Animal-Genome cDNA 20110601C-008002

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008002
         (1544 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014935.2| cyclin-dependent kinase 9 [Bos taurus].           754   0.0  
Alignment   gi|NP_001192630.1| cyclin-dependent kinase 12 [Bos taurus].          292   5e-79
Alignment   gi|XP_002696004.1| PREDICTED: cell division cycle 2-related pro...   292   5e-79
Alignment   gi|XP_002696003.1| PREDICTED: cell division cycle 2-related pro...   292   5e-79
Alignment   gi|XP_002702230.1| PREDICTED: cell division cycle 2-related pro...   292   5e-79
Alignment   gi|NP_001193551.1| cyclin-dependent kinase 13 isoform 2 [Bos ta...   291   8e-79
Alignment   gi|NP_001192360.1| cyclin-dependent kinase 13 isoform 1 [Bos ta...   291   8e-79
Alignment   gi|NP_001033666.1| cyclin-dependent kinase 10 [Bos taurus].          231   1e-60
Alignment   gi|XP_001251816.1| PREDICTED: cell division protein kinase 10-l...   231   1e-60
Alignment   gi|NP_001007812.2| cyclin-dependent kinase 11B [Bos taurus].         229   7e-60

>ref|NP_001014935.2| cyclin-dependent kinase 9 [Bos taurus].
          Length = 372

 Score =  754 bits (1947), Expect = 0.0
 Identities = 371/372 (99%), Positives = 372/372 (100%)
 Frame = +3

Query: 126  MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP 305
            MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP
Sbjct: 1    MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP 60

Query: 306  ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 485
            ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK
Sbjct: 61   ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 120

Query: 486  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 665
            FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS
Sbjct: 121  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 180

Query: 666  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 845
            QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL
Sbjct: 181  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 240

Query: 846  ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 1025
            ISQLCGSITPEVWPNVDKYELFEK+ELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP
Sbjct: 241  ISQLCGSITPEVWPNVDKYELFEKVELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 300

Query: 1026 AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 1205
            AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP
Sbjct: 301  AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 360

Query: 1206 ATTNQTEFERVF 1241
            ATTNQTEFERVF
Sbjct: 361  ATTNQTEFERVF 372


>ref|NP_001192630.1| cyclin-dependent kinase 12 [Bos taurus].
          Length = 1490

 Score =  292 bits (748), Expect = 5e-79
 Identities = 149/301 (49%), Positives = 207/301 (68%), Gaps = 2/301 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 F 1067
            F
Sbjct: 1019 F 1019


>ref|XP_002696004.1| PREDICTED: cell division cycle 2-related protein kinase 7-like
            isoform 2 [Bos taurus].
          Length = 1490

 Score =  292 bits (748), Expect = 5e-79
 Identities = 149/301 (49%), Positives = 207/301 (68%), Gaps = 2/301 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 F 1067
            F
Sbjct: 1019 F 1019


>ref|XP_002696003.1| PREDICTED: cell division cycle 2-related protein kinase 7-like
            isoform 1 [Bos taurus].
          Length = 1481

 Score =  292 bits (748), Expect = 5e-79
 Identities = 149/301 (49%), Positives = 207/301 (68%), Gaps = 2/301 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 F 1067
            F
Sbjct: 1019 F 1019


>ref|XP_002702230.1| PREDICTED: cell division cycle 2-related protein kinase 7-like [Bos
            taurus].
          Length = 1481

 Score =  292 bits (748), Expect = 5e-79
 Identities = 149/301 (49%), Positives = 207/301 (68%), Gaps = 2/301 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 F 1067
            F
Sbjct: 1019 F 1019


>ref|NP_001193551.1| cyclin-dependent kinase 13 isoform 2 [Bos taurus].
          Length = 1452

 Score =  291 bits (746), Expect = 8e-79
 Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 3/312 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KA+ + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 703  VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTH 762

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++++N+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F  + IK  M+ L
Sbjct: 763  QSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQL 822

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR +S ++ S+P  YTN+V+TLW
Sbjct: 823  MEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYS-SEESRP--YTNKVITLW 879

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS++CGS  P VW
Sbjct: 880  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVW 939

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDP-YALDLIDKLLVLDPAQRIDSDDALNH 1061
            P+V K   F  ++  K  +RK+++    +V  P  ALDL D +L LDP++R  ++ AL  
Sbjct: 940  PDVIKLPYFNTMKPKKQYRRKLREE---FVFIPAAALDLFDYMLALDPSKRCTAEQALQC 996

Query: 1062 DFFWSDPMPSDL 1097
            +F   D  PS +
Sbjct: 997  EFL-RDVEPSKM 1007


>ref|NP_001192360.1| cyclin-dependent kinase 13 isoform 1 [Bos taurus].
          Length = 1512

 Score =  291 bits (746), Expect = 8e-79
 Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 3/312 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KA+ + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 703  VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTH 762

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++++N+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F  + IK  M+ L
Sbjct: 763  QSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQL 822

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR +S ++ S+P  YTN+V+TLW
Sbjct: 823  MEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYS-SEESRP--YTNKVITLW 879

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS++CGS  P VW
Sbjct: 880  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVW 939

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDP-YALDLIDKLLVLDPAQRIDSDDALNH 1061
            P+V K   F  ++  K  +RK+++    +V  P  ALDL D +L LDP++R  ++ AL  
Sbjct: 940  PDVIKLPYFNTMKPKKQYRRKLREE---FVFIPAAALDLFDYMLALDPSKRCTAEQALQC 996

Query: 1062 DFFWSDPMPSDL 1097
            +F   D  PS +
Sbjct: 997  EFL-RDVEPSKM 1007


>ref|NP_001033666.1| cyclin-dependent kinase 10 [Bos taurus].
          Length = 361

 Score =  231 bits (589), Expect = 1e-60
 Identities = 124/311 (39%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V ++EKL +IG+GT+G V++A+   T + VALKKV M+ EK+G PI++LREI +L  
Sbjct: 31   CRSVKEFEKLNRIGEGTYGIVYRARDTHTDEIVALKKVRMDKEKDGVPISSLREITLLLR 90

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
            L+H N+V L E+             SI+LV  +CE DLA LL N+   F+ +++K ++  
Sbjct: 91   LRHPNIVELKEVV------VGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQVKCIVLQ 144

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            +L GL Y+HRN I+HRD+K +N+L+T  G +K ADFGLARA+ +         T +VVTL
Sbjct: 145  VLRGLQYLHRNFIIHRDLKVSNLLMTDKGCVKTADFGLARAYGIPVKPM----TPKVVTL 200

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG       ID+W  GCI+AE+    P++ G +E HQ+ LI QL G+ +  +
Sbjct: 201  WYRAPELLLGTTTQTTSIDMWAVGCILAELLAHKPLLPGTSEIHQVDLIVQLLGTPSENI 260

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +  L  +  L K     +K +          L L++ L + DP +R  + D L  
Sbjct: 261  WPGFSQLPLASQYSLRKQPYNNLKHKFPWL--SEAGLRLMNLLFMYDPKKRATAGDCLES 318

Query: 1062 DFFWSDPMPSD 1094
             +F   P+P +
Sbjct: 319  SYFKEKPLPCE 329


>ref|XP_001251816.1| PREDICTED: cell division protein kinase 10-like [Bos taurus].
          Length = 361

 Score =  231 bits (589), Expect = 1e-60
 Identities = 124/311 (39%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V ++EKL +IG+GT+G V++A+   T + VALKKV M+ EK+G PI++LREI +L  
Sbjct: 31   CRSVKEFEKLNRIGEGTYGIVYRARDTHTDEIVALKKVRMDKEKDGVPISSLREITLLLR 90

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
            L+H N+V L E+             SI+LV  +CE DLA LL N+   F+ +++K ++  
Sbjct: 91   LRHPNIVELKEVV------VGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQVKCIVLQ 144

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            +L GL Y+HRN I+HRD+K +N+L+T  G +K ADFGLARA+ +         T +VVTL
Sbjct: 145  VLRGLQYLHRNFIIHRDLKVSNLLMTDKGCVKTADFGLARAYGIPVKPM----TPKVVTL 200

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG       ID+W  GCI+AE+    P++ G +E HQ+ LI QL G+ +  +
Sbjct: 201  WYRAPELLLGTTTQTTSIDMWAVGCILAELLAHKPLLPGTSEIHQVDLIVQLLGTPSENI 260

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +  L  +  L K     +K +          L L++ L + DP +R  + D L  
Sbjct: 261  WPGFSQLPLASQYSLRKQPYNNLKHKFPWL--SEAGLRLMNLLFMYDPKKRATAGDCLES 318

Query: 1062 DFFWSDPMPSD 1094
             +F   P+P +
Sbjct: 319  SYFKEKPLPCE 329


>ref|NP_001007812.2| cyclin-dependent kinase 11B [Bos taurus].
          Length = 771

 Score =  229 bits (583), Expect = 7e-60
 Identities = 117/311 (37%), Positives = 184/311 (59%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 408  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 467

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 468  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 521

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVTL
Sbjct: 522  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYG----SPLKAYTPVVVTL 577

