Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008032
(1308 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069936.1| protein BAT4 [Bos taurus]. 474 e-133
>ref|NP_001069936.1| protein BAT4 [Bos taurus].
Length = 351
Score = 474 bits (1219), Expect = e-133
Identities = 237/274 (86%), Positives = 245/274 (89%), Gaps = 2/274 (0%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MSGSSLINFTPATDPSDLWKDGQLQS PEELEPTLDGAAARAFYEALI DE STPE QR+
Sbjct: 1 MSGSSLINFTPATDPSDLWKDGQLQSQPEELEPTLDGAAARAFYEALIEDESSTPETQRA 60
Query: 670 QPEPAXXXXXXXXXXXXX--AGASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLD 843
QP PA AGASG GQRRSLEA+DKMTQQILRAAQEGDLAKLK+LLD
Sbjct: 61 QPGPASKRKRKKRRTMRETAAGASGGHGQRRSLEAKDKMTQQILRAAQEGDLAKLKRLLD 120
Query: 844 PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAE 1023
PHEAGGAGGNINARDAFWWTPLMCAARAGQ AAVRYLLGRGAAWVGVCELGGRDAAQLAE
Sbjct: 121 PHEAGGAGGNINARDAFWWTPLMCAARAGQRAAVRYLLGRGAAWVGVCELGGRDAAQLAE 180
Query: 1024 EAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQ 1203
EAGFPEVARMVRESPGETR+PENR RS SP+YCETCD HFQDSNH TSTAHLLSLSRDL+
Sbjct: 181 EAGFPEVARMVRESPGETRNPENRSRSPSPKYCETCDGHFQDSNHCTSTAHLLSLSRDLR 240
Query: 1204 PPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
PP LPLGVPTSSPGFKLLLRGGWEPG GLGP+G+
Sbjct: 241 PPILPLGVPTSSPGFKLLLRGGWEPGMGLGPRGE 274
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,247,104
Number of extensions: 1735991
Number of successful extensions: 9360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9250
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 331
Effective length of database: 14,207,134
Effective search space: 4702561354
Effective search space used: 4702561354
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008032
(1308 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538835.1| PREDICTED: similar to HLA-B associated transcri... 439 e-123
>ref|XP_538835.1| PREDICTED: similar to HLA-B associated transcript 4 [Canis
familiaris].
Length = 351
Score = 439 bits (1128), Expect = e-123
Identities = 221/274 (80%), Positives = 234/274 (85%), Gaps = 2/274 (0%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MS SLI FTPAT+PSDLWKDGQ QS PEELEPTL+GAAARAFYEALI +E S P QRS
Sbjct: 1 MSRPSLITFTPATNPSDLWKDGQQQSQPEELEPTLNGAAARAFYEALIAEESSIPASQRS 60
Query: 670 QPEPAXXXXXXXXXXXXXA--GASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLD 843
QPEP A GAS GQRRSLEAEDKMT ILRAAQEGDLA+L++LLD
Sbjct: 61 QPEPDRKRKRKKRRMMGEAAVGASAGHGQRRSLEAEDKMTHWILRAAQEGDLAELRRLLD 120
Query: 844 PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAE 1023
PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGG+DAAQLAE
Sbjct: 121 PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGKDAAQLAE 180
Query: 1024 EAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQ 1203
EAGFPEVARMVRES GETR+PENR +S S QYCETC+AHFQDSNH TSTAHLLSL RDL+
Sbjct: 181 EAGFPEVARMVRESHGETRNPENRSQSPSFQYCETCNAHFQDSNHWTSTAHLLSLPRDLR 240
Query: 1204 PPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
PNLPLGVP SSPGFKLLLRGGWEPG GLGP+G+
Sbjct: 241 SPNLPLGVPASSPGFKLLLRGGWEPGMGLGPRGE 274
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,843,120
Number of extensions: 1808213
Number of successful extensions: 10156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10075
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 330
Effective length of database: 15,340,888
Effective search space: 5062493040
Effective search space used: 5062493040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008032
(1308 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138855.1| protein BAT4 [Sus scrofa]. 528 e-150
>ref|NP_001138855.1| protein BAT4 [Sus scrofa].
