Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008010
(866 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002689977.1| PREDICTED: salivary lipocalin-like [Bos taur... 218 7e-57
Alignment gi|XP_590993.1| PREDICTED: salivary lipocalin-like isoform 1 [B... 218 7e-57
Alignment gi|XP_002689979.1| PREDICTED: similar to Equ c1 isoform 2 [Bos ... 211 7e-55
Alignment gi|XP_002689978.1| PREDICTED: similar to Equ c1 isoform 1 [Bos ... 146 3e-35
Alignment gi|XP_001252016.2| PREDICTED: similar to Equ c1 [Bos taurus]. 137 9e-33
Alignment gi|XP_001255650.2| PREDICTED: von Ebner gland protein 1-like [B... 132 3e-31
Alignment gi|XP_002691658.1| PREDICTED: von Ebner gland protein 1-like [B... 132 5e-31
Alignment gi|XP_594082.1| PREDICTED: allergen Bos d 2-like [Bos taurus]. 81 1e-15
Alignment gi|XP_002700512.1| PREDICTED: allergen Bos d 2-like [Bos taurus]. 79 4e-15
Alignment gi|XP_002700514.1| PREDICTED: odorant binding protein-like [Bos... 79 7e-15
>ref|XP_002689977.1| PREDICTED: salivary lipocalin-like [Bos taurus].
Length = 182
Score = 218 bits (554), Expect = 7e-57
Identities = 105/167 (62%), Positives = 132/167 (79%), Gaps = 1/167 (0%)
Frame = +3
Query: 138 KEAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQ 317
+E DVV SNFD +IAGEWYSILLASD +E IEENGSMRVFVE+I VL+NSSL FKF
Sbjct: 16 QEGNSDVVRSNFDIPEIAGEWYSILLASDNREKIEENGSMRVFVEYIDVLENSSLLFKFH 75
Query: 318 RKVNGECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLM 494
KVNG CT+ V D G DGV+T++Y GENKFR+L+VNYS ++I +L N + +F+L+
Sbjct: 76 TKVNGVCTELSLVSDSTGEDGVFTISYDGENKFRILQVNYSQHIIFYLENFS--DSFKLL 133
Query: 495 EFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSG 635
E Y R+PD P+LK +FVEICQ+YG++KEN+IDLTK+DRC Q RG+G
Sbjct: 134 ELYAREPDTSPELKSEFVEICQKYGVVKENVIDLTKVDRCLQERGNG 180
>ref|XP_590993.1| PREDICTED: salivary lipocalin-like isoform 1 [Bos taurus].
Length = 182
Score = 218 bits (554), Expect = 7e-57
Identities = 105/167 (62%), Positives = 132/167 (79%), Gaps = 1/167 (0%)
Frame = +3
Query: 138 KEAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQ 317
+E DVV SNFD +IAGEWYSILLASD +E IEENGSMRVFVE+I VL+NSSL FKF
Sbjct: 16 QEGNSDVVRSNFDIPEIAGEWYSILLASDNREKIEENGSMRVFVEYIDVLENSSLLFKFH 75
Query: 318 RKVNGECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLM 494
KVNG CT+ V D G DGV+T++Y GENKFR+L+VNYS ++I +L N + +F+L+
Sbjct: 76 TKVNGVCTELSLVSDSTGEDGVFTISYDGENKFRILQVNYSQHIIFYLENFS--DSFKLL 133
Query: 495 EFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSG 635
E Y R+PD P+LK +FVEICQ+YG++KEN+IDLTK+DRC Q RG+G
Sbjct: 134 ELYAREPDTSPELKSEFVEICQKYGVVKENVIDLTKVDRCLQERGNG 180
>ref|XP_002689979.1| PREDICTED: similar to Equ c1 isoform 2 [Bos taurus].
Length = 232
Score = 211 bits (537), Expect = 7e-55
Identities = 110/196 (56%), Positives = 141/196 (71%), Gaps = 3/196 (1%)
Frame = +3
Query: 138 KEAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQ 317
+E VV SNFD +I GEW+SILLASD +E IE NGSMR FVE+I +L+NSSL K
Sbjct: 16 QEGNSGVVRSNFDIPEITGEWFSILLASDDREKIE-NGSMRFFVEYISLLENSSLFIKMH 74
Query: 318 RKVNGECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLM 494
KVNG CT+ CD G DGVYTV+Y GENKFR+L+VNYS ++I +L N + +F+L+
Sbjct: 75 TKVNGVCTELPLTCDSTGEDGVYTVSYDGENKFRILQVNYSQHIIFYLENFSD--SFKLL 132
Query: 495 EFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQESSAE*RPPH 674
E Y R+PD P+LK++FVEICQ+YG++KEN+IDLTK+DRC RG+G + S H
Sbjct: 133 ELYAREPDTSPELKNEFVEICQKYGVVKENVIDLTKVDRCLHARGNGVAYDCSL----CH 188
Query: 675 V--GSRIFSSLVPPSS 716
+ SRIFSS+VP SS
Sbjct: 189 IIWSSRIFSSMVPTSS 204
>ref|XP_002689978.1| PREDICTED: similar to Equ c1 isoform 1 [Bos taurus].
Length = 193
Score = 146 bits (368), Expect = 3e-35
Identities = 73/135 (54%), Positives = 98/135 (72%), Gaps = 3/135 (2%)
Frame = +3
Query: 321 KVNGECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLME 497
+VNG CT+ CD G DGVYTV+Y GENKFR+L+VNYS ++I +L N + +F+L+E
Sbjct: 37 RVNGVCTELPLTCDSTGEDGVYTVSYDGENKFRILQVNYSQHIIFYLENFSD--SFKLLE 94
Query: 498 FYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQESSAE*RPPHV 677
Y R+PD P+LK++FVEICQ+YG++KEN+IDLTK+DRC RG+G + S H+
Sbjct: 95 LYAREPDTSPELKNEFVEICQKYGVVKENVIDLTKVDRCLHARGNGVAYDCSL----CHI 150
Query: 678 --GSRIFSSLVPPSS 716
SRIFSS+VP SS
Sbjct: 151 IWSSRIFSSMVPTSS 165
>ref|XP_001252016.2| PREDICTED: similar to Equ c1 [Bos taurus].
