Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008016
(1759 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_615015.3| PREDICTED: phosphonoformate immuno-associated p... 565 e-164
Alignment gi|XP_002691802.1| PREDICTED: NEDD4 binding protein 2-like 2 [B... 565 e-164
>ref|XP_615015.3| PREDICTED: phosphonoformate immuno-associated protein 5 [Bos taurus].
Length = 1615
Score = 565 bits (1455), Expect(2) = e-164
Identities = 284/426 (66%), Positives = 323/426 (75%), Gaps = 7/426 (1%)
Frame = +1
Query: 205 KMSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPI 384
KM Y E+ KSMG EEL EPC KKLKSTEEAYVFP+HG+ NF+R +EKTGS PV I
Sbjct: 404 KMPYGEVETKSMGREEELLSEPCSKKLKSTEEAYVFPYHGSGNFYRKQEKTGSDWTPVTI 463
Query: 385 IDSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYST 564
+ RG S+ QEDKT+TTD+LKP HD MP DRP+V ES DSQ++QD P LVS DD+IYST
Sbjct: 464 TNVRGHSYLQEDKTQTTDLLKPEHDGMPSDRPDVIESVDSQVVQDIHPPLVSTDDEIYST 523
Query: 565 STAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGG-----QEEKQKFNSKTSEIDNELSQ 729
S AFIGPIY CN+ R+QADTING DGK G ++ KQKFNSK SEIDNEL Q
Sbjct: 524 SKAFIGPIYKPPEEKKCNDGRNQADTINGRDGKNGRDGKRKQNKQKFNSKKSEIDNELFQ 583
Query: 730 FYKEIEELENEK-DSESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFD 906
FYKEIEELENEK DSESSCKE EPS++QLI YYQ NN++LK EEEKKK LSN Q H
Sbjct: 584 FYKEIEELENEKDDSESSCKEPEPSEKQLIAYYQNPNNDLLKSEEEKKKYLSNGLQPHCG 643
Query: 907 YQQCDGNEPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRF 1086
YQQ GNEPG+YPCNGQ+IPTFCD+SFTSF PEWQ+M SF+VPQDP +PSFN HLNI+RF
Sbjct: 644 YQQWVGNEPGKYPCNGQMIPTFCDDSFTSFRPEWQAMDSFVVPQDPHLPSFNYHLNIERF 703
Query: 1087 SVPPNPPS-IFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSSTNGC 1263
SVPPNPPS IFH+QD F+MQ GY+++SC NWDC TFD N+ YT+C SSD S N
Sbjct: 704 SVPPNPPSNIFHSQDDFEMQNGYFINSCHANWDCLTFDENNEYTDC----SSDHPSRNDY 759
Query: 1264 AVQDGYASNGFCETREGCWKDSSVYQHNGTDRFMNQQFQEEXXXXXXXXXXXXXXXPGSG 1443
+VQDGYASNGFCET E WKD SV + NGTDRF+NQQF+EE PGSG
Sbjct: 760 SVQDGYASNGFCETSERYWKDPSVEECNGTDRFINQQFEEEKLHKLQKLLILLRGLPGSG 819
Query: 1444 KTTLSR 1461
KTTLSR
Sbjct: 820 KTTLSR 825
Score = 33.1 bits (74), Expect(2) = e-164
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 29 GRHLAYGGAACCSSPEGRVFS 91
GRHLAYG AAC S+PE FS
Sbjct: 357 GRHLAYGVAACFSAPEVPAFS 377
>ref|XP_002691802.1| PREDICTED: NEDD4 binding protein 2-like 2 [Bos taurus].
