Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008030
(1208 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033224.1| receptor expression-enhancing protein 6 [Bos... 338 4e-93
Alignment gi|NP_001040070.1| receptor expression-enhancing protein 5 [Bos... 231 7e-61
Alignment gi|NP_001029705.1| receptor expression-enhancing protein 4 [Bos... 88 2e-17
Alignment gi|NP_001075930.1| receptor expression-enhancing protein 1 [Bos... 81 2e-15
Alignment gi|NP_001039790.1| receptor expression-enhancing protein 2 [Bos... 77 4e-14
Alignment gi|NP_001095431.1| receptor expression-enhancing protein 3 [Bos... 71 2e-12
>ref|NP_001033224.1| receptor expression-enhancing protein 6 [Bos taurus].
Length = 185
Score = 338 bits (868), Expect = 4e-93
Identities = 165/185 (89%), Positives = 174/185 (94%), Gaps = 1/185 (0%)
Frame = +1
Query: 259 MDGLRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNL 438
MDGLRQRFERFLEQRNLATEALGALEAKTGVDKRYLA GAATLLSLYLLFG+GA LLC+L
Sbjct: 1 MDGLRQRFERFLEQRNLATEALGALEAKTGVDKRYLATGAATLLSLYLLFGYGAPLLCSL 60
Query: 439 IGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFL 618
IGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLL WFPFYYAGKCAFL
Sbjct: 61 IGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLSWFPFYYAGKCAFL 120
Query: 619 LFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRD-DKASMTH 795
LFCM PGPWNGAHMLYHR IRPLFLKHHEAVDSI++D+SGRALDVAAG+T+D K S+
Sbjct: 121 LFCMAPGPWNGAHMLYHRIIRPLFLKHHEAVDSIVSDISGRALDVAAGMTKDAGKVSVNQ 180
Query: 796 LKKGK 810
L+K K
Sbjct: 181 LQKAK 185
>ref|NP_001040070.1| receptor expression-enhancing protein 5 [Bos taurus].
Length = 189
Score = 231 bits (590), Expect = 7e-61
Identities = 107/177 (60%), Positives = 134/177 (75%)
Frame = +1
Query: 268 LRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNLIGF 447
+RQRF++FL Q+N T+ L EAKTGV++ ++A G LL+LYL+FG+GASLLCNLIGF
Sbjct: 5 MRQRFDQFLHQKNCMTDLLAKTEAKTGVNRSFIALGVIGLLALYLVFGYGASLLCNLIGF 64
Query: 448 AYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFLLFC 627
YPAY SIKAIESP+KEDDT WLTYWVVYG+F + EFFSDL L WFPFYY KC FLL+C
Sbjct: 65 GYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIVEFFSDLFLSWFPFYYMLKCGFLLWC 124
Query: 628 MIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDKASMTHL 798
M P P NGA +LY R IRP FLKH VD+++NDL +A + A I+++ + + L
Sbjct: 125 MAPSPANGADLLYKRIIRPFFLKHESQVDNVVNDLKDKAKETADTISKEARKAAVSL 181
>ref|NP_001029705.1| receptor expression-enhancing protein 4 [Bos taurus].
Length = 257
Score = 87.8 bits (216), Expect = 2e-17
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Frame = +1
Query: 424 LLCNLI----GFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPF 591
++C L+ G YPAYAS KA+++ + + W+ YW+V+ LF E F+D+ + WFPF
Sbjct: 5 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFISWFPF 64
Query: 592 YYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVA----- 756
YY K AF+L+ + P GA MLY + + P +H + +D+ + R+ +
Sbjct: 65 YYEIKMAFVLWLLSPYT-RGASMLYRKFVHPSLSRHEKEIDTYIVQAKERSYETVLSFGK 123
Query: 757 AGITRDDKASMTHLKKGK*SPWPAPA*MSRLVSWRTCHT---------PSPLWIPQLTPQ 909
G+ A++ K + A A R S + T PL++ P
Sbjct: 124 RGLNIAASAAVQAATKSQ----GALAGKLRSFSMQDLRTIPDGPAPTYQDPLYLEDQVPH 179
Query: 910 QSPPAALHPQPSQPSGAP-PTWASPSISPWPLALP 1011
+ PP + S W+ + P P A P
Sbjct: 180 RRPPIGYRAGGLRDSDTDNECWSDTEVVPQPPARP 214
>ref|NP_001075930.1| receptor expression-enhancing protein 1 [Bos taurus].
Length = 201
Score = 80.9 bits (198), Expect = 2e-15
Identities = 37/109 (33%), Positives = 60/109 (55%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY S KA++S ++ W+ YW+++ LF AE F+D+ L WFPFYY
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
K AF+ + + P G+ +LY + + P + +D + R+ D
Sbjct: 69 KIAFVAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYD 116
>ref|NP_001039790.1| receptor expression-enhancing protein 2 [Bos taurus].
Length = 254
Score = 76.6 bits (187), Expect = 4e-14
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY+S KA+++ + ++ W+ YW+V+ F AE +D++L WFPFY+
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDV-----AAGIT 768
K AF+++ + P G+ +LY + + P + +D + ++ + G+
Sbjct: 69 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 769 RDDKASMTHLKKGK 810
A++T KG+
Sbjct: 128 LAANAAVTAAAKGQ 141
>ref|NP_001095431.1| receptor expression-enhancing protein 3 [Bos taurus].
