Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008019
(1783 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077233.1| myosin regulatory light chain 12B [Bos tauru... 315 1e-85
Alignment gi|XP_002706993.1| PREDICTED: myosin regulatory light chain MRC... 315 1e-85
Alignment gi|NP_001015640.1| myosin regulatory light polypeptide 9 [Bos t... 314 1e-85
Alignment gi|NP_001068702.1| myosin regulatory light chain 9 [Bos taurus]. 299 5e-81
Alignment gi|NP_001030197.1| myosin regulatory light chain 2, ventricular... 178 2e-44
Alignment gi|XP_002698161.1| PREDICTED: myosin light chain 2, precursor l... 173 4e-43
Alignment gi|NP_001069115.1| myosin regulatory light chain 2, skeletal mu... 172 1e-42
Alignment gi|XP_002686938.1| PREDICTED: myosin light chain 2a-like [Bos t... 166 5e-41
Alignment gi|XP_585011.4| PREDICTED: myosin light chain 2a-like [Bos taur... 166 5e-41
Alignment gi|XP_874695.3| PREDICTED: myosin light chain 2, precursor lymp... 135 9e-32
>ref|NP_001077233.1| myosin regulatory light chain 12B [Bos taurus].
Length = 171
Score = 315 bits (806), Expect = 1e-85
Identities = 153/154 (99%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYL+AM
Sbjct: 13 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLEAM 72
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 73 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 132
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 133 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 166
>ref|XP_002706993.1| PREDICTED: myosin regulatory light chain MRCL2-like [Bos taurus].
Length = 171
Score = 315 bits (806), Expect = 1e-85
Identities = 153/154 (99%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYL+AM
Sbjct: 13 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLEAM 72
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 73 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 132
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 133 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 166
>ref|NP_001015640.1| myosin regulatory light polypeptide 9 [Bos taurus].
Length = 172
Score = 314 bits (805), Expect = 1e-85
Identities = 153/154 (99%), Positives = 153/154 (99%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|NP_001068702.1| myosin regulatory light chain 9 [Bos taurus].
Length = 172
Score = 299 bits (766), Expect = 5e-81
Identities = 143/154 (92%), Positives = 150/154 (97%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS+GKNPTD YL+ M
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
M+EAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEA+G I ED+LRELLTTMGDR
Sbjct: 74 MSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDE+YREAPIDKKGNFNY+EFTRILKHGA
Sbjct: 134 FTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGA 167
>ref|NP_001030197.1| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Bos taurus].
Length = 166
Score = 178 bits (451), Expect = 2e-44
Identities = 84/154 (54%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDA 1129
R + A NVF+MF+Q+QIQEFKEAF ++DQNRDGFIDK DL D A+LG+ N + +D
Sbjct: 9 RAEGANYNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDE 68
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
M+ EAPGPINFT+FL MFGEKL G DPE+ I NAF FD E G ++ DY++E+LTT +
Sbjct: 69 MLKEAPGPINFTVFLQMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYIKEMLTTQAE 128
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
RF+ EE+D+++ P D GN +Y I+ HG
Sbjct: 129 RFSKEEIDQMFAAFPPDVTGNLDYKNLVHIITHG 162
>ref|XP_002698161.1| PREDICTED: myosin light chain 2, precursor lymphocyte-specific-like
[Bos taurus].
Length = 214
Score = 173 bits (439), Expect = 4e-43
Identities = 85/150 (56%), Positives = 109/150 (72%), Gaps = 1/150 (0%)
Frame = +2
Query: 965 ATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNE 1141
A+SNVF+MFDQSQIQEFKEAF ++DQNRDGFIDKEDL D G+ N + L+AM+ E
Sbjct: 61 ASSNVFSMFDQSQIQEFKEAFTIMDQNRDGFIDKEDLRDTYPPPGRINVKNEELEAMVKE 120
Query: 1142 APGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTD 1321
APGPINFT+FLTMFGEKL GTDPE+ I +AF FD E G ++ D+++E L T DRF++
Sbjct: 121 APGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSE 180
Query: 1322 EEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
EEV +++ P D GN +Y ++ HG
Sbjct: 181 EEVKQMFAAFPPDVCGNLDYRNLCYVITHG 210
>ref|NP_001069115.1| myosin regulatory light chain 2, skeletal muscle isoform [Bos
taurus].
Length = 170
Score = 172 bits (435), Expect = 1e-42
Identities = 86/149 (57%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Frame = +2
Query: 968 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 1144
+S+VF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 16 SSSVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 75
Query: 1145 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 1324
GPINFT+FL MFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 76 SGPINFTVFLNMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQE 135
Query: 1325 EVDELYREAPIDKKGNFNYIEFTRILKHG 1411
E+ ++ P D GN +Y ++ HG
Sbjct: 136 EIKNMWAAFPPDVGGNVDYKNICYVITHG 164
>ref|XP_002686938.1| PREDICTED: myosin light chain 2a-like [Bos taurus].
Length = 235
Score = 166 bits (421), Expect = 5e-41
Identities = 81/152 (53%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Frame = +2
Query: 959 QRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMM 1135
QR +SNVF+MF+Q+QIQEFKEAF+ IDQNRDG I K DL + + LGK N + LDAM+
Sbjct: 79 QRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLRETYSQLGKVNVPEEELDAML 138
Query: 1136 NEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRF 1315
E GPINFT+FLT+FGEKLNGTDPE+ I +AF FD G + +D R+LL T D+F
Sbjct: 139 QEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRLFDPSGKGVVNKDEFRQLLLTQADKF 198
Query: 1316 TDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
+ EV++++ P+D GN +Y I+ HG
Sbjct: 199 SPAEVEQMFALTPMDLAGNIDYKSLCYIITHG 230
>ref|XP_585011.4| PREDICTED: myosin light chain 2a-like [Bos taurus].
Length = 235
Score = 166 bits (421), Expect = 5e-41
Identities = 81/152 (53%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Frame = +2
Query: 959 QRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMM 1135
QR +SNVF+MF+Q+QIQEFKEAF+ IDQNRDG I K DL + + LGK N + LDAM+
Sbjct: 79 QRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLRETYSQLGKVNVPEEELDAML 138
Query: 1136 NEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRF 1315
E GPINFT+FLT+FGEKLNGTDPE+ I +AF FD G + +D R+LL T D+F
Sbjct: 139 QEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRLFDPSGKGVVNKDEFRQLLLTQADKF 198
Query: 1316 TDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
+ EV++++ P+D GN +Y I+ HG
Sbjct: 199 SPAEVEQMFALTPMDLAGNIDYKSLCYIITHG 230
>ref|XP_874695.3| PREDICTED: myosin light chain 2, precursor lymphocyte-specific-like
[Bos taurus].