Length = 142
Score = 137 bits (346), Expect = 9e-33
Identities = 62/106 (58%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Frame = +3
Query: 321 KVNGECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLME 497
+VNG CT+ CD G DGVYTV+Y GENKFR+L+VNYS ++I +L N + +F+L+E
Sbjct: 37 RVNGVCTELPLTCDSTGEDGVYTVSYDGENKFRILQVNYSQHIIFYLENFSD--SFKLLE 94
Query: 498 FYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSG 635
Y R+PD P+LK++FVEICQ+YG++KEN+IDLTK+DRC Q RG+G
Sbjct: 95 LYAREPDTSPELKNEFVEICQKYGVVKENVIDLTKVDRCLQARGNG 140
>ref|XP_001255650.2| PREDICTED: von Ebner gland protein 1-like [Bos taurus].
Length = 258
Score = 132 bits (333), Expect = 3e-31
Identities = 60/148 (40%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +3
Query: 150 QDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVN 329
Q +V N+D SK++G WYSI +A+D ++ IEE+G +R+F+E I+V+++ L F ++
Sbjct: 21 QRIVQRNYDISKVSGTWYSISMAADNRKRIEEDGDLRIFIEGIQVVEDGGLKLSFHFMLH 80
Query: 330 GECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYG 506
ECTD VC K G G YT+ Y GEN R+LE +Y YVILH+ N Q++ YG
Sbjct: 81 AECTDVAVVCGKTGKSGEYTITYLGENSLRILEADYQRYVILHMRNFRNGTATQVLALYG 140
Query: 507 RKPDVEPKLKDKFVEICQQYGIIKENII 590
R P+++ D+F + C+ +G+ E +I
Sbjct: 141 RFPELKSSFLDRFHKACRSHGLGPEKVI 168
>ref|XP_002691658.1| PREDICTED: von Ebner gland protein 1-like [Bos taurus].
Length = 258
Score = 132 bits (331), Expect = 5e-31
Identities = 60/148 (40%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +3
Query: 150 QDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVN 329
Q +V N+D SK++G WYSI +A+D ++ IEE+G +R+F+E I+V+++ L F ++
Sbjct: 21 QRIVQRNYDISKVSGTWYSISMAADNRKRIEEDGDLRIFIEGIQVVEDGGLKLSFHFMLH 80
Query: 330 GECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYG 506
ECTD VC K G G YT+ Y GEN R+LE +Y YVILH+ N Q++ YG
Sbjct: 81 AECTDVAVVCGKTGKSGEYTINYLGENSLRILEADYQRYVILHMRNFRNGTATQVLALYG 140
Query: 507 RKPDVEPKLKDKFVEICQQYGIIKENII 590
R P+++ D+F + C+ +G+ E +I
Sbjct: 141 RFPELKSSFLDRFHKACRSHGLGPEKVI 168
>ref|XP_594082.1| PREDICTED: allergen Bos d 2-like [Bos taurus].
Length = 171
Score = 81.3 bits (199), Expect = 1e-15
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Frame = +3
Query: 165 SNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDN-SSLAFKFQRKVNGECT 341
+ D S+I G+W+SIL+A+D + IEE G +R ++ + D SSL+ F K +CT
Sbjct: 21 AELDPSQITGDWHSILMAADNIQKIEEGGPLRAYIRQLECTDRCSSLSVNFYAKFPSQCT 80
Query: 342 DFYAVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDV 521
V ++ GD VY V Y G N F L+ V+ + + ++ N +G K+ ++ + +
Sbjct: 81 FLNVVAEREGD-VYHVGYMGSNFFELIPVS-ENTLAVYGENFDGVKSTKVTQLLAKGDHA 138
Query: 522 EPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQ 620
+ ++ E+ ++ GI E+I DLT+ D C Q
Sbjct: 139 TQEDIQQYEELNRERGIPIEHIEDLTQTDDCPQ 171
>ref|XP_002700512.1| PREDICTED: allergen Bos d 2-like [Bos taurus].
Length = 188
Score = 79.3 bits (194), Expect = 4e-15
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Frame = +3
Query: 165 SNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDN-SSLAFKFQRKVNGECT 341
+ D S+I G+W+SIL+A+D + IEE G +R ++ + D SSL+ F V+G C
Sbjct: 21 AELDPSQITGDWHSILMAADNIQKIEEGGPLRAYIRQLECTDRCSSLSVNFYANVDGTCL 80
Query: 342 DFYAVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDV 521
V ++ V + Y G N F+L+ V+ + ++ ++ N +G K ++ + G+
Sbjct: 81 LLTEVAERQEGYVDELKYEGTNTFKLIHVS-DNMLVTYIENDDGSKKTKITDGVGKGDSF 139
Query: 522 EPKLKDKFVEICQQYGIIKENIIDLTKIDR 611
P+ K+ E+ + GI ENI ++ + D+
Sbjct: 140 TPEELQKYQEVNTERGIPNENIENVIETDK 169
>ref|XP_002700514.1| PREDICTED: odorant binding protein-like [Bos taurus].
