Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008015
(1899 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030189.1| D-3-phosphoglycerate dehydrogenase [Bos taur... 899 0.0
Alignment gi|NP_001178966.1| glyoxylate reductase/hydroxypyruvate reducta... 115 1e-25
Alignment gi|XP_002689764.1| PREDICTED: glyoxylate reductase/hydroxypyruv... 115 1e-25
Alignment gi|NP_783643.1| C-terminal-binding protein 2 [Bos taurus]. 115 2e-25
Alignment gi|XP_002693961.1| PREDICTED: glyoxylate reductase/hydroxypyruv... 115 2e-25
Alignment gi|XP_002688496.1| PREDICTED: C-terminal binding protein 1 [Bos... 114 3e-25
Alignment gi|XP_590771.5| PREDICTED: C-terminal binding protein 1 [Bos ta... 114 3e-25
Alignment gi|NP_001069187.2| hypothetical protein LOC515578 [Bos taurus]. 108 1e-23
>ref|NP_001030189.1| D-3-phosphoglycerate dehydrogenase [Bos taurus].
Length = 533
Score = 899 bits (2323), Expect = 0.0
Identities = 457/533 (85%), Positives = 482/533 (90%)
Frame = +1
Query: 142 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 321
MAFANLRKVLISDSLDPCCR+ILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT
Sbjct: 1 MAFANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 60
Query: 322 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 501
SD+INAA+KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMI+CLARQ
Sbjct: 61 SDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQ 120
Query: 502 IPQATASMKDGKWERKKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAP 681
IPQA ASMKDGKWERKKFMGTELNGKV EVATRMQSFGMKTIGYDPII+P
Sbjct: 121 IPQAAASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 180
Query: 682 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 861
EVSASFGVQQLPLE+IWPLCDFITVHTPLLPSTTGLLNDSTFA CKKGV VVNCARGGIV
Sbjct: 181 EVSASFGVQQLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIV 240
Query: 862 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 1041
DEGALLRALQSGQCAGAALDVFTEEPPRDRALV+HE VISCPHLGAST+EAQSRCGEEIA
Sbjct: 241 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVNHENVISCPHLGASTKEAQSRCGEEIA 300
Query: 1042 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 1221
+QFVDMVKG++LAGVVNAQAL S F PHTKPW+ LA+ALGALMQAWAGSPKG IQVVTQG
Sbjct: 301 LQFVDMVKGKALAGVVNAQALASIFCPHTKPWVSLAKALGALMQAWAGSPKGAIQVVTQG 360
Query: 1222 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAE 1401
+SLKNSG+CL+PAVI+GLLK+AS +++VNLVNA LL KEAGL VTTSHNPA P E+ E
Sbjct: 361 SSLKNSGSCLAPAVIIGLLKDASQQSNVNLVNAMLLVKEAGLDVTTSHNPATPREQDFGE 420
Query: 1402 CLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPT 1581
CLLTVALAGAPYQAVGLVQGT P+L ALNGAVF FRAQ SNP MLPT
Sbjct: 421 CLLTVALAGAPYQAVGLVQGTKPVLQALNGAVFRPEVPLHPGQPLLMFRAQASNPAMLPT 480
Query: 1582 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MIGLLAEA VQLLSYQ+SVVSDGETWHVM+ISSLLPSL PWK HVTEAFQF F
Sbjct: 481 MIGLLAEAGVQLLSYQSSVVSDGETWHVMSISSLLPSLAPWKPHVTEAFQFCF 533
>ref|NP_001178966.1| glyoxylate reductase/hydroxypyruvate reductase [Bos taurus].
Length = 328
Score = 115 bits (288), Expect = 1e-25
Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 8/266 (3%)
Frame = +1
Query: 247 LSKEELIAELQDCEGLIVRSATKVTSDVINAA-KKLQVVGRAGTGVDNVDLEAATRKGIL 423
+ +E+L + +GL+ + ++ +++AA L+V+ GVD++ L+ ++GI
Sbjct: 40 IPREDLEQRMAGAQGLLCLLSDRIDKKLLDAAGANLKVISTMSVGVDHLALDEIKKRGIR 99
Query: 424 VMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKK---FMGTELNGKVXXXX 594
V TP + + AEL ++L R++P+A +K+G W K G L+
Sbjct: 100 VGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGHGLSQSTVGIV 159
Query: 595 XXXXXXXEVATRMQSFGMKTI---GYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTP 765
+A R++ FG++ G P P+ +A F + + ++ DFI V
Sbjct: 160 GLGRIGQAIARRLKPFGVRRFLYTGRQP--RPQEAAEFQAEFVSTPKLAAESDFIVVACS 217
Query: 766 LLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-P 942
L P+T GL N F KK VN +RG +VD+ L +AL SGQ A A LDV T EP P
Sbjct: 218 LTPATRGLCNKDFFQWMKKTAVFVNISRGEVVDQDDLYQALASGQIAAAGLDVTTPEPLP 277
Query: 943 RDRALVDHEKVISCPHLGASTREAQS 1020
+ L+ + + PH+G++T ++
Sbjct: 278 TNHPLLTLKNCVILPHIGSATHRTRN 303
>ref|XP_002689764.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Bos
taurus].
Length = 328
Score = 115 bits (288), Expect = 1e-25
Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 8/266 (3%)
Frame = +1
Query: 247 LSKEELIAELQDCEGLIVRSATKVTSDVINAA-KKLQVVGRAGTGVDNVDLEAATRKGIL 423
+ +E+L + +GL+ + ++ +++AA L+V+ GVD++ L+ ++GI
Sbjct: 40 IPREDLEQRMAGAQGLLCLLSDRIDKKLLDAAGANLKVISTMSVGVDHLALDEIKKRGIR 99
Query: 424 VMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKK---FMGTELNGKVXXXX 594
V TP + + AEL ++L R++P+A +K+G W K G L+
Sbjct: 100 VGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGHGLSQSTVGIV 159
Query: 595 XXXXXXXEVATRMQSFGMKTI---GYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTP 765
+A R++ FG++ G P P+ +A F + + ++ DFI V
Sbjct: 160 GLGRIGQAIARRLKPFGVRRFLYTGRQP--RPQEAAEFQAEFVSTPKLAAESDFIVVACS 217
Query: 766 LLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-P 942
L P+T GL N F KK VN +RG +VD+ L +AL SGQ A A LDV T EP P
Sbjct: 218 LTPATRGLCNKDFFQWMKKTAVFVNISRGEVVDQDDLYQALASGQIAAAGLDVTTPEPLP 277
Query: 943 RDRALVDHEKVISCPHLGASTREAQS 1020
+ L+ + + PH+G++T ++
Sbjct: 278 TNHPLLTLKNCVILPHIGSATHRTRN 303
>ref|NP_783643.1| C-terminal-binding protein 2 [Bos taurus].
Length = 982
Score = 115 bits (287), Expect = 2e-25
Identities = 91/301 (30%), Positives = 139/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 610 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 669
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 670 ETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 729
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG + YDP + S GVQ++ L+++ D +++H L L
Sbjct: 730 QAVAVRAKAFGFSVLFYDPYLQDGTERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 789
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 790 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 849
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFSPHTKP 1134
+I PH + +A E A + + GR SL VN + F T P
Sbjct: 850 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTTAP 904
Query: 1135 W 1137
W
Sbjct: 905 W 905
>ref|XP_002693961.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Bos
taurus].
Length = 398
Score = 115 bits (287), Expect = 2e-25
Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 8/266 (3%)
Frame = +1
Query: 247 LSKEELIAELQDCEGLIVRSATKVTSDVINAA-KKLQVVGRAGTGVDNVDLEAATRKGIL 423
+ +E+L + +GL+ + ++ +++AA L+V+ GVD++ L+ ++GI
Sbjct: 110 IPREDLEQRMAGAQGLLCLLSDRIDKKLLDAAGANLKVISTMSVGVDHLALDEIKKRGIR 169
Query: 424 VMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKK---FMGTELNGKVXXXX 594
V TP + + AEL ++L + R++P+A +K+G W K G L+
Sbjct: 170 VGYTPGVLTDATAELAVSLLLTICRRLPEAIEEVKNGGWTSWKPLWMCGHGLSQSTVGIV 229
Query: 595 XXXXXXXEVATRMQSFGMKTI---GYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTP 765
+A R++ FG++ G P + +A F + + E+ DFI V
Sbjct: 230 GLGRIGQAIARRLKPFGVRRFLYTGRQP--RSQEAAEFQAEFVSTPELAAESDFIVVACS 287
Query: 766 LLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-P 942
L P+T GL N F KK VN +RG +VD+ L +AL SGQ A A LDV T EP P
Sbjct: 288 LTPATRGLCNKDFFQWMKKTAVFVNISRGEVVDQDDLYQALASGQIAAAGLDVTTPEPLP 347
Query: 943 RDRALVDHEKVISCPHLGASTREAQS 1020
+ L+ + + PH+G++T ++
Sbjct: 348 TNHPLLTLKNCVILPHIGSATHRTRN 373
>ref|XP_002688496.1| PREDICTED: C-terminal binding protein 1 [Bos taurus].
