Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008005
(1127 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777124.1| acidic mammalian chitinase precursor [Bos tauru... 521 e-148
Alignment gi|NP_001073688.1| chitinase-3-like protein 1 [Bos taurus]. 290 2e-78
Alignment gi|NP_001073685.1| oviduct-specific glycoprotein [Bos taurus]. 243 2e-64
Alignment gi|XP_001255878.2| PREDICTED: chitinase-3-like protein 1-like [... 105 7e-23
Alignment gi|NP_001193529.1| di-N-acetylchitobiase [Bos taurus]. 52 1e-06
>ref|NP_777124.1| acidic mammalian chitinase precursor [Bos taurus].
Length = 472
Score = 521 bits (1341), Expect = e-148
Identities = 249/336 (74%), Positives = 271/336 (80%)
Frame = +1
Query: 103 MAKFVXXXXXXXXXXXXXXSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAG 282
MAK + SAYQL+CYF+NWAQYRPGLGSFKPD+IDPCLCTHL+YAFAG
Sbjct: 1 MAKLIFLTGLAFLLNAQLGSAYQLVCYFSNWAQYRPGLGSFKPDNIDPCLCTHLIYAFAG 60
Query: 283 MRDNEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFI 462
M ++EITT E +DV Y SFN LK KNSQLK LLAIGGWNFGTAPFTAMV+T ENR+TFI
Sbjct: 61 MSNSEITTIEWNDVALYSSFNDLKKKNSQLKILLAIGGWNFGTAPFTAMVATPENRKTFI 120
Query: 463 TSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLV 642
+SVIKFL QYGFDGLDFDWEYPG RGSPSQDKHLFTVLVQE REAFEQEAKQT + RLLV
Sbjct: 121 SSVIKFLHQYGFDGLDFDWEYPGFRGSPSQDKHLFTVLVQETREAFEQEAKQTNKPRLLV 180
Query: 643 TAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAY 822
TAAVAAG+SNIQ+GYEIPQLSQYLD+IHVMTYD H SWEGY GENSPLYKYPTDTGSN Y
Sbjct: 181 TAAVAAGISNIQAGYEIPQLSQYLDFIHVMTYDFHGSWEGYTGENSPLYKYPTDTGSNTY 240
Query: 823 LNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGI 1002
LNV+YAMNYWK NGAPAEKLI+GFPAYGH F+L + S I YT+EAG
Sbjct: 241 LNVEYAMNYWKKNGAPAEKLIIGFPAYGHNFILRDASNNGIGAPTSGAGPAGPYTREAGF 300
Query: 1003 WAYYEICTFPKNGATQAWDAPSEVPYAL*GNEMGWV 1110
WAYYEIC F K+GAT+AWD VPYA G E WV
Sbjct: 301 WAYYEICAFLKDGATEAWDDSQNVPYAYKGTE--WV 334
>ref|NP_001073688.1| chitinase-3-like protein 1 [Bos taurus].
Length = 391
Score = 290 bits (741), Expect = 2e-78
Identities = 150/317 (47%), Positives = 205/317 (64%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
+AY+LICY+T+W+QYR G GS PD IDP LCTH++Y+FA + +NEI T E +DVT Y +
Sbjct: 28 AAYKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVTLYDT 87
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LKN+N LKTLL++GGWNFG+ F+ + S ++R+TFI SV FLR +GFDGLD W
Sbjct: 88 LNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAW 147
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
YPG R DK T LV+EM+ F +EA Q +LL++AAV AG I GY+I Q
Sbjct: 148 LYPGWR-----DKRHLTTLVKEMKAEFVREA-QAGTEQLLLSAAVPAGKIAIDRGYDIAQ 201
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
+S++LD+I ++TYD H +W G +SPL++ D S+ + N DYA++Y GAPA K
Sbjct: 202 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSDRFSNADYAVSYMLRLGAPANK 261
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
L++G P +G ++ L++ SK D+ +TKE GI AYYEIC F T +
Sbjct: 262 LVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGQFTKEKGILAYYEICDFLHGAITHRF- 319
Query: 1060 APSEVPYAL*GNEMGWV 1110
+VPYA GN+ WV
Sbjct: 320 RDQQVPYATKGNQ--WV 334
>ref|NP_001073685.1| oviduct-specific glycoprotein [Bos taurus].
Length = 480
Score = 243 bits (620), Expect = 2e-64
Identities = 129/277 (46%), Positives = 170/277 (61%), Gaps = 1/277 (0%)
Frame = +1
Query: 283 MRDNEITTTEG-DDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTF 459
M +N+I + D+ Y FN LK +N LKTLL+IGGWNFGT FT M+ST NR+ F
Sbjct: 1 MSNNQIVPKDPQDEKILYPEFNKLKERNRGLKTLLSIGGWNFGTVRFTTMLSTFSNRERF 60
Query: 460 ITSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLL 639
++SVI LR +GFDGLD + YPG RGSP++D+ F L++E+ +AF+ EA+ T + RLL
Sbjct: 61 VSSVIALLRTHGFDGLDLFFLYPGLRGSPARDRWTFVFLLEELLQAFKNEAQLTMRPRLL 120
Query: 640 VTAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNA 819
++AAV+ +Q YE L + LD+I V++YDLH SWE G NSPL+ P D S+A
Sbjct: 121 LSAAVSGDPHVVQKAYEARLLGRLLDFISVLSYDLHGSWEKVTGHNSPLFSLPGDPKSSA 180
Query: 820 YLNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAG 999
YAMNYW+ G P EKL++G P YG TF L S+ ++ YTK+AG
Sbjct: 181 -----YAMNYWRQLGVPPEKLLMGLPTYGRTFHLLKASQNELRAQAVGPASPGKYTKQAG 235
Query: 1000 IWAYYEICTFPKNGATQAWDAPSEVPYAL*GNEMGWV 1110
AYYEIC F + A + W VPYA G E WV
Sbjct: 236 FLAYYEICCFVRR-AKKRWINDQYVPYAFKGKE--WV 269
>ref|XP_001255878.2| PREDICTED: chitinase-3-like protein 1-like [Bos taurus].
Length = 202
Score = 105 bits (262), Expect = 7e-23
Identities = 54/135 (40%), Positives = 78/135 (57%)
Frame = +1
Query: 706 QYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEKLI 885
Q+LD+I ++TYD H +W G +SPL++ D S+ + N DYA++Y GAPA KL+
Sbjct: 15 QHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSDRFSNADYAVSYMLRLGAPANKLV 74
Query: 886 VGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWDAP 1065
+G P +G ++ L++ SK D+ +TKE GI AYYEIC F T +
Sbjct: 75 MGIPTFGRSYTLAS-SKTDVGAPISGPGIPGQFTKEKGILAYYEICDFLHGAITHRF-RD 132
Query: 1066 SEVPYAL*GNEMGWV 1110
+VPYA GN+ WV
Sbjct: 133 QQVPYATKGNQ--WV 145
>ref|NP_001193529.1| di-N-acetylchitobiase [Bos taurus].
Length = 377
Score = 51.6 bits (122), Expect = 1e-06
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 3/171 (1%)
Frame = +1
Query: 430 VSTAENRQTFITSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQE 609
+ A R ++I +K + DG++ D E + SP + + T LV+E ++F E
Sbjct: 113 IINATFRASWIAQQVKLAKTQYMDGINLDIEQDVAHSSP--EYYALTALVKETTDSFHHE 170
Query: 610 AKQTKQARLLVTAAVAAGVSNIQSG-YEIPQLSQYLDYIHVMTYDLH--ASWEGYAGENS 780
K ++ VT V G + + + Y ++ D++ VM+YD A + AG NS
Sbjct: 171 IKGSQ-----VTFDVPWGPNCVGARCYNYTGIADACDFLFVMSYDERCLACSQCIAGANS 225
Query: 781 PLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPS 933
P + T TG + ++ + G +KL++G P YG+ F N S
Sbjct: 226 PYIQ--TLTGYDDFIKI----------GINPKKLVMGIPWYGYDFTCQNLS 264
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,222,841
Number of extensions: 1280435
Number of successful extensions: 4558
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4547
Number of HSP's successfully gapped: 5
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008005
(1127 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537030.2| PREDICTED: similar to Acidic mammalian chitinas... 560 e-159
Alignment gi|XP_852238.1| PREDICTED: similar to Oviduct-specific glycopro... 293 2e-80
Alignment gi|NP_001171278.1| chitinase-3-like protein 1 [Canis lupus fami... 281 8e-76
>ref|XP_537030.2| PREDICTED: similar to Acidic mammalian chitinase precursor (AMCase)
(TSA1902) [Canis familiaris].