Length = 172
Score = 78.6 bits (192), Expect = 7e-15
Identities = 46/149 (30%), Positives = 82/149 (55%), Gaps = 2/149 (1%)
Frame = +3
Query: 174 DASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRV-LDNSSLAFKFQRKVNGECTDFY 350
DAS+ G W + A++ E I E F+ ++ +N ++ F K NGEC + Y
Sbjct: 23 DASQFTGRWLTYYTAANNIEKITEGAPFHAFMRYLEFDEENGTILMHFYVKENGECIEKY 82
Query: 351 AVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGD-KTFQLMEFYGRKPDVEP 527
A K + Y V Y G N+F+L+ + ++ ++ H VNV+ D K +L++ +G+ +VEP
Sbjct: 83 ASGTKE-ENFYAVDYAGHNEFQLIRGD-ANSLLTHNVNVDEDGKETELVQLFGKGNNVEP 140
Query: 528 KLKDKFVEICQQYGIIKENIIDLTKIDRC 614
+ K+++ ++ GI +ENI++ D C
Sbjct: 141 EYKEEYYNTVREKGIPEENILNFIDNDNC 169
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,631,412
Number of extensions: 923823
Number of successful extensions: 2693
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 2655
Number of HSP's successfully gapped: 23
Length of query: 288
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 187
Effective length of database: 14,339,486
Effective search space: 2681483882
Effective search space used: 2681483882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008010
(866 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855342.1| PREDICTED: similar to alpha-2u globulin PGCL4 [... 208 5e-54
Alignment gi|XP_849629.1| PREDICTED: similar to lipocalin 9 [Canis famili... 104 9e-23
Alignment gi|NP_001003189.1| minor allergen Can f 2 precursor [Canis lupu... 62 5e-10
Alignment gi|NP_001177855.1| allergen Can f 4 [Canis lupus familiaris]. 61 2e-09
Alignment gi|XP_548384.2| PREDICTED: similar to Glycodelin precursor (GD)... 53 3e-07
Alignment gi|XP_849705.1| PREDICTED: similar to Glycodelin precursor (GD)... 53 4e-07
Alignment gi|XP_848918.1| PREDICTED: similar to MSFL2541 [Canis familiari... 52 9e-07
Alignment gi|XP_548385.2| PREDICTED: similar to Glycodelin precursor (GD)... 50 4e-06
>ref|XP_855342.1| PREDICTED: similar to alpha-2u globulin PGCL4 [Canis familiaris].
Length = 190
Score = 208 bits (530), Expect = 5e-54
Identities = 106/174 (60%), Positives = 123/174 (70%), Gaps = 1/174 (0%)
Frame = +3
Query: 141 EAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQR 320
E DVV NFD SKI+G+WYSILLASD KE IEENGSMRVFV+ I VL NSSL F
Sbjct: 17 EEENDVVKGNFDISKISGDWYSILLASDIKEKIEENGSMRVFVKDIEVLSNSSLIFTMHT 76
Query: 321 KVNGECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLME 497
KVNG+CT +C+K DG Y V + G N FR++E Y DY+I HL NVN ++ FQLME
Sbjct: 77 KVNGKCTKISLICNKTEKDGEYDVVHDGYNLFRIIETAYEDYIIFHLNNVNQEQEFQLME 136
Query: 498 FYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQESSAE 659
YGRKPDV PK+K+KFV CQ I KENI+DLT++DRC Q R S Q SSAE
Sbjct: 137 LYGRKPDVSPKVKEKFVRYCQGMEIPKENILDLTQVDRCLQARQSEAAQVSSAE 190
>ref|XP_849629.1| PREDICTED: similar to lipocalin 9 [Canis familiaris].
Length = 257
Score = 104 bits (260), Expect = 9e-23
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Frame = +3
Query: 150 QDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVN 329
Q +V N+D +K++G WYS+ +ASD + IE++G +RVF+++I L++ SL F FQ V
Sbjct: 21 QAIVRKNYDMAKVSGVWYSVSMASDDMKRIEKDGDLRVFIQNIESLEDGSLKFNFQFMVL 80
Query: 330 GECTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYG 506
GEC VC+K +G YTV Y G+N+ L E +Y Y+ HL N+ ++ Y
Sbjct: 81 GECVKVAVVCEKTDRNGEYTVNYEGDNRVLLSETDYKLYITFHLRNMRNGTETNVLALY- 139
Query: 507 RKPDVEPKLKDKFVEICQQYGIIKENIIDLT 599
+C++YG+ +NI+ L+
Sbjct: 140 ---------------VCRKYGLGPQNILSLS 155
>ref|NP_001003189.1| minor allergen Can f 2 precursor [Canis lupus familiaris].
Length = 180
Score = 62.4 bits (150), Expect = 5e-10
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Frame = +3
Query: 183 KIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDFYAVCD 362
+++G W+S+ LAS+ + I+ G RVF+ + D + L +G+C
Sbjct: 32 ELSGRWHSVALASNKSDLIKPWGHFRVFIHSMSAKDGN-LHGDILIPQDGQCEKVSLTAF 90
Query: 363 KVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVEPKLKD 539
K + + Y+G N L EV+ Y+IL+++N D T + R +
Sbjct: 91 KTATSNKFDLEYWGHNDLYLAEVDPKSYLILYMINQYNDDTSLVAHLMVRDLSRQQDFLP 150
Query: 540 KFVEICQQYGIIKENIIDLTKIDRC 614
F +C+ G+ K+ I+ L+ DRC
Sbjct: 151 AFESVCEDIGLHKDQIVVLSDDDRC 175
>ref|NP_001177855.1| allergen Can f 4 [Canis lupus familiaris].
Length = 174
Score = 60.8 bits (146), Expect = 2e-09
Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +3
Query: 180 SKIAGEWYSILLASDAKENIEENGSMRVFVEHIRV-LDNSSLAFKFQRKVNGECTDFYAV 356
++++G W ++ ++S+ + I +NG R+++ I V + ++F F KV+GEC +
Sbjct: 25 TQVSGPWKTLYISSNNLDKIGDNGPFRIYMRGINVDIPRLKMSFNFYVKVDGECVENSVG 84
Query: 357 CDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNG-DKTFQLMEFYGRKPDVEPKL 533
D + Y G N FR++++ + +I + VNV+ K ++ GR V +
Sbjct: 85 ASIGRDNLIKGEYNGGNYFRIIDMT-PNALIGYDVNVDSKGKITKVALLMGRGAHVNEED 143
Query: 534 KDKFVEICQQYGIIKENIIDLTKIDRC 614
KF ++ ++ GI +ENII L D C
Sbjct: 144 IAKFKKLSREKGIPEENIIYLGDTDNC 170
>ref|XP_548384.2| PREDICTED: similar to Glycodelin precursor (GD)
(Pregnancy-associated endometrial alpha-2 globulin)
(PEG) (PAEG) (Placental protein 14) (PP14)
(Progesterone-associated endometrial protein)
(Progestagen-associated endometrial protein) [Canis
familiaris].