Length = 560
Score = 114 bits (285), Expect = 3e-25
Identities = 87/293 (29%), Positives = 139/293 (47%), Gaps = 13/293 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 56 LNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVE 115
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 116 ETADSTMCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGVIGLGRVG 175
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG + YDP +A + G+Q++ L+++ D +T+H L L
Sbjct: 176 QAVALRAKAFGFNVLFYDPYLADGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSA 1113
+I PH + +A EE A + + GR SL VN L +A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLAAA 348
>ref|XP_590771.5| PREDICTED: C-terminal binding protein 1 [Bos taurus].
Length = 476
Score = 114 bits (285), Expect = 3e-25
Identities = 87/293 (29%), Positives = 139/293 (47%), Gaps = 13/293 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 56 LNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVE 115
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 116 ETADSTMCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGVIGLGRVG 175
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG + YDP +A + G+Q++ L+++ D +T+H L L
Sbjct: 176 QAVALRAKAFGFNVLFYDPYLADGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSA 1113
+I PH + +A EE A + + GR SL VN L +A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLAAA 348
>ref|NP_001069187.2| hypothetical protein LOC515578 [Bos taurus].
Length = 328
Score = 108 bits (271), Expect = 1e-23
Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 5/256 (1%)
Frame = +1
Query: 316 VTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLA 495
V+ +++++ L++V AG G+D++DL G+ V NTP+ S A+L ++L A
Sbjct: 63 VSQELLHSLPSLKIVASAGAGLDHLDLGLVASFGVKVANTPHAVSSPTADLGMALLLAAA 122
Query: 496 RQIPQATASMKDGKWER--KKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDP 669
R++ + E +MG ++ G ++A R ++F MK + ++
Sbjct: 123 RRVVEGHQLAVSPHTENFPTDYMGQQVTGATLGIIGMGSIGYKIAQRARAFEMKIVYHNR 182
Query: 670 IIAP--EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNC 843
E A + L+++ DF+ + L P T GL+ L K ++N
Sbjct: 183 KRRKLEEEEAVGAIYCERLDDLLQWSDFVMLAVSLTPQTQGLIGKRELRLMKPTAILINI 242
Query: 844 ARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEKVISCPHLGASTREAQS 1020
RG +VD+ AL+ ALQ+G AALDV EP PRD L++ + VI PH+G++T +A+
Sbjct: 243 GRGLLVDQEALVEALQTGLIKAAALDVTYPEPLPRDHPLLELKNVILTPHIGSATHQARR 302
Query: 1021 RCGEEIAIQFVDMVKG 1068
+ E + + + G
Sbjct: 303 QMMENLVESILASLSG 318
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 82,621,167
Number of extensions: 2641883
Number of successful extensions: 12870
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 12734
Number of HSP's successfully gapped: 8
Length of query: 633
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 525
Effective length of database: 14,107,870
Effective search space: 7406631750
Effective search space used: 7406631750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008015
(1899 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850035.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 916 0.0
Alignment gi|XP_849919.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 916 0.0
Alignment gi|XP_849835.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 916 0.0
Alignment gi|XP_849042.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 476 e-134
Alignment gi|XP_533024.2| PREDICTED: similar to D-3-phosphoglycerate dehy... 341 2e-93
Alignment gi|XP_852864.1| PREDICTED: similar to D-3-phosphoglycerate dehy... 257 3e-68
Alignment gi|XP_855070.1| PREDICTED: similar to C-terminal binding protei... 115 2e-25
Alignment gi|XP_854862.1| PREDICTED: similar to Glyoxylate reductase/hydr... 107 3e-23
>ref|XP_850035.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 533
Score = 916 bits (2367), Expect = 0.0
Identities = 465/533 (87%), Positives = 486/533 (91%)
Frame = +1
Query: 142 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 321
MAFANLRKVLISDSLDPCCR+ILQDGGLQVVEKQNLSKEEL+AEL+DCEGLIVRSATKVT
Sbjct: 1 MAFANLRKVLISDSLDPCCRQILQDGGLQVVEKQNLSKEELMAELRDCEGLIVRSATKVT 60
Query: 322 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 501
+DVINAA+KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMI+CLAR
Sbjct: 61 ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARH 120
Query: 502 IPQATASMKDGKWERKKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAP 681
IPQATASMKDGKWERKKFMGTELNGK+ EVATRMQSFGMKT+GYDPIIAP
Sbjct: 121 IPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQSFGMKTVGYDPIIAP 180
Query: 682 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 861
EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFA CKKGVRVVNCARGGIV
Sbjct: 181 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIV 240
Query: 862 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 1041
DEGALLRAL+SGQCAGAALDVFTEEPPRDRALV+HE+VISCPHLGAST+EAQSRCGEEIA
Sbjct: 241 DEGALLRALRSGQCAGAALDVFTEEPPRDRALVEHERVISCPHLGASTKEAQSRCGEEIA 300
Query: 1042 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 1221
IQFVDMVKG+SLAGVVNAQALTSAFSPHTKPWIGLAEALG LMQAWAGSPKGTIQVVTQG
Sbjct: 301 IQFVDMVKGKSLAGVVNAQALTSAFSPHTKPWIGLAEALGTLMQAWAGSPKGTIQVVTQG 360
Query: 1222 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAE 1401
T LKN+G CLSPAVIVGLLK+ + +ADVNLVNAKLL +EAGL VTTSHNPA PGE+G E
Sbjct: 361 TPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPAVPGEQGCGE 420
Query: 1402 CLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPT 1581
CLLTVALAGAPYQA G VQG+ P+LHALNGAVF RAQPS P MLPT
Sbjct: 421 CLLTVALAGAPYQAAGWVQGSTPVLHALNGAVFRPEVPLRRGLPLLLSRAQPSPPEMLPT 480
Query: 1582 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MIGLLAEA VQLLSYQTSVVSDGETWHVM ISSLLPSLE WKQHVTEAFQF F
Sbjct: 481 MIGLLAEAGVQLLSYQTSVVSDGETWHVMGISSLLPSLEAWKQHVTEAFQFLF 533
>ref|XP_849919.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 533
Score = 916 bits (2367), Expect = 0.0
Identities = 465/533 (87%), Positives = 486/533 (91%)
Frame = +1
Query: 142 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 321
MAFANLRKVLISDSLDPCCR+ILQDGGLQVVEKQNLSKEEL+AEL+DCEGLIVRSATKVT
Sbjct: 1 MAFANLRKVLISDSLDPCCRQILQDGGLQVVEKQNLSKEELMAELRDCEGLIVRSATKVT 60
Query: 322 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 501
+DVINAA+KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMI+CLAR
Sbjct: 61 ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARH 120
Query: 502 IPQATASMKDGKWERKKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAP 681
IPQATASMKDGKWERKKFMGTELNGK+ EVATRMQSFGMKT+GYDPIIAP
Sbjct: 121 IPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQSFGMKTVGYDPIIAP 180
Query: 682 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 861
EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFA CKKGVRVVNCARGGIV
Sbjct: 181 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIV 240