Length = 349
Score = 528 bits (1361), Expect = e-150
Identities = 259/272 (95%), Positives = 259/272 (95%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS
Sbjct: 1 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 60
Query: 670 QPEPAXXXXXXXXXXXXXAGASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLDPH 849
QPEPA AGASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLDPH
Sbjct: 61 QPEPARKRKKRRTMRETTAGASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLDPH 120
Query: 850 EAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAEEA 1029
EAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAEEA
Sbjct: 121 EAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAEEA 180
Query: 1030 GFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQPP 1209
GFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQPP
Sbjct: 181 GFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQPP 240
Query: 1210 NLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
NLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ
Sbjct: 241 NLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 272
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,787,656
Number of extensions: 1130755
Number of successful extensions: 6491
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6396
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 334
Effective length of database: 8,804,438
Effective search space: 2940682292
Effective search space used: 2940682292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008032
(1308 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115849.2| G patch domain and ankyrin repeats-containing p... 393 e-109
Alignment gi|NP_001122069.1| G patch domain and ankyrin repeats-containin... 389 e-108
>ref|NP_115849.2| G patch domain and ankyrin repeats-containing protein 1 isoform 1
[Mus musculus].
Length = 372
Score = 393 bits (1010), Expect = e-109
Identities = 202/286 (70%), Positives = 222/286 (77%), Gaps = 2/286 (0%)
Frame = +1
Query: 454 LPNLIFPTLPKAMSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALI 633
LP+L F MS S I FTPA D SDLWKDGQ Q E+ EP LDGAAARAFYEALI
Sbjct: 12 LPSLHFLVSLTGMSRPSFIEFTPAADSSDLWKDGQQQPQQEKAEPVLDGAAARAFYEALI 71
Query: 634 GDEDSTPEPQRSQPEPAXXXXXXXXXXXXXAGASGEDGQRRSLEAEDKMTQQILRAAQEG 813
D+ S+ +PQR+ EP A+G Q R+LE ED+M Q IL AAQ G
Sbjct: 72 ADDSSSSKPQRA--EPMRERKKKRRRVTREPAAAGVPRQGRALEDEDRMAQWILLAAQNG 129
Query: 814 DLAKLKKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCEL 993
DL +L++LL+P EAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVC+L
Sbjct: 130 DLTELRRLLEPQEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCDL 189
Query: 994 GGRDAAQLAEEAGFPEVARMVRESPGETRSPENRPRSL--SPQYCETCDAHFQDSNHRTS 1167
GGRDAAQLAEEAGFPEVARMVRES GETRSPEN+ RS S Q+CE C AHF+DSNH TS
Sbjct: 190 GGRDAAQLAEEAGFPEVARMVRESHGETRSPENQNRSTPSSSQFCEDCGAHFEDSNHHTS 249
Query: 1168 TAHLLSLSRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
TAHLLSLSR QP NLPLGVPTSSPGF+LLLRGGWEPG GLGP+G+
Sbjct: 250 TAHLLSLSRRPQPSNLPLGVPTSSPGFRLLLRGGWEPGMGLGPRGE 295
>ref|NP_001122069.1| G patch domain and ankyrin repeats-containing protein 1 isoform 2
[Mus musculus].
