Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008018
(1324 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069956.1| leucine carboxyl methyltransferase 1 [Bos ta... 551 e-157
Alignment gi|XP_002696850.1| PREDICTED: leucine carboxyl methyltransferas... 155 1e-37
Alignment gi|XP_001789733.1| PREDICTED: leucine carboxyl methyltransferas... 155 1e-37
>ref|NP_001069956.1| leucine carboxyl methyltransferase 1 [Bos taurus].
Length = 332
Score = 551 bits (1421), Expect = e-157
Identities = 276/333 (82%), Positives = 284/333 (85%)
Frame = +1
Query: 211 MATSLRRPSFTGCSSSPPDADDEGVRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKER 390
MA SLRRPSFT CSS P D DDEGVRGTCEDAS+CKRFAVSIGYWQDPYI HLVRLSKER
Sbjct: 1 MAASLRRPSFTTCSS-PTDTDDEGVRGTCEDASICKRFAVSIGYWQDPYIQHLVRLSKER 59
Query: 391 KAPEINRGYFARVHGVSQLIKAFLRKTGCNCQILNLGAGMDTTFWRLKDEDLLPSKYFEI 570
KAPEINRGYFARVHGVSQL KAFLRKT CNCQILNLGAGMDTTFW LKDEDLLP KYFEI
Sbjct: 60 KAPEINRGYFARVHGVSQLTKAFLRKTECNCQILNLGAGMDTTFWMLKDEDLLPRKYFEI 119
Query: 571 DFPMIVTRXXXXXXXXXXXXXXXXXXHSEDTLQMDGHTLDSTRYAIIGADLRDIPELEEK 750
DFPMIVTR HSEDTLQMDGH LDSTRYAIIGADLRDI +LEEK
Sbjct: 120 DFPMIVTRKLHSIKLKPLLSKPILDLHSEDTLQMDGHMLDSTRYAIIGADLRDIADLEEK 179
Query: 751 LKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIM 930
LKKCNM+TQLPTLL+AECVLVYMTPEQSANLLKWAANSFE AMFINYEQVNM DRFGQIM
Sbjct: 180 LKKCNMSTQLPTLLIAECVLVYMTPEQSANLLKWAANSFEAAMFINYEQVNMGDRFGQIM 239
Query: 931 IENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSKLPRAEVSRIXXXXX 1110
IENLRRRQCDLAGVETCKSLESQ+ERLLSSGWESASA+DMME+YS+LPRAEV RI
Sbjct: 240 IENLRRRQCDLAGVETCKSLESQRERLLSSGWESASAIDMMEVYSRLPRAEVIRIEALEF 299
Query: 1111 XXXXXXXXXXMQHYCLCWATKGGSNLGLKEITY 1209
MQHYCLCWATKGGS LGLKEITY
Sbjct: 300 LDEMELLEQLMQHYCLCWATKGGSELGLKEITY 332
>ref|XP_002696850.1| PREDICTED: leucine carboxyl methyltransferase 2 (predicted)-like [Bos
taurus].
Length = 685
Score = 155 bits (391), Expect = 1e-37
Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 9/311 (2%)
Frame = +1
Query: 277 EGVRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKERKAPEINRGYFARVHGVSQLIKA 456
E V+ T + ++L K + GY D + LV R+AP I+RGY+ R V ++A
Sbjct: 11 EAVQSTNDSSALSKSSLAARGYVHDAFAALLVP-GTARRAPLIHRGYYVRARAVRHCVRA 69
Query: 457 FLRKTGC-----NCQILNLGAGMDTTFWRLKDED-LLPSKYFEIDFPMIVTRXXXXXXXX 618
F+ +T QIL+LGAG D+ ++RLK L + +E+DFP + R
Sbjct: 70 FIEQTCAAPGTPRAQILSLGAGSDSLYFRLKTAGHLAGAAVWEVDFPDVAERKAQRIRDT 129
Query: 619 XXXXXXXXXXHSEDTLQMDGHTL--DSTRYAIIGADLRDIPELEEKLKKCNMNTQLPTLL 792
S D G TL +S+ Y I+G DLR + L++ L ++ PTLL
Sbjct: 130 PDLCALTGPFQSGD----HGSTLCFESSDYRILGLDLRQLQRLDQALAAAGLDAAFPTLL 185
Query: 793 VAECVLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIMIENLRRRQCDLAGV 972
+AE VL Y+ P+ +A L+ WAA F A+F+ YEQ+ D FG+ M ++ R L G+
Sbjct: 186 LAEAVLTYLEPDDAAALIAWAAQRFSNAIFVVYEQMRPQDAFGEFMQQHFRHLNSPLHGL 245
Query: 973 ETCKSLESQKERLLSSGWESASAVDMMELY-SKLPRAEVSRIXXXXXXXXXXXXXXXMQH 1149
+ E+Q++R L +GW + A+D+ E Y LP E R+ H
Sbjct: 246 DRFPDAEAQQQRFLQAGWTACRAMDLNEFYRCFLPAEERRRMENLEPFDEFEEWHLKCAH 305
Query: 1150 YCLCWATKGGS 1182
Y + A++G S
Sbjct: 306 YFILAASRGDS 316
>ref|XP_001789733.1| PREDICTED: leucine carboxyl methyltransferase 2 (predicted)-like [Bos
taurus].
Length = 685
Score = 155 bits (391), Expect = 1e-37
Identities = 100/311 (32%), Positives = 153/311 (49%), Gaps = 9/311 (2%)
Frame = +1
Query: 277 EGVRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKERKAPEINRGYFARVHGVSQLIKA 456
E V+ T + ++L K + GY D + LV R+AP I+RGY+ R V ++A
Sbjct: 11 EAVQSTNDSSALSKSSLAARGYVHDAFAALLVP-GTARRAPLIHRGYYVRARAVRHCVRA 69
Query: 457 FLRKTGC-----NCQILNLGAGMDTTFWRLKDED-LLPSKYFEIDFPMIVTRXXXXXXXX 618
F+ +T QIL+LGAG D+ ++RLK L + +E+DFP + R
Sbjct: 70 FIEQTCAAPGTPRAQILSLGAGSDSLYFRLKTAGHLAGAAVWEVDFPDVAERKAQRIRDT 129
Query: 619 XXXXXXXXXXHSEDTLQMDGHTL--DSTRYAIIGADLRDIPELEEKLKKCNMNTQLPTLL 792
S D G TL +S+ Y I+G DLR + L++ L ++ PTLL
Sbjct: 130 PDLCALTGPFQSGD----HGSTLCFESSDYRILGLDLRQLQRLDQALAAAGLDAAFPTLL 185
Query: 793 VAECVLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIMIENLRRRQCDLAGV 972
+AE VL Y+ P+ +A L+ WAA F A+F+ YEQ+ D FG+ M ++ R L G+
Sbjct: 186 LAEAVLTYLEPDDAAALIAWAAQRFSNAIFVVYEQMRPQDAFGEFMQQHFRHLNSPLHGL 245
Query: 973 ETCKSLESQKERLLSSGWESASAVDMMELY-SKLPRAEVSRIXXXXXXXXXXXXXXXMQH 1149
+ E+Q++R L +GW + A+D+ E Y LP E R+ H
Sbjct: 246 DRFPDAEAQQQRFLQAGWTACRAMDLNEFYRCFLPAEERRRMENLEPFDEFEEWHLKCAH 305
Query: 1150 YCLCWATKGGS 1182
Y + A++G S
Sbjct: 306 YFILAASRGDS 316
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,967,125
Number of extensions: 1215954
Number of successful extensions: 3871
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3859
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 336
Effective length of database: 14,207,134
Effective search space: 4773597024
Effective search space used: 4773597024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008018
(1324 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850461.1| PREDICTED: similar to Leucine carboxyl methyltr... 549 e-156
Alignment gi|XP_544648.1| PREDICTED: similar to leucine carboxyl methyltr... 157 2e-38
>ref|XP_850461.1| PREDICTED: similar to Leucine carboxyl methyltransferase 1
(Protein-leucine O-methyltransferase) [Canis familiaris].
