Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008022
(1057 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074982.1| phosphoribosyl pyrophosphate synthase-associ... 504 e-143
Alignment gi|XP_001790357.1| PREDICTED: phosphoribosyl pyrophosphate synt... 380 e-106
Alignment gi|NP_001070325.1| phosphoribosyl pyrophosphate synthase-associ... 379 e-105
Alignment gi|NP_001107624.1| ribose-phosphate pyrophosphokinase 2 [Bos ta... 186 2e-47
Alignment gi|NP_001039654.1| ribose-phosphate pyrophosphokinase 1 [Bos ta... 186 4e-47
Alignment gi|NP_001095953.1| ribose-phosphate pyrophosphokinase 3 [Bos ta... 179 5e-45
Alignment gi|XP_002700484.1| PREDICTED: PRPS2 protein-like [Bos taurus]. 98 1e-20
>ref|NP_001074982.1| phosphoribosyl pyrophosphate synthase-associated protein 2 [Bos
taurus].
Length = 369
Score = 504 bits (1298), Expect = e-143
Identities = 257/270 (95%), Positives = 261/270 (96%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPE EA MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR
Sbjct: 1 MFCVAPPESEAKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GV+PYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVVPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRSAAAIHPS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSAAAIHPS 240
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
LEIPMLIP+EKPPITVV D G AIIVDD
Sbjct: 241 LEIPMLIPKEKPPITVVGDVGGRIAIIVDD 270
>ref|XP_001790357.1| PREDICTED: phosphoribosyl pyrophosphate synthetase-associated protein
1 [Bos taurus].
Length = 385
Score = 380 bits (977), Expect = e-106
Identities = 191/266 (71%), Positives = 224/266 (84%)
Frame = +3
Query: 231 APPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQ 410
A P MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+IQ
Sbjct: 22 ACPAARPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIQ 81
Query: 411 ESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGS 590
ESVRG+D+FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGS
Sbjct: 82 ESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGS 141
Query: 591 IVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAV 770
IV KLLASM+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAV
Sbjct: 142 IVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAV 201
Query: 771 IVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIP 950
IVAKSP +AKRAQS+AERLRLG+AVIHGEAQ AE D DGRHSPPMV++ A +HP LE+P
Sbjct: 202 IVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCAEMDMDDGRHSPPMVKN-ATVHPGLELP 260
Query: 951 MLIPEEKPPITVVRDXGRXDAIIVDD 1028
+++ +EKPPITVV D G AIIVDD
Sbjct: 261 LMMAKEKPPITVVGDVGGRIAIIVDD 286
>ref|NP_001070325.1| phosphoribosyl pyrophosphate synthase-associated protein 1 [Bos
taurus].
Length = 356
Score = 379 bits (972), Expect = e-105
Identities = 189/258 (73%), Positives = 222/258 (86%)
Frame = +3
Query: 255 MNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDV 434
MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+IQESVRG+D+
Sbjct: 1 MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIQESVRGQDI 60
Query: 435 FIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLAS 614
FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGSIV KLLAS
Sbjct: 61 FIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLAS 120
Query: 615 MMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPAS 794
M+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAVIVAKSP +
Sbjct: 121 MLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDA 180
Query: 795 AKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIPMLIPEEKP 974
AKRAQS+AERLRLG+AVIHGEAQ AE D DGRHSPPMV++ A +HP LE+P+++ +EKP
Sbjct: 181 AKRAQSYAERLRLGLAVIHGEAQCAEMDMDDGRHSPPMVKN-ATVHPGLELPLMMAKEKP 239
Query: 975 PITVVRDXGRXDAIIVDD 1028
PITVV D G AIIVDD
Sbjct: 240 PITVVGDVGGRIAIIVDD 257
>ref|NP_001107624.1| ribose-phosphate pyrophosphokinase 2 [Bos taurus].
Length = 321
Score = 186 bits (473), Expect = 2e-47
Identities = 99/202 (49%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Frame = +3
Query: 276 LVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVS 455
+VLFS +S+ +LS+++A+RLG+E+GKV + ++ET V+I ESVRG+DV+IIQ+
Sbjct: 4 IVLFSGSSHQ---DLSQRVADRLGLELGKVITKKFSNQETSVEIGESVRGEDVYIIQSGC 60
Query: 456 KDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK----RGSIVSKLLASMMC 623
++N +MELLIM+ ACK + + VT VIP FPY++Q K K R I +KL+A+M+
Sbjct: 61 GEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKVSASRAPISAKLVANMLS 120
Query: 624 KAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKR 803
AG H+ITMDLH +IQGFF+IPVDNL A P +LQ+I+E I D++N +IV+ AKR
Sbjct: 121 VAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENITDWKNCIIVSPDAGGAKR 180
Query: 804 AQSFAERLRLGIAVIHGEAQDA 869
S A+RL + A+IH E + A
Sbjct: 181 VTSIADRLNVEFALIHKERKKA 202
>ref|NP_001039654.1| ribose-phosphate pyrophosphokinase 1 [Bos taurus].
Length = 318
Score = 186 bits (471), Expect = 4e-47
Identities = 98/192 (51%), Positives = 136/192 (70%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KIA+RLG+E+GKV + ++ET V+I ESVRG+DV+I+Q+ ++N +
Sbjct: 8 SGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACK + A VT VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E I ++RN IV+ AKR S A+RL +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKERKKA 199
>ref|NP_001095953.1| ribose-phosphate pyrophosphokinase 3 [Bos taurus].