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  G +E  Q+  + +  G+ + ++
Sbjct: 578  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEIDQINKVFKDLGTPSEKI 637

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP  +     +K+   +     ++ R  A + D    DL++K L   P +R++++D L H
Sbjct: 638  WPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRVNAEDGLKH 696

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 697  EYFRETPLPID 707


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,375,874
Number of extensions: 1667034
Number of successful extensions: 9741
Number of sequences better than 1.0e-05: 577
Number of HSP's gapped: 8751
Number of HSP's successfully gapped: 604
Length of query: 514
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,140,958
Effective search space: 5755369906
Effective search space used: 5755369906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008002
         (1544 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_548446.2| PREDICTED: similar to cyclin-dependent kinase 9...   764   0.0  
Alignment   gi|XP_863951.1| PREDICTED: similar to CDC2-related kinase 7 iso...   295   6e-80
Alignment   gi|XP_863931.1| PREDICTED: similar to Cell division cycle 2-rel...   295   6e-80
Alignment   gi|XP_548147.2| PREDICTED: similar to Cell division cycle 2-rel...   295   6e-80
Alignment   gi|XP_533082.2| PREDICTED: similar to Cell division cycle 2-lik...   291   9e-79
Alignment   gi|XP_863909.1| PREDICTED: similar to Cell division cycle 2-rel...   291   2e-78
Alignment   gi|XP_863887.1| PREDICTED: similar to Cell division cycle 2-rel...   284   1e-76
Alignment   gi|XP_546775.1| PREDICTED: similar to Cell division protein kin...   230   2e-60
Alignment   gi|XP_546711.2| PREDICTED: similar to cell division cycle 2-lik...   228   9e-60
Alignment   gi|XP_857068.1| PREDICTED: similar to cell division cycle 2-lik...   228   9e-60

>ref|XP_548446.2| PREDICTED: similar to cyclin-dependent kinase 9 [Canis familiaris].
          Length = 534

 Score =  764 bits (1974), Expect = 0.0
 Identities = 381/399 (95%), Positives = 385/399 (96%), Gaps = 1/399 (0%)
 Frame = +3

Query: 48   STAAGPGAGXXXXXXXXXXXXX-LEAAMAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEV 224
            STAAGPGAG              LEAAMAKQYDSVECPFCDEV+KYEKLAKIGQGTFGEV
Sbjct: 136  STAAGPGAGAAAAAAAGGGGGGALEAAMAKQYDSVECPFCDEVSKYEKLAKIGQGTFGEV 195

Query: 225  FKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN 404
            FKAKHRKTG+KVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN
Sbjct: 196  FKAKHRKTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYN 255

Query: 405  RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAA 584
            RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIK+VMQMLLNGLYYIHRNKILHRDMKAA
Sbjct: 256  RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKKVMQMLLNGLYYIHRNKILHRDMKAA 315

Query: 585  NVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLW 764
            NVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLW
Sbjct: 316  NVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLW 375

Query: 765  GAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDKYELFEKLELVKGQKR 944
            GAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDKYELFEKL+LVKGQKR
Sbjct: 376  GAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDKYELFEKLDLVKGQKR 435

Query: 945  KVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLT 1124
            KVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLT
Sbjct: 436  KVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLT 495

Query: 1125 SMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF 1241
            SMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF
Sbjct: 496  SMFEYLAPPRRKGSQITQQSTNQSRNPATTNQTEFERVF 534


>ref|XP_863951.1| PREDICTED: similar to CDC2-related kinase 7 isoform 6 [Canis
            familiaris].
          Length = 1262

 Score =  295 bits (756), Expect = 6e-80
 Identities = 163/362 (45%), Positives = 228/362 (62%), Gaps = 6/362 (1%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 FFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQTEFE 1232
            F   D   S +      H     E  +  RR+    G  I +   ++S    TT+ T  E
Sbjct: 1019 FL-KDVELSKMDPPDLPHWQDCHELWSKKRRRQRQSGVVIEEPPPSKSSRKETTSGTSVE 1077

Query: 1233 RV 1238
             V
Sbjct: 1078 PV 1079


>ref|XP_863931.1| PREDICTED: similar to Cell division cycle 2-related protein kinase 7
            (CDC2-related protein kinase 7) (CrkRS) isoform 5 [Canis
            familiaris].
          Length = 790

 Score =  295 bits (756), Expect = 6e-80
 Identities = 163/362 (45%), Positives = 228/362 (62%), Gaps = 6/362 (1%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 24   VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 83

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 84   RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 143

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 144  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 200

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 201  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 260

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 261  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 318

Query: 1065 FFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQTEFE 1232
            F   D   S +      H     E  +  RR+    G  I +   ++S    TT+ T  E
Sbjct: 319  FL-KDVELSKMDPPDLPHWQDCHELWSKKRRRQRQSGVVIEEPPPSKSSRKETTSGTSVE 377

Query: 1233 RV 1238
             V
Sbjct: 378  PV 379


>ref|XP_548147.2| PREDICTED: similar to Cell division cycle 2-related protein kinase 7
            (CDC2-related protein kinase 7) (CrkRS) isoform 1 [Canis
            familiaris].
          Length = 1490

 Score =  295 bits (756), Expect = 6e-80
 Identities = 163/362 (45%), Positives = 228/362 (62%), Gaps = 6/362 (1%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 FFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQTEFE 1232
            F   D   S +      H     E  +  RR+    G  I +   ++S    TT+ T  E
Sbjct: 1019 FL-KDVELSKMDPPDLPHWQDCHELWSKKRRRQRQSGVVIEEPPPSKSSRKETTSGTSVE 1077

Query: 1233 RV 1238
             V
Sbjct: 1078 PV 1079


>ref|XP_533082.2| PREDICTED: similar to Cell division cycle 2-like protein kinase 5
            (CDC2-related protein kinase 5) (Cholinesterase-related
            cell division controller) [Canis familiaris].
          Length = 1377

 Score =  291 bits (746), Expect = 9e-79
 Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 3/312 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KA+ + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 568  VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTH 627

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++++N+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F  + IK  M+ L
Sbjct: 628  QSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQL 687

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR +S ++ S+P  YTN+V+TLW
Sbjct: 688  MEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYS-SEESRP--YTNKVITLW 744

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS++CGS  P VW
Sbjct: 745  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVW 804

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDP-YALDLIDKLLVLDPAQRIDSDDALNH 1061
            P+V K   F  ++  K  +RK+++    +V  P  ALDL D +L LDP++R  ++ AL  
Sbjct: 805  PDVIKLPYFNTMKPKKQYRRKLREE---FVFIPAAALDLFDYMLALDPSKRCTAEQALQC 861

Query: 1062 DFFWSDPMPSDL 1097
            +F   D  PS +
Sbjct: 862  EFL-RDVEPSKM 872


>ref|XP_863909.1| PREDICTED: similar to Cell division cycle 2-related protein kinase 7
            (CDC2-related protein kinase 7) (CrkRS) isoform 4 [Canis
            familiaris].
          Length = 1075

 Score =  291 bits (744), Expect = 2e-78
 Identities = 163/363 (44%), Positives = 225/363 (61%), Gaps = 7/363 (1%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 310  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 369

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 370  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 429

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNR-YTNRVVTL 701
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR   +     P+R YTN+V+TL
Sbjct: 430  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARHPGV-----PDRPYTNKVITL 484

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P V
Sbjct: 485  WYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAV 544

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  
Sbjct: 545  WPDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQS 602

Query: 1062 DFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQTEF 1229
            DF   D   S +      H     E  +  RR+    G  I +   ++S    TT+ T  
Sbjct: 603  DFL-KDVELSKMDPPDLPHWQDCHELWSKKRRRQRQSGVVIEEPPPSKSSRKETTSGTSV 661

Query: 1230 ERV 1238
            E V
Sbjct: 662  EPV 664


>ref|XP_863887.1| PREDICTED: similar to Cell division cycle 2-related protein kinase 7
            (CDC2-related protein kinase 7) (CrkRS) isoform 3 [Canis
            familiaris].
          Length = 1068

 Score =  284 bits (727), Expect = 1e-76
 Identities = 160/360 (44%), Positives = 224/360 (62%), Gaps = 4/360 (1%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 310  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 369

Query: 351  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLN 530
             +VVN+ EI    +     C  + YLVF++ +HDL GLL + LV F+   IK  M+ L+ 
Sbjct: 370  RSVVNMKEIIVIMSI----C--AFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLME 423

Query: 531  GLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYR 710
            GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLWYR
Sbjct: 424  GLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLWYR 480

Query: 711  PPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPN 890
            PPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VWP+
Sbjct: 481  PPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPD 540

Query: 891  VDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFF 1070
            V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  DF 
Sbjct: 541  VIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSDFL 598

Query: 1071 WSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQTEFERV 1238
              D   S +      H     E  +  RR+    G  I +   ++S    TT+ T  E V
Sbjct: 599  -KDVELSKMDPPDLPHWQDCHELWSKKRRRQRQSGVVIEEPPPSKSSRKETTSGTSVEPV 657