Length = 545
Score = 549 bits (1414), Expect = e-156
Identities = 267/347 (76%), Positives = 289/347 (83%)
Frame = +1
Query: 169 PCPG*TQSSAPSTPMATSLRRPSFTGCSSSPPDADDEGVRGTCEDASLCKRFAVSIGYWQ 348
PCP + STPMAT+LR PSF SS+ D DDEGVRGTCEDAS+CKRFAVSIGYW
Sbjct: 113 PCPWRARQPGTSTPMATNLRTPSFASSSSTSTDTDDEGVRGTCEDASMCKRFAVSIGYWH 172
Query: 349 DPYIPHLVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTGCNCQILNLGAGMDTTFWR 528
DPYI H VRLSKERKAPEINRGYFARVHGV QLIKAFLRKT C CQILNLGAGMDTTFWR
Sbjct: 173 DPYIQHFVRLSKERKAPEINRGYFARVHGVDQLIKAFLRKTECQCQILNLGAGMDTTFWR 232
Query: 529 LKDEDLLPSKYFEIDFPMIVTRXXXXXXXXXXXXXXXXXXHSEDTLQMDGHTLDSTRYAI 708
LKDEDLLPSKYFE+DFPMIVTR H++DTLQ+DGH LDS RYAI
Sbjct: 233 LKDEDLLPSKYFEVDFPMIVTRKLHSIKVKPFLSQPIIELHADDTLQIDGHFLDSKRYAI 292
Query: 709 IGADLRDIPELEEKLKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFIN 888
+GADLRD+PELEEKLKKCN+N QLPTLL+ ECVLVYMTPEQSANLLKWAANSFETAMFIN
Sbjct: 293 VGADLRDLPELEEKLKKCNINPQLPTLLITECVLVYMTPEQSANLLKWAANSFETAMFIN 352
Query: 889 YEQVNMDDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSK 1068
YEQVNMDDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLS+GWE+ASAVDMME+YSK
Sbjct: 353 YEQVNMDDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMEVYSK 412
Query: 1069 LPRAEVSRIXXXXXXXXXXXXXXXMQHYCLCWATKGGSNLGLKEITY 1209
LP+AEVSRI MQHYCLCWATKGG+ LG+++++Y
Sbjct: 413 LPQAEVSRIESLEFLDEMELLEQLMQHYCLCWATKGGNELGMQKMSY 459
>ref|XP_544648.1| PREDICTED: similar to leucine carboxyl methyltransferase 2 [Canis
familiaris].
Length = 687
Score = 157 bits (397), Expect = 2e-38
Identities = 97/305 (31%), Positives = 148/305 (48%), Gaps = 7/305 (2%)
Frame = +1
Query: 283 VRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKERKAPEINRGYFARVHGVSQLIKAFL 462
V+ T + ++L K + GY QDP+ LV R+AP I+RGY+ R V ++AFL
Sbjct: 13 VQSTNDSSALSKSSLAAHGYVQDPFAALLVP-GTARRAPLIHRGYYVRARAVGHCVRAFL 71
Query: 463 RKTGC-----NCQILNLGAGMDTTFWRLKDEDLLP-SKYFEIDFPMIVTRXXXXXXXXXX 624
+T Q+++LGAG D+ ++RLK E L + +E+DFP + R
Sbjct: 72 ERTCAAPGAPRAQVVSLGAGSDSLYFRLKTEGRLTGAAVWEVDFPDVARRKAERIQDTPE 131
Query: 625 XXXXXXXXHSEDTLQMDGHTLDSTRYAIIGADLRDIPELEEKLKKCNMNTQLPTLLVAEC 804
S D + + Y ++G DLR +P L++ L ++ PTLL+AE
Sbjct: 132 LCELTGPFQSRDPASV--LCFEGADYRLLGLDLRQLPRLDQALAAAGLDAAAPTLLLAEA 189
Query: 805 VLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIMIENLRRRQCDLAGVETCK 984
VL Y+ P +A L+ WAA F A+F+ YEQ+ D FGQ M ++ R+ L G++
Sbjct: 190 VLTYLEPNDAAALIAWAAQRFPDALFVIYEQMRPHDAFGQFMQQHFRQLSSPLHGLDRFP 249
Query: 985 SLESQKERLLSSGWESASAVDMMELY-SKLPRAEVSRIXXXXXXXXXXXXXXXMQHYCLC 1161
+E+Q+ R L +GW A+DM E Y L E R+ HY +
Sbjct: 250 DVEAQQHRFLQAGWTDCRAMDMNEFYRCFLSSEECQRVENLEPFDEFEEWHLKCAHYFIL 309
Query: 1162 WATKG 1176
A+ G
Sbjct: 310 AASTG 314
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,105,643
Number of extensions: 1251467
Number of successful extensions: 3657
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3650
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 335
Effective length of database: 15,340,888
Effective search space: 5139197480
Effective search space used: 5139197480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008018
(1324 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124581.2| PREDICTED: leucine carboxyl methyltransferas... 380 e-105
Alignment gi|XP_003357702.1| PREDICTED: leucine carboxyl methyltransferas... 226 2e-59
Alignment gi|XP_003353428.1| PREDICTED: leucine carboxyl methyltransferas... 154 8e-38
Alignment gi|XP_003354617.1| PREDICTED: leucine carboxyl methyltransferas... 80 3e-15
>ref|XP_003124581.2| PREDICTED: leucine carboxyl methyltransferase 1-like isoform 1 [Sus
scrofa].
Length = 303
Score = 380 bits (975), Expect = e-105
Identities = 193/226 (85%), Positives = 193/226 (85%)
Frame = +1
Query: 532 KDEDLLPSKYFEIDFPMIVTRXXXXXXXXXXXXXXXXXXHSEDTLQMDGHTLDSTRYAII 711
KDEDLLPSKYFEIDFPMIVTR HSEDTLQMDGHTLDSTRYAII
Sbjct: 78 KDEDLLPSKYFEIDFPMIVTRKLHSIKLKPLLSKPILDLHSEDTLQMDGHTLDSTRYAII 137
Query: 712 GADLRDIPELEEKLKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFINY 891
GADLRDIPELEEKLKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFINY
Sbjct: 138 GADLRDIPELEEKLKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFINY 197
Query: 892 EQVNMDDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSKL 1071
EQVNMDDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSKL
Sbjct: 198 EQVNMDDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSKL 257
Query: 1072 PRAEVSRIXXXXXXXXXXXXXXXMQHYCLCWATKGGSNLGLKEITY 1209
PRAEVSRI MQHYCLCWATKGGSNLGLKEITY
Sbjct: 258 PRAEVSRIESLEFLDEMELLEQLMQHYCLCWATKGGSNLGLKEITY 303
>ref|XP_003357702.1| PREDICTED: leucine carboxyl methyltransferase 1-like [Sus scrofa].
