Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007997
(2115 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033118.1| TBC1 domain family member 20 [Bos taurus]. 666 0.0
>ref|NP_001033118.1| TBC1 domain family member 20 [Bos taurus].
Length = 403
Score = 666 bits (1719), Expect = 0.0
Identities = 335/403 (83%), Positives = 342/403 (84%)
Frame = +3
Query: 165 MALRSAQGDGPTSPRWDGGAEKADFNAXXXXXVAEIYQALNSDPTDVAALRRMAISEGGL 344
MALRSA+GDGPTS RWDGGAEK DFNA VAEIYQALNS+PTDVAALRRMAISEGGL
Sbjct: 1 MALRSARGDGPTSGRWDGGAEKGDFNAKRKKKVAEIYQALNSEPTDVAALRRMAISEGGL 60
Query: 345 LTDEIRRKVWPKLLNVNTSDPPPTSGKNLRQLSKDYQQVLLDVRRSLRRFPPGMPEEQRX 524
LTDEIRRKVWPKLLNVNT+DPPP SGKNLRQ+SKDYQQVLLDVRRSLRRFPPGMPEEQR
Sbjct: 61 LTDEIRRKVWPKLLNVNTNDPPPISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQRE 120
Query: 525 XXXXXXXXXXXXXXXRNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP 704
RNPQLHYYQGYHDIVVTFLLV+GERLATSLVEKLSTHHLRDFMDP
Sbjct: 121 GLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVLGERLATSLVEKLSTHHLRDFMDP 180
Query: 705 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 884
TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD
Sbjct: 181 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 240
Query: 885 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 1064
FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV
Sbjct: 241 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 300
Query: 1065 QFPPSELXXXXXXXXXXXXXXXSTFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT 1244
QFPPSEL STFKDFELASAQQRPDMVLRQRFRGLLRP++RTKDVLT
Sbjct: 301 QFPPSELAREAAAQPQAEKTAASTFKDFELASAQQRPDMVLRQRFRGLLRPDERTKDVLT 360
Query: 1245 KPRTNRFVKXXXXXXXXXXXXXXXXXXXXXXEWAPKFQLQLFP 1373
KPRTNRFVK EWAPKFQLQLFP
Sbjct: 361 KPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP 403
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 75,771,554
Number of extensions: 2057021
Number of successful extensions: 7446
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7438
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 596
Effective length of database: 14,074,782
Effective search space: 8388570072
Effective search space used: 8388570072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007997
(2115 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542941.2| PREDICTED: similar to TBC1 domain family, membe... 654 0.0
Alignment gi|XP_861902.1| PREDICTED: similar to TBC1 domain family, membe... 635 0.0
Alignment gi|XP_861927.1| PREDICTED: similar to TBC1 domain family, membe... 570 e-162
>ref|XP_542941.2| PREDICTED: similar to TBC1 domain family, member 20 isoform 2 [Canis
familiaris].
Length = 403
Score = 654 bits (1687), Expect = 0.0
Identities = 330/403 (81%), Positives = 338/403 (83%)
Frame = +3
Query: 165 MALRSAQGDGPTSPRWDGGAEKADFNAXXXXXVAEIYQALNSDPTDVAALRRMAISEGGL 344
MALRSAQGDGPTS RWD GAEK DFNA VAEIYQALNSDPTDVAALRRMAISEGGL
Sbjct: 1 MALRSAQGDGPTSSRWDCGAEKTDFNAKKKKKVAEIYQALNSDPTDVAALRRMAISEGGL 60
Query: 345 LTDEIRRKVWPKLLNVNTSDPPPTSGKNLRQLSKDYQQVLLDVRRSLRRFPPGMPEEQRX 524
LTDEIR++VWPKLLNVNT+DPPP S +NLRQ+SKDYQQVLLDVRRSLRRFPPGMPE+QR
Sbjct: 61 LTDEIRQEVWPKLLNVNTNDPPPVSEENLRQVSKDYQQVLLDVRRSLRRFPPGMPEKQRE 120
Query: 525 XXXXXXXXXXXXXXXRNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP 704
RNPQLHYYQGYHDIVVTFLLVVGERL TSLVEKLSTHHLRDFMDP
Sbjct: 121 GLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLTTSLVEKLSTHHLRDFMDP 180
Query: 705 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 884
TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD
Sbjct: 181 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 240
Query: 885 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 1064
FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV
Sbjct: 241 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 300
Query: 1065 QFPPSELXXXXXXXXXXXXXXXSTFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT 1244
QFPPSEL STFKDFELASAQQRPDMVLRQRFRGL+R E+RTKDVLT
Sbjct: 301 QFPPSELARKAAAQQQAEKTAASTFKDFELASAQQRPDMVLRQRFRGLMRSEERTKDVLT 360
Query: 1245 KPRTNRFVKXXXXXXXXXXXXXXXXXXXXXXEWAPKFQLQLFP 1373
KPRTNRFVK EWAPKFQLQLFP
Sbjct: 361 KPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP 403
>ref|XP_861902.1| PREDICTED: similar to TBC1 domain family, member 20 isoform 3 [Canis
familiaris].