Length = 214
Score = 53.1 bits (126), Expect = 3e-07
Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLA-SDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTD 344
+ D K+AG W+S+ +A SD E +RV+++ +R +L ++ +G C +
Sbjct: 62 DLDLQKVAGTWHSMAMAASDISLLDAETAPLRVYIQELRPTPQDNLEIVLRKWEDGRCAE 121
Query: 345 FYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDV 521
+ +K + + Y EN+ LL+ +Y +Y+ + N + + + + R +V
Sbjct: 122 QKVLAEKTEVPAEFKINYVEENQIFLLDTDYDNYLFFCMENTDAPQQSLMCQCLARTLEV 181
Query: 522 EPKLKDKF 545
+ ++ +KF
Sbjct: 182 DNEVMEKF 189
>ref|XP_849705.1| PREDICTED: similar to Glycodelin precursor (GD)
(Pregnancy-associated endometrial alpha-2 globulin)
(PEG) (PAEG) (Placental protein 14) (PP14)
(Progesterone-associated endometrial protein)
(Progestagen-associated endometrial protein) [Canis
familiaris].
Length = 179
Score = 52.8 bits (125), Expect = 4e-07
Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLA-SDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTD 344
+ D ++AG W+S+ +A SD E +RV+++ +R +L + N C
Sbjct: 25 DLDIRQVAGTWHSMAMAASDISLLDAETAPLRVYIQELRPTPQDNLEIVLHEQENHACVK 84
Query: 345 FYAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHL-VNVNGDKTFQLMEFYGRKPD 518
+ K D V+TV Y GE K +L+ +Y+ Y+ + + ++ + ++ R +
Sbjct: 85 RTIMAQKTEDPAVFTVDYQGERKISMLDTDYTHYMFFCVEAPLPTTQSGLMCQYLARTLE 144
Query: 519 VEPKLKDKFVEICQQYGIIKENIIDLTK 602
V+ ++ +KF + + ++DL++
Sbjct: 145 VDNEVMEKFDRALKTLPVHMRIVLDLSQ 172
>ref|XP_848918.1| PREDICTED: similar to MSFL2541 [Canis familiaris].
Length = 186
Score = 51.6 bits (122), Expect = 9e-07
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 1/154 (0%)
Frame = +3
Query: 156 VVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGE 335
+V +FDA K +G WY + + SD K + + + + IR + +L+ +
Sbjct: 25 LVQPDFDAKKFSGLWYVVSMVSDCKVFLGKKDHLLMSSRTIRAMPGGNLSVHMEFPRADG 84
Query: 336 CTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRK 512
C A +VG +G + V G R+ + +Y + +L++ +++ Y R
Sbjct: 85 CHQLDAEYLRVGSEGHFRVPALGYLDVRVADTDYDTFAVLYIYKELEGALSTMVQLYSRT 144
Query: 513 PDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRC 614
+ P+ F + G+ + ++ L K D C
Sbjct: 145 QEASPQATKAFQDFYPTVGLPNDMMVMLPKSDVC 178
>ref|XP_548385.2| PREDICTED: similar to Glycodelin precursor (GD)
(Pregnancy-associated endometrial alpha-2 globulin)
(PEG) (PAEG) (Placental protein 14) (PP14)
(Progesterone-associated endometrial protein)
(Progestagen-associated endometrial protein) [Canis
familiaris].
Length = 214
Score = 49.7 bits (117), Expect = 4e-06
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLA-SDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTD 344
+ D K+AG W+S+ +A SD E +RV+++ +R +L ++ + C +
Sbjct: 62 DLDLQKVAGTWHSMAMAASDISLLDAETAPLRVYIQELRPTPQDNLEIVLRKWEDNRCVE 121
Query: 345 FYAVCDKVGDGV-YTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDV 521
+K +++ Y EN+ LL+ +Y +Y+ + N N + + + R +V
Sbjct: 122 KKVFAEKTELATRFSIDYVEENQIFLLDTDYDNYLFFCMENTNAPQQSLMCQCLARTLEV 181
Query: 522 EPKLKDKF 545
++ KF
Sbjct: 182 NNEVIGKF 189
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,114,695
Number of extensions: 952237
Number of successful extensions: 2692
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2676
Number of HSP's successfully gapped: 8
Length of query: 288
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 186
Effective length of database: 15,474,232
Effective search space: 2878207152
Effective search space used: 2878207152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008010
(866 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998979.1| salivary lipocalin precursor [Sus scrofa]. 361 e-100
Alignment gi|XP_003134963.2| PREDICTED: odorant-binding protein-like [Sus... 77 2e-14
Alignment gi|XP_003122325.1| PREDICTED: uterocalin isoform 2 [Sus scrofa]. 77 2e-14
Alignment gi|XP_003122324.1| PREDICTED: uterocalin isoform 1 [Sus scrofa]. 77 2e-14
Alignment gi|NP_998961.1| odorant-binding protein [Sus scrofa]. 76 2e-14
Alignment gi|XP_003122388.2| PREDICTED: lipocalin-15-like isoform 1 [Sus ... 54 8e-08
Alignment gi|NP_998919.1| beta-lactoglobulin-1A/1C precursor [Sus scrofa]. 50 2e-06
Alignment gi|XP_003360268.1| PREDICTED: odorant-binding protein-like [Sus... 48 6e-06
>ref|NP_998979.1| salivary lipocalin precursor [Sus scrofa].
Length = 191
Score = 361 bits (926), Expect = e-100
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +3
Query: 126 ASSHKEAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLA 305
ASSHKEAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLA
Sbjct: 14 ASSHKEAGQDVVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLA 73
Query: 306 FKFQRKVNGECTDFYAVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTF 485
FKFQRKVNGECTDFYAVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTF
Sbjct: 74 FKFQRKVNGECTDFYAVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTF 133
Query: 486 QLMEFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQESSAE 659
QLMEFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQESSAE
Sbjct: 134 QLMEFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGGVQESSAE 191
>ref|XP_003134963.2| PREDICTED: odorant-binding protein-like [Sus scrofa].