Length = 329
Score = 179 bits (453), Expect = 5e-45
Identities = 95/196 (48%), Positives = 136/196 (69%), Gaps = 1/196 (0%)
Frame = +3
Query: 267 KGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQ 446
K + +FS S+ +LS+KIA+RLG+E+GKV + ++ET V+I ESV+G+DV+I+Q
Sbjct: 12 KPNIKIFSGRSHQ---DLSQKIADRLGLELGKVVTKKLSNQETCVEIGESVQGEDVYIVQ 68
Query: 447 TVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKM-RKRGSIVSKLLASMMC 623
+ ++N +MELLIM+ ACK + A VT VIP FPY++Q K R I +KL+A M+
Sbjct: 69 SGCGEINDNLMELLIMINACKIASAGRVTAVIPCFPYARQDKRGESRAPISAKLVADMLS 128
Query: 624 KAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKR 803
AG H+ITMDLH +IQGFF+IPVDNL A P +L++I+E+I D+R+ IV+ KR
Sbjct: 129 TAGADHIITMDLHASQIQGFFDIPVDNLCAEPAVLKWIKEQISDWRSCTIVSPDAGEVKR 188
Query: 804 AQSFAERLRLGIAVIH 851
A S A+RL + A+IH
Sbjct: 189 ATSIADRLNVDFALIH 204
>ref|XP_002700484.1| PREDICTED: PRPS2 protein-like [Bos taurus].
Length = 349
Score = 98.2 bits (243), Expect = 1e-20
Identities = 52/110 (47%), Positives = 77/110 (70%)
Frame = +3
Query: 252 TMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKD 431
T T +VLFS +S+ +LS+++A+RLG+E+GKV + ++ET V+I ESVRG+D
Sbjct: 242 TPRPTMPNIVLFSGSSHQ---DLSQRVADRLGLELGKVITKKFSNQETSVEIGESVRGED 298
Query: 432 VFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK 581
V+IIQ+ ++N +MELLIM+ ACK + + VT VIP FPY++Q K K
Sbjct: 299 VYIIQSGCGEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDK 348
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,200,025
Number of extensions: 912755
Number of successful extensions: 3688
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3664
Number of HSP's successfully gapped: 7
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008022
(1057 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546654.2| PREDICTED: similar to phosphoribosyl pyrophosph... 502 e-142
Alignment gi|XP_864392.1| PREDICTED: similar to phosphoribosyl pyrophosph... 489 e-138
Alignment gi|XP_864371.1| PREDICTED: similar to phosphoribosyl pyrophosph... 472 e-133
Alignment gi|XP_864306.1| PREDICTED: similar to phosphoribosyl pyrophosph... 467 e-132
Alignment gi|XP_864326.1| PREDICTED: similar to phosphoribosyl pyrophosph... 463 e-130
Alignment gi|XP_864351.1| PREDICTED: similar to phosphoribosyl pyrophosph... 460 e-130
Alignment gi|XP_864284.1| PREDICTED: similar to phosphoribosyl pyrophosph... 460 e-130
Alignment gi|XP_858052.1| PREDICTED: similar to Phosphoribosyl pyrophosph... 377 e-105
Alignment gi|XP_849109.1| PREDICTED: similar to Phosphoribosyl pyrophosph... 377 e-105
Alignment gi|XP_858137.1| PREDICTED: similar to Phosphoribosyl pyrophosph... 368 e-102
>ref|XP_546654.2| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 1 [Canis
familiaris].
Length = 369
Score = 502 bits (1292), Expect = e-142
Identities = 256/270 (94%), Positives = 260/270 (96%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS AAIHPS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPS 240
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
LEIPMLIP+EKPPITVV D G AIIVDD
Sbjct: 241 LEIPMLIPKEKPPITVVGDVGGRIAIIVDD 270
>ref|XP_864392.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 10 [Canis
familiaris].
Length = 388
Score = 489 bits (1259), Expect = e-138
Identities = 255/289 (88%), Positives = 260/289 (89%), Gaps = 19/289 (6%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS AAIHPS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPS 240
Query: 939 LEI-------------------PMLIPEEKPPITVVRDXGRXDAIIVDD 1028
LEI P+LIP+EKPPITVV D G AIIVDD
Sbjct: 241 LEIPSKWAGPSLSLPSLLLGLTPLLIPKEKPPITVVGDVGGRIAIIVDD 289
>ref|XP_864371.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 9 [Canis
familiaris].
Length = 381
Score = 472 bits (1215), Expect = e-133
Identities = 247/282 (87%), Positives = 255/282 (90%), Gaps = 12/282 (4%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRS------- 917
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSRQRQREK 240
Query: 918 -AAAIHPSLEI----PMLIPEEKPPITVVRDXGRXDAIIVDD 1028
P++ + P+LIP+EKPPITVV D G AIIVDD
Sbjct: 241 QTPCREPNVGLDPGSPVLIPKEKPPITVVGDVGGRIAIIVDD 282
>ref|XP_864306.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 6 [Canis
familiaris].
Length = 373
Score = 467 bits (1202), Expect = e-132
Identities = 245/275 (89%), Positives = 252/275 (91%), Gaps = 5/275 (1%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPM S + + S
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPM-DSKSETYES 239
Query: 939 LEIP-----MLIPEEKPPITVVRDXGRXDAIIVDD 1028
P +LIP+EKPPITVV D G AIIVDD
Sbjct: 240 RGKPVHTAFLLIPKEKPPITVVGDVGGRIAIIVDD 274
>ref|XP_864326.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 7 [Canis
familiaris].
Length = 401
Score = 463 bits (1192), Expect = e-130
Identities = 249/302 (82%), Positives = 255/302 (84%), Gaps = 32/302 (10%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPM--VRSA---- 920
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPM VRS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVLVRSGCQGG 240
Query: 921 ---AAIHPSLE-----------------------IPMLIPEEKPPITVVRDXGRXDAIIV 1022
A + P E P+LIP+EKPPITVV D G AIIV
Sbjct: 241 SWEACVWPERERQRQRQREKQTPCREPNVGLDPGSPVLIPKEKPPITVVGDVGGRIAIIV 300
Query: 1023 DD 1028
DD
Sbjct: 301 DD 302
>ref|XP_864351.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 8 [Canis
familiaris].
Length = 363
Score = 460 bits (1184), Expect = e-130
Identities = 240/270 (88%), Positives = 248/270 (91%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPM ++
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPM-----QLYHF 235
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
+P + +EKPPITVV D G AIIVDD
Sbjct: 236 TFLPAKV-KEKPPITVVGDVGGRIAIIVDD 264
>ref|XP_864284.1| PREDICTED: similar to phosphoribosyl pyrophosphate
synthetase-associated protein 2 isoform 5 [Canis
familiaris].
