Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008009
(1004 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002690326.1| PREDICTED: coiled-coil domain containing 28A... 306 1e-83
Alignment gi|XP_612163.4| PREDICTED: coiled-coil domain containing 28A-li... 306 1e-83
Alignment gi|NP_001029477.1| coiled-coil domain containing 28B [Bos tauru... 94 2e-19
>ref|XP_002690326.1| PREDICTED: coiled-coil domain containing 28A-like [Bos taurus].
Length = 339
Score = 306 bits (785), Expect = 1e-83
Identities = 168/251 (66%), Positives = 175/251 (69%)
Frame = +2
Query: 2 FRKQSSLWRREVRDVTXXXXXXXXXXXXXXXXXXXXXXXXQAXXXXXXXXXXXVIRSWPW 181
FRKQ +LWR VRDV+ + VIRSWP
Sbjct: 92 FRKQRALWRLRVRDVSPARAAAVASAAAAVASEAPGSLQGEENHDPLSPQ---VIRSWPG 148
Query: 182 CNKELKTMEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 361
C+KELKTMEERKVKRRSPKSFSAHSTQVVN KKNAIPVSKSTGFSNPASQSTSQRPKLKR
Sbjct: 149 CSKELKTMEERKVKRRSPKSFSAHSTQVVNTKKNAIPVSKSTGFSNPASQSTSQRPKLKR 208
Query: 362 VMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 541
V KEKA+P GGEG+GAQ+ PIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI
Sbjct: 209 VTKEKARPPGGEGRGAQAAPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 268
Query: 542 EQMEHVRGMQEKLARXXXXXXXXXXXXXXDKRKAAXXXXXXXXXXXXXXXXXXIQKLHLA 721
EQMEHVRGMQEKLAR DKRKAA IQKLHLA
Sbjct: 269 EQMEHVRGMQEKLARLNLELYGELEELPEDKRKAASDSNLERLLSDLEELNSSIQKLHLA 328
Query: 722 DAQDVPNTSTS 754
DAQDVPNTSTS
Sbjct: 329 DAQDVPNTSTS 339
>ref|XP_612163.4| PREDICTED: coiled-coil domain containing 28A-like [Bos taurus].
Length = 339
Score = 306 bits (785), Expect = 1e-83
Identities = 168/251 (66%), Positives = 175/251 (69%)
Frame = +2
Query: 2 FRKQSSLWRREVRDVTXXXXXXXXXXXXXXXXXXXXXXXXQAXXXXXXXXXXXVIRSWPW 181
FRKQ +LWR VRDV+ + VIRSWP
Sbjct: 92 FRKQRALWRLRVRDVSPARAAAVASAAAAVASEAPGSLQGEENHDPLSPQ---VIRSWPG 148
Query: 182 CNKELKTMEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 361
C+KELKTMEERKVKRRSPKSFSAHSTQVVN KKNAIPVSKSTGFSNPASQSTSQRPKLKR
Sbjct: 149 CSKELKTMEERKVKRRSPKSFSAHSTQVVNTKKNAIPVSKSTGFSNPASQSTSQRPKLKR 208
Query: 362 VMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 541
V KEKA+P GGEG+GAQ+ PIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI
Sbjct: 209 VTKEKARPPGGEGRGAQAAPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 268
Query: 542 EQMEHVRGMQEKLARXXXXXXXXXXXXXXDKRKAAXXXXXXXXXXXXXXXXXXIQKLHLA 721
EQMEHVRGMQEKLAR DKRKAA IQKLHLA
Sbjct: 269 EQMEHVRGMQEKLARLNLELYGELEELPEDKRKAASDSNLERLLSDLEELNSSIQKLHLA 328
Query: 722 DAQDVPNTSTS 754
DAQDVPNTSTS
Sbjct: 329 DAQDVPNTSTS 339
>ref|NP_001029477.1| coiled-coil domain containing 28B [Bos taurus].