Length = 134
Score = 226 bits (577), Expect = 2e-59
Identities = 110/128 (85%), Positives = 114/128 (89%)
Frame = +1
Query: 211 MATSLRRPSFTGCSSSPPDADDEGVRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKER 390
MATSLRRPSFT CSSS DADDEGVRG CEDASLCKRFAVSIGYWQDP IPHLVRLSK R
Sbjct: 1 MATSLRRPSFTACSSSLLDADDEGVRGPCEDASLCKRFAVSIGYWQDPCIPHLVRLSKAR 60
Query: 391 KAPEINRGYFARVHGVSQLIKAFLRKTGCNCQILNLGAGMDTTFWRLKDEDLLPSKYFEI 570
KAPEINRGYFA VH VSQLIK FLRKTGCNCQILNLGAGMDTTFWRLKDEDLLPS +++
Sbjct: 61 KAPEINRGYFAHVHSVSQLIKVFLRKTGCNCQILNLGAGMDTTFWRLKDEDLLPSTSWKV 120
Query: 571 DFPMIVTR 594
D I+TR
Sbjct: 121 DVAGIITR 128
>ref|XP_003353428.1| PREDICTED: leucine carboxyl methyltransferase 2 [Sus scrofa].
Length = 685
Score = 154 bits (390), Expect = 8e-38
Identities = 101/307 (32%), Positives = 151/307 (49%), Gaps = 9/307 (2%)
Frame = +1
Query: 283 VRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKERKAPEINRGYFARVHGVSQLIKAFL 462
V+ T + ++L K + GY D + LV S R+AP I+RGY+ R + + AFL
Sbjct: 13 VQSTNDSSALSKSSLAARGYVHDTFAALLVPASV-RRAPLIHRGYYVRARAMRHCVCAFL 71
Query: 463 RKTGC-----NCQILNLGAGMDTTFWRLKDEDLLP-SKYFEIDFPMIVTRXXXXXXXXXX 624
T + QIL+LGAG D+ ++RLK LP + +E+DFP + R
Sbjct: 72 EGTRAALGAPHIQILSLGAGSDSLYFRLKAAGRLPGAAVWEVDFPDVARRKADRIRDTPE 131
Query: 625 XXXXXXXXHSEDTLQMDGHTL--DSTRYAIIGADLRDIPELEEKLKKCNMNTQLPTLLVA 798
D G TL +S+ Y I+G DLR + L++ L ++ PTLL+A
Sbjct: 132 LCALTGPFRRGDA----GSTLCFESSDYRILGLDLRQVQRLDQALAAAGLDAAAPTLLLA 187
Query: 799 ECVLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIMIENLRRRQCDLAGVET 978
E VL Y+ P +A L+ WAA F A+F+ YEQ+ D FGQ M ++ R+ L G++
Sbjct: 188 EAVLTYLEPNNAAALIAWAAQCFSDALFVVYEQMRPHDAFGQFMQQHFRQLNSPLHGLDR 247
Query: 979 CKSLESQKERLLSSGWESASAVDMMELYSK-LPRAEVSRIXXXXXXXXXXXXXXXMQHYC 1155
E+Q++R L +GW + A+DM E Y LP E R+ HY
Sbjct: 248 FPDAEAQQQRFLQAGWTACRALDMNEFYRHFLPAEERRRVENLEPFDEFEEWHLKCSHYF 307
Query: 1156 LCWATKG 1176
+ A++G
Sbjct: 308 ILAASRG 314
>ref|XP_003354617.1| PREDICTED: leucine carboxyl methyltransferase 1-like [Sus scrofa].
Length = 54
Score = 80.1 bits (196), Expect = 3e-15
Identities = 39/54 (72%), Positives = 39/54 (72%)
Frame = +1
Query: 1048 MMELYSKLPRAEVSRIXXXXXXXXXXXXXXXMQHYCLCWATKGGSNLGLKEITY 1209
MMELYSKLPRAEVSRI MQHYCLCWATKGGSNLGLKEITY
Sbjct: 1 MMELYSKLPRAEVSRIESLEFLDEMELLEQLMQHYCLCWATKGGSNLGLKEITY 54
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,250,808
Number of extensions: 779058
Number of successful extensions: 2463
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2454
Number of HSP's successfully gapped: 4
Length of query: 441
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,804,438
Effective search space: 2984704482
Effective search space used: 2984704482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008018
(1324 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079580.2| leucine carboxyl methyltransferase 1 [Mus muscu... 523 e-149
Alignment gi|NP_808514.2| leucine carboxyl methyltransferase 2 [Mus muscu... 158 1e-38
>ref|NP_079580.2| leucine carboxyl methyltransferase 1 [Mus musculus].
Length = 332
Score = 523 bits (1348), Expect = e-149
Identities = 262/333 (78%), Positives = 277/333 (83%)
Frame = +1
Query: 211 MATSLRRPSFTGCSSSPPDADDEGVRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKER 390
MA+S R SF+ CSSS D DDEGVRGTCEDASLCKRFAVSIGYW DPYI HLVR SKER
Sbjct: 1 MASSSRESSFSSCSSSC-DLDDEGVRGTCEDASLCKRFAVSIGYWHDPYIEHLVRQSKER 59
Query: 391 KAPEINRGYFARVHGVSQLIKAFLRKTGCNCQILNLGAGMDTTFWRLKDEDLLPSKYFEI 570
KAPEINRGYFARVHGVSQLIKAFLRKT C+CQILNLGAGMDTTFW+LKDE LLP+KYFE+
Sbjct: 60 KAPEINRGYFARVHGVSQLIKAFLRKTECHCQILNLGAGMDTTFWKLKDEGLLPNKYFEV 119
Query: 571 DFPMIVTRXXXXXXXXXXXXXXXXXXHSEDTLQMDGHTLDSTRYAIIGADLRDIPELEEK 750
DFPMIVTR H EDTLQMD H LDS RYAIIGADLRD+ ELEEK
Sbjct: 120 DFPMIVTRKLLTIKSKPLLFRPIMELHPEDTLQMDSHMLDSKRYAIIGADLRDLSELEEK 179
Query: 751 LKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIM 930
LKKCNMNTQLPTLL+ ECVLVYMTPEQSANLLKWAA+SFETAMFINYEQVNMDDRFGQIM
Sbjct: 180 LKKCNMNTQLPTLLITECVLVYMTPEQSANLLKWAASSFETAMFINYEQVNMDDRFGQIM 239
Query: 931 IENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSKLPRAEVSRIXXXXX 1110
IENLRRR CDLAGVETCKSLESQKERLL +GWE+ASAV+MMELYS LPRAEV+RI
Sbjct: 240 IENLRRRSCDLAGVETCKSLESQKERLLLNGWETASAVNMMELYSGLPRAEVNRIESLEF 299
Query: 1111 XXXXXXXXXXMQHYCLCWATKGGSNLGLKEITY 1209
M+HYCLCWAT+GG LGLKEITY
Sbjct: 300 LDEMELLEQLMRHYCLCWATRGGQELGLKEITY 332
>ref|NP_808514.2| leucine carboxyl methyltransferase 2 [Mus musculus].