Length = 340
Score = 460 bits (1184), Expect = e-130
Identities = 240/270 (88%), Positives = 248/270 (91%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPM ++
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPM-----QLYHF 235
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
+P + +EKPPITVV D G AIIVDD
Sbjct: 236 TFLPAKV-KEKPPITVVGDVGGRIAIIVDD 264
>ref|XP_858052.1| PREDICTED: similar to Phosphoribosyl pyrophosphate
synthetase-associated protein 1 (PRPP
synthetase-associated protein 1) (39 kDa
phosphoribosypyrophosphate synthetase-associated protein)
(PAP39) isoform 4 [Canis familiaris].
Length = 362
Score = 377 bits (969), Expect = e-105
Identities = 189/266 (71%), Positives = 223/266 (83%)
Frame = +3
Query: 231 APPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQ 410
A P MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+
Sbjct: 22 ARPAARPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIK 81
Query: 411 ESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGS 590
ESVRG+D+FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGS
Sbjct: 82 ESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGS 141
Query: 591 IVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAV 770
IV KLLASM+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAV
Sbjct: 142 IVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAV 201
Query: 771 IVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIP 950
IVAKSP +AKRAQS+AERLRLG+AVIHGEAQ E D DGRHSPPMV++ A +HP LE+P
Sbjct: 202 IVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKN-ATVHPGLELP 260
Query: 951 MLIPEEKPPITVVRDXGRXDAIIVDD 1028
+++ +EKPPITVV D G AIIVDD
Sbjct: 261 LMMAKEKPPITVVGDVGGRIAIIVDD 286
>ref|XP_849109.1| PREDICTED: similar to Phosphoribosyl pyrophosphate
synthetase-associated protein 1 (PRPP
synthetase-associated protein 1) (39 kDa
phosphoribosypyrophosphate synthetase-associated protein)
(PAP39) isoform 1 [Canis familiaris].
Length = 385
Score = 377 bits (969), Expect = e-105
Identities = 189/266 (71%), Positives = 223/266 (83%)
Frame = +3
Query: 231 APPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQ 410
A P MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+
Sbjct: 22 ARPAARPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIK 81
Query: 411 ESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGS 590
ESVRG+D+FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGS
Sbjct: 82 ESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGS 141
Query: 591 IVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAV 770
IV KLLASM+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAV
Sbjct: 142 IVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAV 201
Query: 771 IVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIP 950
IVAKSP +AKRAQS+AERLRLG+AVIHGEAQ E D DGRHSPPMV++ A +HP LE+P
Sbjct: 202 IVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKN-ATVHPGLELP 260
Query: 951 MLIPEEKPPITVVRDXGRXDAIIVDD 1028
+++ +EKPPITVV D G AIIVDD
Sbjct: 261 LMMAKEKPPITVVGDVGGRIAIIVDD 286
>ref|XP_858137.1| PREDICTED: similar to Phosphoribosyl pyrophosphate
synthetase-associated protein 1 (PRPP
synthetase-associated protein 1) (39 kDa
phosphoribosypyrophosphate synthetase-associated protein)
(PAP39) isoform 6 [Canis familiaris].
Length = 398
Score = 368 bits (945), Expect = e-102
Identities = 189/279 (67%), Positives = 223/279 (79%), Gaps = 13/279 (4%)
Frame = +3
Query: 231 APPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQ 410
A P MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+
Sbjct: 22 ARPAARPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIK 81
Query: 411 ESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGS 590
ESVRG+D+FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGS
Sbjct: 82 ESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGS 141
Query: 591 IVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAV 770
IV KLLASM+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAV
Sbjct: 142 IVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAV 201
Query: 771 IVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIP 950
IVAKSP +AKRAQS+AERLRLG+AVIHGEAQ E D DGRHSPPMV++ A +HP LE+P
Sbjct: 202 IVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKN-ATVHPGLELP 260
Query: 951 -------------MLIPEEKPPITVVRDXGRXDAIIVDD 1028
+++ +EKPPITVV D G AIIVDD
Sbjct: 261 CKISSIFPQLTLILMMAKEKPPITVVGDVGGRIAIIVDD 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,757,406
Number of extensions: 913924
Number of successful extensions: 3667
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 3628
Number of HSP's successfully gapped: 31
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008022
(1057 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131222.1| PREDICTED: phosphoribosyl pyrophosphate synt... 378 e-105
Alignment gi|XP_003361489.1| PREDICTED: phosphoribosyl pyrophosphate synt... 273 1e-73
Alignment gi|XP_003358354.1| PREDICTED: phosphoribosyl pyrophosphate synt... 273 1e-73
Alignment gi|XP_003132086.2| PREDICTED: phosphoribosyl pyrophosphate synt... 273 1e-73
Alignment gi|NP_001230730.1| phosphoribosyl pyrophosphate synthetase 2 [S... 186 1e-47
Alignment gi|XP_003135349.1| PREDICTED: ribose-phosphate pyrophosphokinas... 186 2e-47
Alignment gi|XP_003130238.1| PREDICTED: ribose-phosphate pyrophosphokinas... 182 4e-46
Alignment gi|XP_003132090.2| PREDICTED: hypothetical protein LOC100511960... 132 2e-31
>ref|XP_003131222.1| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein 1
[Sus scrofa].
Length = 385
Score = 378 bits (971), Expect = e-105
Identities = 190/266 (71%), Positives = 224/266 (84%)
Frame = +3
Query: 231 APPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQ 410
A P MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+
Sbjct: 22 ACPASRPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIK 81
Query: 411 ESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGS 590
ESVRG+D+FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGS
Sbjct: 82 ESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGS 141
Query: 591 IVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAV 770
IV KLLASM+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAV
Sbjct: 142 IVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAV 201
Query: 771 IVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIP 950
IVAKSP +AKRAQS+AERLRLG+AVIHGEAQ AE D DGRHSPPMV++ A +HP LE+P
Sbjct: 202 IVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKN-ATVHPGLELP 260
Query: 951 MLIPEEKPPITVVRDXGRXDAIIVDD 1028
+++ +EKPPITVV D G AIIVDD
Sbjct: 261 LMMAKEKPPITVVGDVGGRIAIIVDD 286
>ref|XP_003361489.1| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein
2-like [Sus scrofa].