Length = 173
Score = 76.6 bits (187), Expect = 2e-14
Identities = 45/149 (30%), Positives = 82/149 (55%), Gaps = 2/149 (1%)
Frame = +3
Query: 174 DASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSS-LAFKFQRKVNGECTDFY 350
DAS+I+G+W ++ +AS E ENG+++ ++ I + S + F F KVNG+C
Sbjct: 23 DASQISGDWNTLYVASTNPEKTSENGTLKPYLRSITFENGKSKIIFTFFIKVNGKCRASS 82
Query: 351 AVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHL-VNVNGDKTFQLMEFYGRKPDVEP 527
A K+ VY + Y G+N+F + V+ + ++ + V+ G K+ + G+ E
Sbjct: 83 AEGRKIAPNVYEIDYSGKNEFHIDHVSKNSMIVYDINVDEEGKKSI-ITALNGKGKKAEE 141
Query: 528 KLKDKFVEICQQYGIIKENIIDLTKIDRC 614
+ KF E+ ++ GI +ENI+++ + D C
Sbjct: 142 QDLKKFKELTRKKGIPEENIVNVIETDNC 170
>ref|XP_003122325.1| PREDICTED: uterocalin isoform 2 [Sus scrofa].
Length = 196
Score = 76.6 bits (187), Expect = 2e-14
Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ + + G W+S +AS+ + ++ G+ R+ + HI+V + L F +++NG C
Sbjct: 43 NFNETLVGGNWFSAAMASNQPQLMKAAGARRILIHHIQVTPRA-LRFHLHQRINGVCVPT 101
Query: 348 YAVCDKVGDGV-YTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+K Y + Y G+N+ L +V+ Y I+ + + ++ R P+V
Sbjct: 102 VMTANKTKKKFQYLLEYIGQNRVFLEKVDPKSYAIICTHHKARGREMVVVTLLSRTPEVS 161
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
F+ C+++G+ + ++IDLT+ DRC R
Sbjct: 162 RDTLRMFLSYCRKHGLHEPSVIDLTRTDRCLHAR 195
>ref|XP_003122324.1| PREDICTED: uterocalin isoform 1 [Sus scrofa].
Length = 180
Score = 76.6 bits (187), Expect = 2e-14
Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ + + G W+S +AS+ + ++ G+ R+ + HI+V + L F +++NG C
Sbjct: 27 NFNETLVGGNWFSAAMASNQPQLMKAAGARRILIHHIQVTPRA-LRFHLHQRINGVCVPT 85
Query: 348 YAVCDKVGDGV-YTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+K Y + Y G+N+ L +V+ Y I+ + + ++ R P+V
Sbjct: 86 VMTANKTKKKFQYLLEYIGQNRVFLEKVDPKSYAIICTHHKARGREMVVVTLLSRTPEVS 145
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
F+ C+++G+ + ++IDLT+ DRC R
Sbjct: 146 RDTLRMFLSYCRKHGLHEPSVIDLTRTDRCLHAR 179
>ref|NP_998961.1| odorant-binding protein [Sus scrofa].
Length = 173
Score = 76.3 bits (186), Expect = 2e-14
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Frame = +3
Query: 174 DASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAF-KFQRKVNGECTDFY 350
D +++G+W + + S E I EN +VF+ I D S + F K NG C +F
Sbjct: 23 DPFELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFS 82
Query: 351 AVCDKVGDGVYTVAYYGENKFRLLEVNYSDYVILHLVNVN----GDKTFQLMEFYGRKPD 518
+ K Y V Y G NKF V+Y+ L + N+N GDKT + G+ D
Sbjct: 83 LIGTKQEGNTYDVNYAGNNKF---VVSYASETALIISNINVDEEGDKTI-MTGLLGKGTD 138
Query: 519 VEPKLKDKFVEICQQYGIIKENIIDLTKIDRC 614
+E + +KF E+ ++ GI +ENI+++ + D C
Sbjct: 139 IEDQDLEKFKEVTRENGIPEENIVNIIERDDC 170
>ref|XP_003122388.2| PREDICTED: lipocalin-15-like isoform 1 [Sus scrofa].
Length = 184
Score = 54.3 bits (129), Expect = 8e-08
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
Frame = +3
Query: 144 AGQDV-VTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQR 320
AG +V V +FDA K AG WY + + SD K + +F ++ +L+ +
Sbjct: 18 AGAEVLVQPDFDAKKFAGLWYVVAMVSDCKVFRGSKDHLLMFTSNVTATAEGNLSVHMEV 77
Query: 321 KVNGECTDFYAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLME 497
C A + G G + V G R+++ +YS + ++++ L++
Sbjct: 78 PGPDGCNQMDAEYLRTGSQGHFRVPTLGYLDVRVVDTDYSSFAVVYIYKELEGALSTLVQ 137
Query: 498 FYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLRGSGG 638
Y R + P+ F + G+ + ++ L K D C SGG
Sbjct: 138 LYSRTQEASPQAMKTFQDFYPTVGLPHDMMVALPKSDAC----SSGG 180
>ref|NP_998919.1| beta-lactoglobulin-1A/1C precursor [Sus scrofa].
Length = 178
Score = 50.1 bits (118), Expect = 2e-06
Identities = 27/131 (20%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = +3
Query: 159 VTSNFDASKIAGEWYSILLA-SDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGE 335
+ ++ D K+AG W+++ +A SD ++ ++ +VE ++ L Q++ N +
Sbjct: 24 IMTDLDTQKVAGTWHTVAMAVSDVSLLDAKSSPLKAYVEGLKPTPEGDLEILLQKRENDK 83
Query: 336 CTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRK 512
C + K V+ + EN+ LL+ +Y +++L + N + + + R
Sbjct: 84 CAQEVLLAKKTDIPAVFKINALDENQLFLLDTDYDSHLLLCMENSASPEHSLVCQSLART 143
Query: 513 PDVEPKLKDKF 545
+V+ ++++KF
Sbjct: 144 LEVDDQIREKF 154
>ref|XP_003360268.1| PREDICTED: odorant-binding protein-like [Sus scrofa].