Length = 1290
Score = 565 bits (1455), Expect(2) = e-164
Identities = 284/426 (66%), Positives = 323/426 (75%), Gaps = 7/426 (1%)
Frame = +1
Query: 205 KMSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPI 384
KM Y E+ KSMG EEL EPC KKLKSTEEAYVFP+HG+ NF+R +EKTGS PV I
Sbjct: 79 KMPYGEVETKSMGREEELLSEPCSKKLKSTEEAYVFPYHGSGNFYRKQEKTGSDWTPVTI 138
Query: 385 IDSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYST 564
+ RG S+ QEDKT+TTD+LKP HD MP DRP+V ES DSQ++QD P LVS DD+IYST
Sbjct: 139 TNVRGHSYLQEDKTQTTDLLKPEHDGMPSDRPDVIESVDSQVVQDIHPPLVSTDDEIYST 198
Query: 565 STAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGG-----QEEKQKFNSKTSEIDNELSQ 729
S AFIGPIY CN+ R+QADTING DGK G ++ KQKFNSK SEIDNEL Q
Sbjct: 199 SKAFIGPIYKPPEEKKCNDGRNQADTINGRDGKNGRDGKRKQNKQKFNSKKSEIDNELFQ 258
Query: 730 FYKEIEELENEK-DSESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFD 906
FYKEIEELENEK DSESSCKE EPS++QLI YYQ NN++LK EEEKKK LSN Q H
Sbjct: 259 FYKEIEELENEKDDSESSCKEPEPSEKQLIAYYQNPNNDLLKSEEEKKKYLSNGLQPHCG 318
Query: 907 YQQCDGNEPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRF 1086
YQQ GNEPG+YPCNGQ+IPTFCD+SFTSF PEWQ+M SF+VPQDP +PSFN HLNI+RF
Sbjct: 319 YQQWVGNEPGKYPCNGQMIPTFCDDSFTSFRPEWQAMDSFVVPQDPHLPSFNYHLNIERF 378
Query: 1087 SVPPNPPS-IFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSSTNGC 1263
SVPPNPPS IFH+QD F+MQ GY+++SC NWDC TFD N+ YT+C SSD S N
Sbjct: 379 SVPPNPPSNIFHSQDDFEMQNGYFINSCHANWDCLTFDENNEYTDC----SSDHPSRNDY 434
Query: 1264 AVQDGYASNGFCETREGCWKDSSVYQHNGTDRFMNQQFQEEXXXXXXXXXXXXXXXPGSG 1443
+VQDGYASNGFCET E WKD SV + NGTDRF+NQQF+EE PGSG
Sbjct: 435 SVQDGYASNGFCETSERYWKDPSVEECNGTDRFINQQFEEEKLHKLQKLLILLRGLPGSG 494
Query: 1444 KTTLSR 1461
KTTLSR
Sbjct: 495 KTTLSR 500
Score = 33.1 bits (74), Expect(2) = e-164
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +2
Query: 29 GRHLAYGGAACCSSPEGRVFS 91
GRHLAYG AAC S+PE FS
Sbjct: 32 GRHLAYGVAACFSAPEVPAFS 52
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,214,778
Number of extensions: 1398143
Number of successful extensions: 4391
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4368
Number of HSP's successfully gapped: 4
Length of query: 586
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 478
Effective length of database: 14,107,870
Effective search space: 6743561860
Effective search space used: 6743561860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008016
(1759 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534508.2| PREDICTED: similar to CG7139-PA, isoform A [Can... 522 e-148
>ref|XP_534508.2| PREDICTED: similar to CG7139-PA, isoform A [Canis familiaris].
Length = 1204
Score = 522 bits (1345), Expect = e-148
Identities = 268/421 (63%), Positives = 307/421 (72%), Gaps = 3/421 (0%)
Frame = +1
Query: 208 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 387
M Y EI AKS+GHGEE+T EPCYKKLKS EE YVF H G+ANF RI+EKTGS VPV +
Sbjct: 1 MPYGEIEAKSLGHGEEITGEPCYKKLKSAEETYVFSHRGSANFLRIQEKTGSDWVPVTTV 60
Query: 388 DSRGRSHPQEDKTRTTDVLKPVHDEM-PGDRPNVTESTDSQILQDTRPALVSKDDDIYST 564
D RG + Q+DKT+ TD LKPVH+EM R +V ES D PALVS DD+IYST
Sbjct: 61 DVRGHIYAQKDKTKATDSLKPVHEEMCSNSRSDVIESIDPG------PALVSTDDEIYST 114
Query: 565 STAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEI 744
S AFIGPIY CNE+ + + T +GIDGKG +E+KQKFNSK SE+DNEL QFYKEI
Sbjct: 115 SKAFIGPIYKPPEKKKCNERGNHSVTSSGIDGKGRREQKQKFNSKVSELDNELFQFYKEI 174
Query: 745 EELENEKDS-ESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFDYQQCD 921
EELENEKD E S E EPS+E+L+ Y Q HNN++LK EE K++D SN QSH YQQ
Sbjct: 175 EELENEKDDLEGSYNEPEPSEEKLVTYCQDHNNDLLKSEEGKERDNSNVLQSHCGYQQHV 234