>ref|XP_546775.1| PREDICTED: similar to Cell division protein kinase 10
            (Serine/threonine-protein kinase PISSLRE) [Canis
            familiaris].
          Length = 360

 Score =  230 bits (587), Expect = 2e-60
 Identities = 124/311 (39%), Positives = 185/311 (59%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V ++EKL +IG+GT+G V++A+   T + VALKKV M+ EK+G PI++LREI +L  
Sbjct: 33   CRSVKEFEKLNRIGEGTYGIVYRARDTLTDEIVALKKVRMDKEKDGVPISSLREITLLLR 92

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
            L+H N+V L E+             SI+LV  +CE DLA LL N+   F+ +++K ++  
Sbjct: 93   LRHPNIVELKEVV------VGTHLESIFLVMGYCEQDLASLLENMPTPFSEAQVKCIVLQ 146

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            +L GL Y+H+N I+HRD+K +N+L+T  G +K ADFGLARA+S+         T +VVTL
Sbjct: 147  VLRGLQYLHQNFIIHRDLKVSNLLMTDKGCVKTADFGLARAYSIPMKPM----TPKVVTL 202

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG       ID+W  GCI+AE+    P++ G +E HQ+ LI QL G+ +  +
Sbjct: 203  WYRAPELLLGTSTQTTSIDMWAMGCILAELLAHKPLLPGTSEIHQVDLIVQLLGTPSENI 262

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +  L  +  L K     +K +          L L++ L + DP +R  + D L+ 
Sbjct: 263  WPGFSRLPLVGQYSLRKQPYNNLKHKFPWL--SEAGLRLLNFLFMYDPKKRATARDGLDS 320

Query: 1062 DFFWSDPMPSD 1094
             +F   P+P +
Sbjct: 321  SYFKEKPLPCE 331


>ref|XP_546711.2| PREDICTED: similar to cell division cycle 2-like 1 (PITSLRE proteins)
            isoform 2 isoform 1 [Canis familiaris].
          Length = 772

 Score =  228 bits (582), Expect = 9e-60
 Identities = 117/311 (37%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 409  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 468

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 469  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 522

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVTL
Sbjct: 523  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYG----SPLKAYTPVVVTL 578

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  G +E  Q+  + +  G+ + ++
Sbjct: 579  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEIDQINKVFKDLGTPSEKI 638

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP  +     +K+   +     ++ R  A + D    DL++K L   P +R+ ++D L H
Sbjct: 639  WPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRVSAEDGLKH 697

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 698  EYFRETPLPID 708


>ref|XP_857068.1| PREDICTED: similar to cell division cycle 2-like 1 (PITSLRE proteins)
            isoform 1 isoform 8 [Canis familiaris].
          Length = 785

 Score =  228 bits (582), Expect = 9e-60
 Identities = 117/311 (37%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 422  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 481

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 482  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 535

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVTL
Sbjct: 536  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYG----SPLKAYTPVVVTL 591

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  G +E  Q+  + +  G+ + ++
Sbjct: 592  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEIDQINKVFKDLGTPSEKI 651

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP  +     +K+   +     ++ R  A + D    DL++K L   P +R+ ++D L H
Sbjct: 652  WPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRVSAEDGLKH 710

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 711  EYFRETPLPID 721


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,874,616
Number of extensions: 1702322
Number of successful extensions: 11058
Number of sequences better than 1.0e-05: 878
Number of HSP's gapped: 9480
Number of HSP's successfully gapped: 913
Length of query: 514
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 407
Effective length of database: 15,307,552
Effective search space: 6230173664
Effective search space used: 6230173664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008002
         (1544 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001159516.1| cell division protein kinase 9 [Sus scrofa].      755   0.0  
Alignment   gi|XP_003131553.1| PREDICTED: cyclin-dependent kinase 12 isofor...   292   3e-79
Alignment   gi|XP_003358110.1| PREDICTED: cyclin-dependent kinase 12 [Sus s...   292   3e-79
Alignment   gi|NP_001137176.1| cell division protein kinase 10 [Sus scrofa].     231   6e-61
Alignment   gi|XP_003356167.1| PREDICTED: cyclin-dependent kinase 11-like [...   227   1e-59
Alignment   gi|NP_001152776.1| cell division cycle 2 [Sus scrofa].               223   3e-58
Alignment   gi|XP_003135095.1| PREDICTED: cyclin-dependent kinase 16-like i...   220   2e-57
Alignment   gi|XP_003135094.1| PREDICTED: cyclin-dependent kinase 16-like i...   220   2e-57
Alignment   gi|XP_003135096.1| PREDICTED: cyclin-dependent kinase 16-like i...   220   2e-57
Alignment   gi|XP_003135093.1| PREDICTED: cyclin-dependent kinase 16-like i...   220   2e-57

>ref|NP_001159516.1| cell division protein kinase 9 [Sus scrofa].
          Length = 372

 Score =  755 bits (1950), Expect = 0.0
 Identities = 372/372 (100%), Positives = 372/372 (100%)
 Frame = +3

Query: 126  MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP 305
            MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP
Sbjct: 1    MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP 60

Query: 306  ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 485
            ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK
Sbjct: 61   ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 120

Query: 486  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 665
            FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS
Sbjct: 121  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 180

Query: 666  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 845
            QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL
Sbjct: 181  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 240

Query: 846  ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 1025
            ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP
Sbjct: 241  ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 300

Query: 1026 AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 1205
            AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP
Sbjct: 301  AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 360

Query: 1206 ATTNQTEFERVF 1241
            ATTNQTEFERVF
Sbjct: 361  ATTNQTEFERVF 372


>ref|XP_003131553.1| PREDICTED: cyclin-dependent kinase 12 isoform 2 [Sus scrofa].
          Length = 1492

 Score =  292 bits (748), Expect = 3e-79
 Identities = 149/301 (49%), Positives = 207/301 (68%), Gaps = 2/301 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 725  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 784

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 785  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 844

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 845  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 901

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 902  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 961

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 962  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1019

Query: 1065 F 1067
            F
Sbjct: 1020 F 1020


>ref|XP_003358110.1| PREDICTED: cyclin-dependent kinase 12 [Sus scrofa].
          Length = 1483

 Score =  292 bits (748), Expect = 3e-79
 Identities = 149/301 (49%), Positives = 207/301 (68%), Gaps = 2/301 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 725  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 784

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 785  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 844

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 845  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 901

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 902  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 961

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 962  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1019

Query: 1065 F 1067
            F
Sbjct: 1020 F 1020


>ref|NP_001137176.1| cell division protein kinase 10 [Sus scrofa].
          Length = 361

 Score =  231 bits (590), Expect = 6e-61
 Identities = 124/311 (39%), Positives = 185/311 (59%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V ++EKL +IG+GT+G V++A+  +T + VALKKV M+ EK+G PI++LREI +L  
Sbjct: 33   CRSVKEFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGVPISSLREITLLLR 92

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
            L+H N+V L E+             SI+LV  +CE DLA LL N+   F+ +++K ++  
Sbjct: 93   LRHPNIVELKEVV------VGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQVKCIVLQ 146

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            +L GL Y+H+N I+HRD+K +N+L+T  G +K ADFGLARA+     +     T +VVTL
Sbjct: 147  VLRGLQYLHQNFIIHRDLKVSNLLMTDKGCVKTADFGLARAY----GTPVKPMTPKVVTL 202

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG     P ID+W  GCI+AE+    P++ G +E HQ+ LI QL G+ +  +
Sbjct: 203  WYRAPELLLGSTMQTPSIDMWAVGCILAELLAHKPLLPGTSEIHQVDLIVQLLGTPSENI 262

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +  L  +  L K     +K +          L L++ L + DP +R  + D L  
Sbjct: 263  WPGFSQLPLVGQYSLRKQPYNNLKHKFPWL--SEAGLRLLNLLFMYDPKRRATAGDCLEG 320

Query: 1062 DFFWSDPMPSD 1094
             +F   P+P +
Sbjct: 321  SYFKEKPLPCE 331


>ref|XP_003356167.1| PREDICTED: cyclin-dependent kinase 11-like [Sus scrofa].
          Length = 783

 Score =  227 bits (579), Expect = 1e-59
 Identities = 116/311 (37%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 420  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 479

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 480  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 533

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVTL
Sbjct: 534  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREY----GSPLKAYTPVVVTL 589

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  G ++  Q+  + +  G+ + ++
Sbjct: 590  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKVFKDLGTPSEKI 649

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP  +     +K+   +     ++ R  A + D    DL++K L   P +R+ ++D L H
Sbjct: 650  WPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRVSAEDGLKH 708

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 709  EYFRETPLPID 719


>ref|NP_001152776.1| cell division cycle 2 [Sus scrofa].
          Length = 297

 Score =  223 bits (567), Expect = 3e-58
 Identities = 123/300 (41%), Positives = 180/300 (60%), Gaps = 3/300 (1%)
 Frame = +3