Length = 214
Score = 135 bits (341), Expect = 9e-32
Identities = 72/154 (46%), Positives = 97/154 (62%), Gaps = 5/154 (3%)
Frame = +2
Query: 965 ATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-----NPTDAYLDA 1129
A+SNVF+MFDQSQIQEFKE + Q G + +H +G N + L+A
Sbjct: 61 ASSNVFSMFDQSQIQEFKE----VGQLPLGLWEVTGMHGKPLDVGSALSRINVKNEELEA 116
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
M+ EAPGPINFT+FLTMFGEKL GTDPE+ I +AF FD E G ++ D+++E L T D
Sbjct: 117 MVKEAPGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQAD 176
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
RF++EEV +++ P D GN +Y ++ HG
Sbjct: 177 RFSEEEVKQMFAAFPPDVCGNLDYRNLCYVITHG 210
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,826,701
Number of extensions: 1509196
Number of successful extensions: 7987
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 7826
Number of HSP's successfully gapped: 43
Length of query: 594
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 486
Effective length of database: 14,107,870
Effective search space: 6856424820
Effective search space used: 6856424820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008019
(1783 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857360.1| PREDICTED: similar to myosin regulatory light c... 315 1e-85
Alignment gi|XP_537316.1| PREDICTED: similar to myosin regulatory light c... 315 1e-85
Alignment gi|XP_848839.1| PREDICTED: similar to Myosin regulatory light c... 314 2e-85
Alignment gi|XP_542980.2| PREDICTED: similar to Myosin regulatory light c... 300 3e-81
Alignment gi|XP_532394.1| PREDICTED: similar to Myosin regulatory light c... 296 3e-80
Alignment gi|XP_849419.1| PREDICTED: similar to Myosin regulatory light c... 291 1e-78
Alignment gi|XP_853137.1| PREDICTED: similar to myosin regulatory light c... 286 3e-77
Alignment gi|XP_538146.1| PREDICTED: similar to Myosin regulatory light c... 272 7e-73
Alignment gi|XP_855316.1| PREDICTED: similar to Myosin regulatory light c... 269 7e-72
Alignment gi|NP_001003069.1| myosin regulatory light chain 2, ventricular... 183 4e-46
>ref|XP_857360.1| PREDICTED: similar to myosin regulatory light chain-like isoform 4
[Canis familiaris].
Length = 172
Score = 315 bits (806), Expect = 1e-85
Identities = 153/154 (99%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYL+AM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLEAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|XP_537316.1| PREDICTED: similar to myosin regulatory light chain-like isoform 1
[Canis familiaris].
Length = 172
Score = 315 bits (806), Expect = 1e-85
Identities = 153/154 (99%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYL+AM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLEAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|XP_848839.1| PREDICTED: similar to Myosin regulatory light chain 2, nonsarcomeric
(Myosin RLC) isoform 1 [Canis familiaris].
Length = 178
Score = 314 bits (805), Expect = 2e-85
Identities = 153/154 (99%), Positives = 153/154 (99%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YLDAM
Sbjct: 20 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLDAM 79
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 80 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 139
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 140 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 173
>ref|XP_542980.2| PREDICTED: similar to Myosin regulatory light chain 2, smooth muscle
isoform (Myosin RLC) (LC20) [Canis familiaris].
Length = 379
Score = 300 bits (768), Expect = 3e-81
Identities = 144/154 (93%), Positives = 150/154 (97%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YL+ M
Sbjct: 221 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLEGM 280
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
M+EAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEA+G I ED+LRELLTTMGDR
Sbjct: 281 MSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDR 340
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDE+YREAPIDKKGNFNY+EFTRILKHGA
Sbjct: 341 FTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGA 374
>ref|XP_532394.1| PREDICTED: similar to Myosin regulatory light chain 2-A, smooth
muscle isoform (Myosin RLC-A) isoform 1 [Canis
familiaris].
Length = 172
Score = 296 bits (759), Expect = 3e-80
Identities = 145/154 (94%), Positives = 147/154 (95%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQ ATSNVFAMFDQSQIQEFKEAFNM+DQNRDGFIDKEDL DMLASLGKNPTD YLDAM
Sbjct: 14 RPQHATSNVFAMFDQSQIQEFKEAFNMMDQNRDGFIDKEDLRDMLASLGKNPTDEYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFL MFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD
Sbjct: 74 MNEAPGPINFTMFLMMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDW 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAP+DKKGNFNY EFTRILKH A
Sbjct: 134 FTDEEVDELYREAPMDKKGNFNYTEFTRILKHRA 167
>ref|XP_849419.1| PREDICTED: similar to Myosin regulatory light chain 2-A, smooth
muscle isoform (Myosin RLC-A) isoform 2 [Canis
familiaris].
Length = 172
Score = 291 bits (745), Expect = 1e-78
Identities = 141/153 (92%), Positives = 145/153 (94%)
Frame = +2
Query: 956 PQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMM 1135
PQR TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFID EDLHDMLASLGK+PT YLDAMM
Sbjct: 15 PQRTTSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDLEDLHDMLASLGKDPTTEYLDAMM 74
Query: 1136 NEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRF 1315
NEAPGPINF MFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTT GDRF
Sbjct: 75 NEAPGPINFAMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTTGDRF 134
Query: 1316 TDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
TDEE+DELYR+AP+DKKGNFNYIEFTR LKH A
Sbjct: 135 TDEEMDELYRDAPVDKKGNFNYIEFTRNLKHDA 167
>ref|XP_853137.1| PREDICTED: similar to myosin regulatory light chain-like [Canis
familiaris].
Length = 213
Score = 286 bits (733), Expect = 3e-77
Identities = 142/153 (92%), Positives = 145/153 (94%)
Frame = +2
Query: 956 PQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMM 1135
PQ ATSNVFAMFDQSQI+EFKEAF MIDQNRD FIDKEDLHDMLASLGKNPTDAYL+AMM
Sbjct: 56 PQHATSNVFAMFDQSQIREFKEAFKMIDQNRDDFIDKEDLHDMLASLGKNPTDAYLEAMM 115
Query: 1136 NEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRF 1315
NEAP PINFTMFLTMFGEKLNGTD EDVIRNAFACFDEEATGTIQEDY RELLTTMGDRF
Sbjct: 116 NEAPEPINFTMFLTMFGEKLNGTDLEDVIRNAFACFDEEATGTIQEDYPRELLTTMGDRF 175
Query: 1316 TDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
TDEEV+ELYREAPIDKKGNFNYIEFT IL HGA
Sbjct: 176 TDEEVNELYREAPIDKKGNFNYIEFTCILIHGA 208
>ref|XP_538146.1| PREDICTED: similar to Myosin regulatory light chain 2, nonsarcomeric
(Myosin RLC) [Canis familiaris].
Length = 190
Score = 272 bits (696), Expect = 7e-73
Identities = 133/139 (95%), Positives = 135/139 (97%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQR TSNVFAMFDQSQIQ FKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YLDAM
Sbjct: 14 RPQRTTSNVFAMFDQSQIQGFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD+
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDQ 133
Query: 1313 FTDEEVDELYREAPIDKKG 1369
FTDEEVDELYREA IDK+G
Sbjct: 134 FTDEEVDELYREALIDKRG 152
>ref|XP_855316.1| PREDICTED: similar to Myosin regulatory light chain 2, smooth muscle
isoform (Myosin RLC) (LC20) [Canis familiaris].