Length = 686
Score = 158 bits (399), Expect = 1e-38
Identities = 100/305 (32%), Positives = 153/305 (50%), Gaps = 7/305 (2%)
Frame = +1
Query: 283 VRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKERKAPEINRGYFARVHGVSQLIKAFL 462
V+ T + +SL KR + GY +DP+ LV R+ P I+RGY+ R V ++AFL
Sbjct: 13 VQSTNDSSSLSKRSLAAHGYVRDPFAALLVP-GPVRRTPLIHRGYYVRARAVRHCVRAFL 71
Query: 463 RKTGC-----NCQILNLGAGMDTTFWRLKDEDLLP-SKYFEIDFPMIVTRXXXXXXXXXX 624
T QIL+LG+G D+ ++RLK LL + +E+DFP +
Sbjct: 72 ELTSALPSRTRAQILSLGSGSDSLYFRLKAAGLLARAAVWEVDFPDVSRLKAERIEETPE 131
Query: 625 XXXXXXXXHSEDTLQMDGHTLDSTRYAIIGADLRDIPELEEKLKKCNMNTQLPTLLVAEC 804
D+ +S Y I+GADLR++ L E L ++ PTLL+AE
Sbjct: 132 LRAQTGPFKIGDSAS--SLCFESADYRILGADLRELQRLGEALDGAGLDATSPTLLLAEA 189
Query: 805 VLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIMIENLRRRQCDLAGVETCK 984
VL Y+ P + L+ WAA F A+F+ YEQ+ D FGQIM+++ +R L G+E
Sbjct: 190 VLTYLEPSSATALIAWAAQRFPDALFVIYEQMQPGDAFGQIMLQHFQRLHSPLHGLELFP 249
Query: 985 SLESQKERLLSSGWESASAVDMMELYSKLPRAEV-SRIXXXXXXXXXXXXXXXMQHYCLC 1161
+++Q++R L +GW + SA+D+ E Y +L AE R+ HY +
Sbjct: 250 VVKAQRQRFLQAGWTACSALDLNEFYRRLLSAEERQRVETLEPFDEYEEWHLKCSHYFIL 309
Query: 1162 WATKG 1176
A++G
Sbjct: 310 AASRG 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,870,776
Number of extensions: 1040441
Number of successful extensions: 3111
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3107
Number of HSP's successfully gapped: 3
Length of query: 441
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 337
Effective length of database: 12,493,815
Effective search space: 4210415655
Effective search space used: 4210415655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008018
(1324 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057393.2| leucine carboxyl methyltransferase 1 isoform a ... 539 e-153
Alignment gi|NP_001027563.1| leucine carboxyl methyltransferase 1 isoform... 434 e-122
Alignment gi|NP_055608.2| leucine carboxyl methyltransferase 2 [Homo sapi... 166 4e-41
>ref|NP_057393.2| leucine carboxyl methyltransferase 1 isoform a [Homo sapiens].
Length = 334
Score = 539 bits (1388), Expect = e-153
Identities = 269/334 (80%), Positives = 282/334 (84%), Gaps = 1/334 (0%)
Frame = +1
Query: 211 MATSLRRPSFTGC-SSSPPDADDEGVRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKE 387
MAT R S T C S+S DADDEGVRGTCEDASLCKRFAVSIGYW DPYI H VRLSKE
Sbjct: 1 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE 60
Query: 388 RKAPEINRGYFARVHGVSQLIKAFLRKTGCNCQILNLGAGMDTTFWRLKDEDLLPSKYFE 567
RKAPEINRGYFARVHGVSQLIKAFLRKT C+CQI+NLGAGMDTTFWRLKDEDLLPSKYFE
Sbjct: 61 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE 120
Query: 568 IDFPMIVTRXXXXXXXXXXXXXXXXXXHSEDTLQMDGHTLDSTRYAIIGADLRDIPELEE 747
+DFPMIVTR HSEDTLQMDGH LDS RYA+IGADLRD+ ELEE
Sbjct: 121 VDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEE 180
Query: 748 KLKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQI 927
KLKKCNMNTQLPTLL+AECVLVYMTPEQSANLLKWAANSFE AMFINYEQVNM DRFGQI
Sbjct: 181 KLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI 240
Query: 928 MIENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSKLPRAEVSRIXXXX 1107
MIENLRRRQCDLAGVETCKSLESQKERLLS+GWE+ASAVDMMELY++LPRAEVSRI
Sbjct: 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE 300
Query: 1108 XXXXXXXXXXXMQHYCLCWATKGGSNLGLKEITY 1209
M+HYCLCWATKGG+ LGLKEITY
Sbjct: 301 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
>ref|NP_001027563.1| leucine carboxyl methyltransferase 1 isoform b [Homo sapiens].
Length = 279
Score = 434 bits (1116), Expect = e-122
Identities = 230/334 (68%), Positives = 242/334 (72%), Gaps = 1/334 (0%)
Frame = +1
Query: 211 MATSLRRPSFTGC-SSSPPDADDEGVRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKE 387
MAT R S T C S+S DADDEGVRGTCEDASLCKRFAVSIGYW DPYI H VRLSKE
Sbjct: 1 MATRQRESSITSCCSTSSCDADDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKE 60
Query: 388 RKAPEINRGYFARVHGVSQLIKAFLRKTGCNCQILNLGAGMDTTFWRLKDEDLLPSKYFE 567
RKAPEINRGYFARVHGVSQLIKAFLRKT C+CQI+NLGAGMDTTFWRLKDEDLLPSKYFE
Sbjct: 61 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFE 120
Query: 568 IDFPMIVTRXXXXXXXXXXXXXXXXXXHSEDTLQMDGHTLDSTRYAIIGADLRDIPELEE 747
+DFPMIVTR
Sbjct: 121 VDFPMIVTR--------------------------------------------------- 129
Query: 748 KLKKCNMNTQLPTLLVAECVLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQI 927
KL + T L +AECVLVYMTPEQSANLLKWAANSFE AMFINYEQVNM DRFGQI
Sbjct: 130 KLHSIKLPTLL----IAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQI 185
Query: 928 MIENLRRRQCDLAGVETCKSLESQKERLLSSGWESASAVDMMELYSKLPRAEVSRIXXXX 1107
MIENLRRRQCDLAGVETCKSLESQKERLLS+GWE+ASAVDMMELY++LPRAEVSRI
Sbjct: 186 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLE 245
Query: 1108 XXXXXXXXXXXMQHYCLCWATKGGSNLGLKEITY 1209
M+HYCLCWATKGG+ LGLKEITY
Sbjct: 246 FLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 279
>ref|NP_055608.2| leucine carboxyl methyltransferase 2 [Homo sapiens].