Length = 493
Score = 560 bits (1442), Expect = e-159
Identities = 264/317 (83%), Positives = 281/317 (88%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAYQL CYFTNWAQYRPGLGSFKPDDIDPCLCTHL+YAFAGM++NEITT E DDVTFYQ+
Sbjct: 30 SAYQLTCYFTNWAQYRPGLGSFKPDDIDPCLCTHLIYAFAGMKNNEITTIEWDDVTFYQA 89
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVS+ ENRQTFI SVIKFLRQY FDGLDFDW
Sbjct: 90 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSSPENRQTFIASVIKFLRQYEFDGLDFDW 149
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
EYPGSRGSP QDKHLFTVLVQEMREAFEQEA+Q + RL++TAAVAAG+SNIQSGY+IPQ
Sbjct: 150 EYPGSRGSPPQDKHLFTVLVQEMREAFEQEAQQINKPRLMITAAVAAGISNIQSGYDIPQ 209
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
LSQYLDYIHVMTYD HASWEGY GENSPLYKYP+DTGSNAYLNVDY MNYW DNGAPAEK
Sbjct: 210 LSQYLDYIHVMTYDFHASWEGYTGENSPLYKYPSDTGSNAYLNVDYVMNYWMDNGAPAEK 269
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LIVGFPAYGHTF+LS+PS I YT++AG WAYYEICTF KNGATQAWD
Sbjct: 270 LIVGFPAYGHTFILSDPSNTGIDAPTSGAGPAGPYTRQAGFWAYYEICTFLKNGATQAWD 329
Query: 1060 APSEVPYAL*GNEMGWV 1110
AP +VPYA GNE WV
Sbjct: 330 APQDVPYAYQGNE--WV 344
>ref|XP_852238.1| PREDICTED: similar to Oviduct-specific glycoprotein precursor
(Oviductal glycoprotein) (Oviductin) (Estrogen-dependent
oviduct protein) (Mucin 9) [Canis familiaris].
Length = 553
Score = 293 bits (749), Expect(2) = 2e-80
Identities = 149/312 (47%), Positives = 197/312 (63%), Gaps = 1/312 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITT-TEGDDVTFYQ 336
+A++L+CYF +WAQ RPG S P D+DP LCTHL++AFA M +N+I T Y
Sbjct: 19 AAHKLVCYFASWAQSRPGPASVLPHDLDPFLCTHLIFAFATMENNQIVAMTSQKGKIVYP 78
Query: 337 SFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFD 516
FN LK +N +L+TLL+IGGW+FGT+ FT M+ST NR+ FI SVI LR Y FDGLD
Sbjct: 79 EFNKLKERNRELRTLLSIGGWDFGTSKFTTMLSTLSNRKKFINSVILLLRTYNFDGLDLF 138
Query: 517 WEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIP 696
+ YPG RGSP D+ F +L++E+ AF+ E K + RLL++AAV+ IQ Y++
Sbjct: 139 FLYPGLRGSPMSDRRTFLLLIKELLFAFQNEVKLDTRPRLLLSAAVSGDPYIIQIAYDVH 198
Query: 697 QLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAE 876
L + LD+I+V++YD H SWE + G NSPL+ P D S+A YAMNYW+ GAP E
Sbjct: 199 LLGKLLDFINVLSYDFHGSWEKFTGHNSPLFSLPGDPSSSA-----YAMNYWRKLGAPPE 253
Query: 877 KLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAW 1056
KL++GFP YG T+ L SK + YTK G AYYEIC+F + AT+ W
Sbjct: 254 KLLMGFPTYGRTYHLLKASKNGLQAQAVGPASPGMYTKHPGFLAYYEICSFLQR-ATKRW 312
Query: 1057 DAPSEVPYAL*G 1092
+VPYA G
Sbjct: 313 IDFQQVPYAYKG 324
Score = 25.8 bits (55), Expect(2) = 2e-80
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 1067 QKCPMPYRAMKWVGYDNVKS 1126
Q+ P Y+ WVGYD+ S
Sbjct: 316 QQVPYAYKGKVWVGYDDANS 335
>ref|NP_001171278.1| chitinase-3-like protein 1 [Canis lupus familiaris].
Length = 384
Score = 281 bits (719), Expect = 8e-76
Identities = 144/317 (45%), Positives = 205/317 (64%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SA++L+CY+TNW+QYR G GS PD IDP LCTH++Y+FA + +NEI T E +DVT Y +
Sbjct: 20 SAHKLVCYYTNWSQYRKGDGSCLPDAIDPFLCTHVIYSFANISNNEIDTWEWNDVTLYDT 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LK++N LKTLL++GGW+FG+ F+ + S ++R+ FI SV FLR +GFDGLD W
Sbjct: 80 LNTLKSRNPNLKTLLSVGGWSFGSQRFSKIASKTQSRRLFIKSVPPFLRTHGFDGLDLAW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
+P R DK FT LV+EM+ F +EA+ LL++AAV+AG I SGY++ Q
Sbjct: 140 LHPERR-----DKRHFTTLVKEMKAEFAREAQAGAGQLLLLSAAVSAGKVTIDSGYDVAQ 194
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
+S++LD+I +M+YD H +W G +SPL++ D S+ + N DYA++Y G PA K
Sbjct: 195 ISRHLDFISLMSYDFHGAWRQTTGHHSPLFRGQMDASSDRFNNADYAVSYMLRLGVPANK 254
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
L++G P +G +F L++ S+ + +TKE GI AYYEIC F + GA+
Sbjct: 255 LLMGIPTFGRSFTLAS-SETGVGAPISGPGLSGQFTKEEGILAYYEICDFLR-GASVHRL 312
Query: 1060 APSEVPYAL*GNEMGWV 1110
+VPYA GN+ WV
Sbjct: 313 TSQQVPYATKGNQ--WV 327
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,253,514
Number of extensions: 1322787
Number of successful extensions: 4661
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4648
Number of HSP's successfully gapped: 4
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008005
(1127 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929072.1| PREDICTED: acidic mammalian chitinase [Sus s... 608 e-174
Alignment gi|XP_003130344.1| PREDICTED: chitotriosidase-1 [Sus scrofa]. 340 8e-94
Alignment gi|XP_003355294.1| PREDICTED: oviduct-specific glycoprotein-lik... 301 3e-82
Alignment gi|NP_999235.1| oviduct-specific glycoprotein precursor [Sus sc... 301 3e-82
Alignment gi|NP_001001540.1| chitinase-3-like protein 1 precursor [Sus sc... 290 1e-78
Alignment gi|XP_003355295.1| PREDICTED: oviduct-specific glycoprotein-lik... 287 7e-78
Alignment gi|XP_003355308.1| PREDICTED: chitinase-3-like protein 2 [Sus s... 262 2e-70
Alignment gi|XP_003355300.1| PREDICTED: chitinase-3-like protein 2 [Sus s... 262 2e-70
Alignment gi|XP_003357583.1| PREDICTED: chitinase-3-like protein 1-like [... 227 1e-59
Alignment gi|XP_003355307.1| PREDICTED: DENN domain-containing protein 2D... 122 4e-28
>ref|XP_001929072.1| PREDICTED: acidic mammalian chitinase [Sus scrofa].
Length = 478
Score = 608 bits (1567), Expect = e-174
Identities = 297/336 (88%), Positives = 300/336 (89%)
Frame = +1
Query: 103 MAKFVXXXXXXXXXXXXXXSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAG 282
MAK V SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAG
Sbjct: 1 MAKLVLLTGLALLLNAQLGSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAG 60
Query: 283 MRDNEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFI 462
MR+NEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFI
Sbjct: 61 MRNNEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFI 120
Query: 463 TSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLV 642
TSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLV
Sbjct: 121 TSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLV 180
Query: 643 TAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAY 822
TAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGS+AY
Sbjct: 181 TAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSDAY 240
Query: 823 LNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGI 1002
LNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPS DI YTKEAG
Sbjct: 241 LNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSNTDIGAPTSGAGPAGPYTKEAGF 300
Query: 1003 WAYYEICTFPKNGATQAWDAPSEVPYAL*GNEMGWV 1110
WAYYEICTF KNGATQAWDAP +VPYA GNE WV
Sbjct: 301 WAYYEICTFLKNGATQAWDAPQDVPYAYKGNE--WV 334
>ref|XP_003130344.1| PREDICTED: chitotriosidase-1 [Sus scrofa].