Length = 148
Score = 269 bits (687), Expect = 7e-72
Identities = 128/143 (89%), Positives = 137/143 (95%)
Frame = +2
Query: 986 MFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFT 1165
MFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPT+ YL+ MM+EAPGPINFT
Sbjct: 1 MFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTNEYLEGMMSEAPGPINFT 60
Query: 1166 MFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYR 1345
MFLTMFGEKLNGTDP+DVIRNAFACFD+EA+G I ED+LRELLTTMGD FTDEEVDE+YR
Sbjct: 61 MFLTMFGEKLNGTDPKDVIRNAFACFDKEASGFIHEDHLRELLTTMGDHFTDEEVDEMYR 120
Query: 1346 EAPIDKKGNFNYIEFTRILKHGA 1414
EAPIDKKGNFNY+EFT ILKHGA
Sbjct: 121 EAPIDKKGNFNYVEFTCILKHGA 143
>ref|NP_001003069.1| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Canis lupus familiaris].
Length = 166
Score = 183 bits (465), Expect = 4e-46
Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDA 1129
R + A SNVF+MF+Q+QIQEFKEAF ++DQNRDGFIDK DL D A+LG+ N + +D
Sbjct: 9 RAEGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDE 68
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
M+ EAPGPINFT+FLTMFGEKL G DPE+ I NAF FD E G ++ DY+RE+LTT +
Sbjct: 69 MLKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLRADYVREMLTTQAE 128
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
RF+ EE+D+++ P D GN +Y I+ HG
Sbjct: 129 RFSKEEIDQMFAAFPPDVTGNLDYKNLVHIITHG 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,414,217
Number of extensions: 1536050
Number of successful extensions: 8351
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 8201
Number of HSP's successfully gapped: 63
Length of query: 594
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 486
Effective length of database: 15,274,216
Effective search space: 7423268976
Effective search space used: 7423268976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008019
(1783 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127890.1| PREDICTED: myosin regulatory light chain 12B... 316 2e-86
Alignment gi|XP_003127889.1| PREDICTED: myosin regulatory light chain 12B... 316 2e-86
Alignment gi|XP_003360017.1| PREDICTED: myosin regulatory light polypepti... 300 2e-81
Alignment gi|NP_001038037.1| myosin regulatory light chain 2 protein [Sus... 298 7e-81
Alignment gi|NP_998956.1| myosin light chain 2V [Sus scrofa]. 179 3e-45
Alignment gi|NP_001006592.1| myosin regulatory light chain 2, skeletal mu... 176 5e-44
Alignment gi|XP_003356877.1| PREDICTED: myosin light chain 5-like [Sus sc... 172 7e-43
Alignment gi|XP_003134933.1| PREDICTED: myosin regulatory light chain 2, ... 166 5e-41
Alignment gi|XP_003124429.2| PREDICTED: myosin regulatory light chain 10-... 144 2e-34
Alignment gi|XP_003360018.1| PREDICTED: myosin regulatory light polypepti... 137 2e-32
>ref|XP_003127890.1| PREDICTED: myosin regulatory light chain 12B isoform 2 [Sus scrofa].
Length = 172
Score = 316 bits (810), Expect = 2e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|XP_003127889.1| PREDICTED: myosin regulatory light chain 12B isoform 1 [Sus scrofa].
Length = 172
Score = 316 bits (810), Expect = 2e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|XP_003360017.1| PREDICTED: myosin regulatory light polypeptide 9 isoform 1 [Sus
scrofa].
Length = 172
Score = 300 bits (768), Expect = 2e-81
Identities = 144/154 (93%), Positives = 150/154 (97%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YL+ M
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLEGM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
M+EAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEA+G I ED+LRELLTTMGDR
Sbjct: 74 MSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDE+YREAPIDKKGNFNY+EFTRILKHGA
Sbjct: 134 FTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGA 167
>ref|NP_001038037.1| myosin regulatory light chain 2 protein [Sus scrofa].
Length = 173
Score = 298 bits (763), Expect = 7e-81
Identities = 148/155 (95%), Positives = 148/155 (95%), Gaps = 1/155 (0%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDM-LASLGKNPTDAYLDA 1129
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLH L LGKNPTD YLDA
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHGHGLPPLGKNPTDEYLDA 73
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLT MGD
Sbjct: 74 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTPMGD 133
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 168
>ref|NP_998956.1| myosin light chain 2V [Sus scrofa].
Length = 166
Score = 179 bits (455), Expect = 3e-45
Identities = 85/154 (55%), Positives = 111/154 (72%), Gaps = 1/154 (0%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDA 1129
R A SNVF+MF+Q+QIQEFKEAF ++DQNRDGFIDK DL D A+LG+ N + +D
Sbjct: 9 RADGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDE 68
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
M+ EAPGPINFT+FLTMFGEKL G DPE+ I NAF FD E G ++ DY++E+LTT +
Sbjct: 69 MIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLRADYVKEMLTTQAE 128
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
RF+ EE+++++ P D GN +Y I+ HG
Sbjct: 129 RFSKEEIEQMFAAFPPDVTGNLDYKNLVHIITHG 162
>ref|NP_001006592.1| myosin regulatory light chain 2, skeletal muscle isoform [Sus
scrofa].
Length = 169
Score = 176 bits (445), Expect = 5e-44
Identities = 88/149 (59%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Frame = +2
Query: 968 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 1144
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 15 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 74
Query: 1145 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 1324
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 75 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 134
Query: 1325 EVDELYREAPIDKKGNFNYIEFTRILKHG 1411
E+ ++ P D GN +Y ++ HG
Sbjct: 135 EIKNMWAAFPPDVGGNVDYKNICYVITHG 163
>ref|XP_003356877.1| PREDICTED: myosin light chain 5-like [Sus scrofa].
Length = 338
Score = 172 bits (435), Expect = 7e-43
Identities = 85/154 (55%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDA 1129
R QRA+SNVF+ F+Q+QIQEFKEAF ++DQNRDGFIDKEDL D SLGK N D LDA
Sbjct: 181 RAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYTSLGKTNVKDDELDA 240
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
M+ EA GPINF MFL MFGEKL+GTD E+ NAF D + G+I +DY+R LL + D
Sbjct: 241 MLKEASGPINFNMFLNMFGEKLSGTDAEETTLNAFKMLDPDGKGSIHKDYIRRLLMSQAD 300
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
T EVD++++ + +D GN +Y + + HG
Sbjct: 301 EMTANEVDQMFQFSTVDAAGNLDYKALSYMFTHG 334
>ref|XP_003134933.1| PREDICTED: myosin regulatory light chain 2, atrial isoform-like [Sus
scrofa].
Length = 175
Score = 166 bits (419), Expect = 5e-41
Identities = 80/152 (52%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Frame = +2
Query: 959 QRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMM 1135
QR +SNVF+MF+Q+QIQEFKEAF+ IDQNRDG I K DL + + LGK N + LDAM+
Sbjct: 19 QRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLRETYSQLGKVNVPEEELDAML 78
Query: 1136 NEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRF 1315
E GPINFT+FLT+FGEKLNGTDPE+ I +AF FD G + +D ++LL T D+F
Sbjct: 79 QEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRLFDPSGKGVVNKDQFKQLLLTQADKF 138
Query: 1316 TDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
+ EV++++ P+D GN +Y I+ HG
Sbjct: 139 SPAEVEQMFALTPMDLAGNIDYKSLCYIITHG 170
>ref|XP_003124429.2| PREDICTED: myosin regulatory light chain 10-like [Sus scrofa].