Length = 686
Score = 166 bits (420), Expect = 4e-41
Identities = 103/305 (33%), Positives = 151/305 (49%), Gaps = 7/305 (2%)
Frame = +1
Query: 283 VRGTCEDASLCKRFAVSIGYWQDPYIPHLVRLSKERKAPEINRGYFARVHGVSQLIKAFL 462
V+ T + ++L KR + GY QDP+ LV R+AP I+RGY+ R V ++AFL
Sbjct: 13 VQNTNDSSALSKRSLAARGYVQDPFAALLVP-GAARRAPLIHRGYYVRARAVRHCVRAFL 71
Query: 463 RKTGC-----NCQILNLGAGMDTTFWRLKDEDLLP-SKYFEIDFPMIVTRXXXXXXXXXX 624
+ G QIL+LGAG D+ ++RLK L + +E+DFP + R
Sbjct: 72 EQIGAPQAALRAQILSLGAGFDSLYFRLKTAGRLARAAVWEVDFPDVARRKAERIGETPE 131
Query: 625 XXXXXXXXHSEDTLQMDGHTLDSTRYAIIGADLRDIPELEEKLKKCNMNTQLPTLLVAEC 804
+ +S Y I+G DLR + +EE L ++ PTLL+AE
Sbjct: 132 LCALTGPFERGEPAS--ALCFESADYCILGLDLRQLQRVEEALGAAGLDAASPTLLLAEA 189
Query: 805 VLVYMTPEQSANLLKWAANSFETAMFINYEQVNMDDRFGQIMIENLRRRQCDLAGVETCK 984
VL Y+ PE +A L+ WAA F A+F+ YEQ+ D FGQ M+++ R+ L G+E
Sbjct: 190 VLTYLEPESAAALIAWAAQRFPNALFVVYEQMRPQDAFGQFMLQHFRQLNSPLHGLERFP 249
Query: 985 SLESQKERLLSSGWESASAVDMMELY-SKLPRAEVSRIXXXXXXXXXXXXXXXMQHYCLC 1161
+E+Q+ R L +GW + AVDM E Y LP E R+ HY +
Sbjct: 250 DVEAQRRRFLQAGWTACGAVDMNEFYHCFLPAEERRRVENIEPFDEFEEWHLKCAHYFIL 309
Query: 1162 WATKG 1176
A++G
Sbjct: 310 AASRG 314
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,162,792
Number of extensions: 1236174
Number of successful extensions: 3817
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3811
Number of HSP's successfully gapped: 4
Length of query: 441
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 335
Effective length of database: 14,802,980
Effective search space: 4958998300
Effective search space used: 4958998300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008018
(1324 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 626 e-177
Sscrofa_Chr07 357 1e-95
Sscrofa_Chr10 341 6e-91
Sscrofa_Chr14 125 7e-26
gb|GL893108.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 74 2e-10
gb|GL894595.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 68 1e-08
>Sscrofa_Chr03
|| Length = 144787322
Score = 626 bits (316), Expect = e-177
Identities = 319/320 (99%)
Strand = Plus / Minus
Query: 1 ttgtccaaggagcctgtcggacgaagacgccgagacgctggaaggttgctggcgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22002738 ttgtccaaggagcctgtcggacgaagacgccgagacgctggaaggttgctggcgcagctg 22002679
Query: 61 cggagggcggcgtcactgagccgcgccggcggcgccggttgcagacccgctcctctcgcc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 22002678 cggagggcggcgtcactgagccgcgccggcggagccggttgcagacccgctcctctcgcc 22002619
Query: 121 tgctttctccggggctcgcttcttcacccagggtccgtcgagccttttccatgtcccggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22002618 tgctttctccggggctcgcttcttcacccagggtccgtcgagccttttccatgtcccggg 22002559
Query: 181 tagacgcagtcctccgcaccctccacgcccatggccactagcctgaggaggccgtctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22002558 tagacgcagtcctccgcaccctccacgcccatggccactagcctgaggaggccgtctttc 22002499
Query: 241 accggctgttcttcctcccctccggacgcggacgacgagggcgtgcgcggcacttgcgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22002498 accggctgttcttcctcccctccggacgcggacgacgagggcgtgcgcggcacttgcgaa 22002439
Query: 301 gatgcttctctgtgcaagcg 320
||||||||||||||||||||
Sbjct: 22002438 gatgcttctctgtgcaagcg 22002419
Score = 626 bits (316), Expect = e-177
Identities = 319/320 (99%)
Strand = Plus / Minus
Query: 1 ttgtccaaggagcctgtcggacgaagacgccgagacgctggaaggttgctggcgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22189590 ttgtccaaggagcctgtcggacgaagacgccgagacgctggaaggttgctggcgcagctg 22189531
Query: 61 cggagggcggcgtcactgagccgcgccggcggcgccggttgcagacccgctcctctcgcc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 22189530 cggagggcggcgtcactgagccgcgccggcggagccggttgcagacccgctcctctcgcc 22189471
Query: 121 tgctttctccggggctcgcttcttcacccagggtccgtcgagccttttccatgtcccggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22189470 tgctttctccggggctcgcttcttcacccagggtccgtcgagccttttccatgtcccggg 22189411
Query: 181 tagacgcagtcctccgcaccctccacgcccatggccactagcctgaggaggccgtctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22189410 tagacgcagtcctccgcaccctccacgcccatggccactagcctgaggaggccgtctttc 22189351
Query: 241 accggctgttcttcctcccctccggacgcggacgacgagggcgtgcgcggcacttgcgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22189350 accggctgttcttcctcccctccggacgcggacgacgagggcgtgcgcggcacttgcgaa 22189291
Query: 301 gatgcttctctgtgcaagcg 320
||||||||||||||||||||
Sbjct: 22189290 gatgcttctctgtgcaagcg 22189271
Score = 626 bits (316), Expect = e-177
Identities = 319/320 (99%)
Strand = Plus / Plus
Query: 1 ttgtccaaggagcctgtcggacgaagacgccgagacgctggaaggttgctggcgcagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22202600 ttgtccaaggagcctgtcggacgaagacgccgagacgctggaaggttgctggcgcagctg 22202659
Query: 61 cggagggcggcgtcactgagccgcgccggcggcgccggttgcagacccgctcctctcgcc 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 22202660 cggagggcggcgtcactgagccgcgccggcggagccggttgcagacccgctcctctcgcc 22202719
Query: 121 tgctttctccggggctcgcttcttcacccagggtccgtcgagccttttccatgtcccggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22202720 tgctttctccggggctcgcttcttcacccagggtccgtcgagccttttccatgtcccggg 22202779
Query: 181 tagacgcagtcctccgcaccctccacgcccatggccactagcctgaggaggccgtctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22202780 tagacgcagtcctccgcaccctccacgcccatggccactagcctgaggaggccgtctttc 22202839
Query: 241 accggctgttcttcctcccctccggacgcggacgacgagggcgtgcgcggcacttgcgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22202840 accggctgttcttcctcccctccggacgcggacgacgagggcgtgcgcggcacttgcgaa 22202899
Query: 301 gatgcttctctgtgcaagcg 320
||||||||||||||||||||
Sbjct: 22202900 gatgcttctctgtgcaagcg 22202919
Score = 264 bits (133), Expect = 1e-67
Identities = 237/269 (88%), Gaps = 2/269 (0%)
Strand = Plus / Minus
Query: 54 gcagctgcggagggcggcgtcactgagccgcgccggcggcgccggttgcagacccgctcc 113
|||||||||| || | | |||||||||||||||| || | ||||||||||| | |||||
Sbjct: 22317321 gcagctgcggtggaccgtgtcactgagccgcgccagctgggccggttgcagccgtgctcc 22317262
Query: 114 tctcgcctgctttctccggggctcgcttcttcacccagggtccg-tcgagcc-ttttcca 171
||| || | | |||||| || |||||| |||||||||| |||| |||| || |||||||
Sbjct: 22317261 tcttgcgtcccttctccaggcctcgctccttcacccagcctccggtcgaccccttttcca 22317202
Query: 172 tgtcccgggtagacgcagtcctccgcaccctccacgcccatggccactagcctgaggagg 231
||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 22317201 cgtccccggtggacgcagccctccgcagcctccacgcccatggccactagcctgaggagg 22317142
Query: 232 ccgtctttcaccggctgttcttcctcccctccggacgcggacgacgagggcgtgcgcggc 291
|||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 22317141 ccgtctttcaccaccggttcttcctctcctccggacgcggacgacgagggcgtgcgcggc 22317082
Query: 292 acttgcgaagatgcttctctgtgcaagcg 320
||||| |||||||||||||||||||||||
Sbjct: 22317081 acttgggaagatgcttctctgtgcaagcg 22317053