Length = 466
Score = 340 bits (872), Expect = 8e-94
Identities = 162/317 (51%), Positives = 217/317 (68%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SA +L+CYFTNWAQYR G F P D+DP LCTHL+YAFAGM ++++++TE +D Y+
Sbjct: 20 SAAKLVCYFTNWAQYREGAARFLPKDVDPNLCTHLIYAFAGMNNHQLSSTEWNDEALYKD 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
FNGLK N +LKTLLAIGGWNFGT FT MV+T NR TF+ S I+FLR+YGFDGLD DW
Sbjct: 80 FNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATVNNRHTFVNSAIRFLRKYGFDGLDLDW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
EYPGSRGSP DK FT LVQ++ AF+QEA+ T +ARLL++AAV+A +I++GYE+ Q
Sbjct: 140 EYPGSRGSPPSDKQRFTALVQDLANAFKQEAQITGKARLLLSAAVSAARPSIEAGYEVDQ 199
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
++ LD++ +M YD H WE G +SPLY+ ++G+ A NVD A+ W G PA K
Sbjct: 200 IAPNLDFLSLMVYDFHGLWEKTTGHHSPLYRRQGESGAAAEFNVDSAVQQWLQKGTPANK 259
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LI+G P YG +F L++ + +TKE G+ AY+E+C++ GA++
Sbjct: 260 LILGMPTYGRSFTLASSLDTGVRVPATGPGTPGPFTKEGGLLAYFEVCSW--KGASEHRI 317
Query: 1060 APSEVPYAL*GNEMGWV 1110
+VPYA GN+ WV
Sbjct: 318 KEQKVPYAFQGNQ--WV 332
>ref|XP_003355294.1| PREDICTED: oviduct-specific glycoprotein-like isoform 1 [Sus scrofa].
Length = 529
Score = 301 bits (772), Expect = 3e-82
Identities = 156/318 (49%), Positives = 204/318 (64%), Gaps = 1/318 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEG-DDVTFYQ 336
+A++L+CYF NWA RPG S P D+DP LCTHLV+AFA M D++I + D+ FY
Sbjct: 22 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 81
Query: 337 SFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFD 516
FN LK +N +LKTLL+IGGWNFGT+ FT M+ST NR+ FI S I LR +GFDGLD
Sbjct: 82 EFNQLKERNGKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 141
Query: 517 WEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIP 696
+ YPG RGSP +D+ F L++E+ AF +EA+ T + RLL++AAV+A IQ Y++
Sbjct: 142 FLYPGLRGSPRRDRWNFLFLLEELLLAFRREAQLTMRPRLLLSAAVSADPHVIQKAYDVR 201
Query: 697 QLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAE 876
L + LD+I+V++YDLH SWE G NSPL+ D S+A Y MNYW+ GAP E
Sbjct: 202 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPPE 256
Query: 877 KLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAW 1056
KL++GFP YG TF L SK ++ YTK+AG AYYE+C+F + A + W
Sbjct: 257 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCSFVQR-AKKRW 315
Query: 1057 DAPSEVPYAL*GNEMGWV 1110
VPYA G E WV
Sbjct: 316 IDHQYVPYAYRGKE--WV 331
>ref|NP_999235.1| oviduct-specific glycoprotein precursor [Sus scrofa].
Length = 527
Score = 301 bits (772), Expect = 3e-82
Identities = 156/318 (49%), Positives = 204/318 (64%), Gaps = 1/318 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEG-DDVTFYQ 336
+A++L+CYF NWA RPG S P D+DP LCTHLV+AFA M D++I + D+ FY
Sbjct: 20 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 79
Query: 337 SFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFD 516
FN LK +N +LKTLL+IGGWNFGT+ FT M+ST NR+ FI S I LR +GFDGLD
Sbjct: 80 EFNQLKERNEKLKTLLSIGGWNFGTSRFTTMLSTFTNREKFIRSAIGLLRTHGFDGLDLF 139
Query: 517 WEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIP 696
+ YPG RGSP +D+ F L++E+ AF +EA+ T + RLL++AAV+A IQ Y++
Sbjct: 140 FLYPGLRGSPRRDRWNFLFLLEELLLAFRREAQLTMRPRLLLSAAVSADPHVIQKAYDVR 199
Query: 697 QLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAE 876
L + LD+I+V++YDLH SWE G NSPL+ D S+A Y MNYW+ GAP E
Sbjct: 200 LLGRLLDFINVLSYDLHGSWEKVTGHNSPLFSLSDDPKSSA-----YTMNYWRKLGAPPE 254
Query: 877 KLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAW 1056
KL++GFP YG TF L SK ++ YTK+AG AYYE+C+F + A + W
Sbjct: 255 KLLMGFPTYGRTFRLLKASKNELGAEAVGPASPGKYTKQAGFLAYYEVCSFVQR-AKKRW 313
Query: 1057 DAPSEVPYAL*GNEMGWV 1110
VPYA G E WV
Sbjct: 314 IDHQYVPYAYRGKE--WV 329
>ref|NP_001001540.1| chitinase-3-like protein 1 precursor [Sus scrofa].
Length = 383
Score = 290 bits (742), Expect = 1e-78
Identities = 151/317 (47%), Positives = 205/317 (64%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
+AY+L+CY+T+W+QYR G GS PD IDP LCTH++Y+FA + +NEI T E +DVT Y +
Sbjct: 20 AAYKLVCYYTSWSQYREGDGSCFPDAIDPFLCTHIIYSFANISNNEIDTLEWNDVTLYDT 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LKN+N LKTLL++GGWNFG+ F+ + S ++R+TFI SV FLR +GFDGLD W
Sbjct: 80 LNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
PG R DK T LV+EM+ F +EA + RLL++ AV+AG I GY+I Q
Sbjct: 140 ISPGRR-----DKRHLTTLVKEMKAEFVREALPGTE-RLLLSGAVSAGKVAIDRGYDIAQ 193
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
+SQ+LD+I ++TYD H +W G +SPL++ D S+ + N DYA++Y GAPA K
Sbjct: 194 ISQHLDFISLLTYDFHGAWRQTTGHHSPLFRGQGDASSDRFSNADYAVSYVLRLGAPANK 253
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
L++G P +G +F L++ SK D+ +TKE GI AYYEIC F GAT
Sbjct: 254 LVMGIPTFGRSFTLAS-SKTDVGAPASGPGIPGRFTKEKGILAYYEICDF-LQGATVRRP 311
Query: 1060 APSEVPYAL*GNEMGWV 1110
+VPYA GN+ WV
Sbjct: 312 LGQQVPYATKGNQ--WV 326
>ref|XP_003355295.1| PREDICTED: oviduct-specific glycoprotein-like isoform 2 [Sus scrofa].
Length = 559
Score = 287 bits (735), Expect = 7e-78
Identities = 157/348 (45%), Positives = 204/348 (58%), Gaps = 31/348 (8%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEG-DDVTFYQ 336
+A++L+CYF NWA RPG S P D+DP LCTHLV+AFA M D++I + D+ FY
Sbjct: 22 AAHKLVCYFANWAFSRPGPASILPRDLDPFLCTHLVFAFASMNDSQIVAKDARDESIFYP 81
Query: 337 SFNGLKNKNSQLKTLLAIGGWNFGT------------------------------APFTA 426
FN LK +N +LKTLL+IGGWNFGT A FT
Sbjct: 82 EFNQLKERNGKLKTLLSIGGWNFGTSRQEKSVPRQGAKTEQLPMRRQQRDSGWLVAEFTT 141
Query: 427 MVSTAENRQTFITSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQ 606
M+ST NR+ FI S I LR +GFDGLD + YPG RGSP +D+ F L++E+ AF +
Sbjct: 142 MLSTFTNREKFIRSAIGLLRTHGFDGLDLFFLYPGLRGSPRRDRWNFLFLLEELLLAFRR 201
Query: 607 EAKQTKQARLLVTAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPL 786
EA+ T + RLL++AAV+A IQ Y++ L + LD+I+V++YDLH SWE G NSPL
Sbjct: 202 EAQLTMRPRLLLSAAVSADPHVIQKAYDVRLLGRLLDFINVLSYDLHGSWEKVTGHNSPL 261
Query: 787 YKYPTDTGSNAYLNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXX 966
+ D S+A Y MNYW+ GAP EKL++GFP YG TF L SK ++
Sbjct: 262 FSLSDDPKSSA-----YTMNYWRKLGAPPEKLLMGFPTYGRTFRLLKASKNELGAEAVGP 316
Query: 967 XXXXXYTKEAGIWAYYEICTFPKNGATQAWDAPSEVPYAL*GNEMGWV 1110
YTK+AG AYYE+C+F + A + W VPYA G E WV
Sbjct: 317 ASPGKYTKQAGFLAYYEVCSFVQR-AKKRWIDHQYVPYAYRGKE--WV 361
>ref|XP_003355308.1| PREDICTED: chitinase-3-like protein 2 [Sus scrofa].