Query: 180  YEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 359
            Y K+ KIG+GT+G V+K +H+ TGQ VA+KK+ +E+E+EG P TA+REI +L+ L+H N+
Sbjct: 4    YTKIEKIGEGTYGVVYKGRHKTTGQVVAMKKIRLESEEEGVPSTAIREISLLKELRHPNI 63

Query: 360  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK--FTLSEIKRVMQMLLNG 533
            V+L ++    +         +YL+F+F   DL   L ++        S +K  +  +L G
Sbjct: 64   VSLQDVLMQDS--------RLYLIFEFLSMDLKKYLDSIPPGQFMDSSLVKSYLYQILQG 115

Query: 534  LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNR-YTNRVVTLWYR 710
            + + H  ++LHRD+K  N+LI   G +KLADFGLARAF +     P R YT+ VVTLWYR
Sbjct: 116  IVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGI-----PIRVYTHEVVTLWYR 170

Query: 711  PPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPN 890
             PE+LLG   Y  P+D+W  G I AE+ T+ P+  G++E  QL  I +  G+   EVWP 
Sbjct: 171  SPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPE 230

Query: 891  VDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFF 1070
            V+  + + K    K +   +   +K    D   LDL+ K+LV DPA+RI    ALNH +F
Sbjct: 231  VESLQDY-KNTFPKWKPGSLASHVKNL--DENGLDLLSKMLVYDPAKRISGKMALNHPYF 287


>ref|XP_003135095.1| PREDICTED: cyclin-dependent kinase 16-like isoform 2 [Sus scrofa].
          Length = 502

 Score =  220 bits (560), Expect = 2e-57
 Identities = 125/299 (41%), Positives = 173/299 (57%)
 Frame = +3

Query: 180  YEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 359
            Y KL K+G+GT+  V+K K + T   VALK++ +E+E EG P TA+RE+ +L+ LKH N+
Sbjct: 171  YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 229

Query: 360  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY 539
            V L +I  T+ S        + LVF++ + DL   L +      +  +K  +  LL GL 
Sbjct: 230  VTLHDIIHTEKS--------LTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLA 281

Query: 540  YIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 719
            Y HR K+LHRD+K  N+LI   G LKLADFGLARA S+   +    Y+N VVTLWYRPP+
Sbjct: 282  YCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT----YSNEVVTLWYRPPD 337

Query: 720  LLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDK 899
            +LLG  DY   ID+WG GCI  EM T  P+  G+T + QL  I ++ G+ T E WP +  
Sbjct: 338  ILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS 397

Query: 900  YELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS 1076
             E F+     K +   +     A   D    DL+ KLL  +   RI ++DA+ H FF S
Sbjct: 398  NEEFKTYNYPKYRAEALLSH--APRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLS 454


>ref|XP_003135094.1| PREDICTED: cyclin-dependent kinase 16-like isoform 1 [Sus scrofa].
          Length = 577

 Score =  220 bits (560), Expect = 2e-57
 Identities = 125/299 (41%), Positives = 173/299 (57%)
 Frame = +3

Query: 180  YEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 359
            Y KL K+G+GT+  V+K K + T   VALK++ +E+E EG P TA+RE+ +L+ LKH N+
Sbjct: 246  YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 304

Query: 360  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY 539
            V L +I  T+ S        + LVF++ + DL   L +      +  +K  +  LL GL 
Sbjct: 305  VTLHDIIHTEKS--------LTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLA 356

Query: 540  YIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 719
            Y HR K+LHRD+K  N+LI   G LKLADFGLARA S+   +    Y+N VVTLWYRPP+
Sbjct: 357  YCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT----YSNEVVTLWYRPPD 412

Query: 720  LLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDK 899
            +LLG  DY   ID+WG GCI  EM T  P+  G+T + QL  I ++ G+ T E WP +  
Sbjct: 413  ILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS 472

Query: 900  YELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS 1076
             E F+     K +   +     A   D    DL+ KLL  +   RI ++DA+ H FF S
Sbjct: 473  NEEFKTYNYPKYRAEALLSH--APRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLS 529


>ref|XP_003135096.1| PREDICTED: cyclin-dependent kinase 16-like isoform 3 [Sus scrofa].
          Length = 496

 Score =  220 bits (560), Expect = 2e-57
 Identities = 125/299 (41%), Positives = 173/299 (57%)
 Frame = +3

Query: 180  YEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 359
            Y KL K+G+GT+  V+K K + T   VALK++ +E+E EG P TA+RE+ +L+ LKH N+
Sbjct: 165  YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 223

Query: 360  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY 539
            V L +I  T+ S        + LVF++ + DL   L +      +  +K  +  LL GL 
Sbjct: 224  VTLHDIIHTEKS--------LTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLA 275

Query: 540  YIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 719
            Y HR K+LHRD+K  N+LI   G LKLADFGLARA S+   +    Y+N VVTLWYRPP+
Sbjct: 276  YCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT----YSNEVVTLWYRPPD 331

Query: 720  LLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDK 899
            +LLG  DY   ID+WG GCI  EM T  P+  G+T + QL  I ++ G+ T E WP +  
Sbjct: 332  ILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS 391

Query: 900  YELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS 1076
             E F+     K +   +     A   D    DL+ KLL  +   RI ++DA+ H FF S
Sbjct: 392  NEEFKTYNYPKYRAEALLSH--APRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLS 448


>ref|XP_003135093.1| PREDICTED: cyclin-dependent kinase 16-like isoform 3 [Sus scrofa].
          Length = 502

 Score =  220 bits (560), Expect = 2e-57
 Identities = 125/299 (41%), Positives = 173/299 (57%)
 Frame = +3

Query: 180  YEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 359
            Y KL K+G+GT+  V+K K + T   VALK++ +E+E EG P TA+RE+ +L+ LKH N+
Sbjct: 171  YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 229

Query: 360  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY 539
            V L +I  T+ S        + LVF++ + DL   L +      +  +K  +  LL GL 
Sbjct: 230  VTLHDIIHTEKS--------LTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLA 281

Query: 540  YIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 719
            Y HR K+LHRD+K  N+LI   G LKLADFGLARA S+   +    Y+N VVTLWYRPP+
Sbjct: 282  YCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT----YSNEVVTLWYRPPD 337

Query: 720  LLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDK 899
            +LLG  DY   ID+WG GCI  EM T  P+  G+T + QL  I ++ G+ T E WP +  
Sbjct: 338  ILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS 397

Query: 900  YELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS 1076
             E F+     K +   +     A   D    DL+ KLL  +   RI ++DA+ H FF S
Sbjct: 398  NEEFKTYNYPKYRAEALLSH--APRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLS 454


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,767,621
Number of extensions: 1126788
Number of successful extensions: 6616
Number of sequences better than 1.0e-05: 403
Number of HSP's gapped: 5970
Number of HSP's successfully gapped: 417
Length of query: 514
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 411
Effective length of database: 8,779,541
Effective search space: 3608391351
Effective search space used: 3608391351
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008002
         (1544 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_570930.1| cyclin-dependent kinase 9 [Mus musculus].            754   0.0  
Alignment   gi|NP_081228.2| cyclin-dependent kinase 12 isoform 3 [Mus muscu...   295   9e-80
Alignment   gi|NP_001103098.1| cyclin-dependent kinase 12 isoform 2 [Mus mu...   295   9e-80
Alignment   gi|NP_001103096.1| cyclin-dependent kinase 12 isoform 1 [Mus mu...   295   9e-80
Alignment   gi|NP_081394.1| cyclin-dependent kinase 13 isoform 2 [Mus muscu...   291   7e-79
Alignment   gi|NP_001074527.1| cyclin-dependent kinase 13 isoform 1 [Mus mu...   291   7e-79
Alignment   gi|NP_919428.1| cyclin-dependent kinase 10 isoform 1 [Mus muscu...   236   5e-62
Alignment   gi|NP_031687.2| cyclin-dependent kinase 11 [Mus musculus].           228   1e-59
Alignment   gi|NP_031685.2| cyclin-dependent kinase 1 [Mus musculus].            222   7e-58
Alignment   gi|NP_035179.1| cyclin-dependent kinase 16 [Mus musculus].           219   6e-57

>ref|NP_570930.1| cyclin-dependent kinase 9 [Mus musculus].
          Length = 372

 Score =  754 bits (1946), Expect = 0.0
 Identities = 371/372 (99%), Positives = 372/372 (100%)
 Frame = +3

Query: 126  MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP 305
            MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHR+TGQKVALKKVLMENEKEGFP
Sbjct: 1    MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRQTGQKVALKKVLMENEKEGFP 60

Query: 306  ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 485
            ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK
Sbjct: 61   ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 120

Query: 486  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 665
            FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS
Sbjct: 121  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 180

Query: 666  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 845
            QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL
Sbjct: 181  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 240

Query: 846  ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 1025
            ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP
Sbjct: 241  ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 300

Query: 1026 AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 1205
            AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP
Sbjct: 301  AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 360

Query: 1206 ATTNQTEFERVF 1241
            ATTNQTEFERVF
Sbjct: 361  ATTNQTEFERVF 372


>ref|NP_081228.2| cyclin-dependent kinase 12 isoform 3 [Mus musculus].
          Length = 1258