Length = 255
Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/112 (28%), Positives = 57/112 (50%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA+++ + ++ W+ YW+V+ L+ + E +D + WFP YY K AF
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAF 72
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITR 771
+++ + P GA ++Y + + PL +D + R + R
Sbjct: 73 VIWLLSPYT-RGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNFGR 123
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,948,819
Number of extensions: 1512567
Number of successful extensions: 11139
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10450
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008030
(1208 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855124.1| PREDICTED: similar to polyposis locus protein 1... 328 6e-90
Alignment gi|XP_536283.2| PREDICTED: similar to Polyposis locus protein 1... 235 6e-62
Alignment gi|XP_543255.2| PREDICTED: similar to receptor expression enhan... 86 7e-17
Alignment gi|XP_854822.1| PREDICTED: similar to receptor expression enhan... 80 3e-15
Alignment gi|XP_531921.2| PREDICTED: similar to jumonji domain containing... 77 3e-14
Alignment gi|XP_536364.1| PREDICTED: similar to receptor expression enhan... 72 1e-12
>ref|XP_855124.1| PREDICTED: similar to polyposis locus protein 1-like 1 [Canis
familiaris].
Length = 414
Score = 328 bits (841), Expect = 6e-90
Identities = 190/320 (59%), Positives = 206/320 (64%), Gaps = 9/320 (2%)
Frame = +1
Query: 274 QRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNLIGFAY 453
+RFE LEQRNL TEALGALEAKTGVDKRYLAAGAATLLSLYLLFG GASLLCN+IGF Y
Sbjct: 2 RRFEHLLEQRNLVTEALGALEAKTGVDKRYLAAGAATLLSLYLLFGFGASLLCNVIGFVY 61
Query: 454 PAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFLLFCMI 633
PAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLL WFPFYYAGKCAFLLFCMI
Sbjct: 62 PAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLSWFPFYYAGKCAFLLFCMI 121
Query: 634 PGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDKASMTHLKKGK* 813
PGPWNGAHMLYHRAIRPLFLKHHEAVDS++ D SGRALDVAAGITRD S +
Sbjct: 122 PGPWNGAHMLYHRAIRPLFLKHHEAVDSVVRDFSGRALDVAAGITRDGVCSRGAGVSPQS 181
Query: 814 SPWPAPA*MSRLVSWRTCH-TPSPLWIPQLT-----PQQSP---PAALHPQPSQPSGAPP 966
AP ++ + + H P P P T P SP PA PS PS P
Sbjct: 182 KCGSAPE--GQVKASPSLHKEPPPAGEPGGTSRPKSPLDSPTDSPAETSTSPSSPSKPVP 239
Query: 967 TWASPSISPWPLALPTAPSCPASSGVGFSLGPTXXXXXXXXXXXXXXXXXXXXXXXXXWG 1146
+ +IS P P A + S L P G
Sbjct: 240 ASSWQTISAQPQVRPPAGTSRVPSKSRVQLRPRAASRQSSETA----------------G 283
Query: 1147 QQHAGPFYSSSGPSQTARQS 1206
QQ P ++SG Q A++S
Sbjct: 284 QQRPQPSATASGQPQPAQES 303
>ref|XP_536283.2| PREDICTED: similar to Polyposis locus protein 1 (TB2 protein)
[Canis familiaris].
Length = 514
Score = 235 bits (600), Expect = 6e-62
Identities = 112/192 (58%), Positives = 141/192 (73%), Gaps = 8/192 (4%)
Frame = +1
Query: 247 PGGAM--------DGLRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYL 402
PGGA +RQRF+RFL+++N T+ L LEA++GV++RY+A GA LL+LYL
Sbjct: 315 PGGAQVLASLAMSAAVRQRFDRFLQEKNCMTDLLAILEARSGVNRRYIALGAVGLLALYL 374
Query: 403 LFGHGASLLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFW 582
+FG+GASLLCNLIGF YPAY SIKAIESP+KEDDT WLTYWVVYG+F +AEFFSDL L W
Sbjct: 375 VFGYGASLLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSW 434
Query: 583 FPFYYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAG 762
PFYY KC FLL+CM P P NGA +LY R I+P+FLKH VD+++ND +A +
Sbjct: 435 VPFYYMLKCGFLLWCMAPSPSNGAELLYRRVIQPVFLKHESQVDTMVNDFKDKAKETVDT 494
Query: 763 ITRDDKASMTHL 798
IT++ K + L
Sbjct: 495 ITKEAKKAAVTL 506
>ref|XP_543255.2| PREDICTED: similar to receptor expression enhancing protein 4
[Canis familiaris].