Length = 128
Score = 93.6 bits (231), Expect = 2e-19
Identities = 59/114 (51%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Frame = +2
Query: 203 MEERKVKRRSPKSFSAHSTQVVNAKKNAIPV----SKSTGFSNPASQSTSQRPKLKRVMK 370
ME++K K+RSPK Q + +PV S S P S QR K KRV K
Sbjct: 1 MEDKK-KKRSPKPCLTQPAQPPGTLRR-VPVPTSHSGSLALGLPHLPSPKQRTKFKRVGK 58
Query: 371 EKAKP--QGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFG 526
EK +P GG G G+ TP+QHSFLT+V+DV EME GLL+LLNDFHSG+LQAFG
Sbjct: 59 EKCRPVLAGGAG-GSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFG 111
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,783,083
Number of extensions: 692125
Number of successful extensions: 2130
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 5
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008009
(1004 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533425.1| PREDICTED: similar to CG10874-PA, isoform A [Ca... 316 2e-86
Alignment gi|XP_544438.2| PREDICTED: similar to 1810010N17Rik protein [Ca... 128 1e-29
>ref|XP_533425.1| PREDICTED: similar to CG10874-PA, isoform A [Canis familiaris].
Length = 284
Score = 316 bits (810), Expect = 2e-86
Identities = 168/251 (66%), Positives = 174/251 (69%)
Frame = +2
Query: 2 FRKQSSLWRREVRDVTXXXXXXXXXXXXXXXXXXXXXXXXQAXXXXXXXXXXXVIRSWPW 181
FRKQ LWRR VRDVT Q VIRSWPW
Sbjct: 33 FRKQKELWRRWVRDVTPALAAAVASAAAAAALTSETPGSLQVEEENPHPLLPQVIRSWPW 92
Query: 182 CNKELKTMEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 361
CNKEL+ MEERKVKRRSPKSFSAHSTQ+ +AKKNAIPVSKSTGFSNPASQSTSQRPKLKR
Sbjct: 93 CNKELRAMEERKVKRRSPKSFSAHSTQIASAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 152
Query: 362 VMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 541
VMKEK +PQGGEGKGAQ PIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI
Sbjct: 153 VMKEKTRPQGGEGKGAQPAPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 212
Query: 542 EQMEHVRGMQEKLARXXXXXXXXXXXXXXDKRKAAXXXXXXXXXXXXXXXXXXIQKLHLA 721
EQMEHVRGMQEKLAR DKRK A IQKLHLA
Sbjct: 213 EQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLSDLEELNSSIQKLHLA 272
Query: 722 DAQDVPNTSTS 754
DAQDVPNTS++
Sbjct: 273 DAQDVPNTSST 283
>ref|XP_544438.2| PREDICTED: similar to 1810010N17Rik protein [Canis familiaris].
Length = 286
Score = 128 bits (321), Expect = 1e-29
Identities = 74/133 (55%), Positives = 87/133 (65%), Gaps = 5/133 (3%)
Frame = +2
Query: 203 MEERKVKRRSPKSFSAHSTQVVNAKKNAIPV----SKSTGFSNPASQSTSQRPKLKRVMK 370
ME++K K+RSPK Q + +PV S S P S QR K KRV K
Sbjct: 87 MEDKK-KKRSPKPCLTQPAQAPGTLRR-VPVPTSHSGSLALGLPHLPSPKQRAKFKRVGK 144
Query: 371 EKAKPQ-GGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQ 547
EK +P G G G+ TP+QHSFLT+V+DV EME GLL+LLNDFHSG+LQAFG ECS EQ
Sbjct: 145 EKCRPVLAGSGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQ 204
Query: 548 MEHVRGMQEKLAR 586
+EHVR MQEKLAR
Sbjct: 205 LEHVREMQEKLAR 217
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,114,119
Number of extensions: 707532
Number of successful extensions: 2130
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2120
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008009
(1004 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121225.2| PREDICTED: LOW QUALITY PROTEIN: coiled-coil ... 342 3e-94
>ref|XP_003121225.2| PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing
protein 28A-like [Sus scrofa].