Query: 922 GNEPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRFSVPPN 1101
GNEPG+YP NGQVIPTFCD+SFTSF PEWQS+HSFIVP P PSFN HLNIQRFS PPN
Sbjct: 235 GNEPGKYPYNGQVIPTFCDDSFTSFRPEWQSVHSFIVPHGPPPPSFNYHLNIQRFSAPPN 294
Query: 1102 PPS-IFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSSTNGCAVQDG 1278
PPS IFH QDGFQ Q GYYV+SC +NW+C TFD N+ Y +CS+ TS D SSTN + QD
Sbjct: 295 PPSNIFHVQDGFQHQNGYYVNSCHINWNCLTFDPNNDYIDCSENTSRDHSSTNDYSEQDE 354
Query: 1279 YASNGFCETREGCWKDSSVYQHNGTDRFMNQQFQEEXXXXXXXXXXXXXXXPGSGKTTLS 1458
Y SNGFCETREGCW ++ + +HNGT R MNQ FQEE PGSGKTTLS
Sbjct: 355 YVSNGFCETREGCW-ENPMDKHNGTGRLMNQHFQEEKLNKLQKLLILLRGLPGSGKTTLS 413
Query: 1459 R 1461
R
Sbjct: 414 R 414
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,807,653
Number of extensions: 1448550
Number of successful extensions: 4819
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4793
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 478
Effective length of database: 15,274,216
Effective search space: 7301075248
Effective search space used: 7301075248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008016
(1759 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924666.1| PREDICTED: NEDD4-binding protein 2-like 2-li... 831 0.0
>ref|XP_001924666.1| PREDICTED: NEDD4-binding protein 2-like 2-like [Sus scrofa].
Length = 581
Score = 831 bits (2146), Expect = 0.0
Identities = 394/418 (94%), Positives = 395/418 (94%)
Frame = +1
Query: 208 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 387
MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII
Sbjct: 1 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 60
Query: 388 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 567
DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS
Sbjct: 61 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 120
Query: 568 TAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 747
TAFIGPIY CNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE
Sbjct: 121 TAFIGPIYKPPKKKKCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 180
Query: 748 ELENEKDSESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFDYQQCDGN 927
ELENEKDSESSCKELEPSKEQLIPYYQGHNNEVLKFEE+KKKDLSNSPQSHFDYQQCDGN
Sbjct: 181 ELENEKDSESSCKELEPSKEQLIPYYQGHNNEVLKFEEKKKKDLSNSPQSHFDYQQCDGN 240
Query: 928 EPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRFSVPPNPP 1107
EPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRFSVPPNPP
Sbjct: 241 EPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRFSVPPNPP 300
Query: 1108 SIFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSSTNGCAVQDGYAS 1287
SIFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSSTNGCAVQDGY S
Sbjct: 301 SIFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSSTNGCAVQDGYVS 360
Query: 1288 NGFCETREGCWKDSSVYQHNGTDRFMNQQFQEEXXXXXXXXXXXXXXXPGSGKTTLSR 1461
NGFCETREGCWKDSSVYQHNGTDRFMNQQFQEE PGSGKTTLSR
Sbjct: 361 NGFCETREGCWKDSSVYQHNGTDRFMNQQFQEEKLNKLQKLLILLRGLPGSGKTTLSR 418
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,651,131
Number of extensions: 886866
Number of successful extensions: 2763
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2745
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 482
Effective length of database: 8,754,644
Effective search space: 4219738408
Effective search space used: 4219738408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008016
(1759 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958757.2| NEDD4-binding protein 2-like 2 [Mus musculus]. 408 e-114
>ref|NP_958757.2| NEDD4-binding protein 2-like 2 [Mus musculus].