Length = 349
Score = 389 bits (1000), Expect = e-108
Identities = 198/274 (72%), Positives = 217/274 (79%), Gaps = 2/274 (0%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MS S I FTPA D SDLWKDGQ Q E+ EP LDGAAARAFYEALI D+ S+ +PQR+
Sbjct: 1 MSRPSFIEFTPAADSSDLWKDGQQQPQQEKAEPVLDGAAARAFYEALIADDSSSSKPQRA 60
Query: 670 QPEPAXXXXXXXXXXXXXAGASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLDPH 849
EP A+G Q R+LE ED+M Q IL AAQ GDL +L++LL+P
Sbjct: 61 --EPMRERKKKRRRVTREPAAAGVPRQGRALEDEDRMAQWILLAAQNGDLTELRRLLEPQ 118
Query: 850 EAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAEEA 1029
EAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVC+LGGRDAAQLAEEA
Sbjct: 119 EAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCDLGGRDAAQLAEEA 178
Query: 1030 GFPEVARMVRESPGETRSPENRPRSL--SPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQ 1203
GFPEVARMVRES GETRSPEN+ RS S Q+CE C AHF+DSNH TSTAHLLSLSR Q
Sbjct: 179 GFPEVARMVRESHGETRSPENQNRSTPSSSQFCEDCGAHFEDSNHHTSTAHLLSLSRRPQ 238
Query: 1204 PPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
P NLPLGVPTSSPGF+LLLRGGWEPG GLGP+G+
Sbjct: 239 PSNLPLGVPTSSPGFRLLLRGGWEPGMGLGPRGE 272
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,240,940
Number of extensions: 1431165
Number of successful extensions: 7195
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7052
Number of HSP's successfully gapped: 2
Length of query: 436
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 332
Effective length of database: 12,493,815
Effective search space: 4147946580
Effective search space used: 4147946580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008032
(1308 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149417.1| G patch domain and ankyrin repeats-containing p... 426 e-119
Alignment gi|NP_001186166.1| G patch domain and ankyrin repeats-containin... 426 e-119
Alignment gi|NP_001186169.1| G patch domain and ankyrin repeats-containin... 426 e-119
Alignment gi|NP_001186168.1| G patch domain and ankyrin repeats-containin... 426 e-119
Alignment gi|NP_001186167.1| G patch domain and ankyrin repeats-containin... 426 e-119
>ref|NP_149417.1| G patch domain and ankyrin repeats-containing protein 1 [Homo
sapiens].
Length = 356
Score = 426 bits (1096), Expect = e-119
Identities = 216/279 (77%), Positives = 227/279 (81%), Gaps = 7/279 (2%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MS LI FTPATDPSDLWKDGQ Q PE+ E TLDGAAARAFYEALIGDE S P+ QRS
Sbjct: 1 MSRPLLITFTPATDPSDLWKDGQQQPQPEKPESTLDGAAARAFYEALIGDESSAPDSQRS 60
Query: 670 QPEPAXXXXXXXXXXXXXA-------GASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKL 828
Q EPA GASG GQ RSLEAEDKMT +ILRAAQEGDL +L
Sbjct: 61 QTEPARERKRKKRRIMKAPAAEAVAEGASGRHGQGRSLEAEDKMTHRILRAAQEGDLPEL 120
Query: 829 KKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDA 1008
++LL+PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAV YLLGRGAAWVGVCEL GRDA
Sbjct: 121 RRLLEPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVSYLLGRGAAWVGVCELSGRDA 180
Query: 1009 AQLAEEAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSL 1188
AQLAEEAGFPEVARMVRES GETRSPENR + S QYCE CD HFQDSNHRTSTAHLLSL
Sbjct: 181 AQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTHFQDSNHRTSTAHLLSL 240
Query: 1189 SRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
S+ QPPNLPLGVP SSPGFKLLLRGGWEPG GLGP+G+
Sbjct: 241 SQGPQPPNLPLGVPISSPGFKLLLRGGWEPGMGLGPRGE 279
>ref|NP_001186166.1| G patch domain and ankyrin repeats-containing protein 1 [Homo
sapiens].