Length = 440
Score = 635 bits (1639), Expect = 0.0
Identities = 330/440 (75%), Positives = 338/440 (76%), Gaps = 37/440 (8%)
Frame = +3
Query: 165 MALRSAQGDGPTSPRWDGGAEKADFNAXXXXXVAEIYQALNSDPTDVAALRRMAISEGGL 344
MALRSAQGDGPTS RWD GAEK DFNA VAEIYQALNSDPTDVAALRRMAISEGGL
Sbjct: 1 MALRSAQGDGPTSSRWDCGAEKTDFNAKKKKKVAEIYQALNSDPTDVAALRRMAISEGGL 60
Query: 345 LTDEIRRKVWPKLLNVNTSDPPPTSGKNLRQLSKDYQQVLLDVRRSLRRFPPGMPEEQRX 524
LTDEIR++VWPKLLNVNT+DPPP S +NLRQ+SKDYQQVLLDVRRSLRRFPPGMPE+QR
Sbjct: 61 LTDEIRQEVWPKLLNVNTNDPPPVSEENLRQVSKDYQQVLLDVRRSLRRFPPGMPEKQRE 120
Query: 525 XXXXXXXXXXXXXXXRNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP 704
RNPQLHYYQGYHDIVVTFLLVVGERL TSLVEKLSTHHLRDFMDP
Sbjct: 121 GLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLTTSLVEKLSTHHLRDFMDP 180
Query: 705 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 884
TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD
Sbjct: 181 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 240
Query: 885 FFLACHPLMPIYFAAV-------------------------------------IVLYREQ 953
FFLACHPLMPIYFAAV IVLYREQ
Sbjct: 241 FFLACHPLMPIYFAAVVEFAVCYQFKFISKENDMQAVKAVCVLVSDTRPCSPQIVLYREQ 300
Query: 954 EVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPPSELXXXXXXXXXXXXXXXS 1133
EVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPPSEL S
Sbjct: 301 EVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQFPPSELARKAAAQQQAEKTAAS 360
Query: 1134 TFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLTKPRTNRFVKXXXXXXXXXXXXXX 1313
TFKDFELASAQQRPDMVLRQRFRGL+R E+RTKDVLTKPRTNRFVK
Sbjct: 361 TFKDFELASAQQRPDMVLRQRFRGLMRSEERTKDVLTKPRTNRFVKLAVMGLTVALGAAA 420
Query: 1314 XXXXXXXXEWAPKFQLQLFP 1373
EWAPKFQLQLFP
Sbjct: 421 LAVVKSALEWAPKFQLQLFP 440
>ref|XP_861927.1| PREDICTED: similar to TBC1 domain family, member 20 isoform 4 [Canis
familiaris].