Length = 140
Score = 144 bits (363), Expect = 2e-34
Identities = 71/105 (67%), Positives = 85/105 (80%), Gaps = 1/105 (0%)
Frame = +2
Query: 965 ATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNE 1141
A+SNVF+MFDQSQIQEFKEAF ++DQNRDGFIDKEDL D A+LG+ N + L+AM+ E
Sbjct: 35 ASSNVFSMFDQSQIQEFKEAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKE 94
Query: 1142 APGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQED 1276
APGPINFT+FLTMFGEKL GTDPE+ I +AF FD E G ++ D
Sbjct: 95 APGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDAEGKGFVKAD 139
>ref|XP_003360018.1| PREDICTED: myosin regulatory light polypeptide 9 isoform 2 [Sus
scrofa].
Length = 118
Score = 137 bits (345), Expect = 2e-32
Identities = 83/154 (53%), Positives = 88/154 (57%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLG D
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGFIHED------ 67
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
+ LT G++ DEE
Sbjct: 68 --------HLRELLTTMGDRFT---------------DEE-------------------- 84
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
VDE+YREAPIDKKGNFNY+EFTRILKHGA
Sbjct: 85 -----VDEMYREAPIDKKGNFNYVEFTRILKHGA 113
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,225,121
Number of extensions: 1013739
Number of successful extensions: 5335
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 5197
Number of HSP's successfully gapped: 38
Length of query: 594
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 489
Effective length of database: 8,729,747
Effective search space: 4268846283
Effective search space used: 4268846283
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008019
(1783 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075891.1| myosin regulatory light chain 12B [Mus musculus]. 316 3e-86
Alignment gi|NP_080340.2| myosin light chain, regulatory B-like [Mus musc... 311 1e-84
Alignment gi|NP_742116.1| myosin regulatory light polypeptide 9 [Mus musc... 302 6e-82
Alignment gi|NP_034991.3| myosin regulatory light chain 2, ventricular/ca... 181 1e-45
Alignment gi|NP_058034.1| myosin regulatory light chain 2, skeletal muscl... 176 5e-44
Alignment gi|NP_067624.2| myosin regulatory light chain 10 isoform 1 [Mus... 169 6e-42
Alignment gi|NP_075017.2| myosin regulatory light chain 2, atrial isoform... 161 2e-39
Alignment gi|NP_001078856.1| myosin regulatory light chain 10 isoform 2 [... 141 1e-33
Alignment gi|NP_031616.1| calmodulin [Mus musculus]. 125 1e-28
Alignment gi|NP_031615.1| calmodulin [Mus musculus]. 125 1e-28
>ref|NP_075891.1| myosin regulatory light chain 12B [Mus musculus].
Length = 172
Score = 316 bits (810), Expect = 3e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|NP_080340.2| myosin light chain, regulatory B-like [Mus musculus].
Length = 172
Score = 311 bits (797), Expect = 1e-84
Identities = 151/154 (98%), Positives = 152/154 (98%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS+GKNPTD YLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEA GTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEAIGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|NP_742116.1| myosin regulatory light polypeptide 9 [Mus musculus].
Length = 172
Score = 302 bits (773), Expect = 6e-82
Identities = 145/154 (94%), Positives = 150/154 (97%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YL+ M
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLEGM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEA+G I ED+LRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDE+YREAPIDKKGNFNY+EFTRILKHGA
Sbjct: 134 FTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGA 167
>ref|NP_034991.3| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Mus musculus].
Length = 166
Score = 181 bits (460), Expect = 1e-45
Identities = 86/154 (55%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDA 1129
R + +SNVF+MF+Q+QIQEFKEAF ++DQNRDGFIDK DL D A+LG+ N + +D
Sbjct: 9 RIEGGSSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDE 68
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
M+ EAPGPINFT+FLTMFGEKL G DPE+ I NAF FD E G+++ DY+RE+LTT +
Sbjct: 69 MIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGSLKADYVREMLTTQAE 128
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
RF+ EE+D+++ P D GN +Y I+ HG
Sbjct: 129 RFSKEEIDQMFAAFPPDVTGNLDYKNLVHIITHG 162
>ref|NP_058034.1| myosin regulatory light chain 2, skeletal muscle isoform [Mus
musculus].
Length = 169
Score = 176 bits (446), Expect = 5e-44
Identities = 88/149 (59%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Frame = +2
Query: 968 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 1144
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 15 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 74
Query: 1145 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 1324
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 75 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQE 134
Query: 1325 EVDELYREAPIDKKGNFNYIEFTRILKHG 1411
E+ ++ P D GN +Y ++ HG
Sbjct: 135 EIKNMWAAFPPDVGGNVDYKNICYVITHG 163
>ref|NP_067624.2| myosin regulatory light chain 10 isoform 1 [Mus musculus].
Length = 147
Score = 169 bits (428), Expect = 6e-42
Identities = 82/143 (57%), Positives = 105/143 (73%), Gaps = 1/143 (0%)
Frame = +2
Query: 986 MFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEAPGPINF 1162
MFDQSQIQEFKEAF ++DQNRDGFIDKEDL D A+LG+ N + L+AM+ EAPGPINF
Sbjct: 1 MFDQSQIQEFKEAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAPGPINF 60
Query: 1163 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELY 1342
T+FLTMFGEKL GTDPE+ I +AF FD E G ++ D+++E L T DRF++EEV +++
Sbjct: 61 TVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSEEEVKQMF 120
Query: 1343 REAPIDKKGNFNYIEFTRILKHG 1411
P D GN +Y ++ HG
Sbjct: 121 AAFPPDVCGNLDYRNLCYVITHG 143
>ref|NP_075017.2| myosin regulatory light chain 2, atrial isoform [Mus musculus].
Length = 175
Score = 161 bits (407), Expect = 2e-39
Identities = 78/152 (51%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Frame = +2
Query: 959 QRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMM 1135
QR +SNVF+MF+Q+QIQEFKEAF+ IDQNRDG I K DL + + LG+ + + LDAM+
Sbjct: 19 QRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLKETYSQLGRVSVPEEELDAML 78
Query: 1136 NEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRF 1315
E GPINFT+FLT+FGEKLNGTDPE+ I +AF FD G + ++ ++LL T D+F
Sbjct: 79 QEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGQGVVNKEEFKQLLMTQADKF 138
Query: 1316 TDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
+ EV++L+ P+D GN +Y I+ HG
Sbjct: 139 SPAEVEQLFALTPMDLAGNIDYKSLCYIITHG 170
>ref|NP_001078856.1| myosin regulatory light chain 10 isoform 2 [Mus musculus].
Length = 131
Score = 141 bits (356), Expect = 1e-33
Identities = 68/127 (53%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Frame = +2
Query: 1034 IDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDP 1210
+DQNRDGFIDKEDL D A+LG+ N + L+AM+ EAPGPINFT+FLTMFGEKL GTDP
Sbjct: 1 MDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAPGPINFTVFLTMFGEKLKGTDP 60
Query: 1211 EDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEF 1390
E+ I +AF FD E G ++ D+++E L T DRF++EEV +++ P D GN +Y
Sbjct: 61 EETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNL 120
Query: 1391 TRILKHG 1411
++ HG
Sbjct: 121 CYVITHG 127
>ref|NP_031616.1| calmodulin [Mus musculus].