Length = 298
Score = 48.1 bits (113), Expect = 6e-06
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Frame = +3
Query: 174 DASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLD-NSSLAFKFQRKVNGE----- 335
D ++I+G+W ++ +A+ +E ENG ++ I + N+ + FKF K +
Sbjct: 23 DPTQISGKWKTLYVAASNREKTSENGPFHAYMHWIHFENGNNKIFFKFFVKCHQAPAVPR 82
Query: 336 --------CTDFYAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQ 488
F+ KV D G+N+ + V+ + +IL+ +NV+ DK
Sbjct: 83 FSKHFVVMTERFHHTIQKVPPDSECPSVDAGKNELHFVHVS-KNALILYNINVDKDKKTI 141
Query: 489 LMEFYGRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKID 608
E R E + KF E+ +Q GI +EN++++ + D
Sbjct: 142 STELNSRGDKAEEQDFKKFKEVMRQKGIPEENVMNVPETD 181
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,612,913
Number of extensions: 591885
Number of successful extensions: 1732
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1724
Number of HSP's successfully gapped: 8
Length of query: 288
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,904,026
Effective search space: 1691764940
Effective search space used: 1691764940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008010
(866 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032674.1| major urinary protein 4 precursor [Mus musculus]. 180 1e-45
Alignment gi|NP_032675.2| major urinary protein 5 precursor [Mus musculus]. 170 1e-42
Alignment gi|NP_001074754.1| major urinary protein (Mup)-like precursor [... 168 4e-42
Alignment gi|XP_003085599.1| PREDICTED: major urinary protein 5-like isof... 168 4e-42
Alignment gi|XP_003085598.1| PREDICTED: major urinary protein 5-like isof... 168 4e-42
Alignment gi|XP_003085597.1| PREDICTED: major urinary protein 5-like [Mus... 168 4e-42
Alignment gi|XP_003086418.1| PREDICTED: major urinary protein 5-like isof... 168 4e-42
Alignment gi|XP_003086417.1| PREDICTED: major urinary protein 5-like isof... 168 4e-42
Alignment gi|NP_001012323.1| major urinary protein 20 [Mus musculus]. 168 4e-42
Alignment gi|NP_001034633.1| major urinary protein 3 precursor [Mus muscu... 162 3e-40
>ref|NP_032674.1| major urinary protein 4 precursor [Mus musculus].
Length = 178
Score = 180 bits (457), Expect = 1e-45
Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
N + KI GEW+SILLASD +E IEE+GSMRVFVEHI VL+NS LAFKF ++GEC++
Sbjct: 25 NLNVEKINGEWFSILLASDKREKIEEHGSMRVFVEHIHVLENS-LAFKFHTVIDGECSEI 83
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G N F +L+ +Y +Y++ HL+N KTFQLME YGRK D+
Sbjct: 84 FLVADKTEKAGEYSVMYDGFNTFTILKTDYDNYIMFHLINEKDGKTFQLMELYGRKADLN 143
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KFV++C+++GIIKENIIDLTK +RC + R
Sbjct: 144 SDIKEKFVKLCEEHGIIKENIIDLTKTNRCLKAR 177
>ref|NP_032675.2| major urinary protein 5 precursor [Mus musculus].
Length = 180
Score = 170 bits (430), Expect = 1e-42
Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
N + KI G+W+SILLASD +E IEE+G+MRVFVEHI VL+NS LAFKF ++ ECT+
Sbjct: 27 NLNVEKINGKWFSILLASDKREKIEEHGTMRVFVEHIDVLENS-LAFKFHTVIDEECTEI 85
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
Y V DK G Y+V Y G N F +L+ +Y +Y++ HL+N ++ FQLME +GR+PD+
Sbjct: 86 YLVADKTEKAGEYSVTYDGFNTFTILKTDYDNYIMFHLINKKDEENFQLMELFGREPDLS 145
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++C+++GI++ENIIDL+ +RC Q R
Sbjct: 146 SDIKEKFAKLCEEHGIVRENIIDLSNANRCLQAR 179
>ref|NP_001074754.1| major urinary protein (Mup)-like precursor [Mus musculus].
Length = 179
Score = 168 bits (426), Expect = 4e-42
Identities = 79/154 (51%), Positives = 111/154 (72%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ KI GEWY+I+LASD + IEE+G MR+FVEHI VL+NS L FKF ++ EC++
Sbjct: 26 NFNVEKINGEWYTIILASDKRAKIEEHGIMRLFVEHIHVLENS-LGFKFHTVIDEECSEI 84
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G KF +L+ +Y +Y++ HL+N +TFQLM YGR+PD+
Sbjct: 85 FLVADKTEKAGEYSVTYDGFKKFTVLKTDYDNYIMFHLINEMNGETFQLMSLYGREPDLN 144
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KFV++C+++GII+ENIID TK +RC Q R
Sbjct: 145 SDIKEKFVKLCEEHGIIRENIIDFTKTNRCLQAR 178
>ref|XP_003085599.1| PREDICTED: major urinary protein 5-like isoform 2 [Mus musculus].
Length = 181
Score = 168 bits (426), Expect = 4e-42
Identities = 78/154 (50%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ KI GEWY+I+LA+D +E IEE+GSMRVFVE+I VL+NS LA KF +N EC++
Sbjct: 28 NFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENS-LALKFHIIINEECSEI 86
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G N F +L+ +Y +Y+++HL+N +TFQLME YGR+PD+
Sbjct: 87 FLVADKTEKAGEYSVTYDGSNTFTILKTDYDNYIMIHLINKKDGETFQLMELYGREPDLS 146
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++ +++GI++ENIIDLT +RC + R
Sbjct: 147 SDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|XP_003085598.1| PREDICTED: major urinary protein 5-like isoform 1 [Mus musculus].
Length = 181
Score = 168 bits (426), Expect = 4e-42
Identities = 78/154 (50%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ KI GEWY+I+LA+D +E IEE+GSMRVFVE+I VL+NS LA KF +N EC++
Sbjct: 28 NFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENS-LALKFHIIINEECSEI 86
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G N F +L+ +Y +Y+++HL+N +TFQLME YGR+PD+
Sbjct: 87 FLVADKTEKAGEYSVTYDGSNTFTILKTDYDNYIMIHLINKKDGETFQLMELYGREPDLS 146
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++ +++GI++ENIIDLT +RC + R
Sbjct: 147 SDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|XP_003085597.1| PREDICTED: major urinary protein 5-like [Mus musculus].