Length = 175
Score = 273 bits (698), Expect = 1e-73
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR
Sbjct: 1 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAG 632
KRGSIVSKLLASMMCKAG
Sbjct: 121 KRGSIVSKLLASMMCKAG 138
>ref|XP_003358354.1| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein
2-like isoform 2 [Sus scrofa].
Length = 147
Score = 273 bits (698), Expect = 1e-73
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR
Sbjct: 1 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAG 632
KRGSIVSKLLASMMCKAG
Sbjct: 121 KRGSIVSKLLASMMCKAG 138
>ref|XP_003132086.2| PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein
2-like isoform 1 [Sus scrofa].
Length = 147
Score = 273 bits (698), Expect = 1e-73
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR
Sbjct: 1 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAG 632
KRGSIVSKLLASMMCKAG
Sbjct: 121 KRGSIVSKLLASMMCKAG 138
>ref|NP_001230730.1| phosphoribosyl pyrophosphate synthetase 2 [Sus scrofa].
Length = 318
Score = 186 bits (473), Expect = 1e-47
Identities = 98/199 (49%), Positives = 142/199 (71%), Gaps = 1/199 (0%)
Frame = +3
Query: 276 LVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVS 455
+VLFS +S+ +LS+++A+RLG+E+GKV + ++ET V+I ESVRG+DV+IIQ+
Sbjct: 4 IVLFSGSSHQ---DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGC 60
Query: 456 KDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAG 632
++N +MELLIM+ ACK + + VT VIP FPY++Q K K R I +KL+A+M+ AG
Sbjct: 61 GEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAG 120
Query: 633 LTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQS 812
H+ITMDLH +IQGFF+IP+DNL A P +LQ+I+E I ++RN +IV+ AKR S
Sbjct: 121 ADHIITMDLHASQIQGFFDIPMDNLYAEPAVLQWIRENIAEWRNCIIVSPDAGGAKRVTS 180
Query: 813 FAERLRLGIAVIHGEAQDA 869
A+RL + A+IH E + A
Sbjct: 181 IADRLNVEFALIHKERKKA 199
>ref|XP_003135349.1| PREDICTED: ribose-phosphate pyrophosphokinase 1-like [Sus scrofa].
Length = 318
Score = 186 bits (471), Expect = 2e-47
Identities = 98/192 (51%), Positives = 136/192 (70%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KIA+RLG+E+GKV + ++ET V+I ESVRG+DV+I+Q+ ++N +
Sbjct: 8 SGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACK + A VT VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E I ++RN IV+ AKR S A+RL +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKERKKA 199
>ref|XP_003130238.1| PREDICTED: ribose-phosphate pyrophosphokinase 1-like [Sus scrofa].
Length = 318
Score = 182 bits (461), Expect = 4e-46
Identities = 97/192 (50%), Positives = 136/192 (70%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KIA RLG+++GKV + ++ET V+I ESVRG+DV+I+Q+ ++N +
Sbjct: 8 SGSSHQDLSQKIAGRLGLKLGKVVTKKFSNQETCVEIGESVRGEDVYIMQSGCGEINDNL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACKT+ A VT VIP FPY++Q K K + I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKTASASRVTAVIPCFPYARQDKKDKNQAPISAKLVANMLSVAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E I ++RN IV+ AKR S A+RL +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPAVLKWIKENISEWRNCTIVSPDADGAKRVTSIADRLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKEKKKA 199
>ref|XP_003132090.2| PREDICTED: hypothetical protein LOC100511960 [Sus scrofa].
Length = 459
Score = 132 bits (331), Expect(2) = 2e-31
Identities = 68/75 (90%), Positives = 69/75 (92%)
Frame = +3
Query: 804 AQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIPMLIPEEKPPIT 983
AQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRSAAAIHPSLEIPMLIP+EKPPIT
Sbjct: 337 AQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSAAAIHPSLEIPMLIPKEKPPIT 396
Query: 984 VVRDXGRXDAIIVDD 1028
VV D G AIIVDD
Sbjct: 397 VVGDVGGRIAIIVDD 411
Score = 22.3 bits (46), Expect(2) = 2e-31
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +2
Query: 1028 LIDDVDSFLA 1057
+IDDVDSFLA
Sbjct: 412 IIDDVDSFLA 421
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,636,352
Number of extensions: 634710
Number of successful extensions: 2342
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2331
Number of HSP's successfully gapped: 9
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008022
(1057 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157714.1| phosphoribosyl pyrophosphate synthase-associ... 501 e-142
Alignment gi|NP_659055.1| phosphoribosyl pyrophosphate synthase-associate... 501 e-142
Alignment gi|NP_080640.1| phosphoribosyl pyrophosphate synthase-associate... 377 e-105
Alignment gi|NP_001157716.1| phosphoribosyl pyrophosphate synthase-associ... 343 2e-94
Alignment gi|NP_001157715.1| phosphoribosyl pyrophosphate synthase-associ... 343 2e-94
Alignment gi|NP_080938.1| ribose-phosphate pyrophosphokinase 2 [Mus muscu... 187 9e-48
Alignment gi|NP_001032835.2| hypothetical protein LOC328099 [Mus musculus]. 186 3e-47
Alignment gi|NP_067438.1| ribose-phosphate pyrophosphokinase 1 [Mus muscu... 186 3e-47
Alignment gi|NP_083570.1| phosphoribosyl pyrophosphate synthetase 1-like ... 182 3e-46
>ref|NP_001157714.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform a
[Mus musculus].
Length = 369
Score = 501 bits (1291), Expect = e-142
Identities = 255/270 (94%), Positives = 260/270 (96%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQT+SKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTISKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS AAIHPS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPS 240
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
LEIPMLIP+EKPPITVV D G AIIVDD
Sbjct: 241 LEIPMLIPKEKPPITVVGDVGGRIAIIVDD 270
>ref|NP_659055.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform a
[Mus musculus].