Length = 149
Score = 125 bits (313), Expect = 1e-28
Identities = 64/140 (45%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Frame = +2
Query: 995 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GPINF 1162
+ QI EFKEAF++ D++ DG I ++L ++ SLG+NPT+A L M+NE G I+F
Sbjct: 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 66
Query: 1163 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELY 1342
FLTM K+ TD E+ IR AF FD++ G I LR ++T +G++ TDEEVDE+
Sbjct: 67 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 126
Query: 1343 REAPIDKKGNFNYIEFTRIL 1402
REA ID G NY EF +++
Sbjct: 127 READIDGDGQVNYEEFVQMM 146
>ref|NP_031615.1| calmodulin [Mus musculus].
Length = 149
Score = 125 bits (313), Expect = 1e-28
Identities = 64/140 (45%), Positives = 90/140 (64%), Gaps = 4/140 (2%)
Frame = +2
Query: 995 QSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAP----GPINF 1162
+ QI EFKEAF++ D++ DG I ++L ++ SLG+NPT+A L M+NE G I+F
Sbjct: 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 66
Query: 1163 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELY 1342
FLTM K+ TD E+ IR AF FD++ G I LR ++T +G++ TDEEVDE+
Sbjct: 67 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 126
Query: 1343 REAPIDKKGNFNYIEFTRIL 1402
REA ID G NY EF +++
Sbjct: 127 READIDGDGQVNYEEFVQMM 146
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,666,917
Number of extensions: 1240604
Number of successful extensions: 5842
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 5721
Number of HSP's successfully gapped: 45
Length of query: 594
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 487
Effective length of database: 12,403,707
Effective search space: 6040605309
Effective search space used: 6040605309
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008019
(1783 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138416.1| myosin regulatory light chain 12B [Homo sapi... 316 4e-86
Alignment gi|NP_291024.1| myosin regulatory light chain 12B [Homo sapiens]. 316 4e-86
Alignment gi|NP_001138417.1| myosin regulatory light chain 12B [Homo sapi... 316 4e-86
Alignment gi|NP_006462.1| myosin regulatory light chain 12A [Homo sapiens]. 314 1e-85
Alignment gi|NP_006088.2| myosin regulatory light polypeptide 9 isoform a... 300 3e-81
Alignment gi|XP_373042.2| PREDICTED: hypothetical protein LOC391722 [Homo... 285 1e-76
Alignment gi|XP_001717112.1| PREDICTED: hypothetical protein LOC391722 [H... 282 8e-76
Alignment gi|NP_000423.2| myosin regulatory light chain 2, ventricular/ca... 182 1e-45
Alignment gi|NP_002468.1| myosin light chain 5 [Homo sapiens]. 178 2e-44
Alignment gi|NP_037424.2| myosin regulatory light chain 2, skeletal muscl... 174 3e-43
>ref|NP_001138416.1| myosin regulatory light chain 12B [Homo sapiens].
Length = 172
Score = 316 bits (810), Expect = 4e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|NP_291024.1| myosin regulatory light chain 12B [Homo sapiens].
Length = 172
Score = 316 bits (810), Expect = 4e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|NP_001138417.1| myosin regulatory light chain 12B [Homo sapiens].
Length = 172
Score = 316 bits (810), Expect = 4e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 74 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 134 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 167
>ref|NP_006462.1| myosin regulatory light chain 12A [Homo sapiens].
Length = 171
Score = 314 bits (805), Expect = 1e-85
Identities = 153/154 (99%), Positives = 153/154 (99%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YLDAM
Sbjct: 13 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLDAM 72
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR
Sbjct: 73 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 132
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA
Sbjct: 133 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 166
>ref|NP_006088.2| myosin regulatory light polypeptide 9 isoform a [Homo sapiens].
Length = 172
Score = 300 bits (768), Expect = 3e-81
Identities = 144/154 (93%), Positives = 150/154 (97%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAM 1132
RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD YL+ M
Sbjct: 14 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDEYLEGM 73
Query: 1133 MNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDR 1312
M+EAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEA+G I ED+LRELLTTMGDR
Sbjct: 74 MSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDR 133
Query: 1313 FTDEEVDELYREAPIDKKGNFNYIEFTRILKHGA 1414
FTDEEVDE+YREAPIDKKGNFNY+EFTRILKHGA
Sbjct: 134 FTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGA 167
>ref|XP_373042.2| PREDICTED: hypothetical protein LOC391722 [Homo sapiens].
Length = 377
Score = 285 bits (729), Expect = 1e-76
Identities = 145/183 (79%), Positives = 149/183 (81%)
Frame = +2
Query: 863 RKSGFWFWYLAANXXXXXXXXXXXXXXXXXRPQRATSNVFAMFDQSQIQEFKEAFNMIDQ 1042
R F FWYL RPQ ATS VFA FDQSQIQEFKEAFNMIDQ
Sbjct: 191 RTGWFRFWYLVPELSNHHVEQKGKTTKK--RPQCATSKVFATFDQSQIQEFKEAFNMIDQ 248
Query: 1043 NRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVI 1222
NRDGFI KEDLH MLASLGKNPTDA LDA+MNEAPGPINFTM L MFG+KLNGTDPEDVI
Sbjct: 249 NRDGFISKEDLHGMLASLGKNPTDACLDAVMNEAPGPINFTMLLAMFGKKLNGTDPEDVI 308
Query: 1223 RNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 1402
RNAFACFDEEATGTIQEDYLRELLTT+GD+FTDEEVDELY EAPIDKKGNFNYIEFT IL
Sbjct: 309 RNAFACFDEEATGTIQEDYLRELLTTVGDQFTDEEVDELYTEAPIDKKGNFNYIEFTSIL 368
Query: 1403 KHG 1411
KHG
Sbjct: 369 KHG 371
>ref|XP_001717112.1| PREDICTED: hypothetical protein LOC391722 [Homo sapiens].
Length = 377
Score = 282 bits (721), Expect = 8e-76
Identities = 144/183 (78%), Positives = 148/183 (80%)
Frame = +2
Query: 863 RKSGFWFWYLAANXXXXXXXXXXXXXXXXXRPQRATSNVFAMFDQSQIQEFKEAFNMIDQ 1042
R F FWYL RPQ ATS VFA FDQSQIQEFKEAFNMIDQ
Sbjct: 191 RTGWFRFWYLVPELSNHHVEQKGKTTKK--RPQCATSKVFATFDQSQIQEFKEAFNMIDQ 248
Query: 1043 NRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVI 1222
NRDGFI KEDLH MLASLGKNPTDA LDA+MNEAPGPINFTM L MFG+KLNGTDPEDVI
Sbjct: 249 NRDGFISKEDLHGMLASLGKNPTDACLDAVMNEAPGPINFTMLLAMFGKKLNGTDPEDVI 308
Query: 1223 RNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 1402
RNAFACFDEEATGTIQEDYLRELLTT+GD+FTDEEVDELY EA IDKKGNFNYIEFT IL
Sbjct: 309 RNAFACFDEEATGTIQEDYLRELLTTVGDQFTDEEVDELYTEASIDKKGNFNYIEFTSIL 368
Query: 1403 KHG 1411
KHG
Sbjct: 369 KHG 371
>ref|NP_000423.2| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Homo sapiens].