Query: 862 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 1041
DEGALLRAL+SGQCAGAALDVFTEEPPRDRALV+HE+VISCPHLGAST+EAQSRCGEEIA
Sbjct: 241 DEGALLRALRSGQCAGAALDVFTEEPPRDRALVEHERVISCPHLGASTKEAQSRCGEEIA 300
Query: 1042 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 1221
IQFVDMVKG+SLAGVVNAQALTSAFSPHTKPWIGLAEALG LMQAWAGSPKGTIQVVTQG
Sbjct: 301 IQFVDMVKGKSLAGVVNAQALTSAFSPHTKPWIGLAEALGTLMQAWAGSPKGTIQVVTQG 360
Query: 1222 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAE 1401
T LKN+G CLSPAVIVGLLK+ + +ADVNLVNAKLL +EAGL VTTSHNPA PGE+G E
Sbjct: 361 TPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPAVPGEQGCGE 420
Query: 1402 CLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPT 1581
CLLTVALAGAPYQA G VQG+ P+LHALNGAVF RAQPS P MLPT
Sbjct: 421 CLLTVALAGAPYQAAGWVQGSTPVLHALNGAVFRPEVPLRRGLPLLLSRAQPSPPEMLPT 480
Query: 1582 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MIGLLAEA VQLLSYQTSVVSDGETWHVM ISSLLPSLE WKQHVTEAFQF F
Sbjct: 481 MIGLLAEAGVQLLSYQTSVVSDGETWHVMGISSLLPSLEAWKQHVTEAFQFLF 533
>ref|XP_849835.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 533
Score = 916 bits (2367), Expect = 0.0
Identities = 465/533 (87%), Positives = 486/533 (91%)
Frame = +1
Query: 142 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 321
MAFANLRKVLISDSLDPCCR+ILQDGGLQVVEKQNLSKEEL+AEL+DCEGLIVRSATKVT
Sbjct: 1 MAFANLRKVLISDSLDPCCRQILQDGGLQVVEKQNLSKEELMAELRDCEGLIVRSATKVT 60
Query: 322 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 501
+DVINAA+KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMI+CLAR
Sbjct: 61 ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARH 120
Query: 502 IPQATASMKDGKWERKKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAP 681
IPQATASMKDGKWERKKFMGTELNGK+ EVATRMQSFGMKT+GYDPIIAP
Sbjct: 121 IPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQSFGMKTVGYDPIIAP 180
Query: 682 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 861
EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFA CKKGVRVVNCARGGIV
Sbjct: 181 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIV 240
Query: 862 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 1041
DEGALLRAL+SGQCAGAALDVFTEEPPRDRALV+HE+VISCPHLGAST+EAQSRCGEEIA
Sbjct: 241 DEGALLRALRSGQCAGAALDVFTEEPPRDRALVEHERVISCPHLGASTKEAQSRCGEEIA 300
Query: 1042 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 1221
IQFVDMVKG+SLAGVVNAQALTSAFSPHTKPWIGLAEALG LMQAWAGSPKGTIQVVTQG
Sbjct: 301 IQFVDMVKGKSLAGVVNAQALTSAFSPHTKPWIGLAEALGTLMQAWAGSPKGTIQVVTQG 360
Query: 1222 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAE 1401
T LKN+G CLSPAVIVGLLK+ + +ADVNLVNAKLL +EAGL VTTSHNPA PGE+G E
Sbjct: 361 TPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPAVPGEQGCGE 420
Query: 1402 CLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPT 1581
CLLTVALAGAPYQA G VQG+ P+LHALNGAVF RAQPS P MLPT
Sbjct: 421 CLLTVALAGAPYQAAGWVQGSTPVLHALNGAVFRPEVPLRRGLPLLLSRAQPSPPEMLPT 480
Query: 1582 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MIGLLAEA VQLLSYQTSVVSDGETWHVM ISSLLPSLE WKQHVTEAFQF F
Sbjct: 481 MIGLLAEAGVQLLSYQTSVVSDGETWHVMGISSLLPSLEAWKQHVTEAFQFLF 533
>ref|XP_849042.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 411
Score = 476 bits (1224), Expect = e-134
Identities = 243/293 (82%), Positives = 259/293 (88%)
Frame = +1
Query: 208 LQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDN 387
L G + V K +E L+ QDCEGLIVRSATKVT+DVINAA+KLQVVGRAGTGVDN
Sbjct: 6 LWQNGCKAVLKTGCGQECLLP--QDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDN 63
Query: 388 VDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKFMGTE 567
VDLEAATRKGILVMNTPNGNSLSAAELTCGMI+CLAR IPQATASMKDGKWERKKFMGTE
Sbjct: 64 VDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARHIPQATASMKDGKWERKKFMGTE 123
Query: 568 LNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLPLEEIWPLCDF 747
LNGK+ EVATRMQSFGMKT+GYDPIIAPEVSASFGVQQLPLEEIWPLCDF
Sbjct: 124 LNGKILGILGLGRIGREVATRMQSFGMKTVGYDPIIAPEVSASFGVQQLPLEEIWPLCDF 183
Query: 748 ITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVF 927
ITVHTPLLPSTTGLLNDSTFA CKKGVRVVNCARGGIVDEGALLRAL+SG GA + +
Sbjct: 184 ITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALRSGLSGGAEMCLS 243
Query: 928 TEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGRSLAGV 1086
+EPPRDRALV+HE+VISCPHLGAST+EAQSRCGEEIAIQFVDMVKG+SLAGV
Sbjct: 244 WQEPPRDRALVEHERVISCPHLGASTKEAQSRCGEEIAIQFVDMVKGKSLAGV 296
Score = 112 bits (280), Expect = 1e-24
Identities = 56/62 (90%), Positives = 56/62 (90%)
Frame = +1
Query: 1555 PSNPTMLPTMIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQF 1734
PS P MLPTMIGLLAEA VQLLSYQTSVVSDGETWHVM ISSLLPSLE WKQHVTEAFQF
Sbjct: 350 PSPPEMLPTMIGLLAEAGVQLLSYQTSVVSDGETWHVMGISSLLPSLEAWKQHVTEAFQF 409
Query: 1735 HF 1740
F
Sbjct: 410 LF 411
>ref|XP_533024.2| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH)
[Canis familiaris].
Length = 285
Score = 341 bits (874), Expect = 2e-93
Identities = 178/234 (76%), Positives = 189/234 (80%)
Frame = +1
Query: 1039 AIQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQ 1218
A+ F+ +L VNAQALTSAFSPHTKPWIGLAEALG LMQAWAGSPKGTIQVVTQ
Sbjct: 52 ALAFLRPASWSTLVLSVNAQALTSAFSPHTKPWIGLAEALGTLMQAWAGSPKGTIQVVTQ 111
Query: 1219 GTSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGA 1398
GT LKN+G CLSPAVIVGLLK+ + +ADVNLVNAKLL +EAGL VTTSHNPA PGE+G
Sbjct: 112 GTPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPAVPGEQGCG 171
Query: 1399 ECLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLP 1578
ECLLTVALAGAPYQA G VQG+ P+LHALNGAVF RAQ S P MLP
Sbjct: 172 ECLLTVALAGAPYQAAGWVQGSTPVLHALNGAVFRPEVPLRRGLPLLLSRAQQSPPEMLP 231
Query: 1579 TMIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
TMIGLLAEA VQLLSYQTSVVSDGETWHVM ISSLLPSLE WKQHVTEAFQF F
Sbjct: 232 TMIGLLAEAGVQLLSYQTSVVSDGETWHVMGISSLLPSLEAWKQHVTEAFQFLF 285
>ref|XP_852864.1| PREDICTED: similar to D-3-phosphoglycerate dehydrogenase (3-PGDH),
partial [Canis familiaris].
Length = 178
Score = 257 bits (656), Expect = 3e-68
Identities = 133/177 (75%), Positives = 143/177 (80%)
Frame = +1
Query: 1210 VTQGTSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEK 1389
++ GT LKN+G CLSPAVIVGLLK+ + +ADVNLVNAKLL +EAGL VTTSHNPA PGE+
Sbjct: 2 LSPGTPLKNAGNCLSPAVIVGLLKDTASQADVNLVNAKLLVQEAGLSVTTSHNPAVPGEQ 61
Query: 1390 GGAECLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPT 1569
G ECLLTVALAGAPYQA G VQG+ P+LHALNGAVF RAQPS P
Sbjct: 62 GCGECLLTVALAGAPYQAAGWVQGSTPVLHALNGAVFRPEVPLRRGLPLLLSRAQPSPPE 121
Query: 1570 MLPTMIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MLPTMIGLLAEA VQLLSYQTSVVSDGETWHVM ISSLLPSLE WKQHVTEAFQF F
Sbjct: 122 MLPTMIGLLAEAGVQLLSYQTSVVSDGETWHVMGISSLLPSLEAWKQHVTEAFQFLF 178
>ref|XP_855070.1| PREDICTED: similar to C-terminal binding protein 1 (CtBP1)
(C-terminal binding protein 3) (CtBP3) (50 kDa
BFA-dependent ADP-ribosylation substrate) (BARS-50)
[Canis familiaris].