 Score =  295 bits (754), Expect = 9e-80
 Identities = 164/366 (44%), Positives = 229/366 (62%), Gaps = 10/366 (2%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 720  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVH 779

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 780  QSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 839

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 840  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 896

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 897  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 956

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 957  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1014

Query: 1065 FF----WSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQ 1220
            F      S   P DL      H     E  +  RR+    G  I     +++    TT+ 
Sbjct: 1015 FLKDVELSKMAPPDL-----PHWQDCHELWSKKRRRQRQSGIVIEDPPPSKASRKETTSG 1069

Query: 1221 TEFERV 1238
            T  E V
Sbjct: 1070 TTAEPV 1075


>ref|NP_001103098.1| cyclin-dependent kinase 12 isoform 2 [Mus musculus].
          Length = 1475

 Score =  295 bits (754), Expect = 9e-80
 Identities = 164/366 (44%), Positives = 229/366 (62%), Gaps = 10/366 (2%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 720  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVH 779

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 780  QSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 839

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 840  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 896

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 897  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 956

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 957  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1014

Query: 1065 FF----WSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQ 1220
            F      S   P DL      H     E  +  RR+    G  I     +++    TT+ 
Sbjct: 1015 FLKDVELSKMAPPDL-----PHWQDCHELWSKKRRRQRQSGIVIEDPPPSKASRKETTSG 1069

Query: 1221 TEFERV 1238
            T  E V
Sbjct: 1070 TTAEPV 1075


>ref|NP_001103096.1| cyclin-dependent kinase 12 isoform 1 [Mus musculus].
          Length = 1484

 Score =  295 bits (754), Expect = 9e-80
 Identities = 164/366 (44%), Positives = 229/366 (62%), Gaps = 10/366 (2%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 720  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLVH 779

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 780  QSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 839

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 840  MEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 896

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 897  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 956

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 957  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1014

Query: 1065 FF----WSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQ 1220
            F      S   P DL      H     E  +  RR+    G  I     +++    TT+ 
Sbjct: 1015 FLKDVELSKMAPPDL-----PHWQDCHELWSKKRRRQRQSGIVIEDPPPSKASRKETTSG 1069

Query: 1221 TEFERV 1238
            T  E V
Sbjct: 1070 TTAEPV 1075


>ref|NP_081394.1| cyclin-dependent kinase 13 isoform 2 [Mus musculus].
          Length = 1451

 Score =  291 bits (746), Expect = 7e-79
 Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 3/312 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KA+ + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 702  VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTH 761

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++++N+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F  + IK  M+ L
Sbjct: 762  QSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQL 821

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR +S ++ S+P  YTN+V+TLW
Sbjct: 822  MEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYS-SEESRP--YTNKVITLW 878

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS++CGS  P VW
Sbjct: 879  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVW 938

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDP-YALDLIDKLLVLDPAQRIDSDDALNH 1061
            P+V K   F  ++  K  +RK+++    +V  P  ALDL D +L LDP++R  ++ AL  
Sbjct: 939  PDVIKLPYFNTMKPKKQYRRKLREE---FVFIPAAALDLFDYMLALDPSKRCTAEQALQC 995

Query: 1062 DFFWSDPMPSDL 1097
            +F   D  PS +
Sbjct: 996  EFL-RDVEPSKM 1006


>ref|NP_001074527.1| cyclin-dependent kinase 13 isoform 1 [Mus musculus].
          Length = 1511

 Score =  291 bits (746), Expect = 7e-79
 Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 3/312 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KA+ + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 702  VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTH 761

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++++N+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F  + IK  M+ L
Sbjct: 762  QSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQL 821

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR +S ++ S+P  YTN+V+TLW
Sbjct: 822  MEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYS-SEESRP--YTNKVITLW 878

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS++CGS  P VW
Sbjct: 879  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVW 938

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDP-YALDLIDKLLVLDPAQRIDSDDALNH 1061
            P+V K   F  ++  K  +RK+++    +V  P  ALDL D +L LDP++R  ++ AL  
Sbjct: 939  PDVIKLPYFNTMKPKKQYRRKLREE---FVFIPAAALDLFDYMLALDPSKRCTAEQALQC 995

Query: 1062 DFFWSDPMPSDL 1097
            +F   D  PS +
Sbjct: 996  EFL-RDVEPSKM 1006


>ref|NP_919428.1| cyclin-dependent kinase 10 isoform 1 [Mus musculus].
          Length = 360

 Score =  236 bits (601), Expect = 5e-62
 Identities = 127/311 (40%), Positives = 184/311 (59%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V ++EKL +IG+GT+G V++A+  +T + VALKKV M+ EK+G PI++LREI +L  
Sbjct: 33   CRSVKEFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLR 92

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
            L+H N+V L E+             SI+LV  +CE DLA LL N+   F+ +++K +M  
Sbjct: 93   LRHPNIVELKEVV------VGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQVKCIMLQ 146

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            +L GL Y+HRN I+HRD+K +N+L+T  G +K ADFGLARA+ +         T +VVTL
Sbjct: 147  VLRGLQYLHRNFIIHRDLKVSNLLMTDKGCVKTADFGLARAYGVPVKPM----TPKVVTL 202

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG       ID+W  GCI+AE+    P++ G +E HQ+ LI QL G+ +  +
Sbjct: 203  WYRAPELLLGTTTQTTSIDMWAVGCILAELLAHKPLLPGTSEIHQIDLIVQLLGTPSENI 262

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   K  L  +  L K     +K +          L L++ L + DP +R  S D L  
Sbjct: 263  WPGFSKLPLAGQYSLRKQPYNNLKHKFPWL--SEAGLRLLNFLFMYDPKKRATSGDCLES 320

Query: 1062 DFFWSDPMPSD 1094
             +F   P+P +
Sbjct: 321  SYFKEKPLPCE 331


>ref|NP_031687.2| cyclin-dependent kinase 11 [Mus musculus].
          Length = 784

 Score =  228 bits (581), Expect = 1e-59
 Identities = 118/311 (37%), Positives = 185/311 (59%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 421  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 480

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 481  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 534

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL+G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVTL
Sbjct: 535  LLSGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREY----GSPLKAYTPVVVTL 590

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  G ++  Q+  I +  G+ + ++
Sbjct: 591  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKIFKDLGTPSEKI 650

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP  +     +K+   +     ++ R  A + D    DL++K L   P +RI+++D L H
Sbjct: 651  WPGYNDLPAVKKMTFSEYPYNNLRKRFGALLSD-QGFDLMNKFLTYYPGRRINAEDGLKH 709

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 710  EYFRETPLPID 720


>ref|NP_031685.2| cyclin-dependent kinase 1 [Mus musculus].
          Length = 297

 Score =  222 bits (565), Expect = 7e-58
 Identities = 126/312 (40%), Positives = 185/312 (59%), Gaps = 3/312 (0%)
 Frame = +3

Query: 180  YEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 359
            Y K+ KIG+GT+G V+K +HR TGQ VA+KK+ +E+E+EG P TA+REI +L+ L+H N+
Sbjct: 4    YIKIEKIGEGTYGVVYKGRHRVTGQIVAMKKIRLESEEEGVPSTAIREISLLKELRHPNI 63

Query: 360  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK--FTLSEIKRVMQMLLNG 533
            V+L ++    +         +YL+F+F   DL   L ++        S +K  +  +L G
Sbjct: 64   VSLQDVLMQDS--------RLYLIFEFLSMDLKKYLDSIPPGQFMDSSLVKSYLHQILQG 115

Query: 534  LYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNR-YTNRVVTLWYR 710
            + + H  ++LHRD+K  N+LI   G +KLADFGLARAF +     P R YT+ VVTLWYR
Sbjct: 116  IVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARAFGI-----PIRVYTHEVVTLWYR 170

Query: 711  PPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPN 890
             PE+LLG   Y  P+D+W  G I AE+ T+ P+  G++E  QL  I +  G+   EVWP 
Sbjct: 171  SPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGTPNNEVWPE 230

Query: 891  VDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFF 1070
            V+  + + K    K +   +   +K    D   LDL+ K+LV DPA+RI    AL H +F
Sbjct: 231  VESLQDY-KNTFPKWKPGSLASHVKNL--DENGLDLLSKMLVYDPAKRISGKMALKHPYF 287

Query: 1071 WSDPMPSDLKGM 1106
              D + + +K M
Sbjct: 288  --DDLDNQIKKM 297


>ref|NP_035179.1| cyclin-dependent kinase 16 [Mus musculus].
          Length = 496

 Score =  219 bits (557), Expect = 6e-57
 Identities = 135/343 (39%), Positives = 187/343 (54%)
 Frame = +3

Query: 180  YEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 359
            Y KL K+G+GT+  V+K K + T   VALK++ +E+E EG P TA+RE+ +L+ LKH N+
Sbjct: 165  YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE-EGAPCTAIREVSLLKDLKHANI 223

Query: 360  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY 539
            V L +I  T+ S        + LVF++ + DL   L +      +  +K  +  LL GL 
Sbjct: 224  VTLHDIIHTEKS--------LTLVFEYLDKDLKQYLDDCGNVINMHNVKLFLFQLLRGLA 275