Length = 413
Score = 85.9 bits (211), Expect = 7e-17
Identities = 39/113 (34%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Frame = +1
Query: 424 LLCNLI----GFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPF 591
++C L+ G YPAYAS KA+++ + + W+ YW+V+ LF E F+D+ + WFPF
Sbjct: 161 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFISWFPF 220
Query: 592 YYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
YY K AF+L+ + P GA +LY + + P +H + +D+ + R+ +
Sbjct: 221 YYEIKMAFVLWLLSPYT-KGASLLYRKFVHPSLSRHEKEIDTCIVQAKERSYE 272
>ref|XP_854822.1| PREDICTED: similar to receptor expression enhancing protein 1
[Canis familiaris].
Length = 301
Score = 80.5 bits (197), Expect = 3e-15
Identities = 36/105 (34%), Positives = 58/105 (55%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA++S ++ W+ YW+++ LF AE F+D+ L WFPFYY K AF
Sbjct: 113 IFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAF 172
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
+ + + P G+ +LY + + P + +D + R+ D
Sbjct: 173 VAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYD 216
>ref|XP_531921.2| PREDICTED: similar to jumonji domain containing 1B [Canis
familiaris].
Length = 2038
Score = 77.0 bits (188), Expect = 3e-14
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 5/179 (2%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY+S KA+++ + ++ W+ YW+V+ F AE +D++L WFPFY+
Sbjct: 1793 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 1852
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDV-----AAGIT 768
K AF+++ + P G+ +LY + + P + +D + ++ + G+
Sbjct: 1853 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 1911
Query: 769 RDDKASMTHLKKGK*SPWPAPA*MSRLVSWRTCHTPSPLWIPQLTPQQSPPAALHPQPS 945
A++T KG+ +S + + + + P Q P + L P PS
Sbjct: 1912 LAANAAVTAAAKGQ-------GVLSEKLRSFSMQDLTLIRDEDALPLQGPDSRLRPHPS 1963
>ref|XP_536364.1| PREDICTED: similar to receptor expression enhancing protein 3
[Canis familiaris].
Length = 274
Score = 71.6 bits (174), Expect = 1e-12
Identities = 33/116 (28%), Positives = 58/116 (50%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA+++ + ++ W+ YW+V+ L+ + E +D + WFP YY K AF
Sbjct: 32 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETITDQTVAWFPLYYELKIAF 91
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDKA 783
+++ + P GA ++Y + + PL +D + R + R A
Sbjct: 92 VVWLLSPYT-KGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETVVNFGRQGLA 146
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,528,096
Number of extensions: 1482863
Number of successful extensions: 11504
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10931
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008030
(1208 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354033.1| PREDICTED: receptor expression-enhancing pro... 285 4e-77
Alignment gi|XP_003354288.1| PREDICTED: receptor expression-enhancing pro... 92 8e-19
Alignment gi|XP_003354290.1| PREDICTED: hypothetical protein LOC100620332... 88 1e-17
Alignment gi|XP_001927652.1| PREDICTED: receptor expression-enhancing pro... 87 2e-17
Alignment gi|XP_001927661.2| PREDICTED: receptor expression-enhancing pro... 87 2e-17
Alignment gi|XP_003125012.2| PREDICTED: receptor expression-enhancing pro... 81 1e-15
Alignment gi|XP_003124004.1| PREDICTED: receptor expression-enhancing pro... 77 3e-14
Alignment gi|XP_003124020.2| PREDICTED: receptor expression-enhancing pro... 76 3e-14
Alignment gi|XP_001925694.2| PREDICTED: receptor expression-enhancing pro... 70 2e-12
Alignment gi|XP_003123881.2| PREDICTED: receptor expression-enhancing pro... 58 1e-08
>ref|XP_003354033.1| PREDICTED: receptor expression-enhancing protein 6-like [Sus
scrofa].
Length = 193
Score = 285 bits (729), Expect = 4e-77
Identities = 135/137 (98%), Positives = 136/137 (99%)
Frame = +1
Query: 364 LAAGAATLLSLYLLFGHGASLLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLF 543
L+ GAATLLSLYLLFGHGASLLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLF
Sbjct: 23 LSTGAATLLSLYLLFGHGASLLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLF 82
Query: 544 GLAEFFSDLLLFWFPFYYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIM 723
GLAEFFSDLLLFWFPFYYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIM
Sbjct: 83 GLAEFFSDLLLFWFPFYYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIM 142
Query: 724 NDLSGRALDVAAGITRD 774
NDLSGRALDVAAGITRD
Sbjct: 143 NDLSGRALDVAAGITRD 159
>ref|XP_003354288.1| PREDICTED: receptor expression-enhancing protein 5-like [Sus
scrofa].
Length = 71
Score = 91.7 bits (226), Expect = 8e-19
Identities = 41/67 (61%), Positives = 54/67 (80%)
Frame = +1
Query: 268 LRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNLIGF 447
+RQRF++FL Q+N T+ L +EAKTGV++ Y+A G L++LYL+FG+GASLLCNLIGF
Sbjct: 5 MRQRFDQFLHQKNYLTDILAKIEAKTGVNRSYIALGVIGLVALYLVFGYGASLLCNLIGF 64
Query: 448 AYPAYAS 468
YPAY S
Sbjct: 65 GYPAYVS 71
>ref|XP_003354290.1| PREDICTED: hypothetical protein LOC100620332 [Sus scrofa].