Length = 369
Score = 501 bits (1291), Expect = e-142
Identities = 255/270 (94%), Positives = 260/270 (96%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCVAPPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVAPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQT+SKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTISKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS AAIHPS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPS 240
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
LEIPMLIP+EKPPITVV D G AIIVDD
Sbjct: 241 LEIPMLIPKEKPPITVVGDVGGRIAIIVDD 270
>ref|NP_080640.1| phosphoribosyl pyrophosphate synthase-associated protein 1 [Mus
musculus].
Length = 385
Score = 377 bits (969), Expect = e-105
Identities = 189/266 (71%), Positives = 223/266 (83%)
Frame = +3
Query: 231 APPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQ 410
A P MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+
Sbjct: 22 ARPAASPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIK 81
Query: 411 ESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGS 590
ESVRG+D+FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGS
Sbjct: 82 ESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGS 141
Query: 591 IVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAV 770
IV KLLASM+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAV
Sbjct: 142 IVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAV 201
Query: 771 IVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIP 950
IVAKSP +AKRAQS+AERLRLG+AVIHGEAQ E D DGRHSPPMV++ A +HP LE+P
Sbjct: 202 IVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKN-ATVHPGLELP 260
Query: 951 MLIPEEKPPITVVRDXGRXDAIIVDD 1028
+++ +EKPPITVV D G AIIVDD
Sbjct: 261 LMMAKEKPPITVVGDVGGRIAIIVDD 286
>ref|NP_001157716.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform b
[Mus musculus].
Length = 283
Score = 343 bits (879), Expect = 2e-94
Identities = 174/184 (94%), Positives = 176/184 (95%)
Frame = +3
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 656
MELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 657 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 836
LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 837 IAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIPMLIPEEKPPITVVRDXGRXDAI 1016
IAVIHGEAQDAESD VDGRHSPPMVRS AAIHPSLEIPMLIP+EKPPITVV D G AI
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAI 180
Query: 1017 IVDD 1028
IVDD
Sbjct: 181 IVDD 184
>ref|NP_001157715.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform b
[Mus musculus].
Length = 283
Score = 343 bits (879), Expect = 2e-94
Identities = 174/184 (94%), Positives = 176/184 (95%)
Frame = +3
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 656
MELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 657 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 836
LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 837 IAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIPMLIPEEKPPITVVRDXGRXDAI 1016
IAVIHGEAQDAESD VDGRHSPPMVRS AAIHPSLEIPMLIP+EKPPITVV D G AI
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAI 180
Query: 1017 IVDD 1028
IVDD
Sbjct: 181 IVDD 184
>ref|NP_080938.1| ribose-phosphate pyrophosphokinase 2 [Mus musculus].
Length = 318
Score = 187 bits (476), Expect = 9e-48
Identities = 99/199 (49%), Positives = 142/199 (71%), Gaps = 1/199 (0%)
Frame = +3
Query: 276 LVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVS 455
+VLFS +S+ +LS+++A+RLG+E+GKV + ++ET V+I ESVRG+DV+IIQ+
Sbjct: 4 IVLFSGSSHQ---DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGC 60
Query: 456 KDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAG 632
++N +MELLIM+ ACK + + VT VIP FPY++Q K K R I +KL+A+M+ AG
Sbjct: 61 GEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAG 120
Query: 633 LTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQS 812
H+ITMDLH +IQGFF+IPVDNL A P +LQ+I+E I ++RN +IV+ AKR S
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENITEWRNCIIVSPDAGGAKRVTS 180
Query: 813 FAERLRLGIAVIHGEAQDA 869
A+RL + A+IH E + A
Sbjct: 181 IADRLNVEFALIHKERKKA 199
>ref|NP_001032835.2| hypothetical protein LOC328099 [Mus musculus].
Length = 318
Score = 186 bits (471), Expect = 3e-47
Identities = 98/192 (51%), Positives = 136/192 (70%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KIA+RLG+E+GKV + ++ET V+I ESVRG+DV+I+Q+ ++N +
Sbjct: 8 SGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACK + A VT VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E I ++RN IV+ AKR S A+RL +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKERKKA 199
>ref|NP_067438.1| ribose-phosphate pyrophosphokinase 1 [Mus musculus].
Length = 318
Score = 186 bits (471), Expect = 3e-47
Identities = 98/192 (51%), Positives = 136/192 (70%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KIA+RLG+E+GKV + ++ET V+I ESVRG+DV+I+Q+ ++N +
Sbjct: 8 SGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACK + A VT VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E I ++RN IV+ AKR S A+RL +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKERKKA 199
>ref|NP_083570.1| phosphoribosyl pyrophosphate synthetase 1-like 1 [Mus musculus].
Length = 318
Score = 182 bits (463), Expect = 3e-46
Identities = 97/192 (50%), Positives = 134/192 (69%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KI ERLG+E+ KV + ++ET V+I ESVRG+DV+I+Q+ ++N ++
Sbjct: 8 SGSSHQDLSQKITERLGLELSKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDSL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACK + A VT VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSIAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E I D+RN IV+ AKR S A+ L +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPAVLKWIKENISDWRNCTIVSPDAGGAKRVTSIADHLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKERKKA 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,390,431
Number of extensions: 752731
Number of successful extensions: 2830
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2788
Number of HSP's successfully gapped: 9
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008022
(1057 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002758.1| phosphoribosyl pyrophosphate synthase-associate... 500 e-142
Alignment gi|NP_001230869.1| phosphoribosyl pyrophosphate synthase-associ... 496 e-140
Alignment gi|NP_001230865.1| phosphoribosyl pyrophosphate synthase-associ... 407 e-113
Alignment gi|NP_002757.2| phosphoribosyl pyrophosphate synthase-associate... 376 e-104
Alignment gi|NP_001230870.1| phosphoribosyl pyrophosphate synthase-associ... 343 2e-94
Alignment gi|NP_001230871.1| phosphoribosyl pyrophosphate synthase-associ... 343 2e-94
Alignment gi|NP_787082.1| ribose-phosphate pyrophosphokinase 3 [Homo sapi... 188 8e-48
Alignment gi|NP_002756.1| ribose-phosphate pyrophosphokinase 2 isoform 2 ... 186 2e-47
Alignment gi|NP_002755.1| ribose-phosphate pyrophosphokinase 1 isoform 1 ... 186 4e-47
Alignment gi|NP_001034180.1| ribose-phosphate pyrophosphokinase 2 isoform... 185 5e-47
>ref|NP_002758.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 1
[Homo sapiens].