Query: 540  YIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPE 719
            Y HR K+LHRD+K  N+LI   G LKLADFGLARA S+   +    Y+N VVTLWYRPP+
Sbjct: 276  YCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT----YSNEVVTLWYRPPD 331

Query: 720  LLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDK 899
            +LLG  DY   ID+WG GCI  EM T  P+  G+T + QL  I ++ G+ T E WP +  
Sbjct: 332  ILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILS 391

Query: 900  YELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSD 1079
             E F      K +   +     A   D    DL+ KLL  +   RI ++DA  H FF S 
Sbjct: 392  NEEFRTYNYPKYRAEALLSH--APRLDSDGADLLTKLLQFEGRNRISAEDARKHPFFLS- 448

Query: 1080 PMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNPA 1208
             +   +  +  T  TS+F       +K + I   S   S  PA
Sbjct: 449  -LGERIHKLPDT--TSIFALKEVQLQKEANIRSTSMPDSGRPA 488


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,099,228
Number of extensions: 1344593
Number of successful extensions: 8262
Number of sequences better than 1.0e-05: 637
Number of HSP's gapped: 7096
Number of HSP's successfully gapped: 651
Length of query: 514
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 408
Effective length of database: 12,433,743
Effective search space: 5072967144
Effective search space used: 5072967144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008002
         (1544 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001252.1| cyclin-dependent kinase 9 [Homo sapiens].            749   0.0  
Alignment   gi|NP_055898.1| cyclin-dependent kinase 12 isoform 2 [Homo sapi...   295   1e-79
Alignment   gi|NP_057591.2| cyclin-dependent kinase 12 isoform 1 [Homo sapi...   295   1e-79
Alignment   gi|NP_112557.2| cyclin-dependent kinase 13 isoform 2 [Homo sapi...   291   9e-79
Alignment   gi|NP_003709.3| cyclin-dependent kinase 13 isoform 1 [Homo sapi...   291   9e-79
Alignment   gi|NP_443714.3| cyclin-dependent kinase 10 isoform a [Homo sapi...   232   6e-61
Alignment   gi|NP_277071.2| cyclin-dependent kinase 11A isoform 4 [Homo sap...   230   3e-60
Alignment   gi|NP_076916.2| cyclin-dependent kinase 11A isoform 1 [Homo sap...   230   3e-60
Alignment   gi|NP_277028.1| cyclin-dependent kinase 11B isoform 9 [Homo sap...   229   7e-60
Alignment   gi|NP_277027.1| cyclin-dependent kinase 11B isoform 8 [Homo sap...   229   7e-60

>ref|NP_001252.1| cyclin-dependent kinase 9 [Homo sapiens].
          Length = 372

 Score =  749 bits (1935), Expect = 0.0
 Identities = 368/372 (98%), Positives = 371/372 (99%)
 Frame = +3

Query: 126  MAKQYDSVECPFCDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFP 305
            MAKQYDSVECPFCDEV+KYEKLAKIGQGTFGEVFKA+HRKTGQKVALKKVLMENEKEGFP
Sbjct: 1    MAKQYDSVECPFCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFP 60

Query: 306  ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 485
            ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK
Sbjct: 61   ITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK 120

Query: 486  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 665
            FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS
Sbjct: 121  FTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNS 180

Query: 666  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 845
            QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL
Sbjct: 181  QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 240

Query: 846  ISQLCGSITPEVWPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 1025
            ISQLCGSITPEVWPNVD YEL+EKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP
Sbjct: 241  ISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDP 300

Query: 1026 AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 1205
            AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP
Sbjct: 301  AQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPRRKGSQITQQSTNQSRNP 360

Query: 1206 ATTNQTEFERVF 1241
            ATTNQTEFERVF
Sbjct: 361  ATTNQTEFERVF 372


>ref|NP_055898.1| cyclin-dependent kinase 12 isoform 2 [Homo sapiens].
          Length = 1481

 Score =  295 bits (754), Expect = 1e-79
 Identities = 163/366 (44%), Positives = 229/366 (62%), Gaps = 10/366 (2%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 FF----WSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQ 1220
            F      S   P DL      H     E  +  RR+    G  + +   +++    TT+ 
Sbjct: 1019 FLKDVELSKMAPPDL-----PHWQDCHELWSKKRRRQRQSGVVVEEPPPSKTSRKETTSG 1073

Query: 1221 TEFERV 1238
            T  E V
Sbjct: 1074 TSTEPV 1079


>ref|NP_057591.2| cyclin-dependent kinase 12 isoform 1 [Homo sapiens].
          Length = 1490

 Score =  295 bits (754), Expect = 1e-79
 Identities = 163/366 (44%), Positives = 229/366 (62%), Gaps = 10/366 (2%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KAK + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 724  VDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIH 783

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
             +VVN+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F+   IK  M+ L
Sbjct: 784  RSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQL 843

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR ++ ++ S+P  YTN+V+TLW
Sbjct: 844  MEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYN-SEESRP--YTNKVITLW 900

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS+LCGS  P VW
Sbjct: 901  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVW 960

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHD 1064
            P+V K   F  ++  K  +R++++          ALDL+D +L LDP++R  ++  L  D
Sbjct: 961  PDVIKLPYFNTMKPKKQYRRRLREEFSFI--PSAALDLLDHMLTLDPSKRCTAEQTLQSD 1018

Query: 1065 FF----WSDPMPSDLKGMLSTHLTSMFEYLAPPRRK----GSQITQQSTNQSRNPATTNQ 1220
            F      S   P DL      H     E  +  RR+    G  + +   +++    TT+ 
Sbjct: 1019 FLKDVELSKMAPPDL-----PHWQDCHELWSKKRRRQRQSGVVVEEPPPSKTSRKETTSG 1073

Query: 1221 TEFERV 1238
            T  E V
Sbjct: 1074 TSTEPV 1079


>ref|NP_112557.2| cyclin-dependent kinase 13 isoform 2 [Homo sapiens].
          Length = 1452

 Score =  291 bits (746), Expect = 9e-79
 Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 3/312 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KA+ + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 702  VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTH 761

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++++N+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F  + IK  M+ L
Sbjct: 762  QSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQL 821

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR +S ++ S+P  YTN+V+TLW
Sbjct: 822  MEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYS-SEESRP--YTNKVITLW 878

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS++CGS  P VW
Sbjct: 879  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVW 938

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDP-YALDLIDKLLVLDPAQRIDSDDALNH 1061
            P+V K   F  ++  K  +RK+++    +V  P  ALDL D +L LDP++R  ++ AL  
Sbjct: 939  PDVIKLPYFNTMKPKKQYRRKLREE---FVFIPAAALDLFDYMLALDPSKRCTAEQALQC 995

Query: 1062 DFFWSDPMPSDL 1097
            +F   D  PS +
Sbjct: 996  EFL-RDVEPSKM 1006


>ref|NP_003709.3| cyclin-dependent kinase 13 isoform 1 [Homo sapiens].
          Length = 1512

 Score =  291 bits (746), Expect = 9e-79
 Identities = 152/312 (48%), Positives = 215/312 (68%), Gaps = 3/312 (0%)
 Frame = +3

Query: 171  VTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKH 350
            V K++ +  IG+GT+G+V+KA+ + TG+ VALKKV ++NEKEGFPITA+REIKIL+ L H
Sbjct: 702  VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTH 761

Query: 351  ENVVNLIEICRTK--ASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 524
            ++++N+ EI   K  A  + + KG+ YLVF++ +HDL GLL + LV F  + IK  M+ L
Sbjct: 762  QSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQL 821

Query: 525  LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 704
            + GL Y H+   LHRD+K +N+L+   G +KLADFGLAR +S ++ S+P  YTN+V+TLW
Sbjct: 822  MEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYS-SEESRP--YTNKVITLW 878

Query: 705  YRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 884
            YRPPELLLGE  Y P ID+W  GCI+ E++T+ PI Q N E  QL LIS++CGS  P VW
Sbjct: 879  YRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVW 938

Query: 885  PNVDKYELFEKLELVKGQKRKVKDRLKAYVRDP-YALDLIDKLLVLDPAQRIDSDDALNH 1061
            P+V K   F  ++  K  +RK+++    +V  P  ALDL D +L LDP++R  ++ AL  
Sbjct: 939  PDVIKLPYFNTMKPKKQYRRKLREE---FVFIPAAALDLFDYMLALDPSKRCTAEQALQC 995

Query: 1062 DFFWSDPMPSDL 1097
            +F   D  PS +
Sbjct: 996  EFL-RDVEPSKM 1006


>ref|NP_443714.3| cyclin-dependent kinase 10 isoform a [Homo sapiens].
          Length = 360

 Score =  232 bits (592), Expect = 6e-61
 Identities = 125/311 (40%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V ++EKL +IG+GT+G V++A+  +T + VALKKV M+ EK+G PI++LREI +L  
Sbjct: 33   CRSVKEFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLR 92