Score = 246 bits (124), Expect = 3e-62
Identities = 133/136 (97%)
Strand = Plus / Minus
Query: 1189 ggtttgaaagaaattacttattgatctgttcaagatgcgtgcggatccagagccaaagcc 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21957729 ggtttgaaagaaattacttattgatctgttcaagatgcgtgcggatccagagccaaagcc 21957670
Query: 1249 accaccctctctggagctgagtctctgaagtttccaggcggtggttaagcctctgcttcc 1308
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 21957669 accaccctctctggagctgagtctctgagtttcccaggcggtggttaagcctctgcttcc 21957610
Query: 1309 agtacccctgcccttg 1324
||||||||||||||||
Sbjct: 21957609 agtacccctgcccttg 21957594
Score = 246 bits (124), Expect = 3e-62
Identities = 133/136 (97%)
Strand = Plus / Minus
Query: 1189 ggtttgaaagaaattacttattgatctgttcaagatgcgtgcggatccagagccaaagcc 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22143966 ggtttgaaagaaattacttattgatctgttcaagatgcgtgcggatccagagccaaagcc 22143907
Query: 1249 accaccctctctggagctgagtctctgaagtttccaggcggtggttaagcctctgcttcc 1308
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 22143906 accaccctctctggagctgagtctctgagtttcccaggcggtggttaagcctctgcttcc 22143847
Query: 1309 agtacccctgcccttg 1324
||||||||||||||||
Sbjct: 22143846 agtacccctgcccttg 22143831
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 777 attgcccaccctcctggtggctgaatgtgtgctggtttacatgactccggagcagtctgc 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21970194 attgcccaccctcctggtggctgaatgtgtgctggtttacatgactccggagcagtctgc 21970135
Query: 837 aaaccttctcaagtgggccgccaacagtttcgagactgccatgttcataaactacgaaca 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21970134 aaaccttctcaagtgggccgccaacagtttcgagactgccatgttcataaactacgaaca 21970075
Query: 897 ggt 899
|||
Sbjct: 21970074 ggt 21970072
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 777 attgcccaccctcctggtggctgaatgtgtgctggtttacatgactccggagcagtctgc 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22156432 attgcccaccctcctggtggctgaatgtgtgctggtttacatgactccggagcagtctgc 22156373
Query: 837 aaaccttctcaagtgggccgccaacagtttcgagactgccatgttcataaactacgaaca 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22156372 aaaccttctcaagtgggccgccaacagtttcgagactgccatgttcataaactacgaaca 22156313
Query: 897 ggt 899
|||
Sbjct: 22156312 ggt 22156310
Score = 232 bits (117), Expect = 4e-58
Identities = 123/125 (98%)
Strand = Plus / Minus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 21991242 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcatttctacggaagac 21991183
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21991182 agggtgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 21991123
Query: 531 aaagg 535
|||||
Sbjct: 21991122 aaagg 21991118
Score = 232 bits (117), Expect = 4e-58
Identities = 123/125 (98%)
Strand = Plus / Minus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 22178068 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcatttctacggaagac 22178009
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22178008 agggtgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 22177949
Query: 531 aaagg 535
|||||
Sbjct: 22177948 aaagg 22177944
Score = 232 bits (117), Expect = 4e-58
Identities = 123/125 (98%)
Strand = Plus / Plus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 22214016 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcatttctacggaagac 22214075
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22214076 agggtgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 22214135
Query: 531 aaagg 535
|||||
Sbjct: 22214136 aaagg 22214140
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 895 caggtgaacatggatgaccggtttgggcagatcatgattgagaacctgcggcggcgacag 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21965802 caggtgaacatggatgaccggtttgggcagatcatgattgagaacctgcggcggcgacag 21965743
Query: 955 tgtgacctggcgggagtcgagacctgcaagtcgttagagtcgcag 999
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21965742 tgtgacctggcgggagtcgagacctgcaagtcgttagagtcgcag 21965698
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 895 caggtgaacatggatgaccggtttgggcagatcatgattgagaacctgcggcggcgacag 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22152039 caggtgaacatggatgaccggtttgggcagatcatgattgagaacctgcggcggcgacag 22151980
Query: 955 tgtgacctggcgggagtcgagacctgcaagtcgttagagtcgcag 999
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22151979 tgtgacctggcgggagtcgagacctgcaagtcgttagagtcgcag 22151935
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 1088 gcagaatagagtcccttgaattcctggatgaaatggagcttcttgagcaactcatgcagc 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21959782 gcagaatagagtcccttgaattcctggatgaaatggagcttcttgagcaactcatgcagc 21959723
Query: 1148 attactgcctttgctgggcaaccaaaggaggcagtaatctgggt 1191
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21959722 attactgcctttgctgggcaaccaaaggaggcagtaatctgggt 21959679
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 1088 gcagaatagagtcccttgaattcctggatgaaatggagcttcttgagcaactcatgcagc 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22146019 gcagaatagagtcccttgaattcctggatgaaatggagcttcttgagcaactcatgcagc 22145960
Query: 1148 attactgcctttgctgggcaaccaaaggaggcagtaatctgggt 1191
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22145959 attactgcctttgctgggcaaccaaaggaggcagtaatctgggt 22145916
Score = 198 bits (100), Expect = 5e-48
Identities = 103/104 (99%)
Strand = Plus / Minus
Query: 673 gacgggcacacattggattcaacgagatatgccatcattggagccgatctccgagatatt 732
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 22164645 gacgggcacacattggattcaacgagatatgccatcattggagctgatctccgagatatt 22164586
Query: 733 cctgaactggaagagaaactaaagaaatgtaacatgaatacaca 776
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22164585 cctgaactggaagagaaactaaagaaatgtaacatgaatacaca 22164542
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 320 gatttgcggtgagcattggctactggcaggacccttacatcccgcatttggtgagactgt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21994050 gatttgcggtgagcattggctactggcaggacccttacatcccgcatttggtgagactgt 21993991
Query: 380 ctaaagagaggaaggcccccgaaattaacagagg 413
||||||||||||||||||||||||||||||||||
Sbjct: 21993990 ctaaagagaggaaggcccccgaaattaacagagg 21993957
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 320 gatttgcggtgagcattggctactggcaggacccttacatcccgcatttggtgagactgt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22180875 gatttgcggtgagcattggctactggcaggacccttacatcccgcatttggtgagactgt 22180816
Query: 380 ctaaagagaggaaggcccccgaaattaacagagg 413
||||||||||||||||||||||||||||||||||
Sbjct: 22180815 ctaaagagaggaaggcccccgaaattaacagagg 22180782
Score = 182 bits (92), Expect = 3e-43
Identities = 102/104 (98%), Gaps = 1/104 (0%)
Strand = Plus / Minus
Query: 673 gacgggcacacattggattcaacgagatatgccatcattggagccgatctccgagatatt 732