Length = 575
Score = 408 bits (1048), Expect = e-114
Identities = 226/421 (53%), Positives = 278/421 (66%), Gaps = 3/421 (0%)
Frame = +1
Query: 208 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 387
M Y E+ AK +G G+E T EPCYKKLKS + V P G + HRI+EK ++RV V I
Sbjct: 1 MPYSEVEAKFLGPGKEQTREPCYKKLKSAADDGVSPLRGGPDIHRIQEKPRNNRVAVATI 60
Query: 388 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 567
+ R R PQEDKT +TDVLKP+H EMPGD+ +ES S LQD +P+ ++KDD+IYSTS
Sbjct: 61 NFRRRVCPQEDKT-STDVLKPLHKEMPGDKLGGSESIGSPALQDGKPSPLAKDDEIYSTS 119
Query: 568 TAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 747
AFIGPIY C E++ + DT + ID K QEEKQK NSK E+D ELSQFYKEIE
Sbjct: 120 KAFIGPIYKPPEKKKCRERKSETDTFSSIDSKRRQEEKQKSNSKKLEMDTELSQFYKEIE 179
Query: 748 ELENEKD-SESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFDYQQCDG 924
ELENE + S+ SC E EPS+E +I Y N LK EEE KDLS+ QSH YQ+
Sbjct: 180 ELENENEASQGSCTEPEPSEEPIISYDWACN--TLKSEEE-NKDLSDVLQSHCGYQEYLE 236
Query: 925 NEPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRFSVPPNP 1104
+EP +YPC+ Q++P FC+ SF SF PEWQSMH F++P DP + SFN + N QRF P +P
Sbjct: 237 DEP-DYPCDEQLMPAFCETSFPSFRPEWQSMHPFVIPHDP-LSSFN-YFNFQRFGTPLHP 293
Query: 1105 -PSIFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSS-TNGCAVQDG 1278
P +FH +D QMQ G YVDS Q W C TFD ND Y D+TS+++ NGC+VQD
Sbjct: 294 SPDVFHGRDDSQMQNGCYVDSYQDGWSCLTFDQNDEYAN-YDVTSNNVHPFRNGCSVQDE 352
Query: 1279 YASNGFCETREGCWKDSSVYQHNGTDRFMNQQFQEEXXXXXXXXXXXXXXXPGSGKTTLS 1458
+NGFCE RE CW+D S+ +HN TDRF+NQ FQEE PGSGKTTLS
Sbjct: 353 SVNNGFCEIRE-CWQDPSMDKHNETDRFVNQWFQEEKLNKLQKLLILLRGLPGSGKTTLS 411
Query: 1459 R 1461
R
Sbjct: 412 R 412
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,532,861
Number of extensions: 1238222
Number of successful extensions: 3875
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3801
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 479
Effective length of database: 12,403,707
Effective search space: 5941375653
Effective search space used: 5941375653
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008016
(1759 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055702.1| NEDD4-binding protein 2-like 2 isoform 2 [Homo ... 539 e-153
>ref|NP_055702.1| NEDD4-binding protein 2-like 2 isoform 2 [Homo sapiens].
Length = 583
Score = 539 bits (1388), Expect = e-153
Identities = 270/421 (64%), Positives = 318/421 (75%), Gaps = 3/421 (0%)
Frame = +1
Query: 208 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 387
MSY EI K +G EE+T EP KKLKST E+YVF +H NA+FHRI+EKTG+ VPV II
Sbjct: 1 MSYGEIEGKFLGPREEVTSEPRCKKLKSTTESYVFHNHSNADFHRIQEKTGNDWVPVTII 60
Query: 388 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 567
D RG S+ QE+K +TTD+ +P+HDEMPG+RP+V ES DSQ+LQ+ RP LVS DD+IYSTS
Sbjct: 61 DVRGHSYLQENKIKTTDLHRPLHDEMPGNRPDVIESIDSQVLQEARPPLVSADDEIYSTS 120
Query: 568 TAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 747
AFIGPIY NE R++A +NGI+ +GGQ+EKQKFNS+ SEIDNEL QFYKEIE
Sbjct: 121 KAFIGPIYKPPEKKKRNEGRNEAHVLNGINDRGGQKEKQKFNSEKSEIDNELFQFYKEIE 180
Query: 748 ELENEKDS-ESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQ-SHFDYQQCD 921
ELE EKD E+SCKE EPS+EQ +P+Y+GHNN +LK +EE KKDLSN SH DYQQ
Sbjct: 181 ELEKEKDGFENSCKESEPSQEQFVPFYEGHNNGLLKPDEE-KKDLSNKAMPSHCDYQQNL 239
Query: 922 GNEPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRFSVPPN 1101
GNEP +YPCNGQVIPTFCD SFTSF PEWQS++ FIVP P +PS N HLNIQRFS PPN
Sbjct: 240 GNEPDKYPCNGQVIPTFCDTSFTSFRPEWQSVYPFIVPYGPPLPSLNYHLNIQRFSGPPN 299
Query: 1102 PPS-IFHTQDGFQMQRGYYVDSCQVNWDCSTFDHNDAYTECSDITSSDLSSTNGCAVQDG 1278
PPS IF QD Q+Q GYYV++C VNW+C TFD N+ YT+CS+ SS S NGC++QD
Sbjct: 300 PPSNIFQAQDDSQIQNGYYVNNCHVNWNCMTFDQNNEYTDCSENRSSVHPSGNGCSMQDR 359