Length = 438
Score = 262 bits (670), Expect = 2e-70
Identities = 135/319 (42%), Positives = 199/319 (62%), Gaps = 2/319 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAY+L+CYFT+W+Q R G F + DP LC+HL+Y+FA + DN++ + +D YQ+
Sbjct: 25 SAYKLVCYFTSWSQDRQEPGKFTLESADPFLCSHLIYSFASISDNKVVIKDKNDAMLYQT 84
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
LK KN +LK LL+IGG+ FG+ F MV ++++R FI SVI FLR + FDGLD W
Sbjct: 85 IKSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSKSRLEFINSVIPFLRNHNFDGLDISW 144
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
YP + D LF VL+ E+ EAF+Q++ ++ + RLL+TA V+AG I + Y+I +
Sbjct: 145 IYPDVK-----DNSLFIVLIHELAEAFQQDSVKSSKERLLLTAGVSAGRQIIDNSYQIKK 199
Query: 700 LSQYLDYIHVMTYDLHASWEG--YAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPA 873
L++ LD+I+++++D H SWE G NSPL K D G+ +Y NV+YA+ YW + G PA
Sbjct: 200 LAKELDFINLLSFDFHGSWEKPLVTGHNSPLRKGQLDRGTTSYYNVEYAVGYWLNKGMPA 259
Query: 874 EKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQA 1053
EK+++G P YG +F L++ ++ + T+ +G AYYEIC F GA
Sbjct: 260 EKVVMGIPTYGRSFTLAS-AETAVGAPASGPGAAGPITESSGFLAYYEICQF-LQGAKIM 317
Query: 1054 WDAPSEVPYAL*GNEMGWV 1110
+VPYA+ GN+ WV
Sbjct: 318 RLQDQQVPYAVKGNQ--WV 334
>ref|XP_003355300.1| PREDICTED: chitinase-3-like protein 2 [Sus scrofa].
Length = 392
Score = 262 bits (670), Expect = 2e-70
Identities = 135/319 (42%), Positives = 199/319 (62%), Gaps = 2/319 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAY+L+CYFT+W+Q R G F + DP LC+HL+Y+FA + DN++ + +D YQ+
Sbjct: 25 SAYKLVCYFTSWSQDRQEPGKFTLESADPFLCSHLIYSFASISDNKVVIKDKNDAMLYQT 84
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
LK KN +LK LL+IGG+ FG+ F MV ++++R FI SVI FLR + FDGLD W
Sbjct: 85 IKSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSKSRLEFINSVIPFLRNHNFDGLDISW 144
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
YP + D LF VL+ E+ EAF+Q++ ++ + RLL+TA V+AG I + Y+I +
Sbjct: 145 IYPDVK-----DNSLFIVLIHELAEAFQQDSVKSSKERLLLTAGVSAGRQIIDNSYQIKK 199
Query: 700 LSQYLDYIHVMTYDLHASWEG--YAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPA 873
L++ LD+I+++++D H SWE G NSPL K D G+ +Y NV+YA+ YW + G PA
Sbjct: 200 LAKELDFINLLSFDFHGSWEKPLVTGHNSPLRKGQLDRGTTSYYNVEYAVGYWLNKGMPA 259
Query: 874 EKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQA 1053
EK+++G P YG +F L++ ++ + T+ +G AYYEIC F GA
Sbjct: 260 EKVVMGIPTYGRSFTLAS-AETAVGAPASGPGAAGPITESSGFLAYYEICQF-LQGAKIM 317
Query: 1054 WDAPSEVPYAL*GNEMGWV 1110
+VPYA+ GN+ WV
Sbjct: 318 RLQDQQVPYAVKGNQ--WV 334
>ref|XP_003357583.1| PREDICTED: chitinase-3-like protein 1-like [Sus scrofa].
Length = 248
Score = 227 bits (578), Expect = 1e-59
Identities = 110/223 (49%), Positives = 153/223 (68%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
+AY+L+CY+T+W+QYR G GS PD IDP LCTH++Y+FA + +NEI T E +DVT Y +
Sbjct: 20 AAYKLVCYYTSWSQYREGDGSCFPDAIDPFLCTHIIYSFANISNNEIDTLEWNDVTLYDT 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LKN+N LKTLL++GGWNFG+ F+ + S ++R+TFI SV FLR +GFDGLD W
Sbjct: 80 LNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
+PG R DK T LV+EM+ F +EA + RLL++ AV+AG I GY+I Q
Sbjct: 140 IFPGRR-----DKRHLTTLVKEMKAEFVREALPGTE-RLLLSGAVSAGKVAIDRGYDIAQ 193
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLN 828
+SQ+LD+I ++TYD H +W G +SPL++ D S+ + N
Sbjct: 194 ISQHLDFISLLTYDFHGAWRQTTGHHSPLFRGQGDASSDRFSN 236
>ref|XP_003355307.1| PREDICTED: DENN domain-containing protein 2D [Sus scrofa].
Length = 648
Score = 122 bits (306), Expect = 4e-28
Identities = 58/92 (63%), Positives = 74/92 (80%)
Frame = +1
Query: 427 MVSTAENRQTFITSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQ 606
MVSTA NR+ FI SVI FLRQ+GFDG+D D+EYPGSRGSP +DK FT+L++EM AF++
Sbjct: 1 MVSTAANRKIFICSVIDFLRQHGFDGIDLDFEYPGSRGSPPEDKQRFTILIKEMLTAFDE 60
Query: 607 EAKQTKQARLLVTAAVAAGVSNIQSGYEIPQL 702
EAK T + RLL+TAAV+AG I +GYEI ++
Sbjct: 61 EAKNTGRPRLLITAAVSAGKGTIDAGYEIAEI 92
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,191,589
Number of extensions: 824728
Number of successful extensions: 2755
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2732
Number of HSP's successfully gapped: 13
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008005
(1127 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075675.2| acidic mammalian chitinase precursor [Mus muscu... 527 e-150
Alignment gi|XP_003084583.1| PREDICTED: acidic mammalian chitinase [Mus m... 429 e-120
Alignment gi|XP_003086365.1| PREDICTED: acidic mammalian chitinase [Mus m... 429 e-120
Alignment gi|NP_034022.2| chitinase-3-like protein 3 precursor [Mus muscu... 424 e-119
Alignment gi|NP_660108.2| chitinase-3-like protein 4 precursor [Mus muscu... 414 e-116
Alignment gi|NP_848499.1| hypothetical protein LOC229688 [Mus musculus]. 411 e-115
Alignment gi|XP_003084598.1| PREDICTED: chitinase-3-like protein 4-like [... 404 e-113
Alignment gi|NP_082255.1| chitotriosidase-1 precursor [Mus musculus]. 311 6e-85
Alignment gi|NP_031722.1| oviduct-specific glycoprotein precursor [Mus mu... 310 2e-84
Alignment gi|NP_031721.2| chitinase-3-like protein 1 [Mus musculus]. 269 3e-72
>ref|NP_075675.2| acidic mammalian chitinase precursor [Mus musculus].
Length = 473
Score = 527 bits (1357), Expect = e-150
Identities = 247/332 (74%), Positives = 277/332 (83%)
Frame = +1
Query: 103 MAKFVXXXXXXXXXXXXXXSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAG 282
MAK + SAY LICYFTNWAQYRPGLGSFKPDDI+PCLCTHL+YAFAG
Sbjct: 1 MAKLLLVTGLALLLNAQLGSAYNLICYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAG 60
Query: 283 MRDNEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFI 462
M++NEITT E +DVT Y++FN LKN+NS+LKTLLAIGGWNFGTAPFT MVST++NRQTFI
Sbjct: 61 MQNNEITTIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFI 120
Query: 463 TSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLV 642
TSVIKFLRQYGFDGLD DWEYPGSRGSP QDKHLFTVLV+EMREAFEQEA ++ + RL+V
Sbjct: 121 TSVIKFLRQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKEMREAFEQEAIESNRPRLMV 180
Query: 643 TAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAY 822
TAAVA G+SNIQ+GYEIP+LS+YLD+IHVMTYDLH SWEGY GENSPLYKYPT+TGSNAY
Sbjct: 181 TAAVAGGISNIQAGYEIPELSKYLDFIHVMTYDLHGSWEGYTGENSPLYKYPTETGSNAY 240
Query: 823 LNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGI 1002
LNVDY MNYWK+NGAPAEKLIVGFP YGHTF+L NPS I YT++AG
Sbjct: 241 LNVDYVMNYWKNNGAPAEKLIVGFPEYGHTFILRNPSDNGIGAPTSGDGPAGPYTRQAGF 300
Query: 1003 WAYYEICTFPKNGATQAWDAPSEVPYAL*GNE 1098
WAYYEICTF ++GAT+ WDA EVPYA NE
Sbjct: 301 WAYYEICTFLRSGATEVWDASQEVPYAYKANE 332
>ref|XP_003084583.1| PREDICTED: acidic mammalian chitinase [Mus musculus].
