Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008017
(1114 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_615015.3| PREDICTED: phosphonoformate immuno-associated p... 431 e-121
Alignment gi|XP_002691802.1| PREDICTED: NEDD4 binding protein 2-like 2 [B... 431 e-121
>ref|XP_615015.3| PREDICTED: phosphonoformate immuno-associated protein 5 [Bos taurus].
Length = 1615
Score = 431 bits (1107), Expect(2) = e-121
Identities = 219/322 (68%), Positives = 247/322 (76%), Gaps = 7/322 (2%)
Frame = +2
Query: 170 KMSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPI 349
KM Y E+ KSMG EEL EPC KKLKSTEEAYVFP+HG+ NF+R +EKTGS PV I
Sbjct: 404 KMPYGEVETKSMGREEELLSEPCSKKLKSTEEAYVFPYHGSGNFYRKQEKTGSDWTPVTI 463
Query: 350 IDSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYST 529
+ RG S+ QEDKT+TTD+LKP HD MP DRP+V ES DSQ++QD P LVS DD+IYST
Sbjct: 464 TNVRGHSYLQEDKTQTTDLLKPEHDGMPSDRPDVIESVDSQVVQDIHPPLVSTDDEIYST 523
Query: 530 STAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGG-----QEEKQKFNSKTSEIDNELSQ 694
S AFIGPIY CN+ R+QADTING DGK G ++ KQKFNSK SEIDNEL Q
Sbjct: 524 SKAFIGPIYKPPEEKKCNDGRNQADTINGRDGKNGRDGKRKQNKQKFNSKKSEIDNELFQ 583
Query: 695 FYKEIEELENEK-DSESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFD 871
FYKEIEELENEK DSESSCKE EPS++QLI YYQ NN++LK EEEKKK LSN Q H
Sbjct: 584 FYKEIEELENEKDDSESSCKEPEPSEKQLIAYYQNPNNDLLKSEEEKKKYLSNGLQPHCG 643
Query: 872 YQQCDGNEPGEYPCNGQVIPTFCDNSFYSFMPEWQVMHSFIVPQDPCVPSFYCQLNNQRF 1051
YQQ GNEPG+YPCNGQ+IPTFCD+SF SF PEWQ M SF+VPQDP +PSF LN +RF
Sbjct: 644 YQQWVGNEPGKYPCNGQMIPTFCDDSFTSFRPEWQAMDSFVVPQDPHLPSFNYHLNIERF 703
Query: 1052 SVPPNPPS-IFHTQDGFPMHRG 1114
SVPPNPPS IFH+QD F M G
Sbjct: 704 SVPPNPPSNIFHSQDDFEMQNG 725
Score = 25.8 bits (55), Expect(2) = e-121
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 3 LAYGGAACCSSPEGRVFS 56
LAYG AAC S+PE FS
Sbjct: 360 LAYGVAACFSAPEVPAFS 377
>ref|XP_002691802.1| PREDICTED: NEDD4 binding protein 2-like 2 [Bos taurus].