Query: 1279 YASNGFCETREGCWKDSSVYQHNGTDRFMNQQFQEEXXXXXXXXXXXXXXXPGSGKTTLS 1458
Y SNGFCE RE CWKD + +HNGTDRF+NQQFQEE PGSGKTTLS
Sbjct: 360 YVSNGFCEVRERCWKDHCMDKHNGTDRFVNQQFQEEKLNKLQKLLILLRGLPGSGKTTLS 419
Query: 1459 R 1461
R
Sbjct: 420 R 420
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,910,318
Number of extensions: 1441201
Number of successful extensions: 4589
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4566
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 478
Effective length of database: 14,737,052
Effective search space: 7044310856
Effective search space used: 7044310856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008016
(1759 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 2989 0.0
>Sscrofa_Chr11
|| Length = 87690581
Score = 2989 bits (1508), Expect = 0.0
Identities = 1543/1554 (99%), Gaps = 3/1554 (0%)
Strand = Plus / Plus
Query: 206 agatgtcttatgatgaaattggagctaaatccatgggacatggggaagaactaacaattg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8717863 agatgtcttatgatgaaattggagctaaatccatgggacatggggaagaactaacaattg 8717922
Query: 266 aaccatgctataagaaactgaagtctactgaagaggcgtatgttttcccccatcatggaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8717923 aaccatgctataagaaactgaagtctactgaagaggcgtatgttttcccccatcatggaa 8717982
Query: 326 acgctaattttcacagaatcaaagagaaaactggaagtcatcgggtccctgtgcccatca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8717983 acgctaattttcacagaatcaaagagaaaactggaagtcatcgggtccctgtgcccatca 8718042
Query: 386 ttgatagcagaggacgtagtcatcctcaggaggacaaaaccagaactacagacgtgctga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718043 ttgatagcagaggacgtagtcatcctcaggaggacaaaaccagaactacagacgtgctga 8718102
Query: 446 aacctgtgcatgatgagatgcctggtgatagaccaaacgtcaccgagtctactgattcac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718103 aacctgtgcatgatgagatgcctggtgatagaccaaacgtcaccgagtctactgattcac 8718162
Query: 506 agattttacaggatacacgccctgcattggtatccaaagatgatgatatatatagtacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718163 agattttacaggatacacgccctgcattggtatccaaagatgatgatatatatagtacaa 8718222
Query: 566 gtacagcatttataggacccatttacaaaccccctaagaaaaagaaatgtaatgaaaaga 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8718223 gtacagcatttataggacccatttacaaaccccctaagaaaaagaaatgtaatgaaaaaa 8718282
Query: 626 gggatcaagcagacactatcaatggtatagatggcaaaggaggacaagaagagaaacaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718283 gggatcaagcagacactatcaatggtatagatggcaaaggaggacaagaagagaaacaga 8718342
Query: 686 aatttaactccaaaacatcagagatcgacaatgaattatctcagttttacaaagaaatcg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718343 aatttaactccaaaacatcagagatcgacaatgaattatctcagttttacaaagaaatcg 8718402
Query: 746 aagagcttgaaaatgaaaaagattcagaaagcagctgtaaggagcttgaaccctctaagg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718403 aagagcttgaaaatgaaaaagattcagaaagcagctgtaaggagcttgaaccctctaagg 8718462
Query: 806 aacaacttattccatattatcagggtcataataatgaggtattaaaatttgaagaagaaa 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8718463 aacaacttattccatattatcagggtcataataatgaggtattaaaatttgaagaaaaaa 8718522
Query: 866 agaaaaaggatcttagtaatagtcctcagtcacattttgattatcaacagtgtgatggga 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718523 agaaaaaggatcttagtaatagtcctcagtcacattttgattatcaacagtgtgatggga 8718582
Query: 926 atgagccaggcgaatatccttgtaatggacaagtaatacctacattttgtgataattcgt 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718583 atgagccaggcgaatatccttgtaatggacaagtaatacctacattttgtgataattcgt 8718642
Query: 986 ttacttccttcatgcctgaatggcagtcaatgcattcttttatagttccccaagatcctt 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718643 ttacttccttcatgcctgaatggcagtcaatgcattcttttatagttccccaagatcctt 8718702