Length = 431
Score = 429 bits (1104), Expect = e-120
Identities = 209/317 (65%), Positives = 245/317 (77%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAYQL+CY+ N AQ RP LGSF P DIDPCLCTHL+YAFAGM++N++T +D+T YQ+
Sbjct: 20 SAYQLMCYYNNVAQNRPKLGSFNPADIDPCLCTHLIYAFAGMQNNKVTMRSMNDLTDYQA 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LK++N QLKTLLAIGG +FG APF+AMVST N+QTFI S IKFLRQYGFDGL+ DW
Sbjct: 80 LNTLKSRNVQLKTLLAIGGRDFGPAPFSAMVSTPHNQQTFINSAIKFLRQYGFDGLNLDW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
++PGSRGSPS+DKHLFTVLVQ++REAFE EA + K RL+VTA VA +S IQSGYEIPQ
Sbjct: 140 QFPGSRGSPSRDKHLFTVLVQKIREAFELEAIENKSPRLMVTATVAGVISTIQSGYEIPQ 199
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
LS +LDYI VMTY+LH S +GY GENSPLYK DTG N LNVDY M YW +NGA EK
Sbjct: 200 LSHFLDYIQVMTYNLHGSQDGYTGENSPLYKSLNDTGINTLLNVDYIMTYWNENGAAPEK 259
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LIVGFPAYG TF LS+PS I YT+E+G WAYYEIC+F +GAT+AWD
Sbjct: 260 LIVGFPAYGQTFTLSDPSNNGISAPTASAGTLGPYTEESGTWAYYEICSFLNDGATEAWD 319
Query: 1060 APSEVPYAL*GNEMGWV 1110
+ EVPYA GN+ WV
Sbjct: 320 SAQEVPYAYQGNK--WV 334
>ref|XP_003086365.1| PREDICTED: acidic mammalian chitinase [Mus musculus].
Length = 431
Score = 429 bits (1104), Expect = e-120
Identities = 209/317 (65%), Positives = 245/317 (77%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAYQL+CY+ N AQ RP LGSF P DIDPCLCTHL+YAFAGM++N++T +D+T YQ+
Sbjct: 20 SAYQLMCYYNNVAQNRPKLGSFNPADIDPCLCTHLIYAFAGMQNNKVTMRSMNDLTDYQA 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LK++N QLKTLLAIGG +FG APF+AMVST N+QTFI S IKFLRQYGFDGL+ DW
Sbjct: 80 LNTLKSRNVQLKTLLAIGGRDFGPAPFSAMVSTPHNQQTFINSAIKFLRQYGFDGLNLDW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
++PGSRGSPS+DKHLFTVLVQ++REAFE EA + K RL+VTA VA +S IQSGYEIPQ
Sbjct: 140 QFPGSRGSPSRDKHLFTVLVQKIREAFELEAIENKSPRLMVTATVAGVISTIQSGYEIPQ 199
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
LS +LDYI VMTY+LH S +GY GENSPLYK DTG N LNVDY M YW +NGA EK
Sbjct: 200 LSHFLDYIQVMTYNLHGSQDGYTGENSPLYKSLNDTGINTLLNVDYIMTYWNENGAAPEK 259
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LIVGFPAYG TF LS+PS I YT+E+G WAYYEIC+F +GAT+AWD
Sbjct: 260 LIVGFPAYGQTFTLSDPSNNGISAPTASAGTLGPYTEESGTWAYYEICSFLNDGATEAWD 319
Query: 1060 APSEVPYAL*GNEMGWV 1110
+ EVPYA GN+ WV
Sbjct: 320 SAQEVPYAYQGNK--WV 334
>ref|NP_034022.2| chitinase-3-like protein 3 precursor [Mus musculus].
Length = 398
Score = 424 bits (1091), Expect = e-119
Identities = 206/336 (61%), Positives = 252/336 (75%)
Frame = +1
Query: 103 MAKFVXXXXXXXXXXXXXXSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAG 282
MAK + S+YQL+CY+T+WA+ RP GSFKP +IDPCLCTHL+YAFAG
Sbjct: 1 MAKLILVTGLAILLNVQLGSSYQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAG 60
Query: 283 MRDNEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFI 462
M++NEIT T D+ Y++ NGLK+KN++LKTLLAIGGW FG APF+AMVST +NRQ FI
Sbjct: 61 MQNNEITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFI 120
Query: 463 TSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLV 642
SVI+FLRQY FDGL+ DW+YPGSRGSP +DKHLF+VLV+EMR+AFE+E+ + RLL+
Sbjct: 121 QSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLL 180
Query: 643 TAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAY 822
T+ A + I+SGY+IP+LSQ LDYI VMTYDLH +GY GENSPLYK P D G +A
Sbjct: 181 TSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSAD 240
Query: 823 LNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGI 1002
LNVD ++YWKD+GA +EKLIVGFPAYGHTF+LS+PSK I YT E+G+
Sbjct: 241 LNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGL 300
Query: 1003 WAYYEICTFPKNGATQAWDAPSEVPYAL*GNEMGWV 1110
AYYE+CTF GAT+ WDAP EVPYA GNE WV
Sbjct: 301 LAYYEVCTFLNEGATEVWDAPQEVPYAYQGNE--WV 334
>ref|NP_660108.2| chitinase-3-like protein 4 precursor [Mus musculus].
Length = 402
Score = 414 bits (1064), Expect = e-116
Identities = 203/336 (60%), Positives = 247/336 (73%)
Frame = +1
Query: 103 MAKFVXXXXXXXXXXXXXXSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAG 282
MAK + S+YQL+CY+T+WA+ RP GSFKP +IDPCLCTHL+YAFAG
Sbjct: 1 MAKLILVTGLAILLNVQLGSSYQLMCYYTSWAKDRPTEGSFKPGNIDPCLCTHLIYAFAG 60
Query: 283 MRDNEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFI 462
M++NEIT D+ Y++ NGLK++N++LKTLLAIGGW FG APF++MVST +NRQTFI
Sbjct: 61 MKNNEITYLSEQDLRDYEALNGLKDRNTELKTLLAIGGWKFGPAPFSSMVSTPQNRQTFI 120
Query: 463 TSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLV 642
SVI+FLRQY FDGL+ DW+YPGSRGSP +DKHLF+VLVQEMR+AFE+E+ RLL+
Sbjct: 121 KSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVQEMRKAFEEESTLNHIPRLLL 180
Query: 643 TAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAY 822
T+ A + I+SGY+IP+LSQ LDYI VMTYDLH GY GENSPLYK P D G +A
Sbjct: 181 TSTGAGFIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKNGYTGENSPLYKSPYDIGKSAD 240
Query: 823 LNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGI 1002
LNVD + YWKD+GA +EKLIVGFPAYGHTF+LS+PSK I YT E G+
Sbjct: 241 LNVDSIITYWKDHGAASEKLIVGFPAYGHTFILSDPSKNGIGDPTVSAGPPGKYTNEQGL 300
Query: 1003 WAYYEICTFPKNGATQAWDAPSEVPYAL*GNEMGWV 1110
AY+EICTF GAT+ +DA EVPYA GNE WV
Sbjct: 301 LAYFEICTFLNEGATEIFDATQEVPYAYLGNE--WV 334
>ref|NP_848499.1| hypothetical protein LOC229688 [Mus musculus].
Length = 440
Score = 411 bits (1057), Expect = e-115
Identities = 195/338 (57%), Positives = 242/338 (71%)
Frame = +1
Query: 97 ATMAKFVXXXXXXXXXXXXXXSAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAF 276
AT++K V SAYQL+CYF NW Q++P + K +DIDPCLCTHL+Y+F
Sbjct: 16 ATISKLVFIMGLNLLLNAQMGSAYQLMCYFNNWPQHQPDVRDIKHEDIDPCLCTHLIYSF 75
Query: 277 AGMRDNEITTTEGDDVTFYQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQT 456
AG+ +N T T+ ++ Y+ FN LK +N++LKTLL+IG WNFG F MVST ENR +
Sbjct: 76 AGIWENNFTMTKRKELDDYKGFNDLKKRNNKLKTLLSIGCWNFGDGSFITMVSTPENRHS 135
Query: 457 FITSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARL 636
FITS+IKFLR+YGFDGL+ W+YPG GSP +DKHLFT+L+ E+R+AFE+E + K+ RL
Sbjct: 136 FITSIIKFLRKYGFDGLNLAWQYPGCYGSPPRDKHLFTILMHEIRKAFEKEVSKNKKPRL 195
Query: 637 LVTAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSN 816
+VTAAVA +S IQ GYEIPQLSQ LDYI VMTYDLH SW+GY GENSPLYK P +TG
Sbjct: 196 MVTAAVAGVISTIQFGYEIPQLSQSLDYIQVMTYDLHGSWDGYTGENSPLYKSPIETGVK 255
Query: 817 AYLNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEA 996
A+ N+ Y M+ WK GA EKLIVGFPAYGHTF+LS+ +K +I +TK+
Sbjct: 256 AFHNIKYIMDNWKKKGASPEKLIVGFPAYGHTFILSDSTKTEIGAPSNRGGHPGPHTKQT 315
Query: 997 GIWAYYEICTFPKNGATQAWDAPSEVPYAL*GNEMGWV 1110
G WAYYEICTF KNGA Q W+A +VPYA GNE WV
Sbjct: 316 GFWAYYEICTFLKNGAIQVWNAAQQVPYAFHGNE--WV 351
>ref|XP_003084598.1| PREDICTED: chitinase-3-like protein 4-like [Mus musculus].