Length = 429
Score = 87.8 bits (216), Expect = 1e-17
Identities = 44/71 (61%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Frame = +1
Query: 460 YASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFLLFCMIPG 639
+ IKAIESP+KEDDT WLTYWVVYG+F +AEFFSDL L WFPFYY K F L PG
Sbjct: 59 FPRIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKLLFWL----PG 114
Query: 640 -------PWNG 651
WNG
Sbjct: 115 VPSCSLRHWNG 125
>ref|XP_001927652.1| PREDICTED: receptor expression-enhancing protein 4 isoform 1 [Sus
scrofa].
Length = 257
Score = 87.0 bits (214), Expect = 2e-17
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 19/215 (8%)
Frame = +1
Query: 424 LLCNLI----GFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPF 591
++C L+ G YPAYAS KA+++ + + W+ YW+V+ LF E F+D+ + WFPF
Sbjct: 5 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFVSWFPF 64
Query: 592 YYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDS-----------IMNDLSG 738
YY K AF+L+ + P GA +LY + + P +H + +D+ +
Sbjct: 65 YYEIKMAFVLWLLSPYT-KGASLLYRKFVHPSLSRHEKEIDTYIVQAKERSYETVLSFGK 123
Query: 739 RALDVAAGITRDDKASMTHLKKGK*SPWPAPA*MSRLVSWRTCHTP---SPLWIPQLTPQ 909
R L++AA G+ + M L S TP PL++ P+
Sbjct: 124 RGLNIAASAAVQAATKSQGALAGRLRSFS----MQDLRSIPDDSTPVYQDPLYLEDQVPR 179
Query: 910 QSPPAALHPQPSQPSGA-PPTWASPSISPWPLALP 1011
+ PP Q S W+ P P A P
Sbjct: 180 RRPPIGYRAGGLQDSDTEEECWSDTEAVPQPPARP 214
>ref|XP_001927661.2| PREDICTED: receptor expression-enhancing protein 4 isoform 2 [Sus
scrofa].
Length = 257
Score = 87.0 bits (214), Expect = 2e-17
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 19/215 (8%)
Frame = +1
Query: 424 LLCNLI----GFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPF 591
++C L+ G YPAYAS KA+++ + + W+ YW+V+ LF E F+D+ + WFPF
Sbjct: 5 MICRLVVLVFGMLYPAYASYKAVKTKNIREYVRWMMYWIVFALFMAVETFTDIFVSWFPF 64
Query: 592 YYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDS-----------IMNDLSG 738
YY K AF+L+ + P GA +LY + + P +H + +D+ +
Sbjct: 65 YYEIKMAFVLWLLSPYT-KGASLLYRKFVHPSLSRHEKEIDTYIVQAKERSYETVLSFGK 123
Query: 739 RALDVAAGITRDDKASMTHLKKGK*SPWPAPA*MSRLVSWRTCHTP---SPLWIPQLTPQ 909
R L++AA G+ + M L S TP PL++ P+
Sbjct: 124 RGLNIAASAAVQAATKSQGALAGRLRSFS----MQDLRSIPDDSTPVYQDPLYLEDQVPR 179
Query: 910 QSPPAALHPQPSQPSGA-PPTWASPSISPWPLALP 1011
+ PP Q S W+ P P A P
Sbjct: 180 RRPPIGYRAGGLQDSDTEEECWSDTEAVPQPPARP 214
>ref|XP_003125012.2| PREDICTED: receptor expression-enhancing protein 1-like [Sus
scrofa].
Length = 202
Score = 81.3 bits (199), Expect = 1e-15
Identities = 38/110 (34%), Positives = 60/110 (54%)
Frame = +1
Query: 421 SLLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYA 600
S L + G YPAY S KA++S ++ W+ YW+++ LF AE F+D+ L WFPFYY
Sbjct: 9 SRLVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYE 68
Query: 601 GKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
K AF+ + + P G+ +LY + + P + +D + R+ D
Sbjct: 69 LKIAFVAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYD 117
>ref|XP_003124004.1| PREDICTED: receptor expression-enhancing protein 2-like [Sus
scrofa].
Length = 254
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY+S KA+++ + ++ W+ YW+V+ F AE +D++L WFPFY+
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDV-----AAGIT 768
K AF+++ + P G+ +LY + + P + +D + ++ + G+
Sbjct: 69 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 769 RDDKASMTHLKKGK 810
A++T KG+
Sbjct: 128 LAANAAVTAAAKGQ 141
>ref|XP_003124020.2| PREDICTED: receptor expression-enhancing protein 2-like [Sus
scrofa].
Length = 245
Score = 76.3 bits (186), Expect = 3e-14
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY+S KA+++ + ++ W+ YW+V+ F AE +D++L WFPFY+
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDV-----AAGIT 768
K AF+++ + P G+ +LY + + P + +D + ++ + G+
Sbjct: 69 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 769 RDDKASMTHLKKG 807
A++T KG
Sbjct: 128 LAANAAVTAAAKG 140
>ref|XP_001925694.2| PREDICTED: receptor expression-enhancing protein 3-like [Sus
scrofa].
