPTLSRMKDFT 119
Query: 483 QSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAK----TSAKEEDAFHFVSYVPVNGR 650
+ F KG A+ N+ + + HNS AR + K ++ + +AFHFVSYVP+ GR
Sbjct: 120 KGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFVSYVPITGR 179
Query: 651 LYELDGLREGPIDLGACNQD-DWISAVRPVIEKRIQKYSEGE----IRFNLMAIVSDRKM 815
L+ELDGL+ PID G +D +W R VI +RI + GE IRFNLMA+V DR++
Sbjct: 180 LFELDGLKVYPIDHGPWGEDEEWTDKARRVIMERIGLATAGEPYHDIRFNLMAVVPDRRI 239
Query: 816 IYEQKIAELQ 845
YE ++ L+
Sbjct: 240 KYEARLHVLK 249
>ref|NP_005993.1| ubiquitin carboxyl-terminal hydrolase isozyme L3 [Homo sapiens].
Length = 230
Score = 85.1 bits (209), Expect = 1e-16
Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Frame = +3
Query: 150 WCLMESDPGVFTELIKGFGCR-GAQVEEIWSLEPENFEKL-KPVHGLIFLF----KWQ-- 305
W +E++P V + +K G Q +++ ++PE + +PV ++ LF K++
Sbjct: 6 WLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVF 65
Query: 306 --PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--GETLSEFK 473
EE S QD +++F KQ I+NAC T ++ + N +H G TL +F
Sbjct: 66 RTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESGSTLKKFL 123
Query: 474 EFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRL 653
E S S + L N D IR H + A + E S E+ HF++ V V+G L
Sbjct: 124 EESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIALVHVDGHL 180
Query: 654 YELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
YELDG + PI+ G + + + V +K +++ E+RFN +A+
Sbjct: 181 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMER-DPDELRFNAIAL 227
>ref|NP_004172.2| ubiquitin carboxyl-terminal hydrolase isozyme L1 [Homo sapiens].
Length = 223
Score = 68.2 bits (165), Expect = 1e-11
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 14/227 (6%)
Frame = +3
Query: 159 MESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKLK-PVHGLIFLF---------KWQ 305
ME +P + +++ G G + ++ LE E+ + P L+ LF + +
Sbjct: 6 MEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTAQHENFRKK 65
Query: 306 PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQD---VHLGETLSEFKE 476
EE G V ++F KQ I N+C T ++ + N +QD G L +F
Sbjct: 66 QIEELKGQEVSPK----VYFMKQTIGNSCGTIGLIHAVAN--NQDKLGFEDGSVLKQFLS 119
Query: 477 FSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDAKTSAKEEDAFHFVSYVPVNGRLY 656
++ + ++ I+ H++ A++ D K + FHF+ + V+G LY
Sbjct: 120 ETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVN------FHFILFNNVDGHLY 173
Query: 657 ELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAI 797
ELDG P++ GA ++D + V + ++ +GE+RF+ +A+
Sbjct: 174 ELDGRMPFPVNHGASSEDTLLKDAAKVCREFTER-EQGEVRFSAVAL 219
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,766,010
Number of extensions: 909370
Number of successful extensions: 4830
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4769
Number of HSP's successfully gapped: 11
Length of query: 369
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,868,908
Effective search space: 3940260620
Effective search space used: 3940260620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007994
(1108 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 268 6e-69
>Sscrofa_Chr10
|| Length = 79102373
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 561 agacagcaaatgtttgaatttgatgcaaagacatcagcaaaagaagaagatgcttttcac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2259282 agacagcaaatgtttgaatttgatgcaaagacatcagcaaaagaagaagatgcttttcac 2259341
Query: 621 tttgtcagttacgttcctgtgaatggaagactgtacgaattagatggattaagagaagga 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2259342 tttgtcagttacgttcctgtgaatggaagactgtacgaattagatggattaagagaagga 2259401
Query: 681 ccgatcgatttaggt 695
|||||||||||||||
Sbjct: 2259402 ccgatcgatttaggt 2259416
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 561 agacagcaaatgtttgaatttgatgcaaagacatcagcaaaagaagaagatgcttttcac 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353301 agacagcaaatgtttgaatttgatgcaaagacatcagcaaaagaagaagatgcttttcac 2353360
Query: 621 tttgtcagttacgttcctgtgaatggaagactgtacgaattagatggattaagagaagga 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353361 tttgtcagttacgttcctgtgaatggaagactgtacgaattagatggattaagagaagga 2353420
Query: 681 ccgatcgatttaggt 695
|||||||||||||||
Sbjct: 2353421 ccgatcgatttaggt 2353435
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 372 caggtaattaataatgcttgtgctactcaagccatagtaagtgtgttattgaactgtacc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258893 caggtaattaataatgcttgtgctactcaagccatagtaagtgtgttattgaactgtacc 2258952
Query: 432 catcaggatgtccatttaggagagacattgtcagagtttaaggaattctcacaaagtttt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258953 catcaggatgtccatttaggagagacattgtcagagtttaaggaattctcacaaagtttt 2259012
Query: 492 gatgcagct 500
|||||||||
Sbjct: 2259013 gatgcagct 2259021
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 372 caggtaattaataatgcttgtgctactcaagccatagtaagtgtgttattgaactgtacc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352912 caggtaattaataatgcttgtgctactcaagccatagtaagtgtgttattgaactgtacc 2352971
Query: 432 catcaggatgtccatttaggagagacattgtcagagtttaaggaattctcacaaagtttt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352972 catcaggatgtccatttaggagagacattgtcagagtttaaggaattctcacaaagtttt 2353031
Query: 492 gatgcagct 500
|||||||||
Sbjct: 2353032 gatgcagct 2353040