Length = 422
Score = 404 bits (1037), Expect = e-113
Identities = 198/317 (62%), Positives = 240/317 (75%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
S+YQL+CY+T+WA+ RP GSFKP IDPCLCTHL+YAFAGM++NEIT T D+ Y++
Sbjct: 40 SSYQLMCYYTSWAKDRPRQGSFKPGTIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDYET 99
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
NGLK++N++LKTLLAIGGW FG APF+AMVST +N +TFI SVIKFLRQY FDGL+ DW
Sbjct: 100 LNGLKDRNTELKTLLAIGGWKFGPAPFSAMVSTPQNHKTFIQSVIKFLRQYKFDGLNLDW 159
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
++PGSRGS +DK LF+VLVQEMR+AFE+E+ RLL+T+ A + I+SGY+IP+
Sbjct: 160 QFPGSRGSDPKDKPLFSVLVQEMRKAFEEESTVKHIPRLLLTSTGAGIIDVIKSGYKIPE 219
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
LSQ LDYI VMTYDLH + GENS LYK P DTG +A LNVD ++YWKD+GA +EK
Sbjct: 220 LSQSLDYIQVMTYDLHDPKDDNTGENSSLYKSPFDTGKSADLNVDSIISYWKDHGAASEK 279
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LIVGFPAYGHTF+LS+PSK I YT G+ AYYEICTF GAT+ WD
Sbjct: 280 LIVGFPAYGHTFILSDPSKTGIGAPTVSAGPPGTYTHVPGLLAYYEICTFLNEGATEVWD 339
Query: 1060 APSEVPYAL*GNEMGWV 1110
AP EVPYA GNE WV
Sbjct: 340 APQEVPYAYQGNE--WV 354
>ref|NP_082255.1| chitotriosidase-1 precursor [Mus musculus].
Length = 464
Score = 311 bits (797), Expect = 6e-85
Identities = 150/317 (47%), Positives = 208/317 (65%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SA +L+CY TNW+QYR F P D+DP LCTH+++AFAGM +++++T E +D YQ
Sbjct: 20 SAAKLVCYLTNWSQYRTEAVRFFPRDVDPNLCTHVIFAFAGMDNHQLSTVEHNDELLYQE 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LK KN +LKTLLA+GGW FGT FT MV+TA NRQTF+ S + FLR GFDGLD DW
Sbjct: 80 LNSLKTKNPKLKTLLAVGGWTFGTQKFTDMVATASNRQTFVKSALSFLRTQGFDGLDLDW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
E+PG RGSP+ DK FT L+Q++ +AF++EA+ + + RLL+TAAV + + +GYE+ +
Sbjct: 140 EFPGGRGSPTVDKERFTALIQDLAKAFQEEAQSSGKERLLLTAAVPSDRGLVDAGYEVDK 199
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
++Q LD+I++M YD H+S E G NSPLYK ++G+ A NVD A+ W G PA K
Sbjct: 200 IAQSLDFINLMAYDFHSSLEKTTGHNSPLYKRQGESGAAAEQNVDAAVTLWLQKGTPASK 259
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LI+G P YG +F L++ S + YTK+ G+ AYYE C++ + +
Sbjct: 260 LILGMPTYGRSFTLASSSDNGVGAPATGPGAPGPYTKDKGVLAYYEACSWKERHRIE--- 316
Query: 1060 APSEVPYAL*GNEMGWV 1110
+VPYA N+ WV
Sbjct: 317 -DQKVPYAFQDNQ--WV 330
>ref|NP_031722.1| oviduct-specific glycoprotein precursor [Mus musculus].
Length = 721
Score = 310 bits (793), Expect = 2e-84
Identities = 158/314 (50%), Positives = 205/314 (65%), Gaps = 1/314 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTE-GDDVTFYQ 336
+AY+L+CYFTNWA RPG S P D+DP LCTHL++AFA M +N+I D+ Y
Sbjct: 20 TAYKLVCYFTNWAHSRPGPASIMPHDLDPFLCTHLIFAFASMSNNQIVAKNLQDENVLYP 79
Query: 337 SFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFD 516
FN LK +N +LKTLL+IGGWNFGT+ FTAM+ST NR+ FI SVI FLR +GFDGLD
Sbjct: 80 EFNKLKERNRELKTLLSIGGWNFGTSRFTAMLSTLANREKFIDSVISFLRIHGFDGLDLF 139
Query: 517 WEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIP 696
+ YPG RGSP D+ F L++E++ AFE+EA T+ RLL++AAV+ S I + Y+
Sbjct: 140 FLYPGLRGSPPHDRWNFLFLIEELQFAFEREALLTQHPRLLLSAAVSGIPSIIHTSYDAL 199
Query: 697 QLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAE 876
L + LD+I+V++YDLH SWE + G NSPL+ P D+ S+A YAMNYW+ G PA+
Sbjct: 200 LLGRRLDFINVLSYDLHGSWEKFTGHNSPLFSLPEDSKSSA-----YAMNYWRKLGTPAD 254
Query: 877 KLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAW 1056
KLI+GFP YG F L SK + YTK+AG AYYE+C+F + A + W
Sbjct: 255 KLIMGFPTYGRNFYLLKESKNGLQTASMGPASPGKYTKQAGFLAYYEVCSFVQR-AKKHW 313
Query: 1057 DAPSEVPYAL*GNE 1098
VPYA G E
Sbjct: 314 IDYQYVPYAFKGKE 327
>ref|NP_031721.2| chitinase-3-like protein 1 [Mus musculus].
Length = 389
Score = 269 bits (687), Expect = 3e-72
Identities = 141/318 (44%), Positives = 201/318 (63%), Gaps = 1/318 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMR-DNEITTTEGDDVTFYQ 336
SAY+L+CYFT+W+QYR G+GSF PD I P LCTH++Y+FA + DN ++T E +D + Y
Sbjct: 28 SAYKLVCYFTSWSQYREGVGSFLPDAIQPFLCTHIIYSFANISSDNMLSTWEWNDESNYD 87
Query: 337 SFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFD 516
N LK +N+ LKTLL++GGW FG F+ + S E R F+ SV FLR YGFDGLD
Sbjct: 88 KLNKLKTRNTNLKTLLSVGGWKFGEKRFSEIASNTERRTAFVRSVAPFLRSYGFDGLDLA 147
Query: 517 WEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIP 696
W YP R DK F+ L++E+ F +E + ++ +LL++AA++AG I +GY+I
Sbjct: 148 WLYPRLR-----DKQYFSTLIKELNAEFTKEVQPGRE-KLLLSAALSAGKVAIDTGYDIA 201
Query: 697 QLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAE 876
Q++Q+LD+I++MTYD H W G +SPL++ DT + Y NV+YA+ Y GA A
Sbjct: 202 QIAQHLDFINLMTYDFHGVWRQITGHHSPLFQGQKDTRFDRYSNVNYAVQYMIRLGAQAS 261
Query: 877 KLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAW 1056
KL++G P +G +F L++ S+ + +TKEAG AYYEIC F K GA
Sbjct: 262 KLLMGIPTFGKSFTLAS-SENQLGAPISGEGLPGRFTKEAGTLAYYEICDFLK-GAEVHR 319
Query: 1057 DAPSEVPYAL*GNEMGWV 1110
+ +VP+A GN+ WV
Sbjct: 320 LSNEKVPFATKGNQ--WV 335
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,215,261
Number of extensions: 1085404
Number of successful extensions: 3753
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3746
Number of HSP's successfully gapped: 11
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008005
(1127 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_970615.2| acidic mammalian chitinase isoform c [Homo sapi... 553 e-157
Alignment gi|NP_068569.2| acidic mammalian chitinase isoform a [Homo sapi... 389 e-108
Alignment gi|NP_003456.1| chitotriosidase-1 precursor [Homo sapiens]. 352 5e-97
Alignment gi|NP_002548.3| oviduct-specific glycoprotein precursor [Homo s... 299 3e-81
Alignment gi|NP_001267.2| chitinase-3-like protein 1 precursor [Homo sapi... 286 3e-77
Alignment gi|NP_003991.2| chitinase-3-like protein 2 isoform a [Homo sapi... 266 3e-71
Alignment gi|NP_001020368.1| chitinase-3-like protein 2 isoform b [Homo s... 266 3e-71
Alignment gi|NP_001020370.1| chitinase-3-like protein 2 isoform c [Homo s... 202 5e-52
>ref|NP_970615.2| acidic mammalian chitinase isoform c [Homo sapiens].
Length = 476
Score = 553 bits (1425), Expect = e-157
Identities = 262/312 (83%), Positives = 273/312 (87%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAYQL CYFTNWAQYRPGLG F PD+IDPCLCTHL+YAFAG ++NEITT E +DVT YQ+
Sbjct: 20 SAYQLTCYFTNWAQYRPGLGRFMPDNIDPCLCTHLIYAFAGRQNNEITTIEWNDVTLYQA 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVST ENRQTFITSVIKFLRQY FDGLDFDW
Sbjct: 80 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
EYPGSRGSP QDKHLFTVLVQEMREAFEQEAKQ + RL+VTAAVAAG+SNIQSGYEIPQ
Sbjct: 140 EYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQ 199
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
LSQYLDYIHVMTYDLH SWEGY GENSPLYKYPTDTGSNAYLNVDY MNYWKDNGAPAEK
Sbjct: 200 LSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEK 259
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LIVGFP YGH F+LSNPS I Y KE+GIWAYYEICTF KNGATQ WD
Sbjct: 260 LIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQGWD 319
Query: 1060 APSEVPYAL*GN 1095
AP EVPYA GN
Sbjct: 320 APQEVPYAYQGN 331
>ref|NP_068569.2| acidic mammalian chitinase isoform a [Homo sapiens].