Length = 369
Score = 500 bits (1288), Expect = e-142
Identities = 255/270 (94%), Positives = 259/270 (95%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCV PPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVTPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS AAIHPS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPS 240
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
LEIPMLIP+EKPPITVV D G AIIVDD
Sbjct: 241 LEIPMLIPKEKPPITVVGDVGGRIAIIVDD 270
>ref|NP_001230869.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 3
[Homo sapiens].
Length = 320
Score = 496 bits (1276), Expect = e-140
Identities = 253/268 (94%), Positives = 257/268 (95%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCV PPELE MN+TKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEP+RETR
Sbjct: 1 MFCVTPPELETKMNITKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPNRETR 60
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 61 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 120
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 121 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 180
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS AAIHPS
Sbjct: 181 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPS 240
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIV 1022
LEIPMLIP+EKPPITVV D G AIIV
Sbjct: 241 LEIPMLIPKEKPPITVVGDVGGRIAIIV 268
>ref|NP_001230865.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 2
[Homo sapiens].
Length = 329
Score = 407 bits (1045), Expect = e-113
Identities = 216/270 (80%), Positives = 219/270 (81%)
Frame = +3
Query: 219 MFCVAPPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETR 398
MFCV PPELE MN+TKGGLVLFSANSNSSCMELSKKIAE
Sbjct: 1 MFCVTPPELETKMNITKGGLVLFSANSNSSCMELSKKIAE-------------------- 40
Query: 399 VQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMR 578
DVNTTIMELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMR
Sbjct: 41 --------------------DVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMR 80
Query: 579 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 758
KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY
Sbjct: 81 KRGSIVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDY 140
Query: 759 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPS 938
RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESD VDGRHSPPMVRS AAIHPS
Sbjct: 141 RNAVIVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPS 200
Query: 939 LEIPMLIPEEKPPITVVRDXGRXDAIIVDD 1028
LEIPMLIP+EKPPITVV D G AIIVDD
Sbjct: 201 LEIPMLIPKEKPPITVVGDVGGRIAIIVDD 230
>ref|NP_002757.2| phosphoribosyl pyrophosphate synthase-associated protein 1 [Homo
sapiens].
Length = 385
Score = 376 bits (965), Expect = e-104
Identities = 189/266 (71%), Positives = 223/266 (83%)
Frame = +3
Query: 231 APPELEATMNVTKGGLVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQ 410
A P MN + G +FSANS ++C EL+K+I ERLG E+GK VYQE + ETRV+I+
Sbjct: 22 ARPVPPPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIK 81
Query: 411 ESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGS 590
ESVRG+D+FIIQT+ +DVNT +MELLIM YA KT+CA+++ GVIPYFPYSKQ KMRKRGS
Sbjct: 82 ESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGS 141
Query: 591 IVSKLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAV 770
IV KLLASM+ KAGLTH+ITMDLHQKEIQGFF+ PVDNLRASPFLLQYIQEEIP+YRNAV
Sbjct: 142 IVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAV 201
Query: 771 IVAKSPASAKRAQSFAERLRLGIAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIP 950
IVAKSP +AKRAQS+AERLRLG+AVIHGEAQ E D DGRHSPPMV++ A +HP LE+P
Sbjct: 202 IVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKN-ATVHPGLELP 260
Query: 951 MLIPEEKPPITVVRDXGRXDAIIVDD 1028
+++ +EKPPITVV D G AIIVDD
Sbjct: 261 LMMAKEKPPITVVGDVGGRIAIIVDD 286
>ref|NP_001230870.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 4
[Homo sapiens].
Length = 283
Score = 343 bits (879), Expect = 2e-94
Identities = 174/184 (94%), Positives = 176/184 (95%)
Frame = +3
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 656
MELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 657 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 836
LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 837 IAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIPMLIPEEKPPITVVRDXGRXDAI 1016
IAVIHGEAQDAESD VDGRHSPPMVRS AAIHPSLEIPMLIP+EKPPITVV D G AI
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAI 180
Query: 1017 IVDD 1028
IVDD
Sbjct: 181 IVDD 184
>ref|NP_001230871.1| phosphoribosyl pyrophosphate synthase-associated protein 2 isoform 5
[Homo sapiens].
Length = 283
Score = 343 bits (879), Expect = 2e-94
Identities = 174/184 (94%), Positives = 176/184 (95%)
Frame = +3
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 656
MELLIMVYACKTSCAKS+ GVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD
Sbjct: 1 MELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKAGLTHLITMD 60
Query: 657 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 836
LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG
Sbjct: 61 LHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRLG 120
Query: 837 IAVIHGEAQDAESDPVDGRHSPPMVRSAAAIHPSLEIPMLIPEEKPPITVVRDXGRXDAI 1016
IAVIHGEAQDAESD VDGRHSPPMVRS AAIHPSLEIPMLIP+EKPPITVV D G AI
Sbjct: 121 IAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAI 180
Query: 1017 IVDD 1028
IVDD
Sbjct: 181 IVDD 184
>ref|NP_787082.1| ribose-phosphate pyrophosphokinase 3 [Homo sapiens].
Length = 318
Score = 188 bits (477), Expect = 8e-48
Identities = 97/192 (50%), Positives = 139/192 (72%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KIA+RLG+E+GKV + ++ET V+I ESVRG+DV+I+Q+ ++N ++
Sbjct: 8 SGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIDESVRGEDVYIVQSGCGEINDSL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACK + A VT VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRSPISAKLVANMLSIAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E IP+++N +IV+ AKR S A++L +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPTVLKWIRENIPEWKNCIIVSPDAGGAKRVTSIADQLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKERKKA 199
>ref|NP_002756.1| ribose-phosphate pyrophosphokinase 2 isoform 2 [Homo sapiens].