Length = 1290
Score = 431 bits (1107), Expect(2) = e-121
Identities = 219/322 (68%), Positives = 247/322 (76%), Gaps = 7/322 (2%)
Frame = +2
Query: 170 KMSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPI 349
KM Y E+ KSMG EEL EPC KKLKSTEEAYVFP+HG+ NF+R +EKTGS PV I
Sbjct: 79 KMPYGEVETKSMGREEELLSEPCSKKLKSTEEAYVFPYHGSGNFYRKQEKTGSDWTPVTI 138
Query: 350 IDSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYST 529
+ RG S+ QEDKT+TTD+LKP HD MP DRP+V ES DSQ++QD P LVS DD+IYST
Sbjct: 139 TNVRGHSYLQEDKTQTTDLLKPEHDGMPSDRPDVIESVDSQVVQDIHPPLVSTDDEIYST 198
Query: 530 STAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGG-----QEEKQKFNSKTSEIDNELSQ 694
S AFIGPIY CN+ R+QADTING DGK G ++ KQKFNSK SEIDNEL Q
Sbjct: 199 SKAFIGPIYKPPEEKKCNDGRNQADTINGRDGKNGRDGKRKQNKQKFNSKKSEIDNELFQ 258
Query: 695 FYKEIEELENEK-DSESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFD 871
FYKEIEELENEK DSESSCKE EPS++QLI YYQ NN++LK EEEKKK LSN Q H
Sbjct: 259 FYKEIEELENEKDDSESSCKEPEPSEKQLIAYYQNPNNDLLKSEEEKKKYLSNGLQPHCG 318
Query: 872 YQQCDGNEPGEYPCNGQVIPTFCDNSFYSFMPEWQVMHSFIVPQDPCVPSFYCQLNNQRF 1051
YQQ GNEPG+YPCNGQ+IPTFCD+SF SF PEWQ M SF+VPQDP +PSF LN +RF
Sbjct: 319 YQQWVGNEPGKYPCNGQMIPTFCDDSFTSFRPEWQAMDSFVVPQDPHLPSFNYHLNIERF 378
Query: 1052 SVPPNPPS-IFHTQDGFPMHRG 1114
SVPPNPPS IFH+QD F M G
Sbjct: 379 SVPPNPPSNIFHSQDDFEMQNG 400
Score = 25.8 bits (55), Expect(2) = e-121
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 3 LAYGGAACCSSPEGRVFS 56
LAYG AAC S+PE FS
Sbjct: 35 LAYGVAACFSAPEVPAFS 52
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,445,676
Number of extensions: 975507
Number of successful extensions: 3292
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3271
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008017
(1114 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534508.2| PREDICTED: similar to CG7139-PA, isoform A [Can... 385 e-107
>ref|XP_534508.2| PREDICTED: similar to CG7139-PA, isoform A [Canis familiaris].
Length = 1204
Score = 385 bits (988), Expect = e-107
Identities = 202/317 (63%), Positives = 230/317 (72%), Gaps = 3/317 (0%)
Frame = +2
Query: 173 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 352
M Y EI AKS+GHGEE+T EPCYKKLKS EE YVF H G+ANF RI+EKTGS VPV +
Sbjct: 1 MPYGEIEAKSLGHGEEITGEPCYKKLKSAEETYVFSHRGSANFLRIQEKTGSDWVPVTTV 60
Query: 353 DSRGRSHPQEDKTRTTDVLKPVHDEM-PGDRPNVTESTDSQILQDTRPALVSKDDDIYST 529
D RG + Q+DKT+ TD LKPVH+EM R +V ES D PALVS DD+IYST
Sbjct: 61 DVRGHIYAQKDKTKATDSLKPVHEEMCSNSRSDVIESIDPG------PALVSTDDEIYST 114
Query: 530 STAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEI 709
S AFIGPIY CNE+ + + T +GIDGKG +E+KQKFNSK SE+DNEL QFYKEI
Sbjct: 115 SKAFIGPIYKPPEKKKCNERGNHSVTSSGIDGKGRREQKQKFNSKVSELDNELFQFYKEI 174
Query: 710 EELENEKDS-ESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFDYQQCD 886
EELENEKD E S E EPS+E+L+ Y Q HNN++LK EE K++D SN QSH YQQ
Sbjct: 175 EELENEKDDLEGSYNEPEPSEEKLVTYCQDHNNDLLKSEEGKERDNSNVLQSHCGYQQHV 234
Query: 887 GNEPGEYPCNGQVIPTFCDNSFYSFMPEWQVMHSFIVPQDPCVPSFYCQLNNQRFSVPPN 1066
GNEPG+YP NGQVIPTFCD+SF SF PEWQ +HSFIVP P PSF LN QRFS PPN
Sbjct: 235 GNEPGKYPYNGQVIPTFCDDSFTSFRPEWQSVHSFIVPHGPPPPSFNYHLNIQRFSAPPN 294
Query: 1067 PPS-IFHTQDGFPMHRG 1114
PPS IFH QDGF G
Sbjct: 295 PPSNIFHVQDGFQHQNG 311
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,273,692
Number of extensions: 1013700
Number of successful extensions: 3756
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3731
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008017
(1114 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924666.1| PREDICTED: NEDD4-binding protein 2-like 2-li... 626 e-180
>ref|XP_001924666.1| PREDICTED: NEDD4-binding protein 2-like 2-like [Sus scrofa].