Length = 369
Score = 115 bits (287), Expect = 2e-25
Identities = 87/293 (29%), Positives = 140/293 (47%), Gaps = 13/293 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 56 LNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVE 115
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 116 ETADSTMCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 175
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG + YDP ++ + G+Q++ L+++ D +T+H L L
Sbjct: 176 QAVALRAKAFGFNVLFYDPYLSDGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSA 1113
+I PH + +A EE A + + GR SL VN LT+A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAA 348
>ref|XP_854862.1| PREDICTED: similar to Glyoxylate reductase/hydroxypyruvate reductase
[Canis familiaris].
Length = 352
Score = 107 bits (268), Expect = 3e-23
Identities = 89/313 (28%), Positives = 144/313 (46%), Gaps = 12/313 (3%)
Frame = +1
Query: 103 APGELQFLRPTPVMAFANLRKVLISDSLDPCCREILQDGGLQVVEK----QNLSKEELIA 270
A +L F PV L KV ++ + P R L VE+ + + +EL
Sbjct: 16 AHSQLNFPSQLPV----RLMKVFVTRRIPPEGRAALARAADCEVEQWDSDEPIPAKELER 71
Query: 271 ELQDCEGLIVRSATKVTSDVINAA-KKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGN 447
+ GL+ + V +++AA L+V+ GVD++ LE ++GI V TP+
Sbjct: 72 GVAGAHGLLCLLSDHVDKRLLDAAGANLKVISTMSVGVDHLALEEIKKRGIRVGYTPDVL 131
Query: 448 SLSAAELTCGMILCLARQIPQATASMKDGKWERKK---FMGTELNGKVXXXXXXXXXXXE 618
+ + AEL ++L R++P+A +++G W K G L
Sbjct: 132 TDATAELAMSLLLTTCRRLPEAIEEVRNGGWTSWKPLWMCGYGLTQSTVGIIGLGRIGQA 191
Query: 619 VATRMQSFGMKTI---GYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGL 789
+A R++ FG++ G P P+ +A F + + ++ DFI V L P+T GL
Sbjct: 192 IARRLKPFGIQRFLYTGRQP--RPQEAAEFQAEFVSTPKLAAESDFIIVACSLTPATKGL 249
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDH 966
N F K +N +RG +V++ L AL SGQ A A LDV T EP P + L+
Sbjct: 250 CNKDFFQQMKTTAVFINISRGDVVNQDDLYEALASGQIAAAGLDVTTPEPLPTNHPLLTL 309
Query: 967 EKVISCPHLGAST 1005
+ + PH+G++T
Sbjct: 310 KNCVILPHIGSAT 322
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 86,110,897
Number of extensions: 2714430
Number of successful extensions: 13573
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 13358
Number of HSP's successfully gapped: 9
Length of query: 633
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 524
Effective length of database: 15,240,880
Effective search space: 7986221120
Effective search space used: 7986221120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008015
(1899 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116634.1| D-3-phosphoglycerate dehydrogenase [Sus scro... 988 0.0
Alignment gi|XP_001926798.3| PREDICTED: d-3-phosphoglycerate dehydrogenas... 469 e-132
Alignment gi|XP_001929103.1| PREDICTED: hypothetical protein LOC100154421... 117 3e-26
Alignment gi|XP_001924750.3| PREDICTED: probable 2-ketogluconate reductas... 102 1e-21
Alignment gi|XP_003353764.1| PREDICTED: probable 2-ketogluconate reductas... 102 1e-21
Alignment gi|XP_001925894.3| PREDICTED: hypothetical protein LOC100154014... 63 6e-10
>ref|NP_001116634.1| D-3-phosphoglycerate dehydrogenase [Sus scrofa].
Length = 533
Score = 988 bits (2555), Expect = 0.0
Identities = 505/533 (94%), Positives = 506/533 (94%)
Frame = +1
Query: 142 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 321
MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT
Sbjct: 1 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 60
Query: 322 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 501
SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ
Sbjct: 61 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 120
Query: 502 IPQATASMKDGKWERKKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAP 681
IPQATASMKDGKWERKKFMGTELNGKV EVATRMQSFGMKTIGYDPIIAP
Sbjct: 121 IPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIIAP 180
Query: 682 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 861
EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV
Sbjct: 181 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 240
Query: 862 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 1041
DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA
Sbjct: 241 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 300
Query: 1042 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 1221
IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG
Sbjct: 301 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 360
Query: 1222 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAE 1401
TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAP E+GGAE
Sbjct: 361 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPEEQGGAE 420
Query: 1402 CLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPT 1581
C LTVALAGAPYQAVGLVQGTAPMLHALNGAVF FRAQPSNPTMLPT
Sbjct: 421 CFLTVALAGAPYQAVGLVQGTAPMLHALNGAVFRPEVPLRRGLPLLLFRAQPSNPTMLPT 480
Query: 1582 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF
Sbjct: 481 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 533
>ref|XP_001926798.3| PREDICTED: d-3-phosphoglycerate dehydrogenase, partial [Sus scrofa].
Length = 301
Score = 469 bits (1206), Expect = e-132
Identities = 240/261 (91%), Positives = 244/261 (93%)
Frame = +1
Query: 931 EEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGRSLAGVVNAQALTS 1110
+EPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGRSLAGVVNAQALTS
Sbjct: 25 QEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGRSLAGVVNAQALTS 84
Query: 1111 AFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQGTSLKNSGTCLSPAVIVGLLKEAS 1290
AFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQGTSLKNSGTCLSPAVIVGLLKEAS
Sbjct: 85 AFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQGTSLKNSGTCLSPAVIVGLLKEAS 144
Query: 1291 HRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAECLLTVALAGAPYQAVGLVQGTAP 1470
HRADVNLVNAKLLEKEAGLHVTTSHNPAAP E+GGAECLLTVALAGAPYQAVGLVQ TAP
Sbjct: 145 HRADVNLVNAKLLEKEAGLHVTTSHNPAAPEEQGGAECLLTVALAGAPYQAVGLVQSTAP 204
Query: 1471 MLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPTMIGLLAEARVQLLSYQTSVVSDG 1650
MLHALNGAVF FRAQPSNPTMLPTMIGLLAEARVQLLSYQTSVVSDG
Sbjct: 205 MLHALNGAVFRPEVPLRRGLPLLLFRAQPSNPTMLPTMIGLLAEARVQLLSYQTSVVSDG 264
Query: 1651 ETWHVMAISSLLPSLEPWKQH 1713
ETWHVMAISSLLPSLEP K++
Sbjct: 265 ETWHVMAISSLLPSLEPSKRN 285
>ref|XP_001929103.1| PREDICTED: hypothetical protein LOC100154421 [Sus scrofa].
Length = 982
Score = 117 bits (292), Expect = 3e-26
Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 610 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 669
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 670 ETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 729
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG I YDP + + S GVQ++ L+++ D +++H L L
Sbjct: 730 QAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 789
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 790 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 849
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFSPHTKP 1134
+I PH + +A E A + + GR SL VN + F T P
Sbjct: 850 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTTAP 904
Query: 1135 W 1137
W
Sbjct: 905 W 905
>ref|XP_001924750.3| PREDICTED: probable 2-ketogluconate reductase-like isoform 1 [Sus
scrofa].
Length = 346
Score = 102 bits (253), Expect = 1e-21
Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 5/256 (1%)
Frame = +1
Query: 316 VTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLA 495
+ +++ + L+V+ +G G+D++DL+ G+ V NTP+ + A+L ++L +A
Sbjct: 81 INQELLQSLPSLRVIASSGVGLDHLDLKLIDSFGVKVANTPHAVANPTADLGMALLLAVA 140
Query: 496 RQIPQATASMKDGKWER--KKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDP 669
R++ + E ++G E+ G ++A R ++F MK + ++
Sbjct: 141 RRVVEGHQLAISPHTENFSANWLGEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYHNR 200
Query: 670 I--IAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNC 843
E A L+++ DF+ + L P + GL+ +L K ++N
Sbjct: 201 KRRSLEEEEAVGATYCERLDDLLQQSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLINV 260
Query: 844 ARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEKVISCPHLGASTREAQS 1020
RG +VD+ AL+ ALQ+G AALDV EP PRD L++ + V PH+G++T +A+
Sbjct: 261 GRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIGSATHQARR 320
Query: 1021 RCGEEIAIQFVDMVKG 1068
+ E + + + G
Sbjct: 321 QMMENLVESILASLSG 336
>ref|XP_003353764.1| PREDICTED: probable 2-ketogluconate reductase-like isoform 2 [Sus
scrofa].