Length = 166
Score = 182 bits (461), Expect = 1e-45
Identities = 87/150 (58%), Positives = 110/150 (73%), Gaps = 1/150 (0%)
Frame = +2
Query: 965 ATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNE 1141
A SNVF+MF+Q+QIQEFKEAF ++DQNRDGFIDK DL D A+LG+ N + +D M+ E
Sbjct: 13 ANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKE 72
Query: 1142 APGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTD 1321
APGPINFT+FLTMFGEKL G DPE+ I NAF FD E G ++ DY+RE+LTT +RF+
Sbjct: 73 APGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQAERFSK 132
Query: 1322 EEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
EEVD+++ P D GN +Y I+ HG
Sbjct: 133 EEVDQMFAAFPPDVTGNLDYKNLVHIITHG 162
>ref|NP_002468.1| myosin light chain 5 [Homo sapiens].
Length = 173
Score = 178 bits (451), Expect = 2e-44
Identities = 88/154 (57%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Frame = +2
Query: 953 RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDA 1129
R QRA+SNVF+ F+Q+QIQEFKEAF ++DQNRDGFIDKEDL D ASLGK N D LDA
Sbjct: 15 RAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDELDA 74
Query: 1130 MMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGD 1309
M+ EA GPINFTMFL +FGEKL+GTD E+ I NAF D + G I ++Y++ LL + D
Sbjct: 75 MLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQAD 134
Query: 1310 RFTDEEVDELYREAPIDKKGNFNYIEFTRILKHG 1411
+ T EEVD++++ A ID GN +Y + ++ HG
Sbjct: 135 KMTAEEVDQMFQFASIDVAGNLDYKALSYVITHG 168
>ref|NP_037424.2| myosin regulatory light chain 2, skeletal muscle isoform [Homo
sapiens].
Length = 169
Score = 174 bits (440), Expect = 3e-43
Identities = 87/149 (58%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Frame = +2
Query: 968 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 1144
+S+VF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 15 SSSVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 74
Query: 1145 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 1324
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 75 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQE 134
Query: 1325 EVDELYREAPIDKKGNFNYIEFTRILKHG 1411
E+ ++ P D GN +Y ++ HG
Sbjct: 135 EIKNMWAAFPPDVGGNVDYKNICYVITHG 163
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,974,616
Number of extensions: 1489761
Number of successful extensions: 7391
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 7237
Number of HSP's successfully gapped: 45
Length of query: 594
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 486
Effective length of database: 14,737,052
Effective search space: 7162207272
Effective search space used: 7162207272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008019
(1783 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1725 0.0
Sscrofa_Chr13 297 1e-77
Sscrofa_Chr17 157 3e-35
>Sscrofa_Chr06
|| Length = 157765593
Score = 1725 bits (870), Expect = 0.0
Identities = 889/898 (98%)
Strand = Plus / Minus
Query: 1 aaacaatatcgagaacaaaacttcaataatgtagcttcttggtttcctttgctttgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435989 aaacaatatcgagaacaaaacttcaataatgtagcttcttggtttcctttgctttgacaa 96435930
Query: 61 aaagcattacataacgtgcgcgcgctagttatgtgtgtgcctaagtttgtactgtcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435929 aaagcattacataacgtgcgcgcgctagttatgtgtgtgcctaagtttgtactgtcttta 96435870
Query: 121 atgacccaaaggaaagccagtaatttcattaaagctttcctgtgactgaaagggcttggc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435869 atgaaccaaaggaaagccagtaatttcattaaagctttcctgtgactgaaagggcttggc 96435810
Query: 181 ctggaaaggccgtaaatgttataatctgagggtgagagaggaggggtaggggcaaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435809 ctggaaaggccgtaaatgttataatctgagggtgagagaggaggggtaggggcaaatgat 96435750
Query: 241 ataacttggtctgagtgcagttttgaaaagaaagtgtttagcagcaggaagggtccgccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435749 ataacttggtctgagtgcagttttgaaaagaaagtgtttagcagcaggaagggtccgccc 96435690
Query: 301 agccgccgccctcttcccttccccactcttaatgtggagcgaagcacagaaaattgctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435689 agccgccgccctcttcccttccccactcttaatgtggagcgaagcacagaaaattgctca 96435630
Query: 361 ttttatctgaagttcataaaatgtaaccaggcgagctgtactttcacttcctaactctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435629 ttttatctgaagttcataaaatgtaaccaggcgagctgtactttcacttcctaactctgg 96435570
Query: 421 cagccctggggagcggcgcccggcgacccccaaacctctagggctcccgcccgcccgcgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435569 cagccctggggagcggcgcccggcgacccccaaacctctagggctcccgcccgcccgcgg 96435510
Query: 481 ggtcaaattccaggcccgcctcgcgccggccgcccgggaatgcggaagggccgtgggacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435509 ggtcaaattccaggcccgcctcgcgccggccgcccgggaatgcggaagggccgtgggacc 96435450
Query: 541 cgccgcggacggcgggggaggaggacgggctgcagggtcccaaccgcgccgcacccgctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435449 cgccgcggacggcgggggaggaggacgggctgcagggtcccaaccgcgccgcacccgctt 96435390
Query: 601 cataccgcgcgggcggtgggacccaactgaaacccagcccggggccggcggccccagccc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435389 cataccgcgcgggcggtgggacccaactgaaacccagcccggggccggcggccccagccc 96435330
Query: 661 gatccccggcggacaaggcagacgcgatcccctcccgcgcgagaactgtgaggcattnnn 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435329 gatccccggcggacaaggcagacgcgatcccctcccgcgcgagaactgtgaggcattccc 96435270
Query: 721 nnnnntggcagagttggatcccgccgcgccttccggtgcgccttccggttcgcctcccga 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435269 ccccctggcagagttggatcccgccgcgccttccggtgcgccttccggttcgcctcccga 96435210
Query: 781 ggcaggaagtgccggcgtcgccgctgttgctcccgcagttcctcccgcagctccgcactc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435209 ggcaggaagtgccggcgtcgccgctgttgctcccgcagttcctcccgcagctccgcactc 96435150