Length = 581
Score = 626 bits (1615), Expect = e-180
Identities = 299/314 (95%), Positives = 300/314 (95%)
Frame = +2
Query: 173 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 352
MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII
Sbjct: 1 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 60
Query: 353 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 532
DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS
Sbjct: 61 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 120
Query: 533 TAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 712
TAFIGPIY CNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE
Sbjct: 121 TAFIGPIYKPPKKKKCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 180
Query: 713 ELENEKDSESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFDYQQCDGN 892
ELENEKDSESSCKELEPSKEQLIPYYQGHNNEVLKFEE+KKKDLSNSPQSHFDYQQCDGN
Sbjct: 181 ELENEKDSESSCKELEPSKEQLIPYYQGHNNEVLKFEEKKKKDLSNSPQSHFDYQQCDGN 240
Query: 893 EPGEYPCNGQVIPTFCDNSFYSFMPEWQVMHSFIVPQDPCVPSFYCQLNNQRFSVPPNPP 1072
EPGEYPCNGQVIPTFCDNSF SFMPEWQ MHSFIVPQDPCVPSF C LN QRFSVPPNPP
Sbjct: 241 EPGEYPCNGQVIPTFCDNSFTSFMPEWQSMHSFIVPQDPCVPSFNCHLNIQRFSVPPNPP 300
Query: 1073 SIFHTQDGFPMHRG 1114
SIFHTQDGF M RG
Sbjct: 301 SIFHTQDGFQMQRG 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,015,090
Number of extensions: 619913
Number of successful extensions: 2073
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2055
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008017
(1114 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958757.2| NEDD4-binding protein 2-like 2 [Mus musculus]. 298 7e-81
>ref|NP_958757.2| NEDD4-binding protein 2-like 2 [Mus musculus].
Length = 575
Score = 298 bits (762), Expect = 7e-81
Identities = 166/316 (52%), Positives = 207/316 (65%), Gaps = 2/316 (0%)
Frame = +2
Query: 173 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 352
M Y E+ AK +G G+E T EPCYKKLKS + V P G + HRI+EK ++RV V I
Sbjct: 1 MPYSEVEAKFLGPGKEQTREPCYKKLKSAADDGVSPLRGGPDIHRIQEKPRNNRVAVATI 60
Query: 353 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 532
+ R R PQEDKT +TDVLKP+H EMPGD+ +ES S LQD +P+ ++KDD+IYSTS
Sbjct: 61 NFRRRVCPQEDKT-STDVLKPLHKEMPGDKLGGSESIGSPALQDGKPSPLAKDDEIYSTS 119
Query: 533 TAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 712
AFIGPIY C E++ + DT + ID K QEEKQK NSK E+D ELSQFYKEIE
Sbjct: 120 KAFIGPIYKPPEKKKCRERKSETDTFSSIDSKRRQEEKQKSNSKKLEMDTELSQFYKEIE 179
Query: 713 ELENEKD-SESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQSHFDYQQCDG 889
ELENE + S+ SC E EPS+E +I Y N LK EEE KDLS+ QSH YQ+
Sbjct: 180 ELENENEASQGSCTEPEPSEEPIISYDWACN--TLKSEEE-NKDLSDVLQSHCGYQEYLE 236
Query: 890 NEPGEYPCNGQVIPTFCDNSFYSFMPEWQVMHSFIVPQDPCVPSFYCQLNNQRFSVPPNP 1069
+EP +YPC+ Q++P FC+ SF SF PEWQ MH F++P DP S + N QRF P +P
Sbjct: 237 DEP-DYPCDEQLMPAFCETSFPSFRPEWQSMHPFVIPHDPL--SSFNYFNFQRFGTPLHP 293
Query: 1070 -PSIFHTQDGFPMHRG 1114
P +FH +D M G
Sbjct: 294 SPDVFHGRDDSQMQNG 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,961,896
Number of extensions: 859509
Number of successful extensions: 2746
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2684
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008017
(1114 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055702.1| NEDD4-binding protein 2-like 2 isoform 2 [Homo ... 391 e-109
>ref|NP_055702.1| NEDD4-binding protein 2-like 2 isoform 2 [Homo sapiens].