Length = 181
Score = 168 bits (426), Expect = 4e-42
Identities = 78/154 (50%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ KI GEWY+I+LA+D +E IEE+GSMRVFVE+I VL+NS LA KF +N EC++
Sbjct: 28 NFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENS-LALKFHIIINEECSEI 86
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G N F +L+ +Y +Y+++HL+N +TFQLME YGR+PD+
Sbjct: 87 FLVADKTEKAGEYSVTYDGSNTFTILKTDYDNYIMIHLINKKDGETFQLMELYGREPDLS 146
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++ +++GI++ENIIDLT +RC + R
Sbjct: 147 SDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|XP_003086418.1| PREDICTED: major urinary protein 5-like isoform 2 [Mus musculus].
Length = 181
Score = 168 bits (426), Expect = 4e-42
Identities = 78/154 (50%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ KI GEWY+I+LA+D +E IEE+GSMRVFVE+I VL+NS LA KF +N EC++
Sbjct: 28 NFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENS-LALKFHIIINEECSEI 86
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G N F +L+ +Y +Y+++HL+N +TFQLME YGR+PD+
Sbjct: 87 FLVADKTEKAGEYSVTYDGSNTFTILKTDYDNYIMIHLINKKDGETFQLMELYGREPDLS 146
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++ +++GI++ENIIDLT +RC + R
Sbjct: 147 SDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|XP_003086417.1| PREDICTED: major urinary protein 5-like isoform 1 [Mus musculus].
Length = 181
Score = 168 bits (426), Expect = 4e-42
Identities = 78/154 (50%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ KI GEWY+I+LA+D +E IEE+GSMRVFVE+I VL+NS LA KF +N EC++
Sbjct: 28 NFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENS-LALKFHIIINEECSEI 86
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G N F +L+ +Y +Y+++HL+N +TFQLME YGR+PD+
Sbjct: 87 FLVADKTEKAGEYSVTYDGSNTFTILKTDYDNYIMIHLINKKDGETFQLMELYGREPDLS 146
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++ +++GI++ENIIDLT +RC + R
Sbjct: 147 SDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|NP_001012323.1| major urinary protein 20 [Mus musculus].
Length = 181
Score = 168 bits (426), Expect = 4e-42
Identities = 78/154 (50%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ KI GEWY+I+LA+D +E IEE+GSMRVFVE+I VL+NS LA KF +N EC++
Sbjct: 28 NFNVEKINGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLENS-LALKFHIIINEECSEI 86
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
+ V DK G Y+V Y G N F +L+ +Y +Y+++HL+N +TFQLME YGR+PD+
Sbjct: 87 FLVADKTEKAGEYSVTYDGSNTFTILKTDYDNYIMIHLINKKDGETFQLMELYGREPDLS 146
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++ +++GI++ENIIDLT +RC + R
Sbjct: 147 SDIKEKFAQLSEEHGIVRENIIDLTNANRCLEAR 180
>ref|NP_001034633.1| major urinary protein 3 precursor [Mus musculus].
Length = 184
Score = 162 bits (410), Expect = 3e-40
Identities = 77/154 (50%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
NF+ +I+G W+SI ASD +E IEE+GSMR FVE+I VL+NS L FKF VN ECT+
Sbjct: 31 NFNVEQISGYWFSIAEASDEREKIEEHGSMRAFVENITVLENS-LVFKFHLIVNEECTEM 89
Query: 348 YAVCDKVGD-GVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
A+ ++ G+Y + Y G N F +L+ +Y +Y+++HL+N KTFQLME YGR+PD+
Sbjct: 90 TAIGEQTEKAGIYYMNYDGFNTFSILKTDYDNYIMIHLINKKDGKTFQLMELYGREPDLS 149
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRCFQLR 626
+K+KF ++C+++GII+ENIIDLT ++RC + R
Sbjct: 150 LDIKEKFAKLCEEHGIIRENIIDLTNVNRCLEAR 183
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,487,592
Number of extensions: 802917
Number of successful extensions: 2401
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 2335
Number of HSP's successfully gapped: 48
Length of query: 288
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 188
Effective length of database: 12,613,959
Effective search space: 2371424292
Effective search space used: 2371424292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008010
(866 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001676.1| epididymal-specific lipocalin-9 [Homo sapien... 107 2e-23
Alignment gi|NP_976222.1| lipocalin-15 precursor [Homo sapiens]. 57 3e-08
Alignment gi|NP_000945.3| prostaglandin-H2 D-isomerase [Homo sapiens]. 51 1e-06
>ref|NP_001001676.1| epididymal-specific lipocalin-9 [Homo sapiens].
Length = 176
Score = 107 bits (266), Expect = 2e-23
Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Frame = +3
Query: 156 VVTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGE 335
V+ N++ ++++G WYSI +ASD I+ENG +RVFV +I L N SL F F+ V GE
Sbjct: 23 VMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFVRNIEHLKNGSLIFDFEYMVQGE 82
Query: 336 CTDFYAVCDKV-GDGVYTVAYYGENKFRLLEVNYSDYVILHLVNV-NGDKTFQLMEFYGR 509
C VC+K +G Y++ Y G+N + E +Y ++ HL N NG +T L +
Sbjct: 83 CVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFITFHLQNFRNGTETHTLALY--- 139
Query: 510 KPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRCF 617
E C++YG+ +NIIDLT D C+
Sbjct: 140 -------------ETCEKYGLGSQNIIDLTNKDPCY 162
>ref|NP_976222.1| lipocalin-15 precursor [Homo sapiens].