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 269 gccagttcatgggctgatttttcttttcaagtggcagcccggagaagaaccagcaggctc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344463 gccagttcatgggctgatttttcttttcaagtggcagcccggagaagaaccagcaggctc 2344522
Query: 329 tgtggttcaggactcccgacttgacacgatattttttgccaagcaggta 377
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344523 tgtggttcaggactcccgacttgacacgatattttttgccaagcaggta 2344571
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 758 gtacagtgaaggtgaaattcgatttaacttaatggccattgtgtctgacaggaaaatgat 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267779 gtacagtgaaggtgaaattcgatttaacttaatggccattgtgtctgacaggaaaatgat 2267838
Query: 818 atatgaacagaagatagcagagttacaaagacagcttgctgagg 861
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267839 atatgaacagaagatagcagagttacaaagacagcttgctgagg 2267882
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 758 gtacagtgaaggtgaaattcgatttaacttaatggccattgtgtctgacaggaaaatgat 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406081 gtacagtgaaggtgaaattcgatttaacttaatggccattgtgtctgacaggaaaatgat 2406140
Query: 818 atatgaacagaagatagcagagttacaaagacagcttgctgagg 861
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406141 atatgaacagaagatagcagagttacaaagacagcttgctgagg 2406184
Score = 190 bits (96), Expect = 1e-45
Identities = 103/104 (99%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 863 aacccatggatacagatcagggtagtaacatgttaagtgctattcagtcagaagttgcc- 921
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2268965 aacccatggatacagatcagggtagtaacatgttaagtgctattcagtcagaagttgcca 2269024
Query: 922 aaaatcagatgcttattgaagaagaagtacagaaattaaaaaga 965
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269025 aaaatcagatgcttattgaagaagaagtacagaaattaaaaaga 2269068
Score = 190 bits (96), Expect = 1e-45
Identities = 103/104 (99%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 863 aacccatggatacagatcagggtagtaacatgttaagtgctattcagtcagaagttgcc- 921
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2407267 aacccatggatacagatcagggtagtaacatgttaagtgctattcagtcagaagttgcca 2407326
Query: 922 aaaatcagatgcttattgaagaagaagtacagaaattaaaaaga 965
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2407327 aaaatcagatgcttattgaagaagaagtacagaaattaaaaaga 2407370
Score = 143 bits (72), Expect = 2e-31
Identities = 92/96 (95%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 976 aaacatcagaaggaagcgtaattatctgcctttcatttatgaaactgt-aaagactttag 1034
||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||
Sbjct: 2272396 aaacatcagaaggaagcataattatctgcctttcatt-atggaactgttaaagactttag 2272454
Query: 1035 cagaacaccagcagttaatacctctcgtagaaaagg 1070
||||||||||||||||||||||||||||||||||||
Sbjct: 2272455 cagaacaccagcagttaatacctctcgtagaaaagg 2272490
Score = 143 bits (72), Expect = 2e-31
Identities = 92/96 (95%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 976 aaacatcagaaggaagcgtaattatctgcctttcatttatgaaactgt-aaagactttag 1034
||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||
Sbjct: 2410699 aaacatcagaaggaagcataattatctgcctttcatt-atggaactgttaaagactttag 2410757
Query: 1035 cagaacaccagcagttaatacctctcgtagaaaagg 1070
||||||||||||||||||||||||||||||||||||
Sbjct: 2410758 cagaacaccagcagttaatacctctcgtagaaaagg 2410793
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 691 taggtgcatgcaatcaagatgactggatcagcgcagtgaggccagtcatagaaaaaagga 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2261859 taggtgcatgcaatcaagatgactggatcagcgcagtgaggccagtcatagaaaaaagga 2261918
Query: 751 tacaaaagta 760
||||||||||
Sbjct: 2261919 tacaaaagta 2261928
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 691 taggtgcatgcaatcaagatgactggatcagcgcagtgaggccagtcatagaaaaaagga 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2355878 taggtgcatgcaatcaagatgactggatcagcgcagtgaggccagtcatagaaaaaagga 2355937
Query: 751 tacaaaagta 760
||||||||||
Sbjct: 2355938 tacaaaagta 2355947
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 204 ggttgccgaggagcccaagtagaagaaatatggagtttagagcctgagaattttgaaaaa 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2342777 ggttgccgaggagcccaagtagaagaaatatggagtttagagcctgagaattttgaaaaa 2342836
Query: 264 ttaaag 269
||||||
Sbjct: 2342837 ttaaag 2342842
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 501 atgaaaggtttggccctgagtaattcggatgtgattcgccaagtacacaacagtttcgcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2259143 atgaaaggtttggccctgagtaattcggatgtgattcgccaagtacacaacagtttcgcc 2259202
Query: 561 ag 562
||
Sbjct: 2259203 ag 2259204
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 501 atgaaaggtttggccctgagtaattcggatgtgattcgccaagtacacaacagtttcgcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353162 atgaaaggtttggccctgagtaattcggatgtgattcgccaagtacacaacagtttcgcc 2353221
Query: 561 ag 562
||
Sbjct: 2353222 ag 2353223
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,839,012
Number of extensions: 327
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 16
Length of query: 1108
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1087
Effective length of database: 2,808,413,156
Effective search space: 3052745100572
Effective search space used: 3052745100572
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)