Length = 318
Score = 186 bits (473), Expect = 2e-47
Identities = 98/199 (49%), Positives = 142/199 (71%), Gaps = 1/199 (0%)
Frame = +3
Query: 276 LVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVS 455
+VLFS +S+ +LS+++A+RLG+E+GKV + ++ET V+I ESVRG+DV+IIQ+
Sbjct: 4 IVLFSGSSHQ---DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGC 60
Query: 456 KDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAG 632
++N +MELLIM+ ACK + + VT VIP FPY++Q K K R I +KL+A+M+ AG
Sbjct: 61 GEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAG 120
Query: 633 LTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQS 812
H+ITMDLH +IQGFF+IPVDNL A P +LQ+I+E I +++N +IV+ AKR S
Sbjct: 121 ADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKRVTS 180
Query: 813 FAERLRLGIAVIHGEAQDA 869
A+RL + A+IH E + A
Sbjct: 181 IADRLNVEFALIHKERKKA 199
>ref|NP_002755.1| ribose-phosphate pyrophosphokinase 1 isoform 1 [Homo sapiens].
Length = 318
Score = 186 bits (471), Expect = 4e-47
Identities = 98/192 (51%), Positives = 136/192 (70%), Gaps = 1/192 (0%)
Frame = +3
Query: 297 SNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVSKDVNTTI 476
S SS +LS+KIA+RLG+E+GKV + ++ET V+I ESVRG+DV+I+Q+ ++N +
Sbjct: 8 SGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNL 67
Query: 477 MELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK-RGSIVSKLLASMMCKAGLTHLITM 653
MELLIM+ ACK + A VT VIP FPY++Q K K R I +KL+A+M+ AG H+ITM
Sbjct: 68 MELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITM 127
Query: 654 DLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKRAQSFAERLRL 833
DLH +IQGFF+IPVDNL A P +L++I+E I ++RN IV+ AKR S A+RL +
Sbjct: 128 DLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNV 187
Query: 834 GIAVIHGEAQDA 869
A+IH E + A
Sbjct: 188 DFALIHKERKKA 199
>ref|NP_001034180.1| ribose-phosphate pyrophosphokinase 2 isoform 1 [Homo sapiens].
Length = 321
Score = 185 bits (470), Expect = 5e-47
Identities = 98/202 (48%), Positives = 142/202 (70%), Gaps = 4/202 (1%)
Frame = +3
Query: 276 LVLFSANSNSSCMELSKKIAERLGVEMGKVQVYQEPDRETRVQIQESVRGKDVFIIQTVS 455
+VLFS +S+ +LS+++A+RLG+E+GKV + ++ET V+I ESVRG+DV+IIQ+
Sbjct: 4 IVLFSGSSHQ---DLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGC 60
Query: 456 KDVNTTIMELLIMVYACKTSCAKSVTGVIPYFPYSKQCKMRK----RGSIVSKLLASMMC 623
++N +MELLIM+ ACK + + VT VIP FPY++Q K K R I +KL+A+M+
Sbjct: 61 GEINDNLMELLIMINACKIASSSRVTAVIPCFPYARQDKKDKVGESRAPISAKLVANMLS 120
Query: 624 KAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPASAKR 803
AG H+ITMDLH +IQGFF+IPVDNL A P +LQ+I+E I +++N +IV+ AKR
Sbjct: 121 VAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLQWIRENIAEWKNCIIVSPDAGGAKR 180
Query: 804 AQSFAERLRLGIAVIHGEAQDA 869
S A+RL + A+IH E + A
Sbjct: 181 VTSIADRLNVEFALIHKERKKA 202
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,013,621
Number of extensions: 895449
Number of successful extensions: 3395
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3358
Number of HSP's successfully gapped: 12
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008022
(1057 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894474.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 347 8e-93
Sscrofa_Chr12 347 8e-93
>gb|GL894474.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3135
Length = 30778
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 458 ggacgtcaacaccaccatcatggagctgctgatcatggtgtacgcctgcaagacctcctg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 ggacgtcaacaccaccatcatggagctgctgatcatggtgtacgcctgcaagacctcctg 7169
Query: 518 cgccaagagcgtcaccggcgtgatcccctacttcccctacagcaagcagtgcaagatgcg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 cgccaagagcgtcaccggcgtgatcccctacttcccctacagcaagcagtgcaagatgcg 7109
Query: 578 caagcggggctccatcgtctccaagctgctggcctccatgatgtgcaaagccggt 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7108 caagcggggctccatcgtctccaagctgctggcctccatgatgtgcaaagccggt 7054
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 188 ggtctgagaattgggaaaccaagaaggtttgatgttttgtgtcgcgccgcctgaattaga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14469 ggtctgagaattgggaaaccaagaaggtttgatgttttgtgtcgcgccgcctgaattaga 14410
Query: 248 agccacaatgaacgtgaccaaaggaggtctggtgttgttttcagcaaattctaattcgtc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14409 agccacaatgaacgtgaccaaaggaggtctggtgttgttttcagcaaattctaattcgtc 14350
Query: 308 gtgtatggagctttccaagaaaattgccgag 338
|||||||||||||||||||||||||||||||
Sbjct: 14349 gtgtatggagctttccaagaaaattgccgag 14319
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 630 ggtctaactcatctcattactatggatttacaccaaaaggaaattcagggcttcttcaat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396 ggtctaactcatctcattactatggatttacaccaaaaggaaattcagggcttcttcaat 4337
Query: 690 attcctgttgataatttaagagcatctccgttcttgttacagtatattcaggaagag 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336 attcctgttgataatttaagagcatctccgttcttgttacagtatattcaggaagag 4280
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 94 aggaattttgttgtcagagactaaaaggaggttgtcgtaattgcccttgaacagcacaca 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14820 aggaattttgttgtcagagactaaaaggaggttgtcgtaattgcccttgaacagcacaca 14761
Query: 154 gtaaaacactgagctcttcagctccacctttcttg 188
|||||||||||||||||||||||||||||||||||
Sbjct: 14760 gtaaaacactgagctcttcagctccacctttcttg 14726