Length = 184
Score = 56.6 bits (135), Expect = 3e-08
Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Frame = +3
Query: 168 NFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNSSLAFKFQRKVNGECTDF 347
+F+A K +G WY + +ASD + + + + + IR + L + C
Sbjct: 27 DFNAEKFSGLWYVVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHMEFPGADGCNQV 86
Query: 348 YAVCDKVG-DGVYTVAYYGENKFRLLEVNYSDYVILHLVNVNGDKTFQLMEFYGRKPDVE 524
A KVG +G + V G R+++ +YS + +L++ +++ Y R DV
Sbjct: 87 DAEYLKVGSEGHFRVPALGYLDVRIVDTDYSSFAVLYIYKELEGALSTMVQLYSRTQDVS 146
Query: 525 PKLKDKFVEICQQYGIIKENIIDLTKIDRC 614
P+ F + G+ K+ ++ L + D C
Sbjct: 147 PQALKSFQDFYPTLGLPKDMMVMLPQSDAC 176
>ref|NP_000945.3| prostaglandin-H2 D-isomerase [Homo sapiens].
Length = 190
Score = 51.2 bits (121), Expect = 1e-06
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
Frame = +3
Query: 159 VTSNFDASKIAGEWYSILLASDAKENIEENGSMRVFVEHIRVLDNS--SLAFKFQRKVNG 332
V NF K G W+S LAS++ E+ ++ + + + +L F RK
Sbjct: 30 VQPNFQQDKFLGRWFSAGLASNSSWLREKKAALSMCKSVVAPATDGGLNLTSTFLRKNQC 89
Query: 333 EC-TDFYAVCDKVGDGVYTVAYYGEN-KFRLLEVNYSDYVILHLVNVNGD-KTFQLMEFY 503
E T +G Y ++G ++E +Y Y +L+ G + F++ Y
Sbjct: 90 ETRTMLLQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQYALLYSQGSKGPGEDFRMATLY 149
Query: 504 GRKPDVEPKLKDKFVEICQQYGIIKENIIDLTKIDRC 614
R +LK+KF C+ G ++ I+ L + D+C
Sbjct: 150 SRTQTPRAELKEKFTAFCKAQGFTEDTIVFLPQTDKC 186
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,653,266
Number of extensions: 950577
Number of successful extensions: 2659
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2653
Number of HSP's successfully gapped: 3
Length of query: 288
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 186
Effective length of database: 14,934,836
Effective search space: 2777879496
Effective search space used: 2777879496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008010
(866 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 428 e-117
>Sscrofa_Chr01
|| Length = 315321322
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 651 agtgctgagtgaaggcctcctcatgtgggctccaggatcttctcctccttggtcccccca 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284447396 agtgctgagtgaaggcctcctcatgtgggctccaggatcttctcctccttggtcccccca 284447337
Query: 711 tcatctggtgacaagtcctgtgatccagtttccatcccgagcccacagaaagcctgaaag 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284447336 tcatctggtgacaagtcctgtgatccagtttccatcccgagcccacagaaagcctgaaag 284447277
Query: 771 gcattatctctgcctcttcaggatcttccctaattatctaggaagattcatcagctcacc 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284447276 gcattatctctgcctcttcaggatcttccctaattatctaggaagattcatcagctcacc 284447217
Query: 831 aagaatcaaaagtgttctccaaattcctgactccct 866
||||||||||||||||||||||||||||||||||||
Sbjct: 284447216 aagaatcaaaagtgttctccaaattcctgactccct 284447181
Score = 357 bits (180), Expect = 6e-96
Identities = 183/184 (99%)
Strand = Plus / Minus
Query: 2 acagaggcactggggagtgaagccaccagaggggagagattcagtcccagtgactacaga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284451956 acagaggcactggggagtgaagccaccagaggggagagattcagtcccagtgactacaga 284451897
Query: 62 ggagacagtgctgtccgctgccaagatgaagctgctgctcttgctgtgtctggggctgac 121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 284451896 ggagacagtgctgtccgctgccaagatgaagctgctgttcttgctgtgtctggggctgac 284451837
Query: 122 tctagcctcttcccacaaggaagcaggccaagatgttgtgacaagcaacttcgatgcttc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284451836 tctagcctcttcccacaaggaagcaggccaagatgttgtgacaagcaacttcgatgcttc 284451777
Query: 182 aaag 185
||||
Sbjct: 284451776 aaag 284451773
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 184 agattgccggcgagtggtattccattcttttggcctcagacgccaaggaaaatatagaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284451437 agattgccggcgagtggtattccattcttttggcctcagacgccaaggaaaatatagaag 284451378
Query: 244 aaaatggtagcatgagagtttttgtggagcatatccgtgtcttggacaactcttccctag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284451377 aaaatggtagcatgagagtttttgtggagcatatccgtgtcttggacaactcttccctag 284451318
Query: 304 cctttaaatttcagagaaag 323
||||||||||||||||||||
Sbjct: 284451317 cctttaaatttcagagaaag 284451298
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 394 actatggagagaacaaatttcgcctacttgaagtgaactattctgactatgtcattttac 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284449419 actatggagagaacaaatttcgcctacttgaagtgaactattctgactatgtcattttac 284449360
Query: 454 accttgtgaatgtcaatggcgacaaaacattccagctgatggagttcta 502
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284449359 accttgtgaatgtcaatggcgacaaaacattccagctgatggagttcta 284449311
Score = 204 bits (103), Expect = 6e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 504 ggccgaaaaccagatgtggagccaaaactcaaggacaagtttgtggagatttgccaacaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284448941 ggccgaaaaccagatgtggagccaaaactcaaggacaagtttgtggagatttgccaacaa 284448882
Query: 564 tatggcatcatcaaggaaaacataatcgatctgaccaaaattg 606
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284448881 tatggcatcatcaaggaaaacataatcgatctgaccaaaattg 284448839
Score = 141 bits (71), Expect = 7e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 323 ggtaaacggagagtgtactgacttttatgcggtttgtgacaaagtaggagatggtgtgta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284450572 ggtaaacggagagtgtactgacttttatgcggtttgtgacaaagtaggagatggtgtgta 284450513
Query: 383 tacagttgcct 393
|||||||||||
Sbjct: 284450512 tacagttgcct 284450502
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 606 gatcgctgcttccaactccgagggagtggaggagtccaggagtccag 652
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284448630 gatcgctgcttccaactccgagggagtggaggagtccaggagtccag 284448584
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,448,084
Number of extensions: 171
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 7
Length of query: 866
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 845
Effective length of database: 2,808,413,156
Effective search space: 2373109116820
Effective search space used: 2373109116820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)