Length = 328
Score = 102 bits (253), Expect = 1e-21
Identities = 67/256 (26%), Positives = 125/256 (48%), Gaps = 5/256 (1%)
Frame = +1
Query: 316 VTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLA 495
+ +++ + L+V+ +G G+D++DL+ G+ V NTP+ + A+L ++L +A
Sbjct: 63 INQELLQSLPSLRVIASSGVGLDHLDLKLIDSFGVKVANTPHAVANPTADLGMALLLAVA 122
Query: 496 RQIPQATASMKDGKWER--KKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDP 669
R++ + E ++G E+ G ++A R ++F MK + ++
Sbjct: 123 RRVVEGHQLAISPHTENFSANWLGEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYHNR 182
Query: 670 I--IAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNC 843
E A L+++ DF+ + L P + GL+ +L K ++N
Sbjct: 183 KRRSLEEEEAVGATYCERLDDLLQQSDFVMLAVNLTPQSQGLIGRRELSLMKPTATLINV 242
Query: 844 ARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEKVISCPHLGASTREAQS 1020
RG +VD+ AL+ ALQ+G AALDV EP PRD L++ + V PH+G++T +A+
Sbjct: 243 GRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIGSATHQARR 302
Query: 1021 RCGEEIAIQFVDMVKG 1068
+ E + + + G
Sbjct: 303 QMMENLVESILASLSG 318
>ref|XP_001925894.3| PREDICTED: hypothetical protein LOC100154014 [Sus scrofa].
Length = 272
Score = 62.8 bits (151), Expect = 6e-10
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +1
Query: 742 DFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 921
DFI V L P+T GL + + KK +N +RG +V++ L +AL SGQ A A LD
Sbjct: 154 DFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLD 213
Query: 922 VFTEEP-PRDRALVDHEKVISCPHLGAST 1005
V T EP P + L+ + + PH+G++T
Sbjct: 214 VTTPEPLPTNHPLLTLKNCVILPHIGSAT 242
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 53,447,314
Number of extensions: 1710850
Number of successful extensions: 8523
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8444
Number of HSP's successfully gapped: 6
Length of query: 633
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 528
Effective length of database: 8,729,747
Effective search space: 4609306416
Effective search space used: 4609306416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008015
(1899 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058662.2| D-3-phosphoglycerate dehydrogenase [Mus musculu... 921 0.0
Alignment gi|NP_038530.1| C-terminal-binding protein 1 isoform 3 [Mus mus... 119 1e-26
Alignment gi|NP_001185790.1| C-terminal-binding protein 1 isoform 4 [Mus ... 118 1e-26
Alignment gi|NP_001185788.1| C-terminal-binding protein 1 isoform 1 [Mus ... 116 5e-26
Alignment gi|NP_001185789.1| C-terminal-binding protein 1 isoform 2 [Mus ... 116 7e-26
Alignment gi|NP_001164215.1| C-terminal-binding protein 2 isoform 1 [Mus ... 115 1e-25
Alignment gi|NP_034110.1| C-terminal-binding protein 2 isoform 2 [Mus mus... 115 1e-25
Alignment gi|NP_525028.1| glyoxylate reductase/hydroxypyruvate reductase ... 113 5e-25
>ref|NP_058662.2| D-3-phosphoglycerate dehydrogenase [Mus musculus].
Length = 533
Score = 921 bits (2380), Expect = 0.0
Identities = 466/533 (87%), Positives = 486/533 (91%)
Frame = +1
Query: 142 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 321
MAFANLRKVLISDSLDPCCR+ILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT
Sbjct: 1 MAFANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 60
Query: 322 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 501
+DVINAA+KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMI+CLARQ
Sbjct: 61 ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQ 120
Query: 502 IPQATASMKDGKWERKKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAP 681
IPQATASMKDGKW+RKKFMGTELNGK EVATRMQSFGMKT+GYDPII+P
Sbjct: 121 IPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISP 180
Query: 682 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 861
EV+ASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFA CKKGVRVVNCARGGIV
Sbjct: 181 EVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIV 240
Query: 862 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 1041
DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHE VISCPHLGAST+EAQSRCGEEIA
Sbjct: 241 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIA 300
Query: 1042 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 1221
+QFVDMVKG+SL GVVNAQALTSAFSPHTKPWIGLAEA+G LM AWAGSPKGTIQVVTQG
Sbjct: 301 VQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEAMGTLMHAWAGSPKGTIQVVTQG 360
Query: 1222 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAE 1401
TSLKN+GTCLSPAVIVGLL+EAS +ADVNLVNAKLL KEAGL+VTTSHNP PGE+G E
Sbjct: 361 TSLKNAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVTTSHNPGVPGEQGSGE 420
Query: 1402 CLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPT 1581
CLLTVALAGAPYQAVGLVQGT PML LNGAVF FRAQPS+P MLPT
Sbjct: 421 CLLTVALAGAPYQAVGLVQGTTPMLQMLNGAVFRPEVPLRRGQPLLVFRAQPSDPGMLPT 480
Query: 1582 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MIGLLAEA VQLLSYQTS+VSDGE WHVM +SSLLPSLE WKQHV EAFQF F
Sbjct: 481 MIGLLAEAGVQLLSYQTSMVSDGEPWHVMGLSSLLPSLETWKQHVLEAFQFCF 533
>ref|NP_038530.1| C-terminal-binding protein 1 isoform 3 [Mus musculus].
Length = 441
Score = 119 bits (297), Expect = 1e-26
Identities = 112/413 (27%), Positives = 181/413 (43%), Gaps = 14/413 (3%)
Frame = +1
Query: 91 LGVSAPGELQFLRPTPVMAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIA 270
LGV P + P P++A + R + IL+D ++E
Sbjct: 13 LGVRPPIMNGPMHPRPLVALLDGRDCTVE-------MPILKDVATVAFCDAQSTQEIHEK 65
Query: 271 ELQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNS 450
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 66 VLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV 125
Query: 451 LSAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXX 609
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 126 EETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 185
Query: 610 XXEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTG 786
VA R ++FG + YDP ++ + + G+Q++ L+++ D +T+H L
Sbjct: 186 GQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 245
Query: 787 LLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALV 960
L+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L
Sbjct: 246 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 305
Query: 961 DHEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFS-PHT 1128
D +I PH + +A EE A + + GR SL VN LT+A
Sbjct: 306 DAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASM 365
Query: 1129 KPWIGLAEALGALMQAWAGSPKGTIQVVTQGTSLKNSGTCLSPAVIVGLLKEA 1287
P + E GA A++ P G + V G PA + G++ A
Sbjct: 366 DPAVVHPELNGA---AYSRYPPGVVSVAPTGI----------PAAVEGIVPSA 405
>ref|NP_001185790.1| C-terminal-binding protein 1 isoform 4 [Mus musculus].
Length = 430
Score = 118 bits (296), Expect = 1e-26
Identities = 100/352 (28%), Positives = 161/352 (45%), Gaps = 14/352 (3%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 56 LNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVE 115
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 116 ETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 175
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG + YDP ++ + + G+Q++ L+++ D +T+H L L
Sbjct: 176 QAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFS-PHTK 1131
+I PH + +A EE A + + GR SL VN LT+A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATHWASMD 355
Query: 1132 PWIGLAEALGALMQAWAGSPKGTIQVVTQGTSLKNSGTCLSPAVIVGLLKEA 1287
P + E GA A++ P G + V G PA + G++ A
Sbjct: 356 PAVVHPELNGA---AYSRYPPGVVSVAPTGI----------PAAVEGIVPSA 394
>ref|NP_001185788.1| C-terminal-binding protein 1 isoform 1 [Mus musculus].
Length = 440
Score = 116 bits (291), Expect = 5e-26
Identities = 99/354 (27%), Positives = 161/354 (45%), Gaps = 13/354 (3%)
Frame = +1
Query: 91 LGVSAPGELQFLRPTPVMAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIA 270
LGV P + P P++A + R + IL+D ++E
Sbjct: 13 LGVRPPIMNGPMHPRPLVALLDGRDCTVE-------MPILKDVATVAFCDAQSTQEIHEK 65
Query: 271 ELQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNS 450
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 66 VLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV 125
Query: 451 LSAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXX 609
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 126 EETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 185
Query: 610 XXEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTG 786
VA R ++FG + YDP ++ + + G+Q++ L+++ D +T+H L
Sbjct: 186 GQAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 245
Query: 787 LLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALV 960
L+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L
Sbjct: 246 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 305
Query: 961 DHEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSA 1113
D +I PH + +A EE A + + GR SL VN LT+A
Sbjct: 306 DAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAA 359
>ref|NP_001185789.1| C-terminal-binding protein 1 isoform 2 [Mus musculus].