Query: 1046 gtgttcccagttttaactgtcacttaaatattcaaagattcagtgttccaccaaatccac 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718703 gtgttcccagttttaactgtcacttaaatattcaaagattcagtgttccaccaaatccac 8718762
Query: 1106 caagtattttccacacccaagatggctttcagatgcaacgtggatattatgtagatagtt 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718763 caagtattttccacacccaagatggctttcagatgcaacgtggatattatgtagatagtt 8718822
Query: 1166 gtcaggttaactgggattgctcgacttttgatcacaacgatgcatacactgagtgtagtg 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718823 gtcaggttaactgggattgctcgacttttgatcacaacgatgcatacactgagtgtagtg 8718882
Query: 1226 acattaccagtagtgatctttcctctacaaatggctgtgctgtgcaggatggatatgcta 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8718883 acattaccagtagtgatctttcctctacaaatggctgtgctgtgcaggatggatatgtta 8718942
Query: 1286 gtaatggtttctgtgaaaccagagaaggatgctggaaagattcttctgtttaccagcata 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718943 gtaatggtttctgtgaaaccagagaaggatgctggaaagattcttctgtttaccagcata 8719002
Query: 1346 atggaacagacaggtttatgaaccagcagtttcaagaggaaaagttaaataaattacaga 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8719003 atggaacagacaggtttatgaaccagcagtttcaagaggaaaagttaaataaattacaga 8719062
Query: 1406 agttacttattcttttaagaggtttgcctggttctgggaaaacaacgttgtctcggtaag 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8719063 agttacttattcttttaagaggtttgcctggttctgggaaaacaacgttgtctcggtaag 8719122
Query: 1466 taaaggataccaagtgaatacttggtaattcattacttaaacgttataattgatagttgt 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8719123 taaaggataccaagtgaatacttggtaattcattacttaaacgttataattgatagttgt 8719182
Query: 1526 aatcaatagcagcagatgcttttatgcttctactagaaaaattttattttgttatacttg 1585
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 8719183 aatcaat---agcagatgcttttatgcttctactagaaaaattttaatttgtcatacttg 8719239
Query: 1586 agaatggcatctgacagtaaatattttagcagacattttgtgatagaggaaatgagattg 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8719240 agaatggcatctgacagtaaatattttagcagacattttgtgatagaggaaatgagattg 8719299
Query: 1646 gcatatgaaatgatgttacgattctgctaagggcttttaatatagattcaccatgtataa 1705
||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8719300 gcatatgaattgatgttaagattctgctaagggctttaaatatagattcaccatgtataa 8719359
Query: 1706 ttacgacagtgacgaaagcaaatgcagtttgagaactgtgctggccttcccttt 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8719360 ttacgacagtgacgaaagcaaatgcagtttgagaactgtgctggccttcccttt 8719413
Score = 410 bits (207), Expect = e-111
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 1 gtaatcccttccggggtaaccgtgaggtggccgacatcttgcttacggaggtgcggcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8713904 gtaatcccttccggggtaaccgtgaggtggccgacatcttgcttacggaggtgcggcttg 8713963
Query: 61 ttgctcatctcctgagggccgggtttttagtcgctccgggtttcaggtttgggccgtctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8713964 ttgctcatctcctgagggccgggtttttagtcgctccgggtttcaggtttgggccgtctc 8714023
Query: 121 cccgcgcttctttcacctgagatgttcgtgtgtttctagaagaagacttcattgggaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8714024 cccgcgcttctttcacctgagatgttcgtgtgtttctagaagaagacttcattgggaagt 8714083
Query: 181 aaaggtcaatgcagagctgtgtgtaag 207
|||||||||||||||||||||||||||
Sbjct: 8714084 aaaggtcaatgcagagctgtgtgtaag 8714110
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 63,886,256
Number of extensions: 656
Number of successful extensions: 656
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 2
Length of query: 1759
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1737
Effective length of database: 2,808,408,574
Effective search space: 4878205693038
Effective search space used: 4878205693038
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)