Length = 255
Score = 70.5 bits (171), Expect = 2e-12
Identities = 32/112 (28%), Positives = 57/112 (50%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA+++ + ++ W+ YW+V+ L+ + E +D + WFP YY K AF
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAF 72
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITR 771
+++ + P GA ++Y + + PL +D + R + R
Sbjct: 73 VIWLLSPYT-KGASLIYRKFLHPLLSAKEREIDDYIVQAKERGYETMVNFGR 123
>ref|XP_003123881.2| PREDICTED: receptor expression-enhancing protein 5-like isoform 1
[Sus scrofa].
Length = 65
Score = 57.8 bits (138), Expect = 1e-08
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = +1
Query: 628 MIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDKASMTHL 798
M P P NGA +LY R IRP FLKH VD++++DL +A + A IT++ K + +L
Sbjct: 1 MAPSPANGADLLYQRIIRPFFLKHESQVDNVVSDLKDKAKETADAITKEAKKAAVNL 57
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,601,714
Number of extensions: 1069264
Number of successful extensions: 7390
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6892
Number of HSP's successfully gapped: 10
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008030
(1208 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191860.1| receptor expression-enhancing protein 6 isof... 314 8e-86
Alignment gi|NP_647453.1| receptor expression-enhancing protein 6 isoform... 313 2e-85
Alignment gi|NP_031900.3| receptor expression-enhancing protein 5 [Mus mu... 233 2e-61
Alignment gi|NP_850919.1| receptor expression-enhancing protein 4 [Mus mu... 93 4e-19
Alignment gi|NP_848723.1| receptor expression-enhancing protein 1 [Mus mu... 81 2e-15
Alignment gi|NP_659114.2| receptor expression-enhancing protein 2 isoform... 77 3e-14
Alignment gi|NP_001191843.1| receptor expression-enhancing protein 2 isof... 77 4e-14
Alignment gi|NP_001191844.1| receptor expression-enhancing protein 3 isof... 72 9e-13
Alignment gi|NP_848721.1| receptor expression-enhancing protein 3 isoform... 72 9e-13
>ref|NP_001191860.1| receptor expression-enhancing protein 6 isoform 2 [Mus musculus].
Length = 174
Score = 314 bits (805), Expect = 8e-86
Identities = 149/174 (85%), Positives = 160/174 (91%)
Frame = +1
Query: 259 MDGLRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNL 438
MDGLRQRFERFLEQ+N+ATEALGALEA+TGV+KRYLAAGA LL LYLLFG+GASLLCN+
Sbjct: 1 MDGLRQRFERFLEQKNVATEALGALEARTGVEKRYLAAGALALLGLYLLFGYGASLLCNV 60
Query: 439 IGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFL 618
IGF YPAYAS+KAIESPSKEDDTVWLTYWVVY LFGL EFFSDLLLFWFPFYYAGKCAFL
Sbjct: 61 IGFVYPAYASVKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFPFYYAGKCAFL 120
Query: 619 LFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDK 780
LFCM PGPWNGA +LYHR IRPLFLKHH A+DS + LSGRALD+AAGITRD K
Sbjct: 121 LFCMTPGPWNGALLLYHRVIRPLFLKHHMALDSAASQLSGRALDLAAGITRDAK 174
>ref|NP_647453.1| receptor expression-enhancing protein 6 isoform 1 [Mus musculus].
Length = 201
Score = 313 bits (802), Expect = 2e-85
Identities = 148/172 (86%), Positives = 159/172 (92%)
Frame = +1
Query: 259 MDGLRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNL 438
MDGLRQRFERFLEQ+N+ATEALGALEA+TGV+KRYLAAGA LL LYLLFG+GASLLCN+
Sbjct: 1 MDGLRQRFERFLEQKNVATEALGALEARTGVEKRYLAAGALALLGLYLLFGYGASLLCNV 60
Query: 439 IGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFL 618
IGF YPAYAS+KAIESPSKEDDTVWLTYWVVY LFGL EFFSDLLLFWFPFYYAGKCAFL
Sbjct: 61 IGFVYPAYASVKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFPFYYAGKCAFL 120
Query: 619 LFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRD 774
LFCM PGPWNGA +LYHR IRPLFLKHH A+DS + LSGRALD+AAGITRD
Sbjct: 121 LFCMTPGPWNGALLLYHRVIRPLFLKHHMALDSAASQLSGRALDLAAGITRD 172
>ref|NP_031900.3| receptor expression-enhancing protein 5 [Mus musculus].
Length = 189
Score = 233 bits (594), Expect = 2e-61
Identities = 106/177 (59%), Positives = 137/177 (77%)
Frame = +1
Query: 268 LRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNLIGF 447
+R+RF+RFL ++N T+ L LEAKTGV++ ++A G L++LYL+FG+GASLLCNLIGF
Sbjct: 5 MRERFDRFLHEKNCMTDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCNLIGF 64
Query: 448 AYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFLLFC 627
YPAY S+KAIESP+K+DDT WLTYWVVYG+F +AEFFSDL L WFPFYY KC FLL+C
Sbjct: 65 GYPAYISMKAIESPNKDDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWC 124
Query: 628 MIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDKASMTHL 798
M P P NGA MLY R IRP+FLKH VDS++ D+ +A + A I+++ K + +L
Sbjct: 125 MAPSPANGAEMLYRRIIRPIFLKHESQVDSVVKDVKDKAKETADAISKEVKKATVNL 181
>ref|NP_850919.1| receptor expression-enhancing protein 4 [Mus musculus].