Length = 429
Score = 116 bits (290), Expect = 7e-26
Identities = 87/293 (29%), Positives = 141/293 (48%), Gaps = 13/293 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 56 LNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVE 115
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 116 ETADSTLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 175
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG + YDP ++ + + G+Q++ L+++ D +T+H L L
Sbjct: 176 QAVALRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSA 1113
+I PH + +A EE A + + GR SL VN LT+A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAA 348
>ref|NP_001164215.1| C-terminal-binding protein 2 isoform 1 [Mus musculus].
Length = 988
Score = 115 bits (288), Expect = 1e-25
Identities = 91/301 (30%), Positives = 140/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 616 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 675
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 676 ETADSTVCHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 735
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG I YDP + + S GVQ++ L+++ D +++H L L
Sbjct: 736 QAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 795
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 796 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 855
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFSPHTKP 1134
+I PH + +A E A + + GR SL VN + F + P
Sbjct: 856 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTSAP 910
Query: 1135 W 1137
W
Sbjct: 911 W 911
>ref|NP_034110.1| C-terminal-binding protein 2 isoform 2 [Mus musculus].
Length = 445
Score = 115 bits (288), Expect = 1e-25
Identities = 91/301 (30%), Positives = 140/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 73 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 132
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 133 ETADSTVCHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 192
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG I YDP + + S GVQ++ L+++ D +++H L L
Sbjct: 193 QAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 252
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 253 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 312
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFSPHTKP 1134
+I PH + +A E A + + GR SL VN + F + P
Sbjct: 313 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTSAP 367
Query: 1135 W 1137
W
Sbjct: 368 W 368
>ref|NP_525028.1| glyoxylate reductase/hydroxypyruvate reductase [Mus musculus].
Length = 328
Score = 113 bits (283), Expect = 5e-25
Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 12/302 (3%)
Frame = +1
Query: 151 ANLRKVLISDSLDPCCREILQDGGLQVVEKQN----LSKEELIAELQDCEGLIVRSATKV 318
A L KV ++ L R L VE+ N + +++L + GL+ R + +V
Sbjct: 4 ARLMKVFVTGPLPAEGRAALAQAADCEVEQWNSDDPIPRKDLEQGVVGAHGLLCRLSDRV 63
Query: 319 TSDVINAA-KKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLA 495
+++AA L+V+ GVD++ L+ ++GI V TP + + AEL ++L
Sbjct: 64 DKKLLDAAGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTC 123
Query: 496 RQIPQATASMKDGKWERKK---FMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTI--- 657
R++P+A +K+G W G L+ +A R++ FG++
Sbjct: 124 RRLPEAIEEVKNGGWSSWSPLWMCGYGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYT 183
Query: 658 GYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVV 837
G P P+ +A F + +P+ ++ DFI V L P T GL + F K +
Sbjct: 184 GRQP--RPQEAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFI 241
Query: 838 NCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEKVISCPHLGASTREA 1014
N +RG +V++ L +AL SGQ A A LDV T EP P L+ + + PH+G++T +
Sbjct: 242 NISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKT 301
Query: 1015 QS 1020
++
Sbjct: 302 RN 303
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 70,837,996
Number of extensions: 2179351
Number of successful extensions: 10340
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10119
Number of HSP's successfully gapped: 8
Length of query: 633
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 525
Effective length of database: 12,373,671
Effective search space: 6496177275
Effective search space used: 6496177275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008015
(1899 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006614.2| D-3-phosphoglycerate dehydrogenase [Homo sapien... 924 0.0
Alignment gi|NP_001319.1| C-terminal-binding protein 1 isoform 1 [Homo sa... 117 3e-26
Alignment gi|NP_001012632.1| C-terminal-binding protein 1 isoform 2 [Homo... 116 6e-26
Alignment gi|NP_001077383.1| C-terminal-binding protein 2 isoform 1 [Homo... 115 1e-25
Alignment gi|NP_001320.1| C-terminal-binding protein 2 isoform 1 [Homo sa... 115 1e-25
Alignment gi|NP_073713.2| C-terminal-binding protein 2 isoform 2 [Homo sa... 115 1e-25
Alignment gi|NP_036335.1| glyoxylate reductase/hydroxypyruvate reductase ... 107 4e-23
>ref|NP_006614.2| D-3-phosphoglycerate dehydrogenase [Homo sapiens].
Length = 533
Score = 924 bits (2387), Expect = 0.0
Identities = 468/533 (87%), Positives = 488/533 (91%)
Frame = +1
Query: 142 MAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 321
MAFANLRKVLISDSLDPCCR+ILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT
Sbjct: 1 MAFANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVT 60
Query: 322 SDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMILCLARQ 501
+DVINAA+KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMI+CLARQ
Sbjct: 61 ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQ 120
Query: 502 IPQATASMKDGKWERKKFMGTELNGKVXXXXXXXXXXXEVATRMQSFGMKTIGYDPIIAP 681
IPQATASMKDGKWERKKFMGTELNGK EVATRMQSFGMKTIGYDPII+P
Sbjct: 121 IPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 180
Query: 682 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIV 861
EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLND+TFA CKKGVRVVNCARGGIV
Sbjct: 181 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 240
Query: 862 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHEKVISCPHLGASTREAQSRCGEEIA 1041
DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHE VISCPHLGAST+EAQSRCGEEIA
Sbjct: 241 DEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIA 300
Query: 1042 IQFVDMVKGRSLAGVVNAQALTSAFSPHTKPWIGLAEALGALMQAWAGSPKGTIQVVTQG 1221
+QFVDMVKG+SL GVVNAQALTSAFSPHTKPWIGLAEALG LM+AWAGSPKGTIQV+TQG
Sbjct: 301 VQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQG 360
Query: 1222 TSLKNSGTCLSPAVIVGLLKEASHRADVNLVNAKLLEKEAGLHVTTSHNPAAPGEKGGAE 1401
TSLKN+G CLSPAVIVGLLKEAS +ADVNLVNAKLL KEAGL+VTTSH+PAAPGE+G E
Sbjct: 361 TSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSPAAPGEQGFGE 420
Query: 1402 CLLTVALAGAPYQAVGLVQGTAPMLHALNGAVFXXXXXXXXXXXXXXFRAQPSNPTMLPT 1581
CLL VALAGAPYQAVGLVQGT P+L LNGAVF FR Q S+P MLPT
Sbjct: 421 CLLAVALAGAPYQAVGLVQGTTPVLQGLNGAVFRPEVPLRRDLPLLLFRTQTSDPAMLPT 480
Query: 1582 MIGLLAEARVQLLSYQTSVVSDGETWHVMAISSLLPSLEPWKQHVTEAFQFHF 1740
MIGLLAEA V+LLSYQTS+VSDGETWHVM ISSLLPSLE WKQHVTEAFQFHF
Sbjct: 481 MIGLLAEAGVRLLSYQTSLVSDGETWHVMGISSLLPSLEAWKQHVTEAFQFHF 533
>ref|NP_001319.1| C-terminal-binding protein 1 isoform 1 [Homo sapiens].
Length = 440
Score = 117 bits (294), Expect = 3e-26
Identities = 101/354 (28%), Positives = 161/354 (45%), Gaps = 13/354 (3%)
Frame = +1
Query: 91 LGVSAPGELQFLRPTPVMAFANLRKVLISDSLDPCCREILQDGGLQVVEKQNLSKEELIA 270
LGV P L P P++A + R + IL+D ++E
Sbjct: 13 LGVRPPIMNGPLHPRPLVALLDGRDCTVE-------MPILKDVATVAFCDAQSTQEIHEK 65
Query: 271 ELQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNS 450
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 66 VLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV 125
Query: 451 LSAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXX 609
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 126 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 185
Query: 610 XXEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTG 786
VA R ++FG + YDP ++ V + G+Q++ L+++ D +T+H L
Sbjct: 186 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 245
Query: 787 LLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALV 960
L+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L
Sbjct: 246 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 305
Query: 961 DHEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSA 1113
D +I PH + +A EE A + + GR SL VN LT+A
Sbjct: 306 DAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAA 359
>ref|NP_001012632.1| C-terminal-binding protein 1 isoform 2 [Homo sapiens].
Length = 429
Score = 116 bits (291), Expect = 6e-26
Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 13/293 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+++ R G+G DN+D+++A GI V N P +
Sbjct: 56 LNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVE 115
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 116 ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 175
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLP-LEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG + YDP ++ V + G+Q++ L+++ D +T+H L L
Sbjct: 176 QAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSA 1113
+I PH + +A EE A + + GR SL VN LT+A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAA 348
>ref|NP_001077383.1| C-terminal-binding protein 2 isoform 1 [Homo sapiens].
