Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008012
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192738.1| NF-kappa-B-activating protein [Bos taurus]. 140 2e-33
Alignment gi|XP_002699518.1| PREDICTED: NFKB activating protein [Bos taur... 140 2e-33
Alignment gi|NP_001095968.1| NFKB activating protein-like [Bos taurus]. 98 1e-20
>ref|NP_001192738.1| NF-kappa-B-activating protein [Bos taurus].
Length = 415
Score = 140 bits (352), Expect = 2e-33
Identities = 85/171 (49%), Positives = 85/171 (49%), Gaps = 1/171 (0%)
Frame = +2
Query: 152 MAPVSGSRSPEWEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRNGLSHQ 331
MAPVSGSRSPEWEA DRNGLSHQ
Sbjct: 1 MAPVSGSRSPEWEASSSGGKRRSSSKSPKPSKSSRSPRGRRSRSRSCSRSG-DRNGLSHQ 59
Query: 332 SSGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DKPWPSLLD 508
SGP DKPWPSLLD
Sbjct: 60 LSGPSQGSRNQSYRSRSRSRSRERPSAPRGAPFASASSSAYYGGYSRPYGSDKPWPSLLD 119
Query: 509 KEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 661
KEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK
Sbjct: 120 KEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 170
>ref|XP_002699518.1| PREDICTED: NFKB activating protein [Bos taurus].
Length = 417
Score = 140 bits (352), Expect = 2e-33
Identities = 85/171 (49%), Positives = 85/171 (49%), Gaps = 1/171 (0%)
Frame = +2
Query: 152 MAPVSGSRSPEWEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRNGLSHQ 331
MAPVSGSRSPEWEA DRNGLSHQ
Sbjct: 1 MAPVSGSRSPEWEASSSGGKRRSSSKSPKPSKSSRSPRGRRSRSRSCSRSG-DRNGLSHQ 59
Query: 332 SSGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DKPWPSLLD 508
SGP DKPWPSLLD
Sbjct: 60 LSGPSQGSRNQSYRSRSRSRSRERPSAPRGAPFASASSSAYYGGYSRPYGSDKPWPSLLD 119
Query: 509 KEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 661
KEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK
Sbjct: 120 KEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 170
>ref|NP_001095968.1| NFKB activating protein-like [Bos taurus].
Length = 273
Score = 97.8 bits (242), Expect = 1e-20
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2
Query: 482 DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPK 658
++ W +KE+EES RQ+RL ERERIGELGAPEVWGLSPK PEPDSDEHTPVEDEE K
Sbjct: 101 NRQWAEDCEKEKEESYRQRRLKERERIGELGAPEVWGLSPKFPEPDSDEHTPVEDEEVK 159
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 23,842,303
Number of extensions: 636877
Number of successful extensions: 2936
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2928
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008012
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_549220.2| PREDICTED: similar to nuclear NF-kappaB activat... 90 1e-26
>ref|XP_549220.2| PREDICTED: similar to nuclear NF-kappaB activating protein [Canis
familiaris].
Length = 345
Score = 89.7 bits (221), Expect(2) = 1e-26
Identities = 43/61 (70%), Positives = 44/61 (72%)
Frame = +2
Query: 539 RLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKXXXXXXXXXXXXXXXXXSG 718
RLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVED+EPKK SG
Sbjct: 61 RLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDDEPKKSSTSASTSEEEKKKKKKSG 120
Query: 719 H 721
H
Sbjct: 121 H 121
Score = 49.3 bits (116), Expect(2) = 1e-26
Identities = 32/54 (59%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 315 MALAISRVAPAKAPETSPTDPVLGHALESGPRLRG-APLSLLPRPPIMAATHAP 473
M AIS VA AK PETSPTDP A SGP RG P L PR IMAAT P
Sbjct: 1 MVSAISWVASAKGPETSPTDPAPDPAPGSGPLRRGVTPSFLPPRLRIMAATTRP 54
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 24,424,821
Number of extensions: 552097
Number of successful extensions: 2888
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2882
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008012
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135384.1| PREDICTED: NF-kappa-B-activating protein-lik... 151 5e-37
Alignment gi|XP_001929056.1| PREDICTED: NKAP-like protein-like [Sus scrof... 97 1e-20
>ref|XP_003135384.1| PREDICTED: NF-kappa-B-activating protein-like [Sus scrofa].