Length = 286
Score = 342 bits (876), Expect = 3e-94
Identities = 184/251 (73%), Positives = 184/251 (73%)
Frame = +2
Query: 2 FRKQSSLWRREVRDVTXXXXXXXXXXXXXXXXXXXXXXXXQAXXXXXXXXXXXVIRSWPW 181
FRKQSSLWRREVRDVT QA VIRSWPW
Sbjct: 36 FRKQSSLWRREVRDVTPAQAAAVALAAAAAAVASEAPESLQAEEEDPDPLLPEVIRSWPW 95
Query: 182 CNKELKTMEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 361
CNKELKTMEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR
Sbjct: 96 CNKELKTMEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKR 155
Query: 362 VMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 541
VMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI
Sbjct: 156 VMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSI 215
Query: 542 EQMEHVRGMQEKLARXXXXXXXXXXXXXXDKRKAAXXXXXXXXXXXXXXXXXXIQKLHLA 721
EQMEHVRGMQEKLAR DKRKAA IQKLHLA
Sbjct: 216 EQMEHVRGMQEKLARLNLELYGELEELPEDKRKAASDSNLDRLLSDLEELNSSIQKLHLA 275
Query: 722 DAQDVPNTSTS 754
DAQDVPNTSTS
Sbjct: 276 DAQDVPNTSTS 286
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,779,197
Number of extensions: 443817
Number of successful extensions: 1351
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008009
(1004 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659069.2| coiled-coil domain-containing protein 28A [Mus ... 270 1e-72
Alignment gi|NP_079731.2| coiled-coil domain-containing protein 28B [Mus ... 125 4e-29
>ref|NP_659069.2| coiled-coil domain-containing protein 28A [Mus musculus].
Length = 184
Score = 270 bits (691), Expect = 1e-72
Identities = 143/184 (77%), Positives = 145/184 (78%)
Frame = +2
Query: 203 MEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTSQRPKLKRVMKEKAK 382
MEERK KR+SPKSFSAHSTQVVNAKKNAIP SKSTGFSNP SQS SQRPKLKRVMKEK K
Sbjct: 1 MEERKAKRKSPKSFSAHSTQVVNAKKNAIPSSKSTGFSNPTSQSASQRPKLKRVMKEKNK 60
Query: 383 PQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVR 562
P GGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVR
Sbjct: 61 PPGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVR 120
Query: 563 GMQEKLARXXXXXXXXXXXXXXDKRKAAXXXXXXXXXXXXXXXXXXIQKLHLADAQDVPN 742
GMQEKLAR DKRKAA IQKLHLADAQDVPN
Sbjct: 121 GMQEKLARLNLELYGELEELPEDKRKAASDANLDRLLSDLEELNSSIQKLHLADAQDVPN 180
Query: 743 TSTS 754
S+S
Sbjct: 181 ASSS 184
>ref|NP_079731.2| coiled-coil domain-containing protein 28B [Mus musculus].
Length = 200
Score = 125 bits (315), Expect = 4e-29
Identities = 73/133 (54%), Positives = 86/133 (64%), Gaps = 5/133 (3%)
Frame = +2
Query: 203 MEERKVKRRSPKSFSAHSTQVVNAKKNAIPV----SKSTGFSNPASQSTSQRPKLKRVMK 370
ME++K K+RSPK Q + +PV S S P S QR K KR K
Sbjct: 1 MEDKK-KKRSPKPCLTQPAQAPGTLRR-VPVPTSHSGSLALGLPHLPSPKQRAKFKRAGK 58
Query: 371 EKAKPQ-GGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQ 547
EK +P G G G+ TP+QHSFLT+V+DV EME GLL+LLNDFHSG+LQAFG ECS EQ
Sbjct: 59 EKCRPVLAGGGGGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQ 118
Query: 548 MEHVRGMQEKLAR 586
+EHVR MQEKLAR
Sbjct: 119 LEHVREMQEKLAR 131
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,133,302
Number of extensions: 608676
Number of successful extensions: 1985
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1980
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008009
(1004 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056254.1| coiled-coil domain-containing protein 28A [Homo... 312 4e-85
Alignment gi|NP_077272.2| coiled-coil domain-containing protein 28B [Homo... 128 7e-30
>ref|NP_056254.1| coiled-coil domain-containing protein 28A [Homo sapiens].