Length = 257
Score = 93.2 bits (230), Expect = 4e-19
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 19/215 (8%)
Frame = +1
Query: 424 LLCNLI----GFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPF 591
++C L+ G YPAYAS KA++S + + W+ YW+V+ +F AE F+D+ + WFPF
Sbjct: 5 MICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPF 64
Query: 592 YYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDS-----------IMNDLSG 738
YY K AF+L+ + P GA +LY + + P +H + +D+ M
Sbjct: 65 YYEFKMAFVLWLLSPYT-KGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGK 123
Query: 739 RALDVAAGITRDDKASMTHLKKGK*SPWPAPA*MSRLVSWRTCHTPS---PLWIPQLTPQ 909
R+L++AA G+ + M L S P+ PL++ P+
Sbjct: 124 RSLNIAASAAVQAATKSQGALAGRLRSFS----MQDLRSIPDTPVPTYQDPLYLEDQVPR 179
Query: 910 QSPPAALHPQPSQPSGA-PPTWASPSISPWPLALP 1011
+ PP P Q S W+ I P P P
Sbjct: 180 RRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRP 214
>ref|NP_848723.1| receptor expression-enhancing protein 1 [Mus musculus].
Length = 201
Score = 80.9 bits (198), Expect = 2e-15
Identities = 37/109 (33%), Positives = 60/109 (55%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY S KA++S ++ W+ YW+++ LF AE F+D+ L WFPFYY
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
K AF+ + + P G+ +LY + + P + +D + R+ D
Sbjct: 69 KIAFVAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYD 116
>ref|NP_659114.2| receptor expression-enhancing protein 2 isoform 1 [Mus musculus].
Length = 254
Score = 77.0 bits (188), Expect = 3e-14
Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY+S KA+++ + ++ W+ YW+V+ F AE +D++L WFPFY+
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIILSWFPFYFEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDV-----AAGIT 768
K AF+++ + P G+ +LY + + P + +D + ++ + G+
Sbjct: 69 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 769 RDDKASMTHLKKGK 810
A++T KG+
Sbjct: 128 LAANAAVTAAAKGQ 141
>ref|NP_001191843.1| receptor expression-enhancing protein 2 isoform 2 [Mus musculus].
Length = 252
Score = 76.6 bits (187), Expect = 4e-14
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY+S KA+++ + ++ W+ YW+V+ F AE +D++L WFPFY+
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIILSWFPFYFEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDV-----AAGIT 768
K AF+++ + P G+ +LY + + P + +D + ++ + G+
Sbjct: 69 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 769 RDDKASMTHLKKG 807
A++T KG
Sbjct: 128 LAANAAVTAAAKG 140
>ref|NP_001191844.1| receptor expression-enhancing protein 3 isoform 1 [Mus musculus].
Length = 267
Score = 72.0 bits (175), Expect = 9e-13
Identities = 33/112 (29%), Positives = 57/112 (50%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA+++ + ++ W+ YW+V+ L+ + E +D L WFP YY K AF
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPLYYELKIAF 72
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITR 771
+++ + P GA ++Y + + PL +D + R + R
Sbjct: 73 VIWLLSPYT-RGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNFGR 123
>ref|NP_848721.1| receptor expression-enhancing protein 3 isoform 2 [Mus musculus].
Length = 254
Score = 72.0 bits (175), Expect = 9e-13
Identities = 33/112 (29%), Positives = 57/112 (50%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA+++ + ++ W+ YW+V+ L+ + E +D L WFP YY K AF
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTLAWFPLYYELKIAF 72
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITR 771
+++ + P GA ++Y + + PL +D + R + R
Sbjct: 73 VIWLLSPYT-RGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNFGR 123
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,536,487
Number of extensions: 1187979
Number of successful extensions: 8728
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8110
Number of HSP's successfully gapped: 9
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008030
(1208 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612402.1| receptor expression-enhancing protein 6 [Homo s... 314 9e-86
Alignment gi|NP_005660.4| receptor expression-enhancing protein 5 [Homo s... 234 1e-61
Alignment gi|NP_079508.2| receptor expression-enhancing protein 4 [Homo s... 82 1e-15
Alignment gi|NP_075063.1| receptor expression-enhancing protein 1 isoform... 81 2e-15
Alignment gi|NP_001158202.1| receptor expression-enhancing protein 1 isof... 80 3e-15
Alignment gi|NP_057690.2| receptor expression-enhancing protein 2 [Homo s... 76 5e-14
Alignment gi|NP_001001330.1| receptor expression-enhancing protein 3 [Hom... 71 2e-12
Alignment gi|NP_001158203.1| receptor expression-enhancing protein 1 isof... 64 2e-10
Alignment gi|NP_001158204.1| receptor expression-enhancing protein 1 isof... 54 4e-07
>ref|NP_612402.1| receptor expression-enhancing protein 6 [Homo sapiens].