Length = 583
Score = 391 bits (1004), Expect = e-109
Identities = 202/317 (63%), Positives = 239/317 (75%), Gaps = 3/317 (0%)
Frame = +2
Query: 173 MSYDEIGAKSMGHGEELTIEPCYKKLKSTEEAYVFPHHGNANFHRIKEKTGSHRVPVPII 352
MSY EI K +G EE+T EP KKLKST E+YVF +H NA+FHRI+EKTG+ VPV II
Sbjct: 1 MSYGEIEGKFLGPREEVTSEPRCKKLKSTTESYVFHNHSNADFHRIQEKTGNDWVPVTII 60
Query: 353 DSRGRSHPQEDKTRTTDVLKPVHDEMPGDRPNVTESTDSQILQDTRPALVSKDDDIYSTS 532
D RG S+ QE+K +TTD+ +P+HDEMPG+RP+V ES DSQ+LQ+ RP LVS DD+IYSTS
Sbjct: 61 DVRGHSYLQENKIKTTDLHRPLHDEMPGNRPDVIESIDSQVLQEARPPLVSADDEIYSTS 120
Query: 533 TAFIGPIYXXXXXXXCNEKRDQADTINGIDGKGGQEEKQKFNSKTSEIDNELSQFYKEIE 712
AFIGPIY NE R++A +NGI+ +GGQ+EKQKFNS+ SEIDNEL QFYKEIE
Sbjct: 121 KAFIGPIYKPPEKKKRNEGRNEAHVLNGINDRGGQKEKQKFNSEKSEIDNELFQFYKEIE 180
Query: 713 ELENEKDS-ESSCKELEPSKEQLIPYYQGHNNEVLKFEEEKKKDLSNSPQ-SHFDYQQCD 886
ELE EKD E+SCKE EPS+EQ +P+Y+GHNN +LK +EE KKDLSN SH DYQQ
Sbjct: 181 ELEKEKDGFENSCKESEPSQEQFVPFYEGHNNGLLKPDEE-KKDLSNKAMPSHCDYQQNL 239
Query: 887 GNEPGEYPCNGQVIPTFCDNSFYSFMPEWQVMHSFIVPQDPCVPSFYCQLNNQRFSVPPN 1066
GNEP +YPCNGQVIPTFCD SF SF PEWQ ++ FIVP P +PS LN QRFS PPN
Sbjct: 240 GNEPDKYPCNGQVIPTFCDTSFTSFRPEWQSVYPFIVPYGPPLPSLNYHLNIQRFSGPPN 299
Query: 1067 PPS-IFHTQDGFPMHRG 1114
PPS IF QD + G
Sbjct: 300 PPSNIFQAQDDSQIQNG 316
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,582,153
Number of extensions: 1004598
Number of successful extensions: 3470
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3448
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008017
(1114 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 1740 0.0
>Sscrofa_Chr11
|| Length = 87690581
Score = 1740 bits (878), Expect = 0.0
Identities = 930/945 (98%), Gaps = 2/945 (0%)
Strand = Plus / Plus
Query: 171 agatgtcttatgatgaaattggagctaaatccatgggacatggggaagaactaacaattg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8717863 agatgtcttatgatgaaattggagctaaatccatgggacatggggaagaactaacaattg 8717922
Query: 231 aaccatgctataagaaactgaagtctactgaagaggcgtatgttttcccccatcatggaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8717923 aaccatgctataagaaactgaagtctactgaagaggcgtatgttttcccccatcatggaa 8717982
Query: 291 acgctaattttcacagaatcaaagagaaaactggaagtcatcgggtccctgtgcccatca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8717983 acgctaattttcacagaatcaaagagaaaactggaagtcatcgggtccctgtgcccatca 8718042
Query: 351 ttgatagcagaggacgtagtcatcctcaggaggacaaaaccagaactacagacgtgctga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718043 ttgatagcagaggacgtagtcatcctcaggaggacaaaaccagaactacagacgtgctga 8718102
Query: 411 aacctgtgcatgatgagatgcctggtgatagaccaaacgtcaccgagtctactgattcac 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718103 aacctgtgcatgatgagatgcctggtgatagaccaaacgtcaccgagtctactgattcac 8718162
Query: 471 agattttacaggatacacgccctgcattggtatccaaagatgatgatatatatagtacaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718163 agattttacaggatacacgccctgcattggtatccaaagatgatgatatatatagtacaa 8718222