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
            L+H N+V L E+             SI+LV  +CE DLA LL N+   F+ +++K ++  
Sbjct: 93   LRHPNIVELKEVV------VGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQVKCIVLQ 146

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            +L GL Y+HRN I+HRD+K +N+L+T  G +K ADFGLARA+ +         T +VVTL
Sbjct: 147  VLRGLQYLHRNFIIHRDLKVSNLLMTDKGCVKTADFGLARAYGVPVKPM----TPKVVTL 202

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG       ID+W  GCI+AE+    P++ G +E HQ+ LI QL G+ +  +
Sbjct: 203  WYRAPELLLGTTTQTTSIDMWAVGCILAELLAHRPLLPGTSEIHQIDLIVQLLGTPSENI 262

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   K  L  +  L K     +K +          L L+  L + DP +R  + D L  
Sbjct: 263  WPGFSKLPLVGQYSLRKQPYNNLKHKFPWL--SEAGLRLLHFLFMYDPKKRATAGDCLES 320

Query: 1062 DFFWSDPMPSD 1094
             +F   P+P +
Sbjct: 321  SYFKEKPLPCE 331


>ref|NP_277071.2| cyclin-dependent kinase 11A isoform 4 [Homo sapiens].
          Length = 770

 Score =  230 bits (586), Expect = 3e-60
 Identities = 118/311 (37%), Positives = 184/311 (59%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 407  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 466

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 467  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 520

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVT 
Sbjct: 521  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYG----SPLKAYTPVVVTQ 576

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  GN+E  Q+  + +  G+ + ++
Sbjct: 577  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKI 636

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +  + +K+   +     ++ R  A + D    DL++K L   P +RI ++D L H
Sbjct: 637  WPGYSELPVVKKMTFSEHPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRISAEDGLKH 695

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 696  EYFRETPLPID 706


>ref|NP_076916.2| cyclin-dependent kinase 11A isoform 1 [Homo sapiens].
          Length = 780

 Score =  230 bits (586), Expect = 3e-60
 Identities = 118/311 (37%), Positives = 184/311 (59%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 417  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 476

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 477  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 530

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVT 
Sbjct: 531  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYG----SPLKAYTPVVVTQ 586

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  GN+E  Q+  + +  G+ + ++
Sbjct: 587  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKI 646

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +  + +K+   +     ++ R  A + D    DL++K L   P +RI ++D L H
Sbjct: 647  WPGYSELPVVKKMTFSEHPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRISAEDGLKH 705

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 706  EYFRETPLPID 716


>ref|NP_277028.1| cyclin-dependent kinase 11B isoform 9 [Homo sapiens].
          Length = 771

 Score =  229 bits (583), Expect = 7e-60
 Identities = 118/311 (37%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 408  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 467

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 468  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 521

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVTL
Sbjct: 522  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYG----SPLKAYTPVVVTL 577

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  G +E  Q+  + +  G+ + ++
Sbjct: 578  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEIDQINKVFKDLGTPSEKI 637

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +    +K+   +     ++ R  A + D    DL++K L   P +RI ++D L H
Sbjct: 638  WPGYSELPAVKKMTFSEHPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRISAEDGLKH 696

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 697  EYFRETPLPID 707


>ref|NP_277027.1| cyclin-dependent kinase 11B isoform 8 [Homo sapiens].
          Length = 780

 Score =  229 bits (583), Expect = 7e-60
 Identities = 118/311 (37%), Positives = 183/311 (58%)
 Frame = +3

Query: 162  CDEVTKYEKLAKIGQGTFGEVFKAKHRKTGQKVALKKVLMENEKEGFPITALREIKILQL 341
            C  V +++ L +I +GT+G V++AK +KT + VALK++ ME EKEGFPIT+LREI  +  
Sbjct: 417  CRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILK 476

Query: 342  LKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQM 521
             +H N+V + EI              IY+V ++ EHDL  L+  +   F   E+K +M  
Sbjct: 477  AQHPNIVTVREIV------VGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQ 530

Query: 522  LLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTL 701
            LL G+ ++H N ILHRD+K +N+L++  G+LK+ DFGLAR +     S    YT  VVTL
Sbjct: 531  LLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYG----SPLKAYTPVVVTL 586

Query: 702  WYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEV 881
            WYR PELLLG ++Y   +D+W  GCI  E+ T+ P+  G +E  Q+  + +  G+ + ++
Sbjct: 587  WYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEIDQINKVFKDLGTPSEKI 646

Query: 882  WPNVDKYELFEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 1061
            WP   +    +K+   +     ++ R  A + D    DL++K L   P +RI ++D L H
Sbjct: 647  WPGYSELPAVKKMTFSEHPYNNLRKRFGALLSD-QGFDLMNKFLTYFPGRRISAEDGLKH 705

Query: 1062 DFFWSDPMPSD 1094
            ++F   P+P D
Sbjct: 706  EYFRETPLPID 716


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,360,611
Number of extensions: 1643271
Number of successful extensions: 10491
Number of sequences better than 1.0e-05: 768
Number of HSP's gapped: 9144
Number of HSP's successfully gapped: 800
Length of query: 514
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,770,016
Effective search space: 6011396512
Effective search space used: 6011396512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008002
         (1544 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                        1033   0.0  
gb|GL893803.2| Sus scrofa unplaced genomic scaffold ChrUScaf1688      297   9e-78
Sscrofa_Chr07                                                         105   7e-20

>Sscrofa_Chr01 
||          Length = 315321322

 Score = 1033 bits (521), Expect = 0.0
 Identities = 521/521 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1024      ccgcccagcgcatcgacagtgacgacgccctcaaccacgacttcttctggtccgacccca 1083
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302206599 ccgcccagcgcatcgacagtgacgacgccctcaaccacgacttcttctggtccgacccca 302206658

                                                                             
Query: 1084      tgccctcggacctcaagggcatgctgtccacccacctgacgtccatgttcgagtacctgg 1143
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302206659 tgccctcggacctcaagggcatgctgtccacccacctgacgtccatgttcgagtacctgg 302206718

                                                                             
Query: 1144      ccccgccgcgccggaagggcagccagatcacccagcagtccaccaaccagagccgcaatc 1203
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302206719 ccccgccgcgccggaagggcagccagatcacccagcagtccaccaaccagagccgcaatc 302206778

                                                                             
Query: 1204      cagccaccaccaaccagacggagttcgagcgcgtcttctgagggccggctgctggtgctt 1263
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302206779 cagccaccaccaaccagacggagttcgagcgcgtcttctgagggccggctgctggtgctt 302206838

                                                                             
Query: 1264      ctcgctagggctgtttgattttttccttctgctctgtgatttgcgttgtggagatgatgg 1323
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302206839 ctcgctagggctgtttgattttttccttctgctctgtgatttgcgttgtggagatgatgg 302206898

                                                                             
Query: 1324      ggcatttgagttttttctctagtgcatattttatttaatccccgccgggggcgtcgggag 1383
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302206899 ggcatttgagttttttctctagtgcatattttatttaatccccgccgggggcgtcgggag 302206958

                                                                             
Query: 1384      cccgccgcgcggactggaataaagctgtggctgagagtccaggagggcacctgggctgcc 1443
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302206959 cccgccgcgcggactggaataaagctgtggctgagagtccaggagggcacctgggctgcc 302207018

                                                                             
Query: 1444      tcaccttgttcccaggctttggggacgatgcccagagggtctccattgactttaggacag 1503
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302207019 tcaccttgttcccaggctttggggacgatgcccagagggtctccattgactttaggacag 302207078

                                                          
Query: 1504      gagtgcggtgggaggagcggtgccccgcaccagtgactttc 1544
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 302207079 gagtgcggtgggaggagcggtgccccgcaccagtgactttc 302207119



 Score =  347 bits (175), Expect = 1e-92
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                             
Query: 556       agatcctgcaccgggacatgaaggcggccaacgtgctcatcacccgcgacggggtgctga 615
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302145091 agatcctgcaccgggacatgaaggcggccaacgtgctcatcacccgcgacggggtgctga 302145150

                                                                             
Query: 616       agctggccgacttcgggctggcccgggccttcagccttgccaagaacagccagcccaacc 675
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302145151 agctggccgacttcgggctggcccgggccttcagccttgccaagaacagccagcccaacc 302145210

                                                                        
Query: 676       gctacaccaaccgtgtggtgacgctctggtaccggcccccggagctgttgctcgg 730
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302145211 gctacaccaaccgtgtggtgacgctctggtaccggcccccggagctgttgctcgg 302145265



 Score =  335 bits (169), Expect = 4e-89
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                             
Query: 389       agcttccccctataaccgctgcaaaggcagcatatacctggtgtttgacttctgtgaaca 448
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302144813 agcttccccctataaccgctgcaaaggcagcatatacctggtgtttgacttctgtgaaca 302144872

                                                                             
Query: 449       tgacctcgccgggctgctgagcaacgtcttagtcaagttcacgctgtcggagatcaagcg 508
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302144873 tgacctcgccgggctgctgagcaacgtcttagtcaagttcacgctgtcggagatcaagcg 302144932