Length = 351
Score = 570 bits (1470), Expect = e-162
Identities = 286/351 (81%), Positives = 294/351 (83%)
Frame = +3
Query: 321 MAISEGGLLTDEIRRKVWPKLLNVNTSDPPPTSGKNLRQLSKDYQQVLLDVRRSLRRFPP 500
MAISEGGLLTDEIR++VWPKLLNVNT+DPPP S +NLRQ+SKDYQQVLLDVRRSLRRFPP
Sbjct: 1 MAISEGGLLTDEIRQEVWPKLLNVNTNDPPPVSEENLRQVSKDYQQVLLDVRRSLRRFPP 60
Query: 501 GMPEEQRXXXXXXXXXXXXXXXXRNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTH 680
GMPE+QR RNPQLHYYQGYHDIVVTFLLVVGERL TSLVEKLSTH
Sbjct: 61 GMPEKQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLTTSLVEKLSTH 120
Query: 681 HLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDF 860
HLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDF
Sbjct: 121 HLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDF 180
Query: 861 RHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLI 1040
RHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLI
Sbjct: 181 RHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLI 240
Query: 1041 SRAGDLFVQFPPSELXXXXXXXXXXXXXXXSTFKDFELASAQQRPDMVLRQRFRGLLRPE 1220
SRAGDLFVQFPPSEL STFKDFELASAQQRPDMVLRQRFRGL+R E
Sbjct: 241 SRAGDLFVQFPPSELARKAAAQQQAEKTAASTFKDFELASAQQRPDMVLRQRFRGLMRSE 300
Query: 1221 DRTKDVLTKPRTNRFVKXXXXXXXXXXXXXXXXXXXXXXEWAPKFQLQLFP 1373
+RTKDVLTKPRTNRFVK EWAPKFQLQLFP
Sbjct: 301 ERTKDVLTKPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP 351
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 78,923,269
Number of extensions: 2090189
Number of successful extensions: 7751
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7729
Number of HSP's successfully gapped: 4
Length of query: 705
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 595
Effective length of database: 15,207,544
Effective search space: 9048488680
Effective search space used: 9048488680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007997
(2115 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 49,240,124
Number of extensions: 1375568
Number of successful extensions: 4877
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4868
Number of HSP's successfully gapped: 0
Length of query: 705
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 599
Effective length of database: 8,704,850
Effective search space: 5214205150
Effective search space used: 5214205150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007997
(2115 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077158.1| TBC1 domain family member 20 [Mus musculus]. 628 e-180
>ref|NP_077158.1| TBC1 domain family member 20 [Mus musculus].
Length = 402
Score = 628 bits (1619), Expect = e-180
Identities = 320/403 (79%), Positives = 332/403 (82%)
Frame = +3
Query: 165 MALRSAQGDGPTSPRWDGGAEKADFNAXXXXXVAEIYQALNSDPTDVAALRRMAISEGGL 344
MALR ++GDG ++ RWD GA KADFNA VAEI+QALNSDP D+AALRRMAISEGGL
Sbjct: 1 MALRPSKGDG-SAGRWDRGAGKADFNAKRKKKVAEIHQALNSDPIDLAALRRMAISEGGL 59
Query: 345 LTDEIRRKVWPKLLNVNTSDPPPTSGKNLRQLSKDYQQVLLDVRRSLRRFPPGMPEEQRX 524
LTDEIR +VWPKLLNVNTS+PPP S K+LR +SKDYQQVLLDVRRSLRRFPPGMP+EQR
Sbjct: 60 LTDEIRCQVWPKLLNVNTSEPPPVSRKDLRDMSKDYQQVLLDVRRSLRRFPPGMPDEQRE 119
Query: 525 XXXXXXXXXXXXXXXRNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP 704
RNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP
Sbjct: 120 GLQEELIDIILLVLDRNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP 179
Query: 705 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 884
TMDNTKHILNYLMPIIDQV+PELHDFMQSAEVGTIFALSWLITWFGHVL DFRHVVRLYD
Sbjct: 180 TMDNTKHILNYLMPIIDQVSPELHDFMQSAEVGTIFALSWLITWFGHVLMDFRHVVRLYD 239
Query: 885 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 1064
FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV
Sbjct: 240 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 299
Query: 1065 QFPPSELXXXXXXXXXXXXXXXSTFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT 1244
QFPPSEL STFKDFELAS QQRPDMVLRQRFRGLLRPE RTKDVLT
Sbjct: 300 QFPPSELAREAAAQQEAERTAASTFKDFELASTQQRPDMVLRQRFRGLLRPEARTKDVLT 359
Query: 1245 KPRTNRFVKXXXXXXXXXXXXXXXXXXXXXXEWAPKFQLQLFP 1373
KPRTNRFVK EWAPKFQLQLFP
Sbjct: 360 KPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP 402
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,221,915
Number of extensions: 1696493
Number of successful extensions: 6030
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6016
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 597
Effective length of database: 12,373,671
Effective search space: 7387081587
Effective search space used: 7387081587
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007997
(2115 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653229.1| TBC1 domain family member 20 [Homo sapiens]. 669 0.0
>ref|NP_653229.1| TBC1 domain family member 20 [Homo sapiens].