Length = 368
Score = 389 bits (998), Expect = e-108
Identities = 186/223 (83%), Positives = 191/223 (85%)
Frame = +1
Query: 427 MVSTAENRQTFITSVIKFLRQYGFDGLDFDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQ 606
MVST ENRQTFITSVIKFLRQY FDGLDFDWEYPGSRGSP QDKHLFTVLVQEMREAFEQ
Sbjct: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
Query: 607 EAKQTKQARLLVTAAVAAGVSNIQSGYEIPQLSQYLDYIHVMTYDLHASWEGYAGENSPL 786
EAKQ + RL+VTAAVAAG+SNIQSGYEIPQLSQYLDYIHVMTYDLH SWEGY GENSPL
Sbjct: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
Query: 787 YKYPTDTGSNAYLNVDYAMNYWKDNGAPAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXX 966
YKYPTDTGSNAYLNVDY MNYWKDNGAPAEKLIVGFP YGH F+LSNPS I
Sbjct: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
Query: 967 XXXXXYTKEAGIWAYYEICTFPKNGATQAWDAPSEVPYAL*GN 1095
Y KE+GIWAYYEICTF KNGATQ WDAP EVPYA GN
Sbjct: 181 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGN 223
>ref|NP_003456.1| chitotriosidase-1 precursor [Homo sapiens].
Length = 466
Score = 352 bits (902), Expect = 5e-97
Identities = 168/317 (52%), Positives = 221/317 (69%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SA +L+CYFTNWAQYR G F P D+DP LCTHL+YAFAGM +++++TTE +D T YQ
Sbjct: 20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQE 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
FNGLK N +LKTLLAIGGWNFGT FT MV+TA NRQTF+ S I+FLR+Y FDGLD DW
Sbjct: 80 FNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
EYPGS+GSP+ DK FT LVQ++ AF+QEA+ + + RLL++AAV AG + + +GYE+ +
Sbjct: 140 EYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDK 199
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
++Q LD++++M YD H SWE G NSPLYK ++G+ A LNVD A+ W G PA K
Sbjct: 200 IAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASK 259
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
LI+G P YG +F L++ S + +TKE G+ AYYE+C++ GAT+
Sbjct: 260 LILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW--KGATKQRI 317
Query: 1060 APSEVPYAL*GNEMGWV 1110
+VPY N+ WV
Sbjct: 318 QDQKVPYIFRDNQ--WV 332
>ref|NP_002548.3| oviduct-specific glycoprotein precursor [Homo sapiens].
Length = 678
Score = 299 bits (766), Expect = 3e-81
Identities = 155/318 (48%), Positives = 203/318 (63%), Gaps = 1/318 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTE-GDDVTFYQ 336
+A++L+CYFTNWA RPG S P D+DP LCTHL++AFA M +N+I + D+ Y
Sbjct: 20 AAHKLVCYFTNWAHSRPGPASILPHDLDPFLCTHLIFAFASMNNNQIVAKDLQDEKILYP 79
Query: 337 SFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFD 516
FN LK +N +LKTLL+IGGWNFGT+ FT M+ST NR+ FI SVI LR + FDGLD
Sbjct: 80 EFNKLKERNRELKTLLSIGGWNFGTSRFTTMLSTFANREKFIASVISLLRTHDFDGLDLF 139
Query: 517 WEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIP 696
+ YPG RGSP D+ F L++E+ AF +EA T + RLL++AAV+ +Q+ Y++
Sbjct: 140 FLYPGLRGSPMHDRWTFLFLIEELLFAFRKEALLTMRPRLLLSAAVSGVPHIVQTSYDVR 199
Query: 697 QLSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAE 876
L + LD+I+V++YDLH SWE + G NSPL+ P D S+A YAMNYW+ GAP+E
Sbjct: 200 FLGRLLDFINVLSYDLHGSWERFTGHNSPLFSLPEDPKSSA-----YAMNYWRKLGAPSE 254
Query: 877 KLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAW 1056
KLI+G P YG TF L SK + YTK+ G AY+EIC+F GA + W
Sbjct: 255 KLIMGIPTYGRTFRLLKASKNGLQARAIGPASPGKYTKQEGFLAYFEICSFVW-GAKKHW 313
Query: 1057 DAPSEVPYAL*GNEMGWV 1110
VPYA G E WV
Sbjct: 314 IDYQYVPYANKGKE--WV 329
>ref|NP_001267.2| chitinase-3-like protein 1 precursor [Homo sapiens].
Length = 383
Score = 286 bits (731), Expect = 3e-77
Identities = 147/317 (46%), Positives = 206/317 (64%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAY+L+CY+T+W+QYR G GS PD +D LCTH++Y+FA + ++ I T E +DVT Y
Sbjct: 20 SAYKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHIDTWEWNDVTLYGM 79
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LKN+N LKTLL++GGWNFG+ F+ + S ++R+TFI SV FLR +GFDGLD W
Sbjct: 80 LNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAW 139
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
YPG R DK FT L++EM+ F +EA+ K+ +LL++AA++AG I S Y+I +
Sbjct: 140 LYPGRR-----DKQHFTTLIKEMKAEFIKEAQPGKK-QLLLSAALSAGKVTIDSSYDIAK 193
Query: 700 LSQYLDYIHVMTYDLHASWEGYAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPAEK 879
+SQ+LD+I +MTYD H +W G G +SPL++ D + + N DYA+ Y GAPA K
Sbjct: 194 ISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASK 253
Query: 880 LIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQAWD 1059
L++G P +G +F L++ S+ + +TKEAG AYYEIC F + GAT
Sbjct: 254 LVMGIPTFGRSFTLAS-SETGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR-GATVHRI 311
Query: 1060 APSEVPYAL*GNEMGWV 1110
+VPYA GN+ WV
Sbjct: 312 LGQQVPYATKGNQ--WV 326
>ref|NP_003991.2| chitinase-3-like protein 2 isoform a [Homo sapiens].
Length = 390
Score = 266 bits (680), Expect = 3e-71
Identities = 136/319 (42%), Positives = 204/319 (63%), Gaps = 2/319 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAY+L+CYFTNW+Q R G F P++IDP LC+HL+Y+FA + +N++ + +V YQ+
Sbjct: 25 SAYKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKSEVMLYQT 84
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LK KN +LK LL+IGG+ FG+ F MV ++ +R FI S+I FLR + FDGLD W
Sbjct: 85 INSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSW 144
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
YP + ++ H FTVL+ E+ EAF+++ ++ + RLL+TA V+AG I + Y++ +
Sbjct: 145 IYPDQK----ENTH-FTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEK 199
Query: 700 LSQYLDYIHVMTYDLHASWEG--YAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPA 873
L++ LD+I+++++D H SWE G NSPL K D G ++Y NV+YA+ YW G P+
Sbjct: 200 LAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPS 259
Query: 874 EKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQA 1053
EK+++G P YGH+F L++ ++ + T+ +G AYYEIC F K GA
Sbjct: 260 EKVVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPITESSGFLAYYEICQFLK-GAKIT 317
Query: 1054 WDAPSEVPYAL*GNEMGWV 1110
+VPYA+ GN+ WV
Sbjct: 318 RLQDQQVPYAVKGNQ--WV 334
>ref|NP_001020368.1| chitinase-3-like protein 2 isoform b [Homo sapiens].
Length = 380
Score = 266 bits (680), Expect = 3e-71
Identities = 136/319 (42%), Positives = 204/319 (63%), Gaps = 2/319 (0%)
Frame = +1
Query: 160 SAYQLICYFTNWAQYRPGLGSFKPDDIDPCLCTHLVYAFAGMRDNEITTTEGDDVTFYQS 339
SAY+L+CYFTNW+Q R G F P++IDP LC+HL+Y+FA + +N++ + +V YQ+
Sbjct: 15 SAYKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKSEVMLYQT 74
Query: 340 FNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLDFDW 519
N LK KN +LK LL+IGG+ FG+ F MV ++ +R FI S+I FLR + FDGLD W
Sbjct: 75 INSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSW 134
Query: 520 EYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYEIPQ 699
YP + ++ H FTVL+ E+ EAF+++ ++ + RLL+TA V+AG I + Y++ +
Sbjct: 135 IYPDQK----ENTH-FTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEK 189
Query: 700 LSQYLDYIHVMTYDLHASWEG--YAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNGAPA 873
L++ LD+I+++++D H SWE G NSPL K D G ++Y NV+YA+ YW G P+
Sbjct: 190 LAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPS 249
Query: 874 EKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGATQA 1053
EK+++G P YGH+F L++ ++ + T+ +G AYYEIC F K GA
Sbjct: 250 EKVVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPITESSGFLAYYEICQFLK-GAKIT 307
Query: 1054 WDAPSEVPYAL*GNEMGWV 1110
+VPYA+ GN+ WV
Sbjct: 308 RLQDQQVPYAVKGNQ--WV 324
>ref|NP_001020370.1| chitinase-3-like protein 2 isoform c [Homo sapiens].