Length = 417
Score = 151 bits (382), Expect = 5e-37
Identities = 89/190 (46%), Positives = 89/190 (46%)
Frame = +2
Query: 152 MAPVSGSRSPEWEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRNGLSHQ 331
MAPVSGSRSPEWEA DRNGLSHQ
Sbjct: 1 MAPVSGSRSPEWEASGSGGKRRSSSKSPKPCSKSSRSPRGRRSRSHSCSRSGDRNGLSHQ 60
Query: 332 SSGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKPWPSLLDK 511
SSGP DKPWPSLLDK
Sbjct: 61 SSGPSQGSRNQSYRSRSRSRSRERPSAPRGAPFASASSAYYGGYSRPYGSDKPWPSLLDK 120
Query: 512 EREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKXXXXXXXXXX 691
EREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK
Sbjct: 121 EREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKKSTTSASTSEE 180
Query: 692 XXXXXXXSGH 721
SGH
Sbjct: 181 EKKRKKKSGH 190
>ref|XP_001929056.1| PREDICTED: NKAP-like protein-like [Sus scrofa].
Length = 405
Score = 97.4 bits (241), Expect = 1e-20
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +2
Query: 482 DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPK 658
D+ W +KE+EE+ RQ+RL ERERIGELGAPEVWGLSPK PEPDSDEHTPVED+E K
Sbjct: 103 DRQWAEDYEKEKEENYRQRRLKERERIGELGAPEVWGLSPKLPEPDSDEHTPVEDDEVK 161
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,467,915
Number of extensions: 576368
Number of successful extensions: 1916
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1912
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008012
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080213.3| NF-kappa-B-activating protein [Mus musculus]. 129 3e-30
Alignment gi|NP_079995.2| NFKB activating protein-like [Mus musculus]. 94 2e-19
>ref|NP_080213.3| NF-kappa-B-activating protein [Mus musculus].
Length = 415
Score = 129 bits (325), Expect = 3e-30
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +2
Query: 482 DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 661
DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK
Sbjct: 109 DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 168
>ref|NP_079995.2| NFKB activating protein-like [Mus musculus].
Length = 395
Score = 93.6 bits (231), Expect = 2e-19
Identities = 43/56 (76%), Positives = 46/56 (82%)
Frame = +2
Query: 482 DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDE 649
D W +KE+EES RQ+RL ERERIGELGAPEVWGLSPK PEPDSDEHTP EDE
Sbjct: 103 DPSWAEDQEKEKEESYRQRRLKERERIGELGAPEVWGLSPKIPEPDSDEHTPAEDE 158
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,010,622
Number of extensions: 431053
Number of successful extensions: 2241
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2237
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008012
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078804.2| NF-kappa-B-activating protein [Homo sapiens]. 129 3e-30
Alignment gi|NP_001007532.1| NKAP-like protein [Homo sapiens]. 84 2e-16
>ref|NP_078804.2| NF-kappa-B-activating protein [Homo sapiens].
Length = 415
Score = 129 bits (325), Expect = 3e-30
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +2
Query: 482 DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 661
DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK
Sbjct: 111 DKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEEPKK 170
>ref|NP_001007532.1| NKAP-like protein [Homo sapiens].