Length = 356
Score = 426 bits (1096), Expect = e-119
Identities = 216/279 (77%), Positives = 227/279 (81%), Gaps = 7/279 (2%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MS LI FTPATDPSDLWKDGQ Q PE+ E TLDGAAARAFYEALIGDE S P+ QRS
Sbjct: 1 MSRPLLITFTPATDPSDLWKDGQQQPQPEKPESTLDGAAARAFYEALIGDESSAPDSQRS 60
Query: 670 QPEPAXXXXXXXXXXXXXA-------GASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKL 828
Q EPA GASG GQ RSLEAEDKMT +ILRAAQEGDL +L
Sbjct: 61 QTEPARERKRKKRRIMKAPAAEAVAEGASGRHGQGRSLEAEDKMTHRILRAAQEGDLPEL 120
Query: 829 KKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDA 1008
++LL+PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAV YLLGRGAAWVGVCEL GRDA
Sbjct: 121 RRLLEPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVSYLLGRGAAWVGVCELSGRDA 180
Query: 1009 AQLAEEAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSL 1188
AQLAEEAGFPEVARMVRES GETRSPENR + S QYCE CD HFQDSNHRTSTAHLLSL
Sbjct: 181 AQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTHFQDSNHRTSTAHLLSL 240
Query: 1189 SRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
S+ QPPNLPLGVP SSPGFKLLLRGGWEPG GLGP+G+
Sbjct: 241 SQGPQPPNLPLGVPISSPGFKLLLRGGWEPGMGLGPRGE 279
>ref|NP_001186169.1| G patch domain and ankyrin repeats-containing protein 1 [Homo
sapiens].
Length = 356
Score = 426 bits (1096), Expect = e-119
Identities = 216/279 (77%), Positives = 227/279 (81%), Gaps = 7/279 (2%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MS LI FTPATDPSDLWKDGQ Q PE+ E TLDGAAARAFYEALIGDE S P+ QRS
Sbjct: 1 MSRPLLITFTPATDPSDLWKDGQQQPQPEKPESTLDGAAARAFYEALIGDESSAPDSQRS 60
Query: 670 QPEPAXXXXXXXXXXXXXA-------GASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKL 828
Q EPA GASG GQ RSLEAEDKMT +ILRAAQEGDL +L
Sbjct: 61 QTEPARERKRKKRRIMKAPAAEAVAEGASGRHGQGRSLEAEDKMTHRILRAAQEGDLPEL 120
Query: 829 KKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDA 1008
++LL+PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAV YLLGRGAAWVGVCEL GRDA
Sbjct: 121 RRLLEPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVSYLLGRGAAWVGVCELSGRDA 180
Query: 1009 AQLAEEAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSL 1188
AQLAEEAGFPEVARMVRES GETRSPENR + S QYCE CD HFQDSNHRTSTAHLLSL
Sbjct: 181 AQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTHFQDSNHRTSTAHLLSL 240
Query: 1189 SRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
S+ QPPNLPLGVP SSPGFKLLLRGGWEPG GLGP+G+
Sbjct: 241 SQGPQPPNLPLGVPISSPGFKLLLRGGWEPGMGLGPRGE 279
>ref|NP_001186168.1| G patch domain and ankyrin repeats-containing protein 1 [Homo
sapiens].
Length = 356
Score = 426 bits (1096), Expect = e-119
Identities = 216/279 (77%), Positives = 227/279 (81%), Gaps = 7/279 (2%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MS LI FTPATDPSDLWKDGQ Q PE+ E TLDGAAARAFYEALIGDE S P+ QRS
Sbjct: 1 MSRPLLITFTPATDPSDLWKDGQQQPQPEKPESTLDGAAARAFYEALIGDESSAPDSQRS 60
Query: 670 QPEPAXXXXXXXXXXXXXA-------GASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKL 828
Q EPA GASG GQ RSLEAEDKMT +ILRAAQEGDL +L
Sbjct: 61 QTEPARERKRKKRRIMKAPAAEAVAEGASGRHGQGRSLEAEDKMTHRILRAAQEGDLPEL 120
Query: 829 KKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDA 1008
++LL+PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAV YLLGRGAAWVGVCEL GRDA
Sbjct: 121 RRLLEPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVSYLLGRGAAWVGVCELSGRDA 180
Query: 1009 AQLAEEAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSL 1188
AQLAEEAGFPEVARMVRES GETRSPENR + S QYCE CD HFQDSNHRTSTAHLLSL
Sbjct: 181 AQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTHFQDSNHRTSTAHLLSL 240
Query: 1189 SRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
S+ QPPNLPLGVP SSPGFKLLLRGGWEPG GLGP+G+
Sbjct: 241 SQGPQPPNLPLGVPISSPGFKLLLRGGWEPGMGLGPRGE 279
>ref|NP_001186167.1| G patch domain and ankyrin repeats-containing protein 1 [Homo
sapiens].