Length = 311
Score = 202 bits (514), Expect = 5e-52
Identities = 109/262 (41%), Positives = 163/262 (62%), Gaps = 2/262 (0%)
Frame = +1
Query: 331 YQSFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTAENRQTFITSVIKFLRQYGFDGLD 510
YQ+ N LK KN +LK LL+IGG+ FG+ F MV ++ +R FI S+I FLR + FDGLD
Sbjct: 3 YQTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLD 62
Query: 511 FDWEYPGSRGSPSQDKHLFTVLVQEMREAFEQEAKQTKQARLLVTAAVAAGVSNIQSGYE 690
W YP + ++ H FTVL+ E+ EAF+++ ++ + RLL+TA V+AG I + Y+
Sbjct: 63 VSWIYPDQK----ENTH-FTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQ 117
Query: 691 IPQLSQYLDYIHVMTYDLHASWEG--YAGENSPLYKYPTDTGSNAYLNVDYAMNYWKDNG 864
+ +L++ LD+I+++++D H SWE G NSPL K D G ++Y NV+YA+ YW G
Sbjct: 118 VEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKG 177
Query: 865 APAEKLIVGFPAYGHTFLLSNPSKPDIXXXXXXXXXXXXYTKEAGIWAYYEICTFPKNGA 1044
P+EK+++G P YGH+F L++ ++ + T+ +G AYYEIC F K GA
Sbjct: 178 MPSEKVVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPITESSGFLAYYEICQFLK-GA 235
Query: 1045 TQAWDAPSEVPYAL*GNEMGWV 1110
+VPYA+ GN+ WV
Sbjct: 236 KITRLQDQQVPYAVKGNQ--WV 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,467,184
Number of extensions: 1304367
Number of successful extensions: 4674
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4651
Number of HSP's successfully gapped: 8
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008005
(1127 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 396 e-107
>Sscrofa_Chr04
|| Length = 143465943
Score = 396 bits (200), Expect = e-107
Identities = 203/204 (99%)
Strand = Plus / Minus
Query: 156 aggttctgcctaccagctaatatgctacttcaccaactgggcccagtaccggccaggcct 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119419594 aggttctgcctaccagctaatatgctacttcaccaactgggcccagtaccggccaggcct 119419535
Query: 216 ggggagcttcaagcctgacgacatcgatccctgcctttgtacccacctggtctacgcctt 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119419534 ggggagcttcaagcctgacgacatcgatccctgcctttgtacccacctggtctacgcctt 119419475
Query: 276 cgccgggatgcgcgacaacgagatcaccaccactgagggggatgatgtgactttctacca 335
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119419474 cgccgggatgcgcaacaacgagatcaccaccactgagggggatgatgtgactttctacca 119419415
Query: 336 gtctttcaatggcctgaaaaacaa 359
||||||||||||||||||||||||
Sbjct: 119419414 gtctttcaatggcctgaaaaacaa 119419391
Score = 347 bits (175), Expect = 8e-93
Identities = 184/187 (98%)
Strand = Plus / Minus
Query: 831 ggattatgccatgaactactggaaggacaacggggcgccagctgagaagctcatcgttgg 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119413048 ggattatgccatgaactactggaaggacaacggggcgccagctgagaagctcatcgttgg 119412989
Query: 891 attccctgcctatggacacaccttcctcctgagcaacccttccaaaccggacattggtgc 950
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 119412988 attccctgcctatggacacaccttcctcctgagcaacccttccaacacggacattggtgc 119412929
Query: 951 ccccacttctggtgctggtcctgctgggccctacaccaaggaggctggaatctgggccta 1010
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 119412928 ccccacttctggtgctggtcctgctgggccctacaccaaggaggctggattctgggccta 119412869
Query: 1011 ctatgag 1017
|||||||
Sbjct: 119412868 ctatgag 119412862
Score = 307 bits (155), Expect = 7e-81
Identities = 165/167 (98%), Gaps = 1/167 (0%)
Strand = Plus / Minus
Query: 417 tttcactgccatggtttccactgcggagaaccgccagactttcatcacctcagtcatcaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119416743 tttcactgccatggtttccactgcggagaaccgccagactttcatcacctcagtcatcaa 119416684
Query: 477 atttctgcgccagtatgggtttgatgggctggacttcgattgggagtaccctggctctcg 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119416683 -tttctgcgccagtatgggtttgatgggctggacttcgattgggagtaccctggctctcg 119416625
Query: 537 cggaagcccttctcaggacaagcatctcttcactgtcctggtccagg 583
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 119416624 cggaagtccttctcaggacaagcatctcttcactgtcctggtccagg 119416578
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 1 gttaaatgctctgcacacggaagatatcctgcgtgattacctggaacgcacaaggtgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119422056 gttaaatgctctgcacacggaagatatcctgcgtgattacctggaacgcacaaggtgtaa 119421997
Query: 61 aaagcaaatccaggctctgctagaccagcaccaacagcaaccatggcaaaattcgttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119421996 aaagcaaatccaggctctgctagaccagcaccaacagcaaccatggcaaaattcgttctc 119421937
Query: 121 ctcacaggt 129
|||||||||
Sbjct: 119421936 ctcacaggt 119421928
Score = 248 bits (125), Expect = 6e-63
Identities = 128/129 (99%)
Strand = Plus / Minus
Query: 581 aggaaatgcgtgaagcttttgagcaggaggccaagcaaaccaagcaggccaggctgctgg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119413754 aggaaatgcgtgaagcttttgagcaggaggccaagcaaaccaagcaggccaggctgctgg 119413695
Query: 641 tcaccgctgcagtagctgctggcgtctccaacatccagtctggctatgagatcccccagc 700
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 119413694 tcaccgctgcagtagctgctggcgtctccaacatccagtctggatatgagatcccccagc 119413635
Query: 701 tgtcccagt 709
|||||||||
Sbjct: 119413634 tgtcccagt 119413626
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 712 ctggactatatccatgtcatgacctatgacctccatgcctcctgggagggctatgctgga 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119413444 ctggactatatccatgtcatgacctatgacctccatgcctcctgggagggctatgctgga 119413385
Query: 772 gagaacagccccctctacaaatacccaactgacactggcagcaacgcttacctcaatgtg 831
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 119413384 gagaacagccccctctacaaatacccaactgacactggcagcgacgcttacctcaatgtg 119413325
Query: 832 g 832
|
Sbjct: 119413324 g 119413324
Score = 131 bits (66), Expect = 9e-28
Identities = 107/114 (93%), Gaps = 5/114 (4%)
Strand = Plus / Minus
Query: 1016 agatctgcaccttcccgaaaaatggagccactcaggcatgggatgccccctca-gaagtg 1074
||||||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 119412344 agatctgcaccttcctgaaaaatggagccactcaggcatgggatg-cccctcaggatgtg 119412286
Query: 1075 ccctatgccctat-agggcaatgaaatgggttgggtatgacaatgtcaagagct 1127
||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 119412285 ccctatg-cctataagggcaatg-aatgggttgggtatgacaatgtcaagagct 119412234
Score = 129 bits (65), Expect = 4e-27
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 633 gctgctggtcaccgctgcagtagctgctggcgtctccaacatccagtctggctatgagat 692
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 119430680 gctgatggtcaccgctgcggtagctgctggcatctccaacatccagtctggctatgagat 119430621
Query: 693 cccccagctgtcccagt 709
|||||||||||||||||
Sbjct: 119430620 cccccagctgtcccagt 119430604
Score = 105 bits (53), Expect = 5e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 364 agccagttgaaaaccctcctggccattggaggctggaactttggaactgcccc 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119417468 agccagttgaaaaccctcctggccattggaggctggaactttggaactgcccc 119417416
Score = 77.8 bits (39), Expect = 1e-11
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 848 actggaaggacaacggggcgccagctgagaagctcatcgttggattccctgcctatgga 906
||||||||| ||| ||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct: 119429244 actggaagggcaatggggccccagctgagaagctcatcattggattcccagcctatgga 119429186
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 126 aggtctggcccttctgctgaatgctcagctaggt 159
||||||||||||||||||||||||||||||||||
Sbjct: 119420472 aggtctggcccttctgctgaatgctcagctaggt 119420439
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,684,483
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 11
Length of query: 1127
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1106
Effective length of database: 2,808,413,156
Effective search space: 3106104950536
Effective search space used: 3106104950536
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)