Length = 445
Score = 115 bits (288), Expect = 1e-25
Identities = 91/301 (30%), Positives = 140/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 73 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 132
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 133 ETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 192
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG I YDP + + S GVQ++ L+++ D +++H L L
Sbjct: 193 QAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 252
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 253 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 312
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFSPHTKP 1134
+I PH + +A E A + + GR SL VN + F + P
Sbjct: 313 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTSAP 367
Query: 1135 W 1137
W
Sbjct: 368 W 368
>ref|NP_001320.1| C-terminal-binding protein 2 isoform 1 [Homo sapiens].
Length = 445
Score = 115 bits (288), Expect = 1e-25
Identities = 91/301 (30%), Positives = 140/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 73 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 132
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 133 ETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 192
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG I YDP + + S GVQ++ L+++ D +++H L L
Sbjct: 193 QAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 252
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 253 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 312
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFSPHTKP 1134
+I PH + +A E A + + GR SL VN + F + P
Sbjct: 313 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTSAP 367
Query: 1135 W 1137
W
Sbjct: 368 W 368
>ref|NP_073713.2| C-terminal-binding protein 2 isoform 2 [Homo sapiens].
Length = 985
Score = 115 bits (288), Expect = 1e-25
Identities = 91/301 (30%), Positives = 140/301 (46%), Gaps = 13/301 (4%)
Frame = +1
Query: 274 LQDCEGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSL 453
L + G ++ +T + + K L+V+ R G+G DNVD++AA GI V N P+
Sbjct: 613 LNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVE 672
Query: 454 SAAELTCGMILCLARQIPQATASMKDG------KWERKKFMGT-ELNGKVXXXXXXXXXX 612
A+ T IL L R+ ++++G + R+ G + G+
Sbjct: 673 ETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTG 732
Query: 613 XEVATRMQSFGMKTIGYDPIIAPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGL 789
VA R ++FG I YDP + + S GVQ++ L+++ D +++H L L
Sbjct: 733 QAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHL 792
Query: 790 LNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVD 963
+ND T ++G +VN ARGG+VDE AL +AL+ G+ GAALDV EP L D
Sbjct: 793 INDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKD 852
Query: 964 HEKVISCPHLGASTREAQSRCGEEIAIQFVDMVKGR---SLAGVVNAQALTSAFSPHTKP 1134
+I PH + +A E A + + GR SL VN + F + P
Sbjct: 853 APNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKE-----FFVTSAP 907
Query: 1135 W 1137
W
Sbjct: 908 W 908
>ref|NP_036335.1| glyoxylate reductase/hydroxypyruvate reductase [Homo sapiens].
Length = 328
Score = 107 bits (267), Expect = 4e-23
Identities = 75/263 (28%), Positives = 128/263 (48%), Gaps = 8/263 (3%)
Frame = +1
Query: 256 EELIAELQDCEGLIVRSATKVTSDVINAA-KKLQVVGRAGTGVDNVDLEAATRKGILVMN 432
+EL + GL+ + V +++AA L+V+ G+D++ L+ ++GI V
Sbjct: 43 KELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGY 102
Query: 433 TPNGNSLSAAELTCGMILCLARQIPQATASMKDGKWERKK---FMGTELNGKVXXXXXXX 603
TP+ + + AEL ++L R++P+A +K+G W K G L
Sbjct: 103 TPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLG 162
Query: 604 XXXXEVATRMQSFGMKTI---GYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLP 774
+A R++ FG++ G P PE +A F + + E+ DFI V L P
Sbjct: 163 RIGQAIARRLKPFGVQRFLYTGRQP--RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTP 220
Query: 775 STTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDR 951
+T GL N F K+ +N +RG +V++ L +AL SG+ A A LDV + EP P +
Sbjct: 221 ATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 280
Query: 952 ALVDHEKVISCPHLGASTREAQS 1020
L+ + + PH+G++T ++
Sbjct: 281 PLLTLKNCVILPHIGSATHRTRN 303
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 84,316,206
Number of extensions: 2645563
Number of successful extensions: 12260
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 12116
Number of HSP's successfully gapped: 7
Length of query: 633
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 524
Effective length of database: 14,704,088
Effective search space: 7704942112
Effective search space used: 7704942112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008015
(1899 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 603 e-169
>Sscrofa_Chr04
|| Length = 143465943
Score = 603 bits (304), Expect = e-169
Identities = 304/304 (100%)
Strand = Plus / Minus
Query: 1588 ggcctcctggcagaagcaagggtgcagctgctgtcctaccagacctcagtggtgtcggat 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111436624 ggcctcctggcagaagcaagggtgcagctgctgtcctaccagacctcagtggtgtcggat 111436565
Query: 1648 ggggagacctggcacgtcatggccatctcctccctgctgcccagcctggagccctggaag 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111436564 ggggagacctggcacgtcatggccatctcctccctgctgcccagcctggagccctggaag 111436505
Query: 1708 cagcacgtgactgaggctttccagttccatttctaacctgaggatcacccgcagcagcct 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111436504 cagcacgtgactgaggctttccagttccatttctaacctgaggatcacccgcagcagcct 111436445
Query: 1768 cgccgggtttccctgatgaaacatacccactgggcgaggcgatccgctttcctggggctg 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111436444 cgccgggtttccctgatgaaacatacccactgggcgaggcgatccgctttcctggggctg 111436385
Query: 1828 acaccgcttttgctgcagactcctgcagtgcaatgataaccactcaataaagagcttacc 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111436384 acaccgcttttgctgcagactcctgcagtgcaatgataaccactcaataaagagcttacc 111436325
Query: 1888 caat 1891
||||
Sbjct: 111436324 caat 111436321
Score = 541 bits (273), Expect = e-151
Identities = 280/281 (99%), Gaps = 1/281 (0%)
Strand = Plus / Minus
Query: 1 caggagggggagataaagggggagcgggagatcgtgaatc-tgcccagttacagaagccc 59
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 111468478 caggagggggagataaagggggagcgggagatcgtgaatcctgcccagttacagaagccc 111468419
Query: 60 gccagccggaagagctgctttgcggtttggtttaggtgtttctgccccgggcgagctgca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111468418 gccagccggaagagctgctttgcggtttggtttaggtgtttctgccccgggcgagctgca 111468359
Query: 120 gtttctgaggccgactccagtaatggcttttgcaaatctacggaaagtgcttatcagtga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111468358 gtttctgaggccgactccagtaatggcttttgcaaatctacggaaagtgcttatcagtga 111468299
Query: 180 tagcctggacccttgctgccgggagatcctgcaagatggagggttgcaggtggtggagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111468298 tagcctggacccttgctgccgggagatcctgcaagatggagggttgcaggtggtggagaa 111468239
Query: 240 gcagaatctgagcaaagaggagctgatagccgagctgcagg 280
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 111468238 gcagaatctgagcaaagaggagctgatagccgagctgcagg 111468198
Score = 450 bits (227), Expect = e-123
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 1351 gtaaccacctcccacaaccctgctgctccgggggagaagggcggtgcggaatgcctcctg 1410
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 111400150 gtaaccacctcccacaaccctgctgctccggaggagcagggcggtgcggaatgcctcctg 111400091
Query: 1411 accgtggccctggcaggtgccccctatcaggccgtgggcttggtccagggcactgcaccc 1470
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 111400090 accgtggccctggcaggtgccccctatcaggccgtgggcttggtccagagcactgcaccc 111400031
Query: 1471 atgctgcacgcactcaacggagctgtcttcagaccagaagtgcctctgcgccgaggcctg 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111400030 atgctgcacgcactcaacggagctgtcttcagaccagaagtgcctctgcgccgaggcctg 111399971
Query: 1531 cccctgctcctgttccgggctcagccctccaaccctaccatgctgccgaccatgattgg 1589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111399970 cccctgctcctgttccgggctcagccctccaaccctaccatgctgccgaccatgattgg 111399912
Score = 450 bits (227), Expect = e-123
Identities = 236/239 (98%)
Strand = Plus / Minus
Query: 1351 gtaaccacctcccacaaccctgctgctccgggggagaagggcggtgcggaatgcctcctg 1410