Length = 274
Score = 312 bits (799), Expect = 4e-85
Identities = 161/198 (81%), Positives = 162/198 (81%)
Frame = +2
Query: 161 VIRSWPWCNKELKTMEERKVKRRSPKSFSAHSTQVVNAKKNAIPVSKSTGFSNPASQSTS 340
V+RSWPWCNKELKTMEERKVKRRSPKSFSAH TQVVNAKKNAIPVSKSTGFSNPASQSTS
Sbjct: 77 VLRSWPWCNKELKTMEERKVKRRSPKSFSAHCTQVVNAKKNAIPVSKSTGFSNPASQSTS 136
Query: 341 QRPKLKRVMKEKAKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQA 520
QRPKLKRVMKEK KPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQA
Sbjct: 137 QRPKLKRVMKEKTKPQGGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQA 196
Query: 521 FGNECSIEQMEHVRGMQEKLARXXXXXXXXXXXXXXDKRKAAXXXXXXXXXXXXXXXXXX 700
FGNECSIEQMEHVRGMQEKLAR DKRK A
Sbjct: 197 FGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKTASDSNLDRLLSDLEELNSS 256
Query: 701 IQKLHLADAQDVPNTSTS 754
IQKLHLADAQDVPNTS S
Sbjct: 257 IQKLHLADAQDVPNTSAS 274
>ref|NP_077272.2| coiled-coil domain-containing protein 28B [Homo sapiens].
Length = 200
Score = 128 bits (322), Expect = 7e-30
Identities = 74/133 (55%), Positives = 88/133 (66%), Gaps = 5/133 (3%)
Frame = +2
Query: 203 MEERKVKRRSPKSFSAHSTQVVNAKKNAIPV----SKSTGFSNPASQSTSQRPKLKRVMK 370
M+++K K+RSPK A Q + +PV S S P S QR K KRV K
Sbjct: 1 MDDKK-KKRSPKPCLAQPAQAPGTLRR-VPVPTSHSGSLALGLPHLPSPKQRAKFKRVGK 58
Query: 371 EKAKPQ-GGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQ 547
EK +P G G G+ TP+QHSFLT+V+DV EME GLL+LLNDFHSG+LQAFG ECS EQ
Sbjct: 59 EKCRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQ 118
Query: 548 MEHVRGMQEKLAR 586
+EHVR MQEKLAR
Sbjct: 119 LEHVREMQEKLAR 131
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,726,259
Number of extensions: 712040
Number of successful extensions: 1998
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1987
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008009
(1004 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 436 e-119
>Sscrofa_Chr01
|| Length = 315321322
Score = 436 bits (220), Expect = e-119
Identities = 279/296 (94%), Gaps = 4/296 (1%)
Strand = Plus / Minus
Query: 703 acagaaactacatttggcagatgctcaagatgttccaaacacttctaccagctaaaatga 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28782845 acagaaactacatttggcagatgctcaagatgttccaaacacttctaccagctaaaatga 28782786
Query: 763 agtgcacttgctttctcgtggtttgaagaaaagcagcatcctttactttccagctgaatc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28782785 agtgcacttgctttctcgtggtttgaagaaaagcagcatcctttactttccagctgaatc 28782726
Query: 823 cagtagcagaatcatcttccacaataaggaattaaagt-atcaaagtgccagtgcagtga 881
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 28782725 cagtagcagaatcatcttccacaataaggaattaaagtaatcaaagtgcaagtgcagtga 28782666
Query: 882 ttgctttcacatgctgcttttag-taacgtgccataattca-cgtaactggnagcctang 939
||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| |
Sbjct: 28782665 ttgctttcacatgctgcttttagttaacgtgccataattcaccgtaactggaggcctagg 28782606
Query: 940 ccttgnntgangcttnatcanngaatgtgatacagagc-tttgctgctatgcttta 994
||||| | |||| |||| ||||||||||||||| |||||||||||||||||
Sbjct: 28782605 ccttgttgaaggcttaatcaggaaatgtgatacagagcttttgctgctatgcttta 28782550
Score = 357 bits (180), Expect = 8e-96