Length = 356
Score = 426 bits (1096), Expect = e-119
Identities = 216/279 (77%), Positives = 227/279 (81%), Gaps = 7/279 (2%)
Frame = +1
Query: 490 MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRS 669
MS LI FTPATDPSDLWKDGQ Q PE+ E TLDGAAARAFYEALIGDE S P+ QRS
Sbjct: 1 MSRPLLITFTPATDPSDLWKDGQQQPQPEKPESTLDGAAARAFYEALIGDESSAPDSQRS 60
Query: 670 QPEPAXXXXXXXXXXXXXA-------GASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKL 828
Q EPA GASG GQ RSLEAEDKMT +ILRAAQEGDL +L
Sbjct: 61 QTEPARERKRKKRRIMKAPAAEAVAEGASGRHGQGRSLEAEDKMTHRILRAAQEGDLPEL 120
Query: 829 KKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDA 1008
++LL+PHEAGGAGGNINARDAFWWTPLMCAARAGQGAAV YLLGRGAAWVGVCEL GRDA
Sbjct: 121 RRLLEPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVSYLLGRGAAWVGVCELSGRDA 180
Query: 1009 AQLAEEAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSL 1188
AQLAEEAGFPEVARMVRES GETRSPENR + S QYCE CD HFQDSNHRTSTAHLLSL
Sbjct: 181 AQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTHFQDSNHRTSTAHLLSL 240
Query: 1189 SRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQ 1305
S+ QPPNLPLGVP SSPGFKLLLRGGWEPG GLGP+G+
Sbjct: 241 SQGPQPPNLPLGVPISSPGFKLLLRGGWEPGMGLGPRGE 279
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,367,166
Number of extensions: 1748919
Number of successful extensions: 9620
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 9494
Number of HSP's successfully gapped: 5
Length of query: 436
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 330
Effective length of database: 14,802,980
Effective search space: 4884983400
Effective search space used: 4884983400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008032
(1308 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1380 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1380 bits (696), Expect = 0.0
Identities = 696/696 (100%)
Strand = Plus / Plus
Query: 400 ggtgtctgtaggtgattctggtcattgcaggaccatctgggacttggcttccccctgcct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472632 ggtgtctgtaggtgattctggtcattgcaggaccatctgggacttggcttccccctgcct 27472691
Query: 460 aatctcattttcccaactctccccaaagccatgtccgggtcctccctcattaactttacc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472692 aatctcattttcccaactctccccaaagccatgtccgggtcctccctcattaactttacc 27472751
Query: 520 ccagccactgaccccagtgatctctggaaagatgggcaactgcagtcacaccctgaagag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472752 ccagccactgaccccagtgatctctggaaagatgggcaactgcagtcacaccctgaagag 27472811
Query: 580 ctggagcccaccctggatggggctgcagcccgggctttctatgaagctttgattggggac 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472812 ctggagcccaccctggatggggctgcagcccgggctttctatgaagctttgattggggac 27472871
Query: 640 gaggacagcacccctgagccccagagatctcagcctgagcctgctagaaagaggaagaaa 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472872 gaggacagcacccctgagccccagagatctcagcctgagcctgctagaaagaggaagaaa 27472931
Query: 700 agacgaacgatgagggagactacagcaggagcatcaggagaagatggacaaaggagatcc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472932 agacgaacgatgagggagactacagcaggagcatcaggagaagatggacaaaggagatcc 27472991
Query: 760 cttgaggcagaggacaagatgacccagcagatactgagggcagcccaggagggggacctg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472992 cttgaggcagaggacaagatgacccagcagatactgagggcagcccaggagggggacctg 27473051
Query: 820 gcaaaactgaaaaagctgttggatccccatgaggcagggggagctggagggaatatcaac 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27473052 gcaaaactgaaaaagctgttggatccccatgaggcagggggagctggagggaatatcaac 27473111