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 111437919 gtaaccacctcccacaaccctgctgctccggaggagcagggcggtgcggaatgcttcctg 111437860
Query: 1411 accgtggccctggcaggtgccccctatcaggccgtgggcttggtccagggcactgcaccc 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111437859 accgtggccctggcaggtgccccctatcaggccgtgggcttggtccagggcactgcaccc 111437800
Query: 1471 atgctgcacgcactcaacggagctgtcttcagaccagaagtgcctctgcgccgaggcctg 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111437799 atgctgcacgcactcaacggagctgtcttcagaccagaagtgcctctgcgccgaggcctg 111437740
Query: 1531 cccctgctcctgttccgggctcagccctccaaccctaccatgctgccgaccatgattgg 1589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111437739 cccctgctcctgttccgggctcagccctccaaccctaccatgctgccgaccatgattgg 111437681
Score = 307 bits (155), Expect = 1e-80
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 277 caggactgcgaaggccttattgtccgctcggccaccaaggtgacctccgatgtcatcaac 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111462561 caggactgcgaaggccttattgtccgctcggccaccaaggtgacctccgatgtcatcaac 111462502
Query: 337 gcggccaagaagctccaggtggtgggcagggccggcacgggcgtggacaacgtggatctg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111462501 gcggccaagaagctccaggtggtgggcagggccggcacgggcgtggacaacgtggatctg 111462442
Query: 397 gaagctgccaccaggaaggggatcctggtcatgaa 431
|||||||||||||||||||||||||||||||||||
Sbjct: 111462441 gaagctgccaccaggaaggggatcctggtcatgaa 111462407
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 782 caggcctgctgaacgacagcacctttgccctttgcaagaagggggtgcgcgtggtgaact 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111444971 caggcctgctgaacgacagcacctttgccctttgcaagaagggggtgcgcgtggtgaact 111444912
Query: 842 gtgctcgcggagggatcgtggacgaaggcgccctgctccgggccctgcagtcgggtcaat 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111444911 gtgctcgcggagggatcgtggacgaaggcgccctgctccgggccctgcagtcgggtcaat 111444852
Query: 902 gcgctggagccgcgctcgacgtgttcacggagg 934
|||||||||||||||||||||||||||||||||
Sbjct: 111444851 gcgctggagccgcgctcgacgtgttcacggagg 111444819
Score = 299 bits (151), Expect = 3e-78
Identities = 157/159 (98%)
Strand = Plus / Minus
Query: 932 aggaaccaccccgggaccgggccttggtggaccacgagaaggtcatcagctgcccccacc 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111406167 aggaaccaccccgggaccgggccttggtggaccacgagaaggtcatcagctgcccccacc 111406108
Query: 992 tgggcgccagcacgagggaggcccagagccgctgcggggaggaaatcgccatccagttcg 1051
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111406107 tgggcgccagcaccagggaggcccagagccgctgcggggaggaaatcgccatccagttcg 111406048
Query: 1052 tggacatggtgaaggggaggtccctggctggcgttgtaa 1090
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 111406047 tggacatggtgaaggggaggtccctggccggcgttgtaa 111406009
Score = 299 bits (151), Expect = 3e-78
Identities = 157/159 (98%)
Strand = Plus / Minus
Query: 932 aggaaccaccccgggaccgggccttggtggaccacgagaaggtcatcagctgcccccacc 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111443938 aggaaccaccccgggaccgggccttggtggaccacgagaaggtcatcagctgcccccacc 111443879
Query: 992 tgggcgccagcacgagggaggcccagagccgctgcggggaggaaatcgccatccagttcg 1051
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111443878 tgggcgccagcaccagggaggcccagagccgctgcggggaggaaatcgccatccagttcg 111443819
Query: 1052 tggacatggtgaaggggaggtccctggctggcgttgtaa 1090
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 111443818 tggacatggtgaaggggaggtccctggccggcgttgtaa 111443780
Score = 270 bits (136), Expect = 3e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 650 agactatagggtatgatcctatcattgctccagaggtctcggcctcctttggtgtgcagc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111445643 agactatagggtatgatcctatcattgctccagaggtctcggcctcctttggtgtgcagc 111445584
Query: 710 agctgcccctggaggagatctggcccctctgtgattttatcaccgtgcatacacctctcc 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111445583 agctgcccctggaggagatctggcccctctgtgattttatcaccgtgcatacacctctcc 111445524
Query: 770 tgccttccaccacagg 785
||||||||||||||||
Sbjct: 111445523 tgccttccaccacagg 111445508
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1087 gtaaacgcccaggctcttaccagtgccttctctccacacaccaagccttggattggtctg 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111402325 gtaaacgcccaggctcttaccagtgccttctctccacacaccaagccttggattggtctg 111402266
Query: 1147 gctgaagctctgggggcactgatgcaagcctgggctgggtcccccaaagggaccatccag 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111402265 gctgaagctctgggggcactgatgcaagcctgggctgggtcccccaaagggaccatccag 111402206
Query: 1207 gtggtaacacaggg 1220
||||||||||||||
Sbjct: 111402205 gtggtaacacaggg 111402192
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1219 ggaacgtccctgaagaattctgggacctgcctgagccccgctgtcattgtcggcctcctg 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111438795 ggaacgtccctgaagaattctgggacctgcctgagccccgctgtcattgtcggcctcctg 111438736
Query: 1279 aaggaagcttcccatcgggcggacgtgaacttggtgaacgccaagctgctggagaaagag 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111438735 aaggaagcttcccatcgggcggacgtgaacttggtgaacgccaagctgctggagaaagag 111438676
Query: 1339 gctggcctccatgt 1352
||||||||||||||
Sbjct: 111438675 gctggcctccatgt 111438662
Score = 266 bits (134), Expect = 4e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1087 gtaaacgcccaggctcttaccagtgccttctctccacacaccaagccttggattggtctg 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111440091 gtaaacgcccaggctcttaccagtgccttctctccacacaccaagccttggattggtctg 111440032
Query: 1147 gctgaagctctgggggcactgatgcaagcctgggctgggtcccccaaagggaccatccag 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111440031 gctgaagctctgggggcactgatgcaagcctgggctgggtcccccaaagggaccatccag 111439972
Query: 1207 gtggtaacacaggg 1220
||||||||||||||
Sbjct: 111439971 gtggtaacacaggg 111439958
Score = 258 bits (130), Expect = 1e-65
Identities = 133/134 (99%)
Strand = Plus / Minus
Query: 1219 ggaacgtccctgaagaattctgggacctgcctgagccccgctgtcattgtcggcctcctg 1278
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 111401029 ggaacgtccctgaagaattctgggacctgcctgagccccgctgtcattgttggcctcctg 111400970
Query: 1279 aaggaagcttcccatcgggcggacgtgaacttggtgaacgccaagctgctggagaaagag 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111400969 aaggaagcttcccatcgggcggacgtgaacttggtgaacgccaagctgctggagaaagag 111400910
Query: 1339 gctggcctccatgt 1352
||||||||||||||
Sbjct: 111400909 gctggcctccatgt 111400896
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 1588 ggcctcctggcagaagcaagggtgcagctgctgtcctaccagacctcagtggtgtcggat 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111398849 ggcctcctggcagaagcaagggtgcagctgctgtcctaccagacctcagtggtgtcggat 111398790
Query: 1648 ggggagacctggcacgtcatggccatctcctccctgctgcccagcctggagccc 1701
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111398789 ggggagacctggcacgtcatggccatctcctccctgctgcccagcctggagccc 111398736
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 551 agttcatgggaacagagctgaacggaaaggtcctgggaattcttggcctgggcagaattg 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111456190 agttcatgggaacagagctgaacggaaaggtcctgggaattcttggcctgggcagaattg 111456131
Query: 611 ggagagaggtggccacccggatgcaatcctttgggatgaag 651
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 111456130 ggagagaggtggccacccggatgcaatcctttgggatgaag 111456090
Score = 133 bits (67), Expect = 4e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 432 cacccccaatggaaacagcctcagtgccgcggagctcacctgtgggatgatcttgtgcct 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111459684 cacccccaatggaaacagcctcagtgccgcggagctcacctgtgggatgatcttgtgcct 111459625
Query: 492 ggccagg 498
|||||||
Sbjct: 111459624 ggccagg 111459618
Score = 115 bits (58), Expect = 9e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 495 caggcagattccccaggcgacagcttccatgaaggatggcaaatgggagcggaaaaag 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111456331 caggcagattccccaggcgacagcttccatgaaggatggcaaatgggagcggaaaaag 111456274
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,403,091
Number of extensions: 326
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 17
Length of query: 1899
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1877
Effective length of database: 2,808,408,574
Effective search space: 5271382893398
Effective search space used: 5271382893398
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)