Query: 531 gtacagcatttataggacccatttacaaaccccctaagaaaaagaaatgtaatgaaaaga 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8718223 gtacagcatttataggacccatttacaaaccccctaagaaaaagaaatgtaatgaaaaaa 8718282
Query: 591 gggatcaagcagacactatcaatggtatagatggcaaaggaggacaagaagagaaacaga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718283 gggatcaagcagacactatcaatggtatagatggcaaaggaggacaagaagagaaacaga 8718342
Query: 651 aatttaactccaaaacatcagagatcgacaatgaattatctcagttttacaaagaaatcg 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718343 aatttaactccaaaacatcagagatcgacaatgaattatctcagttttacaaagaaatcg 8718402
Query: 711 aagagcttgaaaatgaaaaagattcagaaagcagctgtaaggagcttgaaccctctaagg 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718403 aagagcttgaaaatgaaaaagattcagaaagcagctgtaaggagcttgaaccctctaagg 8718462
Query: 771 aacaacttattccatattatcagggtcataataatgaggtattaaaatttgaagaagaaa 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8718463 aacaacttattccatattatcagggtcataataatgaggtattaaaatttgaagaaaaaa 8718522
Query: 831 agaaaaaggatcttagtaatagtcctcagtcacattttgattatcaacagtgtgatggga 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718523 agaaaaaggatcttagtaatagtcctcagtcacattttgattatcaacagtgtgatggga 8718582
Query: 891 atgagccaggcgaatatccttgtaatggacaagtaatacctacattttgtgataattcgt 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8718583 atgagccaggcgaatatccttgtaatggacaagtaatacctacattttgtgataattcgt 8718642
Query: 951 tttattccttcatgcctgaatggcaagtc-atgcattcttttatagttccccaagatcct 1009
|| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 8718643 ttacttccttcatgcctgaatggc-agtcaatgcattcttttatagttccccaagatcct 8718701
Query: 1010 tgtgttcccagtttttactgtcaactaaataatcaaagattcagtgttccaccaaatcca 1069
||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 8718702 tgtgttcccagttttaactgtcacttaaatattcaaagattcagtgttccaccaaatcca 8718761
Query: 1070 ccnagtattttccacacccaggatggctttccaatgcaccgtgga 1114
|| ||||||||||||||||| |||||||||| ||||| ||||||
Sbjct: 8718762 ccaagtattttccacacccaagatggctttcagatgcaacgtgga 8718806
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 1 atcttgcttacggaggtgcggcttgttgctcatctcctgagggccgggtttttagtcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8713939 atcttgcttacggaggtgcggcttgttgctcatctcctgagggccgggtttttagtcgct 8713998
Query: 61 ccgggtttcaggtttgggccgtctccccgcgcttctttcacctgagatgttcgtgtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8713999 ccgggtttcaggtttgggccgtctccccgcgcttctttcacctgagatgttcgtgtgttt 8714058
Query: 121 ctagaagaagacttcattgggaagtaaaggtcaatgcagagctgtgtgtaag 172
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8714059 ctagaagaagacttcattgggaagtaaaggtcaatgcagagctgtgtgtaag 8714110
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,493,739
Number of extensions: 440
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 2
Length of query: 1114
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1093
Effective length of database: 2,808,413,156
Effective search space: 3069595579508
Effective search space used: 3069595579508
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)