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 389 agaaacaagagtgcaaattcaagagtctgtgcgggggaaggatgttttcatcatccagac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11200 agaaacaagagtgcaaattcaagagtctgtgcgggggaaggatgttttcatcatccagac 11141
Query: 449 tgtttcaaag 458
||||||||||
Sbjct: 11140 tgtttcaaag 11131
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 342 ctgggggtggagatgggcaaggtgcaggtttaccaggagcccgacagag 390
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13233 ctgggggtggagatgggcaaggtgcaggtttaccaggagcccgacagag 13185
>Sscrofa_Chr12
|| Length = 63588571
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 458 ggacgtcaacaccaccatcatggagctgctgatcatggtgtacgcctgcaagacctcctg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62862828 ggacgtcaacaccaccatcatggagctgctgatcatggtgtacgcctgcaagacctcctg 62862887
Query: 518 cgccaagagcgtcaccggcgtgatcccctacttcccctacagcaagcagtgcaagatgcg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62862888 cgccaagagcgtcaccggcgtgatcccctacttcccctacagcaagcagtgcaagatgcg 62862947
Query: 578 caagcggggctccatcgtctccaagctgctggcctccatgatgtgcaaagccggt 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62862948 caagcggggctccatcgtctccaagctgctggcctccatgatgtgcaaagccggt 62863002
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 188 ggtctgagaattgggaaaccaagaaggtttgatgttttgtgtcgcgccgcctgaattaga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62856482 ggtctgagaattgggaaaccaagaaggtttgatgttttgtgtcgcgccgcctgaattaga 62856541
Query: 248 agccacaatgaacgtgaccaaaggaggtctggtgttgttttcagcaaattctaattcgtc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62856542 agccacaatgaacgtgaccaaaggaggtctggtgttgttttcagcaaattctaattcgtc 62856601
Query: 308 gtgtatggagctttccaagaaaattgccgag 338
|||||||||||||||||||||||||||||||
Sbjct: 62856602 gtgtatggagctttccaagaaaattgccgag 62856632
Score = 268 bits (135), Expect = 6e-69
Identities = 147/151 (97%)
Strand = Plus / Plus
Query: 801 agggcacagtccttcgccgagcggctgcggctgggcatcgcggtgattcacggagaagcg 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62913557 agggcacagtccttcgccgagcggctgcggctgggcatcgcggtgattcacggagaagcg 62913616
Query: 861 caagacgcggagtcggaccctgtggacggccggcactcgccgcccatggtcaggagcgcg 920
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 62913617 caggacgcggagtcggacctggtggacggccggcactcgccgcccatggtcaggagcgcg 62913676
Query: 921 gcggccatccaccccagcctggaaatcccca 951
||||||||||||||||||||||| |||||||
Sbjct: 62913677 gcggccatccaccccagcctggagatcccca 62913707
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 630 ggtctaactcatctcattactatggatttacaccaaaaggaaattcagggcttcttcaat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62866075 ggtctaactcatctcattactatggatttacaccaaaaggaaattcagggcttcttcaat 62866134
Query: 690 attcctgttgataatttaagagcatctccgttcttgttacagtatattcaggaagag 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62866135 attcctgttgataatttaagagcatctccgttcttgttacagtatattcaggaagag 62866191
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 94 aggaattttgttgtcagagactaaaaggaggttgtcgtaattgcccttgaacagcacaca 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62856131 aggaattttgttgtcagagactaaaaggaggttgtcgtaattgcccttgaacagcacaca 62856190
Query: 154 gtaaaacactgagctcttcagctccacctttcttg 188
|||||||||||||||||||||||||||||||||||
Sbjct: 62856191 gtaaaacactgagctcttcagctccacctttcttg 62856225
Score = 147 bits (74), Expect = 1e-32
Identities = 127/142 (89%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 477 atggagctgctgatcatggtgtacgc-ctgcaagacctcctgcgccaagagcgtcaccgg 535
||||||||||||||||||| ||||| ||| ||||| |||| |||| || | ||| |||
Sbjct: 5063528 atggagctgctgatcatggcctacgcgctg-aagacggcctgtgccaggaacatcatcgg 5063586
Query: 536 cgtgatcccctacttcccctacagcaagcagtgcaagatgcgcaagcggggctccatcgt 595
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5063587 cgtcatcccctacttcccctacagcaagcagagcaagatgcgcaagcggggctccatcgt 5063646
Query: 596 ctccaagctgctggcctccatg 617
| |||||||||||||||||||
Sbjct: 5063647 gtgcaagctgctggcctccatg 5063668
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 389 agaaacaagagtgcaaattcaagagtctgtgcgggggaaggatgttttcatcatccagac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62859648 agaaacaagagtgcaaattcaagagtctgtgcgggggaaggatgttttcatcatccagac 62859707
Query: 449 tgtttcaaag 458
||||||||||
Sbjct: 62859708 tgtttcaaag 62859717
Score = 101 bits (51), Expect = 8e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 1 attttgctcctggagacgccgcttggggaccggcgcttgcttcctccggca 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62850855 attttgctcctggagacgccgcttggggaccggcgcttgcttcctccggca 62850905
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 342 ctgggggtggagatgggcaaggtgcaggtttaccaggagcccgacagag 390
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62857677 ctgggggtggagatgggcaaggtgcaggtttaccaggagcccgacagag 62857725
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 952 tgctgatcccngaagagaagcctcccatcacggttgtccgcgacntgggaagaaangatg 1011
|||||||||| | |||||||||||||||||||||||| ||||| ||||| ||| ||
Sbjct: 62917535 tgctgatcccgaaggagaagcctcccatcacggttgtcggcgacgtgggaggaaggattg 62917594
Query: 1012 ccatcatcgtgg 1023
||||||||||||
Sbjct: 62917595 ccatcatcgtgg 62917606
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,365,749
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 16
Length of query: 1057
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1036
Effective length of database: 2,808,413,156
Effective search space: 2909516029616
Effective search space used: 2909516029616
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)