Length = 403
Score = 669 bits (1726), Expect = 0.0
Identities = 338/403 (83%), Positives = 341/403 (84%)
Frame = +3
Query: 165 MALRSAQGDGPTSPRWDGGAEKADFNAXXXXXVAEIYQALNSDPTDVAALRRMAISEGGL 344
MALRSAQGDGPTS WDGGAEKADFNA VAEI+QALNSDPTDVAALRRMAISEGGL
Sbjct: 1 MALRSAQGDGPTSGHWDGGAEKADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGL 60
Query: 345 LTDEIRRKVWPKLLNVNTSDPPPTSGKNLRQLSKDYQQVLLDVRRSLRRFPPGMPEEQRX 524
LTDEIRRKVWPKLLNVN +DPPP SGKNLRQ+SKDYQQVLLDVRRSLRRFPPGMPEEQR
Sbjct: 61 LTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQRE 120
Query: 525 XXXXXXXXXXXXXXXRNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP 704
RNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP
Sbjct: 121 GLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP 180
Query: 705 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 884
TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD
Sbjct: 181 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD 240
Query: 885 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 1064
FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV
Sbjct: 241 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 300
Query: 1065 QFPPSELXXXXXXXXXXXXXXXSTFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT 1244
QFPPSEL STFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT
Sbjct: 301 QFPPSELAREAAAQQQAERTAASTFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT 360
Query: 1245 KPRTNRFVKXXXXXXXXXXXXXXXXXXXXXXEWAPKFQLQLFP 1373
KPRTNRFVK EWAPKFQLQLFP
Sbjct: 361 KPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP 403
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 77,276,732
Number of extensions: 2039679
Number of successful extensions: 7176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7167
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 595
Effective length of database: 14,671,124
Effective search space: 8729318780
Effective search space used: 8729318780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007997
(2115 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1679 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1679 bits (847), Expect = 0.0
Identities = 973/1005 (96%), Gaps = 10/1005 (0%)
Strand = Plus / Minus
Query: 1119 agaacggcagcctctaccttcaaagactttgagctggcatcagcccagcagaggcctgac 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586821 agaacggcagcctctaccttcaaagactttgagctggcatcagcccagcagaggcctgac 39586762
Query: 1179 atggtgctgaggcagcggtttcggggacttctgcggcctgaggatcgaacaaaagatgtc 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586761 atggtgctgaggcagcggtttcggggacttctgcggcctgaggatcgaacaaaagatgtc 39586702
Query: 1239 ctgaccaaaccaaggaccaaccgctttgtgaagctggcggtgatggggctgacggtggca 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586701 ctgaccaaaccaaggaccaaccgctttgtgaagctggcggtgatggggctgacggtggca 39586642
Query: 1299 cttggagcggctgctctggctgtggtgaagagtgccctggagtgggccccaaagtttcaa 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586641 cttggagcggctgctctggctgtggtgaagagtgccctggagtgggccccaaagtttcaa 39586582
Query: 1359 ctgcagctgtttccctaaatgccagagaagacacttcctctaacatgacatcaaggtctc 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586581 ctgcagctgtttccctaaatgccagagaagacacttcctctaacatgacatcaaggtctc 39586522
Query: 1419 acccttccatggaccgactgggagggggtggaatttcctttattaaaagggtttctgtcg 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586521 acccttccatggaccgactgggagggggtggaatttcctttattaaaagggtttctgtcg 39586462
Query: 1479 agggttttctattcctgccacccttccccccaccccatccatggttgcctttgcttcaga 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586461 agggttttctattcctgccacccttccccccaccccatccatggttgcctttgcttcaga 39586402
Query: 1539 ggccaattgcagagcctgtgtgacgcgggcacctgggggcctgagcacagaactctttct 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586401 ggccaattgcagagcctgtgtgacgcgggcacctgggggcctgagcacagaactctttct 39586342
Query: 1599 cactcacagtgggcttctgagcgggcgctccacggcctcctcttgtattggagggaatgg 1658
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 39586341 cactcacagtgggcttctgagcgggcgctccacggactcctcttgtattggagggaatgg 39586282
Query: 1659 gtttctgtagctcacagctgcctttggaacccactgggcctggtcaccggggggcatctt 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586281 gtttctgtagctcacagctgcctttggaacccactgggcctggtcaccggggggcatctt 39586222