Length = 402
Score = 84.3 bits (207), Expect = 2e-16
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +2
Query: 506 DKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDEHTPVEDEE 652
D E+EES RQ+RL ERERIGELGAPEVWG SPK P+ DSDEHTPVEDEE
Sbjct: 110 DYEKEESHRQRRLKERERIGELGAPEVWGPSPKFPQLDSDEHTPVEDEE 158
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 23,812,226
Number of extensions: 521309
Number of successful extensions: 2943
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2938
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008012
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 1005 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 1005 bits (507), Expect = 0.0
Identities = 507/507 (100%)
Strand = Plus / Plus
Query: 3 tttgccgacgtacccggaactgtttccaaggtttcctcaggttcgggtggtggcgcggcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335147 tttgccgacgtacccggaactgtttccaaggtttcctcaggttcgggtggtggcgcggcc 113335206
Query: 63 gcgggtcctgggagccaaggcaaccaagatcttccccggctcgcgagagcgcccccttct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335207 gcgggtcctgggagccaaggcaaccaagatcttccccggctcgcgagagcgcccccttct 113335266
Query: 123 cccacggcttcggggaaccagtggcagcgatggctccggtgtctggctcccgcagcccag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335267 cccacggcttcggggaaccagtggcagcgatggctccggtgtctggctcccgcagcccag 113335326
Query: 183 agtgggaggcctcaggttccggggggaagcgtcgcagttcgtcgaagagccctaagcctt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335327 agtgggaggcctcaggttccggggggaagcgtcgcagttcgtcgaagagccctaagcctt 113335386
Query: 243 gcagcaaatcctctcgctccccgcggggccgccgctctcgctcgcactcttgctctcggt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335387 gcagcaaatcctctcgctccccgcggggccgccgctctcgctcgcactcttgctctcggt 113335446
Query: 303 ccggggaccggaatggccttagccatcagtcgagtggccccagccaaggctccagaaacc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335447 ccggggaccggaatggccttagccatcagtcgagtggccccagccaaggctccagaaacc 113335506
Query: 363 agtcctacagatcccgttctcggtcacgctctcgagagcggccctcggctccgcggggcg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335507 agtcctacagatcccgttctcggtcacgctctcgagagcggccctcggctccgcggggcg 113335566
Query: 423 cccctttcgcttctgcctcgtccgcctattatggcggctactcacgcccctacggcagtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113335567 cccctttcgcttctgcctcgtccgcctattatggcggctactcacgcccctacggcagtg 113335626
Query: 483 acaagccatggcctagcctcctggaca 509
|||||||||||||||||||||||||||
Sbjct: 113335627 acaagccatggcctagcctcctggaca 113335653
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 619 ctctgatgaacatacaccagtagaggatgaagagccaaagaaaagcaccacttcagcttc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113343809 ctctgatgaacatacaccagtagaggatgaagagccaaagaaaagcaccacttcagcttc 113343868
Query: 679 tacttc 684
||||||
Sbjct: 113343869 tacttc 113343874
Score = 105 bits (53), Expect = 5e-20
Identities = 67/69 (97%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 937 ttccagcgattcaagttctaaagagtcccaggaagagttgctggagaaatccctggaa-g 995
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 113348547 ttccagcgattcaagttctaaagagtcccaggaagagttgctggag-aatccctggaagg 113348605
Query: 996 atcgatcaa 1004
|||||||||
Sbjct: 113348606 atcgatcaa 113348614
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 782 tattctgacgatagtgacagtgactctgattctgatacagactccagtg 830
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113344162 tattctgacgatagtgacagtgactctgattctgatacagactccagtg 113344210
Score = 93.7 bits (47), Expect = 2e-16
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 620 tctgatgaacatacaccagtagaggatgaagagccaaagaaaagcaccacttcagcttct 679
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 113111439 tctgatgaacatatacca-tagaggatgaagagccaaagaaaagcaccacttcagctgct 113111497
Query: 680 act 682
|||
Sbjct: 113111498 act 113111500
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 576 ctcctgaagtatggggactttctccaaagaatccagaaccaga 618
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113339332 ctcctgaagtatggggactttctccaaagaatccagaaccaga 113339374
Score = 65.9 bits (33), Expect = 4e-08
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 262 cccgcggggccgccgctctcgctcgcactcttgctctcggtccggggac 310
||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct: 113106088 cccgcggggccgccgttctcgctctcattcttgctctcggcccggggac 113106136
Score = 63.9 bits (32), Expect = 2e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 264 cgcggggccgccgctctcgctcgcactcttgctctcggtccggggacc 311
|||||||||||||||||| |||||| |||||||||||| ||| |||||
Sbjct: 113177946 cgcggggccgccgctctccctcgcattcttgctctcggcccgaggacc 113177899
Score = 63.9 bits (32), Expect = 2e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 264 cgcggggccgccgctctcgctcgcactcttgctctcggtccggggacc 311
|||||||||||||||||| |||||| |||||||||||| ||| |||||
Sbjct: 113286745 cgcggggccgccgctctccctcgcattcttgctctcggcccgaggacc 113286698
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,658,479
Number of extensions: 105
Number of successful extensions: 105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 9
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)