Query: 841 gtagcctccgctcgtttcgctcaggaagtccgggttctggttctggtatttggccgcg 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96435149 gtagcctccgctcgtttcgctcaggaagtccgggttctggttctggtatttggccgcg 96435092
Score = 854 bits (431), Expect = 0.0
Identities = 469/488 (96%)
Strand = Plus / Minus
Query: 1259 ggcaccattcaggaggactacctgagggagctgctgaccacgatgggagatcggttcaca 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96418719 ggcaccattcaggaggactacctgagggagctgctgaccacgatgggagatcggttcaca 96418660
Query: 1319 gatgaggaggtggatgagctgtacagagaagcacctattgacaaaaaggggaacttcaat 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96418659 gatgaggaggtggatgagctgtacagagaagcacctattgacaaaaaggggaacttcaat 96418600
Query: 1379 tacatcgagttcacccgcatccttaagcatggagcgaaagacaaagacgactgaaaaaac 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96418599 tacatcgagttcacccgcatccttaagcatggagcgaaagacaaagacgactgaaaaaac 96418540
Query: 1439 tttagctaagaccttctaattactttgtgttattccgttttatttcccagacactnnnnn 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96418539 tttagctaagaccttctaattactttgtgttattccgttttatttcccagacactccccc 96418480
Query: 1499 nnnnnnntgtagacctgttgcatgcaacttagtttcacagctttgcctcnnnnnnngatg 1558
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 96418479 caccccctgtagacctgttgcatgcaacttagtttcacagctttgcctctttttttgatg 96418420
Query: 1559 tatttattctagacctttctgccacttagcacttgtataatcagactacaaatggggatg 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96418419 tatttattctagacctttctgccacttagcacttgtataatcagactacaaatggggatg 96418360
Query: 1619 aggttgtaaattgtattgcaaaagcgattgcgaataaaaatcaacaaatgtgaaagccca 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96418359 aggttgtaaattgtattgcaaaagcgattgcgaataaaaatcaacaaatgtgaaagccca 96418300
Query: 1679 ggaaaatatatccggtatttctggttttgctggatttttacatttttatataataaaaat 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96418299 ggaaaatatatccggtatttctggttttgctggatttttacatttttatataataaaaat 96418240
Query: 1739 gctatttt 1746
||||||||
Sbjct: 96418239 gctatttt 96418232
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Minus
Query: 898 gaattaaactgccaccatgtcgagcaaaaaggcaaagaccaagaccaccaagaagcgccc 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96424536 gaattaaactgccaccatgtcgagcaaaaaggcaaagaccaagaccaccaagaagcgccc 96424477
Query: 958 ccagcgcgcaacttccaatgtgtttgccatgtttgaccagtcacagattcaggagttcaa 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96424476 ccagcgcgcaacttccaatgtgtttgccatgtttgaccagtcacagattcaggagttcaa 96424417
Query: 1018 ggaggccttcaacatgatcgatcagaacagagatggtttcatcgacaaggaagacttgca 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96424416 ggaggccttcaacatgatcgatcagaacagagatggtttcatcgacaaggaagacttgca 96424357
Query: 1078 tgacatgcttgcttctctagg 1098
|||||||||||||||||||||
Sbjct: 96424356 tgacatgcttgcttctctagg 96424336
Score = 343 bits (173), Expect = 2e-91
Identities = 179/181 (98%)
Strand = Plus / Minus
Query: 909 ccaccatgtcgagcaaaaaggcaaagaccaagaccaccaagaagcgcccccagcgcgcaa 968
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 96446014 ccaccatgtcgagcaaaagagcaaagaccaagaccaccaagaagcgcccccagcgcgcaa 96445955
Query: 969 cttccaatgtgtttgccatgtttgaccagtcacagattcaggagttcaaggaggccttca 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96445954 cttccaatgtgtttgccatgtttgaccagtcacagattcaggagttcaaggaggccttca 96445895
Query: 1029 acatgatcgatcagaacagagatggtttcatcgacaaggaagacttgcatgacatgcttg 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96445894 acatgatcgatcagaacagagatggtttcatcgacaaggaagacttgcatgacatgcttg 96445835
Query: 1089 c 1089
|
Sbjct: 96445834 c 96445834
Score = 331 bits (167), Expect = 8e-88
Identities = 176/179 (98%)
Strand = Plus / Minus
Query: 1262 accattcaggaggactacctgagggagctgctgaccacgatgggagatcggttcacagat 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96441478 accattcaggaggactacctgagggagctgctgaccacgatgggagatcggttcacagat 96441419
Query: 1322 gaggaggtggatgagctgtacagagaagcacctattgacaaaaaggggaacttcaattac 1381
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96441418 gaggaggtggacgagctgtacagagaagcacctattgacaaaaaggggaacttcaattac 96441359
Query: 1382 atcgagttcacccgcatccttaagcatggagcgaaagacaaagacgactgaaaaaactt 1440
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 96441358 atcgagtttacccgcatccttaagcatggagcgaaagacaaagatgactgaaaaaactt 96441300
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1095 tagggaagaacccaactgacgcatacctcgacgccatgatgaacgaggctccggggccca 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96420294 tagggaagaacccaactgacgcatacctcgacgccatgatgaacgaggctccggggccca 96420235
Query: 1155 ttaacttcaccatgttcctcaccatgtttggggagaagttaaatggcacagacccagaag 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96420234 ttaacttcaccatgttcctcaccatgtttggggagaagttaaatggcacagacccagaag 96420175
Query: 1215 acgtcatcagaaacgcttttgcttgctttgacgaagaagcaactgg 1260
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96420174 acgtcatcagaaacgcttttgcttgctttgacgaagaagcaactgg 96420129
Score = 163 bits (82), Expect = 4e-37
Identities = 121/134 (90%)
Strand = Plus / Minus
Query: 1127 gccatgatgaacgaggctccggggcccattaacttcaccatgttcctcaccatgtttggg 1186
||||||||||| |||||||| || ||||| || || |||||||| ||||| ||||||||
Sbjct: 96445306 gccatgatgaatgaggctccaggtcccataaattttaccatgtttctcacaatgtttggt 96445247
Query: 1187 gagaagttaaatggcacagacccagaagacgtcatcagaaacgcttttgcttgctttgac 1246
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 96445246 gaaaagttaaatggcacagacccagaagatgtcatcagaaatgcttttgcttgctttgat 96445187
Query: 1247 gaagaagcaactgg 1260
||||||||||||||
Sbjct: 96445186 gaagaagcaactgg 96445173
>Sscrofa_Chr13
|| Length = 218635234
Score = 297 bits (150), Expect = 1e-77
Identities = 312/365 (85%), Gaps = 7/365 (1%)
Strand = Plus / Minus
Query: 872 gggttctggttctggtatttggccgcgaattaaactgccaccatgtcgagcaaaaaggca 931
||||||||||| ||| || ||||| ||||||||||| ||||||||| ||||||||||||
Sbjct: 38500013 gggttctggttttggcatctggccaagaattaaactgtcaccatgtcaagcaaaaaggca 38499954