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 21978507 gacgggcacacat-ggattcaacgagatatgccatcattggagctgatctccgagatatt 21978449
Query: 733 cctgaactggaagagaaactaaagaaatgtaacatgaatacaca 776
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21978448 cctgaactggaagagaaactaaagaaatgtaacatgaatacaca 21978405
Score = 178 bits (90), Expect = 5e-42
Identities = 93/94 (98%)
Strand = Plus / Minus
Query: 998 agaaagaacggctcctgtccagtgggtgggaatcggcttcagccgtggacatgatggaat 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21964405 agaaagaacggctcctgtccagtgggtgggaatcggcttcagccgtggacatgatggaat 21964346
Query: 1058 tgtacagcaagttacctcgcgcggaagtgagcag 1091
|||||||||||||||||||||| |||||||||||
Sbjct: 21964345 tgtacagcaagttacctcgcgcagaagtgagcag 21964312
Score = 178 bits (90), Expect = 5e-42
Identities = 93/94 (98%)
Strand = Plus / Minus
Query: 998 agaaagaacggctcctgtccagtgggtgggaatcggcttcagccgtggacatgatggaat 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22150642 agaaagaacggctcctgtccagtgggtgggaatcggcttcagccgtggacatgatggaat 22150583
Query: 1058 tgtacagcaagttacctcgcgcggaagtgagcag 1091
|||||||||||||||||||||| |||||||||||
Sbjct: 22150582 tgtacagcaagttacctcgcgcagaagtgagcag 22150549
Score = 170 bits (86), Expect = 1e-39
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 320 gatttgcggtgagcattggctactggcaggacccttacatcccgcatttggtgagactgt 379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 22209586 gatttgcggtgagcattggctactggcaggacccttgcatcccgcatttggtgagactgt 22209645
Query: 380 ctaaagagaggaaggcccccgaaattaacagagg 413
|||||| |||||||||||||||||||||||||||
Sbjct: 22209646 ctaaagcgaggaaggcccccgaaattaacagagg 22209679
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 533 aggatgaagatcttctaccaagtaaatattttgaaatagactttccaatgatcgtcacga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21985988 aggatgaagatcttctaccaagtaaatattttgaaatagactttccaatgatcgtcacga 21985929
Query: 593 gaaagctgcatagcatcaa 611
|||||||||||||||||||
Sbjct: 21985928 gaaagctgcatagcatcaa 21985910
Score = 157 bits (79), Expect = 2e-35
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
|||||||||||||| ||||| |||||||||| |||||||||| |||||| | ||||||
Sbjct: 22013630 aggatattttgctcacatccacagcgtcagtcatcttatcaaggtgtttctgctgaagac 22013571
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct: 22013570 aggatgcaactgtcaaattctaaaccttggggctggcatggataccaccttccggagctt 22013511
Query: 531 aaa 533
|||
Sbjct: 22013510 aaa 22013508
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 533 aggatgaagatcttctaccaagtaaatattttgaaatagactttccaatgatcgtcacga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22172140 aggatgaagatcttctaccaagtaaatattttgaaatagactttccaatgatcgtcacga 22172081
Query: 593 gaaagctgcatagcatcaa 611
|||||||||||||||||||
Sbjct: 22172080 gaaagctgcatagcatcaa 22172062
Score = 157 bits (79), Expect = 2e-35
Identities = 112/123 (91%)
Strand = Plus / Plus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
|||||||||||||| ||||| |||||||||| |||||||||| |||||| | ||||||
Sbjct: 22191708 aggatattttgctcacatccacagcgtcagtcatcttatcaaggtgtttctgctgaagac 22191767
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct: 22191768 aggatgcaactgtcaaattctaaaccttggggctggcatggataccaccttccggagctt 22191827
Query: 531 aaa 533
|||
Sbjct: 22191828 aaa 22191830
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 612 attgaaacctcttctttcaaaacccattttagacttacattcagaggacacacttcaaat 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21983794 attgaaacctcttctttcaaaacccattttagacttacattcagaggacacacttcaaat 21983735
Query: 672 gg 673
||
Sbjct: 21983734 gg 21983733
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 612 attgaaacctcttctttcaaaacccattttagacttacattcagaggacacacttcaaat 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22169945 attgaaacctcttctttcaaaacccattttagacttacattcagaggacacacttcaaat 22169886
Query: 672 gg 673
||
Sbjct: 22169885 gg 22169884
Score = 111 bits (56), Expect = 1e-21
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 195 cgcaccctccacgcccatggccactagcctgaggaggccgtctttcaccggctgttcttc 254
|||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 22350847 cgcaacctccacacccatggccactagcctgaggaggccctctttcaccacctgttcttc 22350788
Query: 255 ctcccctccggacgcggacgacgagggcgtgcgcggcacttgcgaagatgcttctctgtg 314
||| || | ||| |||||| |||||| | || |||||| ||||||||||||| ||||
Sbjct: 22350787 ctcagctaccgaccaagacgacaagggcgcgtgctgcactttcgaagatgcttctatgtg 22350728
Query: 315 caagcgat 322
||||||||
Sbjct: 22350727 caagcgat 22350720
Score = 87.7 bits (44), Expect = 1e-14
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 612 attgaaacctcttctttcaaaacccattttagacttacattcagaggacacacttcaaat 671
|||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct: 22328450 attgaaacctctcctgtcaaaacccattttagatttacattcagaggtcacacttcagat 22328391
Query: 672 ggac 675
||||
Sbjct: 22328390 ggac 22328387
>Sscrofa_Chr07
|| Length = 134764511
Score = 357 bits (180), Expect = 1e-95
Identities = 249/272 (91%)
Strand = Plus / Minus
Query: 43 aggttgctggcgcagctgcggagggcggcgtcactgagccgcgccggcggcgccggttgc 102
||||||||||||||| ||| |||||||||||||||||||||| || |||| ||||| |||
Sbjct: 79403170 aggttgctggcgcagttgccgagggcggcgtcactgagccgcaccagcggagccgggtgc 79403111
Query: 103 agacccgctcctctcgcctgctttctccggggctcgcttcttcacccagggtccgtcgag 162
|| || ||||||||||||||| ||||| ||||||||||||||||||| | |||||| |||
Sbjct: 79403110 agcccggctcctctcgcctgccttctcgggggctcgcttcttcaccctgcgtccgtggag 79403051
Query: 163 ccttttccatgtcccgggtagacgcagtcctccgcaccctccacgcccatggccactagc 222
||||||||||||||| || ||||||| |||||||| |||||| ||||||||||||||||
Sbjct: 79403050 ccttttccatgtccccagtggacgcagccctccgcagcctccaagcccatggccactagc 79402991
Query: 223 ctgaggaggccgtctttcaccggctgttcttcctcccctccggacgcggacgacgagggc 282
||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 79402990 ctgaggaggccctctttcaccgcctgttcttcctcccctacggacgcggacgacgagggc 79402931
Query: 283 gtgcgcggcacttgcgaagatgcttctctgtg 314
||||| ||||||||||||||||||||||||||
Sbjct: 79402930 gtgcggggcacttgcgaagatgcttctctgtg 79402899
Score = 246 bits (124), Expect = 3e-62
Identities = 136/140 (97%)
Strand = Plus / Minus
Query: 417 ttttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagacaggatg 476
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 79402895 ttttgctcgtgtctacggcgtcagtcagcttatgaaggcgtttctacggaagacaggatg 79402836
Query: 477 caactgtcaaattctaaaccttggggctgggatggataccaccttctggaggttaaagga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 79402835 caactgtcaaattctaaaccttggggctgggatggataccaccttctggaggttatagga 79402776
Query: 537 tgaagatcttctaccaagta 556
||| ||||||||||||||||
Sbjct: 79402775 tgaggatcttctaccaagta 79402756
>Sscrofa_Chr10
|| Length = 79102373
Score = 341 bits (172), Expect = 6e-91
Identities = 259/288 (89%)