Length = 184
Score = 314 bits (805), Expect = 9e-86
Identities = 154/184 (83%), Positives = 160/184 (86%)
Frame = +1
Query: 259 MDGLRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNL 438
MDGLRQR E FLEQRNL TE LGALEAKTGV+KRYLAAGA TLLSLYLLFG+GASLLCNL
Sbjct: 1 MDGLRQRVEHFLEQRNLVTEVLGALEAKTGVEKRYLAAGAVTLLSLYLLFGYGASLLCNL 60
Query: 439 IGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFL 618
IGF YPAYASIKAIESPSK+DDTVWLTYWVVY LFGLAEFFSDLLL WFPFYY GKCAFL
Sbjct: 61 IGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVGKCAFL 120
Query: 619 LFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDKASMTHL 798
LFCM P PWNGA MLY R +RPLFL+HH AVD IMNDLSGRALD AAGITR+ K S T
Sbjct: 121 LFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDAAAGITRNVKPSQTPQ 180
Query: 799 KKGK 810
K K
Sbjct: 181 PKDK 184
>ref|NP_005660.4| receptor expression-enhancing protein 5 [Homo sapiens].
Length = 189
Score = 234 bits (597), Expect = 1e-61
Identities = 107/177 (60%), Positives = 136/177 (76%)
Frame = +1
Query: 268 LRQRFERFLEQRNLATEALGALEAKTGVDKRYLAAGAATLLSLYLLFGHGASLLCNLIGF 447
+R+RF+RFL ++N T+ L LEAKTGV++ ++A G L++LYL+FG+GASLLCNLIGF
Sbjct: 5 MRERFDRFLHEKNCMTDLLAKLEAKTGVNRSFIALGVIGLVALYLVFGYGASLLCNLIGF 64
Query: 448 AYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFLLFC 627
YPAY SIKAIESP+KEDDT WLTYWVVYG+F +AEFFSD+ L WFPFYY KC FLL+C
Sbjct: 65 GYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYMLKCGFLLWC 124
Query: 628 MIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITRDDKASMTHL 798
M P P NGA +LY R IRP FLKH +DS++ DL +A + A IT++ K + +L
Sbjct: 125 MAPSPSNGAELLYKRIIRPFFLKHESQMDSVVKDLKDKAKETADAITKEAKKATVNL 181
>ref|NP_079508.2| receptor expression-enhancing protein 4 [Homo sapiens].
Length = 257
Score = 82.0 bits (201), Expect = 1e-15
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Frame = +1
Query: 424 LLCNLI----GFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPF 591
++C L+ G PAYAS KA+++ + + W+ YW+V+ LF AE +D+ + WFPF
Sbjct: 5 MICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPF 64
Query: 592 YYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
YY K AF+L+ + P GA +LY + + P +H + +D+ + R+ +
Sbjct: 65 YYEIKMAFVLWLLSPYT-KGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYE 116
>ref|NP_075063.1| receptor expression-enhancing protein 1 isoform 2 [Homo sapiens].
Length = 201
Score = 80.9 bits (198), Expect = 2e-15
Identities = 37/109 (33%), Positives = 60/109 (55%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY S KA++S ++ W+ YW+++ LF AE F+D+ L WFPFYY
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
K AF+ + + P G+ +LY + + P + +D + R+ D
Sbjct: 69 KIAFVAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYD 116
>ref|NP_001158202.1| receptor expression-enhancing protein 1 isoform 1 [Homo sapiens].
Length = 208
Score = 80.5 bits (197), Expect = 3e-15
Identities = 36/105 (34%), Positives = 58/105 (55%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA++S ++ W+ YW+++ LF AE F+D+ L WFPFYY K AF
Sbjct: 20 IFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAF 79
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALD 750
+ + + P G+ +LY + + P + +D + R+ D
Sbjct: 80 VAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYD 123
>ref|NP_057690.2| receptor expression-enhancing protein 2 [Homo sapiens].
Length = 252
Score = 76.3 bits (186), Expect = 5e-14
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY+S KA+++ + ++ W+ YW+V+ F AE +D++L WFPFY+
Sbjct: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
Query: 604 KCAFLLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDV-----AAGIT 768
K AF+++ + P G+ +LY + + P + +D + ++ + G+
Sbjct: 69 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
Query: 769 RDDKASMTHLKKG 807
A++T KG
Sbjct: 128 LAANAAVTAAAKG 140
>ref|NP_001001330.1| receptor expression-enhancing protein 3 [Homo sapiens].
Length = 255
Score = 70.9 bits (172), Expect = 2e-12
Identities = 32/112 (28%), Positives = 57/112 (50%)
Frame = +1
Query: 436 LIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAF 615
+ G YPAY S KA+++ + ++ W+ YW+V+ L+ + E +D + WFP YY K AF
Sbjct: 13 VFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVAWFPLYYELKIAF 72
Query: 616 LLFCMIPGPWNGAHMLYHRAIRPLFLKHHEAVDSIMNDLSGRALDVAAGITR 771
+++ + P GA ++Y + + PL +D + R + R
Sbjct: 73 VIWLLSPYT-KGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVNFGR 123
>ref|NP_001158203.1| receptor expression-enhancing protein 1 isoform 3 [Homo sapiens].