Query: 1719 agctggaccactgaatgcccttctggcggctccttctatccgtcctgtctgcttcagctg 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586221 agctggaccactgaatgcccttctggcggctccttctatccgtcctgtctgcttcagctg 39586162
Query: 1779 gacaaagaagtcagaccttggagtgaaggcgagggggcagaggagactagcccgggagca 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586161 gacaaagaagtcagaccttggagtgaaggcgagggggcagaggagactagcccgggagca 39586102
Query: 1839 agattcgccccttctgagaatagctccactagctggtcagaaatctgagcgacatatgtg 1898
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 39586101 agattggccccttctgagaatagctccactagctggtcagaaatctaagcgacatatgtg 39586042
Query: 1899 aactaggttactcggttaatcttattttcagcctagaactcacttgggtgtttccagtca 1958
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39586041 aactaggttactcggtaaatcttattttcagcctagaactcacttgggtgtttccagtca 39585982
Query: 1959 gaacaaaaggaatgggttag-tttagggcccagacatcagctgggctttgcc-nnnnnnn 2016
|| ||||||||| | || ||||||||||||||||||||| |||||||||
Sbjct: 39585981 gacaaaaaggaat-tttaagttttagggcccagacatcagct-ggctttgcctttttttt 39585924
Query: 2017 nncttt-cnattct-cttcca-caag-cacaacatgatgcttataaaagac-cttttact 2071
|||| | ||||| |||||| |||| |||| |||||||||||||||||| ||||||||
Sbjct: 39585923 ttctttactattctgcttccagcaagccacacaatgatgcttataaaagacacttttact 39585864
Query: 2072 actatttttagaactac-tacatccaacatgtaaagggctactat 2115
||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 39585863 actatttttagaactacatacatccaacatgtaaagtgctactat 39585819
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 45 tgaccaagccgagcttggcccgcggagccggcgccgaatcccgcggcctcagctgcagcc 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39566751 tgaccaagccgagcttggcccgcggagccggcgccgaatcccgcggcctcagctgcagcc 39566810
Query: 105 gcgccttctctctgctccgccaccagccggggctcgggccggtgcccgggcccccgggac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39566811 gcgccttctctctgctccgccaccagccggggctcgggccggtgcccgggcccccgggac 39566870
Query: 165 atggccctccggagtgcgcagggtgacggccccacgtctcctcgctgggacggcggcgcg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39566871 atggccctccggagtgcgcagggtgacggccccacgtctcctcgctgggacggcggcgcg 39566930
Query: 225 gagaaggcag 234
||||||||||
Sbjct: 39566931 gagaaggcag 39566940
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 932 gatcgtgttgtatcgagagcaggaagtcctggactgtgactgtgacatggcctcggtcca 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39587273 gatcgtgttgtatcgagagcaggaagtcctggactgtgactgtgacatggcctcggtcca 39587214
Query: 992 ccacctgttgtcccagatccctcaggacctgccctatgagacgctgatcagtagagcagg 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39587213 ccacctgttgtcccagatccctcaggacctgccctatgagacgctgatcagtagagcagg 39587154
Query: 1052 agacctctttgtgcagtttcccccgtccgaacttgctcgggaggcagctgcccagcagca 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39587153 agacctctttgtgcagtttcccccgtccgaacttgctcgggaggcagctgcccagcagca 39587094
Query: 1112 ggccgagag 1120
|||||||||
Sbjct: 39587093 ggccgagag 39587085
Score = 178 bits (90), Expect = 8e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 843 cacgtcctgtcagacttcaggcacgtcgtgcggttatacgacttcttcctggcctgccac 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39588318 cacgtcctgtcagacttcaggcacgtcgtgcggttatacgacttcttcctggcctgccac 39588259
Query: 903 ccgctgatgcccatttactttgcagctgtg 932
||||||||||||||||||||||||||||||
Sbjct: 39588258 ccgctgatgcccatttactttgcagctgtg 39588229
Score = 174 bits (88), Expect = 1e-40
Identities = 100/104 (96%)
Strand = Plus / Minus
Query: 687 agggatttcatggacccaacaatggacaacaccaagcatatattaaactatctgatgccc 746
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct: 39589671 agggatttcatggacccaactatggacaacaccacgcttatattaaactatctgatgccc 39589612
Query: 747 atcattgaccaggtgaatccagaactccatgacttcatgcagag 790
|||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 39589611 atcattgaccaggtgaatcctgaactccatgacttcatgcagag 39589568
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,638,698
Number of extensions: 927
Number of successful extensions: 927
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 6
Length of query: 2115
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2093
Effective length of database: 2,808,408,574
Effective search space: 5877999145382
Effective search space used: 5877999145382
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)