Query: 880 gctcgagatgctttctggtggaccccactgatgtgtgctgcccgagcaggccagggggca 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27473112 gctcgagatgctttctggtggaccccactgatgtgtgctgcccgagcaggccagggggca 27473171
Query: 940 gctgtgcgctatctcctgggccgtggggcggcctgggtgggggtctgcgagctgggtggc 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27473172 gctgtgcgctatctcctgggccgtggggcggcctgggtgggggtctgcgagctgggtggc 27473231
Query: 1000 agggatgctgctcagctggcggaagaagcaggcttccctgaagtggcccgcatggtcaga 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27473232 agggatgctgctcagctggcggaagaagcaggcttccctgaagtggcccgcatggtcaga 27473291
Query: 1060 gagagccccggagagacaaggagtccagagaaccgg 1095
||||||||||||||||||||||||||||||||||||
Sbjct: 27473292 gagagccccggagagacaaggagtccagagaaccgg 27473327
Score = 406 bits (205), Expect = e-110
Identities = 208/209 (99%)
Strand = Plus / Plus
Query: 194 agctgcgcatgcggctttgactgtggacgcctttgcttagagtagcgccattttgcagta 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27471933 agctgcgcatgcggctttgactgtggacgcctttgcttagagtagcgccattttgctgta 27471992
Query: 254 cggaagctgcaaagcaacgagtggaacctccccgcgaatcggcttcctgcttccggacaa 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27471993 cggaagctgcaaagcaacgagtggaacctccccgcgaatcggcttcctgcttccggacaa 27472052
Query: 314 atgtcaagtctgtttttgtttgagaagaataccccgaaataggatccaggaagatttaaa 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27472053 atgtcaagtctgtttttgtttgagaagaataccccgaaataggatccaggaagatttaaa 27472112
Query: 374 gagccaggctgattgttttccttaatggt 402
|||||||||||||||||||||||||||||
Sbjct: 27472113 gagccaggctgattgttttccttaatggt 27472141
Score = 369 bits (186), Expect = 3e-99
Identities = 203/211 (96%)
Strand = Plus / Plus
Query: 1094 ggccccgatccctctccccccagtactgtgagacctgtgatgcccacttccaagactcta 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27474220 ggccccgatccctctccccccagtactgtgagacctgtgatgcccacttccaagactcta 27474279
Query: 1154 accaccgtacatccaccgctcacctgctctcactgtcccgggatctccagccccccaacc 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27474280 accaccgtacatccaccgctcacctgctctcactgtcccgggatctccagccccccaacc 27474339
Query: 1214 tgccccttggggtgcctacctccagcccaggctttaagcttctcctaannnnnnnttggg 1273
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 27474340 tgccccttggggtgcctacctccagcccaggctttaagcttctcctaagggggggttggg 27474399
Query: 1274 agcctggaaaaggactgggaccccaaggtca 1304
|||||||||| ||||||||||||||||||||
Sbjct: 27474400 agcctggaaagggactgggaccccaaggtca 27474430
Score = 355 bits (179), Expect = 4e-95
Identities = 189/191 (98%), Gaps = 1/191 (0%)
Strand = Plus / Plus
Query: 5 atttactgccgctccctctcacacaacgagcctcaggcgtgcggccctgctacccagacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27471209 atttactgccgctccctctcacacaacgagcctcaggcgtgcggccctgctacccagacc 27471268
Query: 65 attgacctcatcaccgaccagctagcctggcccttatcgcttgtggagcccccctgtccg 124
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 27471269 attgacctcatcaccgaccagctc-cctggcccttatcgcttgtggagcccccctgtccg 27471327
Query: 125 agtcagcctgccaaggagaccctcaacggggcccatatttcactcaagggtttgatctcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27471328 agtcagcctgccaaggagaccctcaacggggcccatatttcactcaagggtttgatctcc 27471387
Query: 185 tgaggtgggag 195
|||||||||||
Sbjct: 27471388 tgaggtgggag 27471398
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,154,839
Number of extensions: 266
Number of successful extensions: 266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 4
Length of query: 1308
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1287
Effective length of database: 2,808,413,156
Effective search space: 3614427731772
Effective search space used: 3614427731772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)