                                                                  
Query: 509       ggtcatgcagatgttgctcaatggcctctactacatccacaggaacaag 557
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302144933 ggtcatgcagatgttgctcaatggcctctactacatccacaggaacaag 302144981



 Score =  291 bits (147), Expect = 6e-76
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                             
Query: 877       aggtgtggccaaacgtggacaagtatgagctgtttgagaaactggagctggtcaagggcc 936
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302146016 aggtgtggccaaacgtggacaagtatgagctgtttgagaaactggagctggtcaagggcc 302146075

                                                                             
Query: 937       agaagcggaaggtgaaggacaggctgaaggcctacgtgcgtgacccctacgcgctggacc 996
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302146076 agaagcggaaggtgaaggacaggctgaaggcctacgtgcgtgacccctacgcgctggacc 302146135

                                            
Query: 997       tcatcgacaagctgctggtgttggatc 1023
                 |||||||||||||||||||||||||||
Sbjct: 302146136 tcatcgacaagctgctggtgttggatc 302146162



 Score =  262 bits (132), Expect = 5e-67
 Identities = 146/153 (95%)
 Strand = Plus / Plus

                                                                             
Query: 729       ggggagcgggactacggnnnnnnnatcgacctgtggggtgccgggtgcatcatggcggag 788
                 |||||||||||||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 302145417 ggggagcgggactacggcccccccatcgacctgtggggtgccgggtgcatcatggcggag 302145476

                                                                             
Query: 789       atgtggacacgcagccccatcatgcagggcaacacggagcagcaccagcttgccctcatc 848
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302145477 atgtggacacgcagccccatcatgcagggcaacacggagcagcaccagcttgccctcatc 302145536

                                                  
Query: 849       agccagctctgtggctccatcacccctgaggtg 881
                 |||||||||||||||||||||||||||||||||
Sbjct: 302145537 agccagctctgtggctccatcacccctgaggtg 302145569



 Score =  212 bits (107), Expect = 4e-52
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                             
Query: 112       cactggaggcggccatggcaaagcagtacgactcggtggagtgccccttttgtgatgagg 171
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302142959 cactggaggcggccatggcaaagcagtacgactcggtggagtgccccttttgtgatgagg 302143018

                                                                
Query: 172       tgaccaaatatgagaagctcgctaaaatcggccaaggcaccttcggg 218
                 |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302143019 tgaccaaatatgagaagctcgctaaaatcggccaaggcaccttcggg 302143065



 Score =  182 bits (92), Expect = 4e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                             
Query: 299       gttccccatcacggccttgcgggaaatcaagatcctccagctcctaaaacacgagaacgt 358
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302144356 gttccccatcacggccttgcgggaaatcaagatcctccagctcctaaaacacgagaacgt 302144415

                                                 
Query: 359       ggtcaacctgattgagatctgtcgaaccaaag 390
                 ||||||||||||||||||||||||||||||||
Sbjct: 302144416 ggtcaacctgattgagatctgtcgaaccaaag 302144447



 Score =  165 bits (83), Expect = 9e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                             
Query: 217       gggaggtgtttaaggcaaagcaccgcaagaccggccaaaaggtggctctgaagaaggtac 276
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302143528 gggaggtgtttaaggcaaagcaccgcaagaccggccaaaaggtggctctgaagaaggtac 302143587

                                        
Query: 277       tgatggagaacgagaaggagggg 299
                 |||||||||||||||||||||||
Sbjct: 302143588 tgatggagaacgagaaggagggg 302143610



 Score =  147 bits (74), Expect = 2e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         ggaagtggccgtggaggcggaagtggcgcggccgcggaggggcctggagcacggcggcgg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302142848 ggaagtggccgtggaggcggaagtggcgcggccgcggaggggcctggagcacggcggcgg 302142907

                               
Query: 61        gacccggagcggga 74
                 ||||||||||||||
Sbjct: 302142908 gacccggagcggga 302142921


>gb|GL893803.2| Sus scrofa unplaced genomic scaffold ChrUScaf1688
          Length = 6815

 Score =  297 bits (150), Expect = 9e-78
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1048 acgccctcaaccacgacttcttctggtccgaccccatgccctcggacctcaagggcatgc 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2183 acgccctcaaccacgacttcttctggtccgaccccatgccctcggacctcaagggcatgc 2242

                                                                        
Query: 1108 tgtccacccacctgacgtccatgttcgagtacctggccccgccgcgccggaagggcagcc 1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2243 tgtccacccacctgacgtccatgttcgagtacctggccccgccgcgccggaagggcagcc 2302

                                          
Query: 1168 agatcacccagcagtccaccaaccagagcc 1197
            ||||||||||||||||||||||||||||||
Sbjct: 2303 agatcacccagcagtccaccaaccagagcc 2332



 Score =  291 bits (147), Expect = 6e-76
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1250 ggctgctggtgcttctcgctagggctgtttgattttttccttctgctctgtgatttgcgt 1309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 ggctgctggtgcttctcgctagggctgtttgattttttccttctgctctgtgatttgcgt 2492

                                                                        
Query: 1310 tgtggagatgatggggcatttgagttttttctctagtgcatattttatttaatccccgcc 1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 tgtggagatgatggggcatttgagttttttctctagtgcatattttatttaatccccgcc 2552

                                       
Query: 1370 gggggcgtcgggagcccgccgcgcgga 1396
            |||||||||||||||||||||||||||
Sbjct: 2553 gggggcgtcgggagcccgccgcgcgga 2579



 Score =  283 bits (143), Expect = 1e-73
 Identities = 143/143 (100%)
 Strand = Plus / Plus

                                                                        
Query: 877  aggtgtggccaaacgtggacaagtatgagctgtttgagaaactggagctggtcaagggcc 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 aggtgtggccaaacgtggacaagtatgagctgtttgagaaactggagctggtcaagggcc 1999

                                                                        
Query: 937  agaagcggaaggtgaaggacaggctgaaggcctacgtgcgtgacccctacgcgctggacc 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 agaagcggaaggtgaaggacaggctgaaggcctacgtgcgtgacccctacgcgctggacc 2059

                                   
Query: 997  tcatcgacaagctgctggtgttg 1019
            |||||||||||||||||||||||
Sbjct: 2060 tcatcgacaagctgctggtgttg 2082



 Score =  256 bits (129), Expect = 3e-65
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                        
Query: 753  atcgacctgtggggtgccgggtgcatcatggcggagatgtggacacgcagccccatcatg 812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 atcgacctgtggggtgccgggtgcatcatggcggagatgtggacacgcagccccatcatg 1354

                                                                        
Query: 813  cagggcaacacggagcagcaccagcttgccctcatcagccagctctgtggctccatcacc 872
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 cagggcaacacggagcagcaccagcttgccctcatcagccagctctgtggctccatcacc 1414

                     
Query: 873  cctgaggtg 881
            |||||||||
Sbjct: 1415 cctgaggtg 1423



 Score =  250 bits (126), Expect = 2e-63
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1419 agtccaggagggcacctgggctgcctcaccttgttcccaggctttggggacgatgcccag 1478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2680 agtccaggagggcacctgggctgcctcaccttgttcccaggctttggggacgatgcccag 2739

                                                                        
Query: 1479 agggtctccattgactttaggacaggagtgcggtgggaggagcggtgccccgcaccagtg 1538
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2740 agggtctccattgactttaggacaggagtgcggtgggaggagcggtgccccgcaccagtg 2799

                  
Query: 1539 actttc 1544
            ||||||
Sbjct: 2800 actttc 2805



 Score =  178 bits (90), Expect = 6e-42
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 129 gcaaagcagtacgactcggtggagtgccccttttgtgatgaggtgaccaaatatgagaag 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcaaagcagtacgactcggtggagtgccccttttgtgatgaggtgaccaaatatgagaag 60

                                         
Query: 189 ctcgctaaaatcggccaaggcaccttcggg 218
           ||||||||||||||||||||||||||||||
Sbjct: 61  ctcgctaaaatcggccaaggcaccttcggg 90



 Score =  155 bits (78), Expect = 9e-35
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                       
Query: 455 cgccgggctgctgagcaacgtcttagtcaagttcacgctgtcggagatcaagcgggtcat 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 cgccgggctgctgagcaacgtcttagtcaagttcacgctgtcggagatcaagcgggtcat 926

                             
Query: 515 gcagatgttgctcaatgg 532
           ||||||||||||||||||
Sbjct: 927 gcagatgttgctcaatgg 944


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  105 bits (53), Expect = 7e-20
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                             
Query: 1429      ggcacctgggctgcctcaccttgttcccaggctttggggacgatgcccagagggtctcca 1488
                 ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 112202963 ggcacttgggctgcctcaccttgttccctggctttggggatgatgcccagagggtctcca 112202904

                                  
Query: 1489      ttgactttaggacagga 1505
                 || || |||||| ||||
Sbjct: 112202903 tttaccttaggaaagga 112202887


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,685,398
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 17
Length of query: 1544
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1523
Effective length of database: 2,808,413,156
Effective search space: 4277213236588
Effective search space used: 4277213236588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)