Identities = 199/208 (95%)
Strand = Plus / Minus
Query: 153 ttcctgaggtcataagaagctggccttggtgcaataaggaacttaaaacaatggaggagc 212
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28796272 ttccttaggtcataagaagctggccttggtgcaataaggaacttaaaacaatggaggagc 28796213
Query: 213 gcaaagtgaagaggaggagtcctaagtcttttagtgcccactctactcaggttgttaatg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28796212 gcaaagtgaagaggaggagtcctaagtcttttagtgcccactctactcaggttgttaatg 28796153
Query: 273 ccnnnnnnnntgccattccagttagtaaaagcacagggttttcaaatcctgcatcccagt 332
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28796152 ccaaaaaaaatgccattccagttagtaaaagcacagggttttcaaatcctgcatcccagt 28796093
Query: 333 caacttcacagcgaccaaagttaaaaag 360
||||||||||||||||||||||||||||
Sbjct: 28796092 caacttcacagcgaccaaagttaaaaag 28796065
Score = 331 bits (167), Expect = 4e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 359 agagtgatgaaagaaaaggccaaacctcagggtggagaaggcaaaggcgctcagtcaacc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28794339 agagtgatgaaagaaaaggccaaacctcagggtggagaaggcaaaggcgctcagtcaacc 28794280
Query: 419 ccgatccaacactcctttctcaccgatgtctccgatgtccaggagatggagagggggctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28794279 ccgatccaacactcctttctcaccgatgtctccgatgtccaggagatggagagggggctc 28794220
Query: 479 ctcagccttttgaatgacttccattctggaaaactccaagcgtttgg 525
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28794219 ctcagccttttgaatgacttccattctggaaaactccaagcgtttgg 28794173
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 1 cttccgtaaacaaagctcactgtggaggcgcgaggtccgggatgtgaccccagctcaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28798577 cttccgtaaacaaagctcactgtggaggcgcgaggtccgggatgtgaccccagctcaagc 28798518
Query: 61 tgcggcggtagcattggcggctgcagctgcggcggtggcttcggaggccccggagtcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28798517 tgcggcggtagcattggcggctgcagctgcggcggtggcttcggaggccccggagtcttt 28798458
Query: 121 gcaagctgaggaagaggaccccgatccccttcttcctgaggt 162
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28798457 gcaagctgaggaagaggaccccgatccccttcttcctgaggt 28798416
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 524 ggaaatgaatgttccattgaacagatggaacatgttcggggaatgcaagagaaattagct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28789223 ggaaatgaatgttccattgaacagatggaacatgttcggggaatgcaagagaaattagct 28789164
Query: 584 cgcttgaatttggagctctatggagagttagaggaacttcctgaggataagagaaaagca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28789163 cgcttgaatttggagctctatggagagttagaggaacttcctgaggataagagaaaagca 28789104
Query: 644 gccagtgactccaatctcgataggcttctgtctgat 679
||||||||||||||||||||||||||||||||||||
Sbjct: 28789103 gccagtgactccaatctcgataggcttctgtctgat 28789068
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,889,277
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 6
Length of query: 1004
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 983
Effective length of database: 2,808,413,156
Effective search space: 2760670132348
Effective search space used: 2760670132348
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)