Strand = Plus / Minus
Query: 33 agacgctggaaggttgctggcgcagctgcggagggcggcgtcactgagccgcgccggcgg 92
||||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 22267712 agacgctgggaggttgctggtgcagctgcctagggcggcgtcactgagccgcgccagcgg 22267653
Query: 93 cgccggttgcagacccgctcctctcgcctgctttctccggggctcgcttcttcacccagg 152
||| | ||||| |||||||||||||||||| ||||| | |||||||||||||||| |
Sbjct: 22267652 agccaggtgcagccccgctcctctcgcctgccttctctgcggctcgcttcttcaccaggc 22267593
Query: 153 gtccgtcgagccttttccatgtcccgggtagacgcagtcctccgcaccctccacgcccat 212
|||| |||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||
Sbjct: 22267592 gtccctcgagccttttccatgcccccggtggacgcagcccttcgcaccctccacgcccat 22267533
Query: 213 ggccactagcctgaggaggccgtctttcaccggctgttcttcctcccctccggacgcgga 272
||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||
Sbjct: 22267532 ggccactagcctgaggaggccgtcttttaccgcctgttcttcctcccttctggacgcgga 22267473
Query: 273 cgacgagggcgtgcgcggcacttgcgaagatgcttctctgtgcaagcg 320
||||||||||||||| ||| |||| |||||||| ||||||||||||||
Sbjct: 22267472 cgacgagggcgtgcgtggcccttgtgaagatgcctctctgtgcaagcg 22267425
Score = 309 bits (156), Expect = 2e-81
Identities = 255/288 (88%)
Strand = Plus / Plus
Query: 33 agacgctggaaggttgctggcgcagctgcggagggcggcgtcactgagccgcgccggcgg 92
||||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 22344925 agacgctgggaggttgctggtgcagctgcctagggcggcgtcactgagccgcgccagcgg 22344984
Query: 93 cgccggttgcagacccgctcctctcgcctgctttctccggggctcgcttcttcacccagg 152
||| | ||||| |||||||||||||||||| ||||| | |||||||||||||||| |
Sbjct: 22344985 agccaggtgcagccccgctcctctcgcctgccttctctgcggctcgcttcttcaccaggc 22345044
Query: 153 gtccgtcgagccttttccatgtcccgggtagacgcagtcctccgcaccctccacgcccat 212
|| | |||||||||||||||| ||| ||| || |||| | | ||||||||||||||||||
Sbjct: 22345045 gttcctcgagccttttccatgcccccggtggatgcagcctttcgcaccctccacgcccat 22345104
Query: 213 ggccactagcctgaggaggccgtctttcaccggctgttcttcctcccctccggacgcgga 272
||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||
Sbjct: 22345105 ggccactagcctgaggaggccgtcttttaccgcctgttcttcctcccttctggacgcgga 22345164
Query: 273 cgacgagggcgtgcgcggcacttgcgaagatgcttctctgtgcaagcg 320
||||||||||||||| ||| |||| |||||||| |||||||||||||
Sbjct: 22345165 cgacgagggcgtgcgtggcccttgtgaagatgccactctgtgcaagcg 22345212
Score = 210 bits (106), Expect = 1e-51
Identities = 122/126 (96%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagctt-atcaaggcgtttctacggaaga 469
|||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct: 22255405 aggatattttgctcatgtccacggcatcagtcagctttatcaaggtgtttctacggaaga 22255346
Query: 470 caggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22255345 caggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggt 22255286
Query: 530 taaagg 535
||||||
Sbjct: 22255285 taaagg 22255280
Score = 208 bits (105), Expect = 6e-51
Identities = 120/125 (96%)
Strand = Plus / Minus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
|||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||
Sbjct: 22256935 aggatattttgctcatgtccacagtgtcagtcagcttatcaaggtgtttctacggaagac 22256876
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22256875 agggtgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 22256816
Query: 531 aaagg 535
|||||
Sbjct: 22256815 aaagg 22256811
Score = 170 bits (86), Expect = 1e-39
Identities = 92/94 (97%)
Strand = Plus / Minus
Query: 320 gatttgcggtgagcattggctactggcaggacccttacatcccgcatttggtgagactgt 379
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 22259399 gatttgcggtgagcattggctactggcaggacccttgcatcccgcatttggtgagactgt 22259340
Query: 380 ctaaagagaggaaggcccccgaaattaacagagg 413
|||||| |||||||||||||||||||||||||||
Sbjct: 22259339 ctaaagcgaggaaggcccccgaaattaacagagg 22259306
Score = 165 bits (83), Expect = 8e-38
Identities = 113/123 (91%)
Strand = Plus / Plus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
|||||||||||||| ||||| || |||||||||||||||||| |||||||| ||||||
Sbjct: 22271954 aggatattttgctcacatccacagcatcagtcagcttatcaaggtgtttctactgaagac 22272013
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 22272014 aggatgcaactctcaaattctaaaccttggggctggcatggataccaccttctggagctt 22272073
Query: 531 aaa 533
|||
Sbjct: 22272074 aaa 22272076
>Sscrofa_Chr14
|| Length = 153851969
Score = 125 bits (63), Expect = 7e-26
Identities = 109/123 (88%), Gaps = 1/123 (0%)
Strand = Plus / Minus
Query: 411 aggatattttgctcgtgtccacggcgtcagtcagcttatcaaggcgtttctacggaagac 470
||||| ||||||| ||||||| ||||||||||| |||| | |||| ||| || || |||
Sbjct: 23731015 aggatgttttgct-gtgtccatggcgtcagtcaacttaaccaggcatttttatgggggac 23730957
Query: 471 aggatgcaactgtcaaattctaaaccttggggctgggatggataccaccttctggaggtt 530
|| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 23730956 agaatgcaactgtcaaattctaaaccttggggctaggatggatacaaccttctggaggtt 23730897
Query: 531 aaa 533
|||
Sbjct: 23730896 aaa 23730894
Score = 65.9 bits (33), Expect = 5e-08
Identities = 87/105 (82%)
Strand = Plus / Minus
Query: 211 atggccactagcctgaggaggccgtctttcaccggctgttcttcctcccctccggacgcg 270
|||||||||| |||||||| ||| ||| ||||| |||| | ||| ||||||| ||| |
Sbjct: 23726801 atggccactaacctgaggacgccctctgtcaccacctgtccctccacccctcctgacatg 23726742
Query: 271 gacgacgagggcgtgcgcggcacttgcgaagatgcttctctgtgc 315
||| | |||||||| | ||||||||||||||||||||| |||||
Sbjct: 23726741 gacaaggagggcgtctgtggcacttgcgaagatgcttctatgtgc 23726697
>gb|GL893108.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1906
Length = 6745
Score = 73.8 bits (37), Expect = 2e-10
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 200 cctccacgcccatggccactagcctgaggaggccgtctttcaccggctgttcttcctccc 259
||||||| ||| | |||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 6707 cctccacaccctttgccactagcctgaggaggccctctttcaacacctgttcttcctccc 6648
Query: 260 ctccggacgcggacgacgagggcgtgcgcggcacttgcgaagatgcttctctgtgcaagc 319
| | |||| || ||| |||| | | |||||||| |||||||||||||||||| |||
Sbjct: 6647 cggccaacgcagaagacatgggcttctggggcacttgtgaagatgcttctctgtgccagc 6588
Query: 320 g 320
|
Sbjct: 6587 g 6587
>gb|GL894595.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3244
Length = 6044
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 200 cctccacgcccatggccactagcctgaggaggccgtctttcaccggctgttcttcctccc 259
|||||||| || |||||||||||||||||| ||| ||||||| | ||||||||||||||
Sbjct: 5340 cctccacggccttggccactagcctgaggaagccctctttcaacacctgttcttcctccc 5281
Query: 260 ct 261
||
Sbjct: 5280 ct 5279
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,885,546
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 42
Length of query: 1324
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1303
Effective length of database: 2,808,413,156
Effective search space: 3659362342268
Effective search space used: 3659362342268
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)