Query: 932 aagaccaagaccaccaagaagcgcccccagcgcgcaacttccaat-gtgtttgccatgtt 990
||||||||||||||||||||| |||| |||| | |||| |||| | | | | || ||||
Sbjct: 38499953 aagaccaagaccaccaagaagtgccctcagcactcaacatccagttgcgctcaccgtgtt 38499894
Query: 991 tgaccagtcacagattcaggagttcaaggaggccttcaacatgatcgatcagaacagaga 1050
|||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||| |
Sbjct: 38499893 tgaccactcacagattcaggagttcaaggaggtgttcaacataatcgatcaaaacagaaa 38499834
Query: 1051 tggtttcatcgacaaggaagacttgcatgacatgcttgcttctctagggaagaacccaac 1110
|| |||||| |||||||||| ||||||| ||||||||||||| |||||||||||||||
Sbjct: 38499833 tgttttcattaacaaggaagatttgcatgctatgcttgcttctcaagggaagaacccaac 38499774
Query: 1111 tgacgcatacctcgacgccatgatgaacgaggctccggggcccattaacttcaccatgtt 1170
|| |||||||||| || ||||||||||| | | ||||||| |||||||||||||
Sbjct: 38499773 tggcgcatacctcaacaccatgatgaacaa------gaggcccataaacttcaccatgtg 38499720
Query: 1171 cctcaccatgtttggggagaagttaaatggcacagacccagaagacgtcatcagaaacgc 1230
||||||| ||||| || |||| |||||||||||||||| |||| | ||||||||||| ||
Sbjct: 38499719 cctcaccgtgtttaggaagaaattaaatggcacagacctagaaaatgtcatcagaaatgc 38499660
Query: 1231 ttttg 1235
|||||
Sbjct: 38499659 ttttg 38499655
Score = 192 bits (97), Expect = 5e-46
Identities = 166/189 (87%)
Strand = Plus / Minus
Query: 1558 gtatttattctagacctttctgccacttagcacttgtataatcagactacaaatggggat 1617
|||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||
Sbjct: 38499023 gtatttattctagacctttctgccacttagcacttgtatagtcagactgcacttggggat 38498964
Query: 1618 gaggttgtaaattgtattgcaaaagcgattgcgaataaaaatcaacaaatgtgaaagccc 1677
|||||| || |||||| ||||| |||| |||||||||||| |||||||||||||||
Sbjct: 38498963 gaggttatagattgtaacaaaaaagagattatgaataaaaatcagcaaatgtgaaagccc 38498904
Query: 1678 aggaaaatatatccggtatttctggttttgctggatttttacatttttatataataaaaa 1737
|||||||| |||| ||||||||||| |||| | || |||| |||||||||||||||||
Sbjct: 38498903 aggaaaatgtatctggtatttctgggtttgttccatatttatatttttatataataaaag 38498844
Query: 1738 tgctatttt 1746
|||||||||
Sbjct: 38498843 tgctatttt 38498835
Score = 172 bits (87), Expect = 4e-40
Identities = 164/188 (87%), Gaps = 5/188 (2%)
Strand = Plus / Minus
Query: 1559 tatttattctagacctttctgccacttagcacttgtataatcagactacaaatggggatg 1618
|||||||||||||||||| |||| ||||| || |||||||||||||||| ||||||||||
Sbjct: 181553712 tatttattctagacctttatgccgcttagtacatgtataatcagactactaatggggatg 181553653
Query: 1619 aggttgtaaattgtattgcaaaagcgattgcgaataaaaatcaacaaatgtgaaagccca 1678
|||||||||||||||||| ||| |||| ||||||||||||||| || |||| | |||
Sbjct: 181553652 aggttgtaaattgtattg---aagaaattgtgaataaaaatcaacagatatgaatgtcca 181553596
Query: 1679 ggaaaatatatccggtatttctggttttgctggatttttacatttttatataataaaaat 1738
|||| |||| | ||||||| |||||||||||||||||| || ||| ||||||||||||
Sbjct: 181553595 ggaaggtatagctggtatttatggttttgctggatttttgca--tttctataataaaaat 181553538
Query: 1739 gctatttt 1746
||||||||
Sbjct: 181553537 gctatttt 181553530
Score = 117 bits (59), Expect = 2e-23
Identities = 212/261 (81%), Gaps = 19/261 (7%)
Strand = Plus / Minus
Query: 1223 agaaacgcttttgcttgctttgacgaagaagcaactggcaccattc-aggaggactacct 1281
||||| ||||||| ||||||||| ||||||||| |||||||||| | ||||||| |||||
Sbjct: 38499363 agaaatgcttttgtttgctttgaggaagaagcagctggcaccatgccaggaggattacct 38499304
Query: 1282 gagggagctgctgaccacgatgggagatcggttcacagatgaggaggtggatgagctgta 1341
||| |||||||||||||| || | ||||||||||||| || || || ||||| |
Sbjct: 38499303 gagagagctgctgaccac------ag-ttggttcacagatgacgaagtagaccagctgga 38499251
Query: 1342 cagagaagcacctattgacaaaaaggggaacttcaattacatcgagttcacccgcatcct 1401
||||||||||||| ||||||||||||| | |||| |||||| |||||||| | ||||||
Sbjct: 38499250 cagagaagcaccttttgacaaaaagggagatttcagttacattgagttcacacacatcct 38499191
Query: 1402 taagcatggagcgaaagacaaagacgactgaaaaaac--tttagctaagaccttctaatt 1459
||| || ||||| ||| |||||||| ||| |||||||||||||||| ||||
Sbjct: 38499190 taaacagggagc---------agatgactgaaagaactttttagctaagaccttccaatt 38499140
Query: 1460 actttgtgttattccgtttta 1480
||||||| ||| || ||||||
Sbjct: 38499139 actttgtcttactctgtttta 38499119
>Sscrofa_Chr17
|| Length = 69701581
Score = 157 bits (79), Expect = 3e-35
Identities = 133/151 (88%)
Strand = Plus / Plus
Query: 936 ccaagaccaccaagaagcgcccccagcgcgcaacttccaatgtgtttgccatgtttgacc 995
||||||||||||||||||| || ||| | || || |||||||| || || ||||| ||||
Sbjct: 45268152 ccaagaccaccaagaagcggccacagagggccacatccaatgtcttcgcgatgttcgacc 45268211
Query: 996 agtcacagattcaggagttcaaggaggccttcaacatgatcgatcagaacagagatggtt 1055
|||| ||||| |||||||| ||||||||||||||||||||||| |||||| ||||||| |
Sbjct: 45268212 agtcccagatccaggagtttaaggaggccttcaacatgatcgaccagaaccgagatggct 45268271
Query: 1056 tcatcgacaaggaagacttgcatgacatgct 1086
|||| |||||||| |||||||||||||||||
Sbjct: 45268272 tcattgacaaggaggacttgcatgacatgct 45268302
Score = 117 bits (59), Expect = 2e-23
Identities = 122/143 (85%)
Strand = Plus / Plus
Query: 1100 aagaacccaactgacgcatacctcgacgccatgatgaacgaggctccggggcccattaac 1159
|||||||| || |||| ||||| || | |||||||| |||||| ||||||||||| |||
Sbjct: 45270238 aagaaccccacggacgagtacctggagggcatgatgagcgaggccccggggcccatcaac 45270297
Query: 1160 ttcaccatgttcctcaccatgtttggggagaagttaaatggcacagacccagaagacgtc 1219
||||||||||||||||||||||||||||||||| | || ||||| ||||| || |||||
Sbjct: 45270298 ttcaccatgttcctcaccatgtttggggagaagctgaacggcacggaccccgaggacgtg 45270357
Query: 1220 atcagaaacgcttttgcttgctt 1242
||| | ||||| ||||| |||||
Sbjct: 45270358 atccgcaacgcctttgcctgctt 45270380
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,662,009
Number of extensions: 488
Number of successful extensions: 488
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 18
Length of query: 1783
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1761
Effective length of database: 2,808,408,574
Effective search space: 4945607498814
Effective search space used: 4945607498814
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)