Length = 174
Score = 64.3 bits (155), Expect = 2e-10
Identities = 27/80 (33%), Positives = 44/80 (55%)
Frame = +1
Query: 511 WLTYWVVYGLFGLAEFFSDLLLFWFPFYYAGKCAFLLFCMIPGPWNGAHMLYHRAIRPLF 690
W+ YW+++ LF AE F+D+ L WFPFYY K AF+ + + P G+ +LY + + P
Sbjct: 11 WMMYWIIFALFTTAETFTDIFLCWFPFYYELKIAFVAWLLSPYT-KGSSLLYRKFVHPTL 69
Query: 691 LKHHEAVDSIMNDLSGRALD 750
+ +D + R+ D
Sbjct: 70 SSKEKEIDDCLVQAKDRSYD 89
>ref|NP_001158204.1| receptor expression-enhancing protein 1 isoform 4 [Homo sapiens].
Length = 143
Score = 53.5 bits (127), Expect = 4e-07
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +1
Query: 424 LLCNLIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYGLFGLAEFFSDLLLFWFPFYYAG 603
L+ + G YPAY S KA++S ++ W+ YW+++ LF AE F+D+ L W Y
Sbjct: 9 LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWDRVPYRR 68
Query: 604 KC 609
C
Sbjct: 69 DC 70
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,327,598
Number of extensions: 1437078
Number of successful extensions: 10903
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 10262
Number of HSP's successfully gapped: 9
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008030
(1208 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 561 e-157
>Sscrofa_Chr02
|| Length = 162569375
Score = 561 bits (283), Expect = e-157
Identities = 283/283 (100%)
Strand = Plus / Minus
Query: 775 gacaaagcaagcatgactcacctcaagaagggcaagtgaagcccctggccagcccctgca 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77877123 gacaaagcaagcatgactcacctcaagaagggcaagtgaagcccctggccagcccctgca 77877064
Query: 835 tgaatgagccggctggtgagctggaggacctgtcacaccccaagtcctctgtggattcct 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77877063 tgaatgagccggctggtgagctggaggacctgtcacaccccaagtcctctgtggattcct 77877004
Query: 895 caactgactccccagcagagcccaccagcagcccttcatccccagccaagccagccctca 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77877003 caactgactccccagcagagcccaccagcagcccttcatccccagccaagccagccctca 77876944
Query: 955 ggagctccaccaacctgggccagtcccagcatcagtccctggccactggctctgccaaca 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77876943 ggagctccaccaacctgggccagtcccagcatcagtccctggccactggctctgccaaca 77876884
Query: 1015 gctcccagctgcccggcaagctccggggtgggcttcagtctcg 1057
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77876883 gctcccagctgcccggcaagctccggggtgggcttcagtctcg 77876841
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 605 agtgcgccttcctgttgttctgcatgattcccggcccctggaacggggctcacatgctgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77877771 agtgcgccttcctgttgttctgcatgattcccggcccctggaacggggctcacatgctgt 77877712
Query: 665 atcatcgcgccatccgtccactgtttctaaagcatcacgaggccgtggacagcatcatga 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77877711 atcatcgcgccatccgtccactgtttctaaagcatcacgaggccgtggacagcatcatga 77877652
Query: 725 acgacctcagcggacgggccctggatgtggcagccggaataactcgggacg 775
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77877651 acgacctcagcggacgggccctggatgtggcagccggaataactcgggacg 77877601
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 468 aatcaaagctatcgagagcccaagcaaagaggacgacactgtgtggctcacctactgggt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77878204 aatcaaagctatcgagagcccaagcaaagaggacgacactgtgtggctcacctactgggt 77878145
Query: 528 ggtgtacggcctgttcgggctggccgagttcttcagcgatctactcctgttctggttccc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77878144 ggtgtacggcctgttcgggctggccgagttcttcagcgatctactcctgttctggttccc 77878085
Query: 588 tttctactacgcgggcaag 606
|||||||||||||||||||
Sbjct: 77878084 tttctactacgcgggcaag 77878066
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 373 ggagccgccactctactaagcctgtatcttctgttcggccacggggcgtctctgctgtgc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77878382 ggagccgccactctactaagcctgtatcttctgttcggccacggggcgtctctgctgtgc 77878323
Query: 433 aacctcatcggctttgcatacccagcatatgcttc 467
|||||||||||||||||||||||||||||||||||
Sbjct: 77878322 aacctcatcggctttgcatacccagcatatgcttc 77878288
Score = 71.9 bits (36), Expect = 8e-10
Identities = 56/60 (93%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 1150 caacatgccgggcccttctac-tcttcctcagggccttcacagacagcccgccagtcctc 1208
||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 77876749 caacatgcccggccct-ctacctcttcctcaggcccttcacagacagcccgccagtcctc 77876691
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,842,854
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 5
Length of query: 1208
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1187
Effective length of database: 2,808,413,156
Effective search space: 3333586416172
Effective search space used: 3333586416172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)