Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008039
(1159 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015585.1| mRNA export factor [Bos taurus]. 626 e-179
Alignment gi|NP_001069645.1| mitotic checkpoint protein BUB3 [Bos taurus]. 175 8e-44
Alignment gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru... 63 4e-10
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 62 1e-09
Alignment gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li... 59 1e-08
Alignment gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part... 59 1e-08
Alignment gi|NP_001178318.1| autophagy-related protein 16-1 [Bos taurus]. 58 1e-08
Alignment gi|XP_002686606.1| PREDICTED: ATG16 autophagy related 16-like 1... 58 1e-08
Alignment gi|XP_002686605.1| PREDICTED: ATG16 autophagy related 16-like 1... 58 1e-08
Alignment gi|XP_877095.3| PREDICTED: ATG16 autophagy related 16-like 1 (S... 58 1e-08
>ref|NP_001015585.1| mRNA export factor [Bos taurus].
Length = 368
Score = 626 bits (1614), Expect = e-179
Identities = 293/300 (97%), Positives = 295/300 (98%)
Frame = +2
Query: 260 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 440 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKT+HWIKAPNYSC
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSC 143
Query: 620 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 800 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 980 GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GTNTSAPQDIYAVNGIAFHPVHGT TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
>ref|NP_001069645.1| mitotic checkpoint protein BUB3 [Bos taurus].
Length = 326
Score = 175 bits (443), Expect = 8e-44
Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
Frame = +2
Query: 281 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 6 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60
Query: 461 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 61 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117
Query: 641 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 118 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177
Query: 821 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 178 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231
Query: 998 PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
+ IY VN I+FH +H T T GSDG + W + +L + I+ F
Sbjct: 232 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284
>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
Length = 407
Score = 63.2 bits (152), Expect = 4e-10
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 62 DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
TAS DKT K+W + + + ++QH I+W++ +S +++ S DKT+K
Sbjct: 117 SFVTASDDKTVKVWSTHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170
Query: 653 FWDTRS 670
WD S
Sbjct: 171 LWDKTS 176
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 61.6 bits (148), Expect = 1e-09
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
K ++ + + C +F+P + N +++GS+ VR W+V+ +G+ + K H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174
Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
V ++ DGS + ++S D ++WD S Q ++ I + PV + + +PN ++
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232
Query: 632 SWDKTLKFWD 661
+ D TLK WD
Sbjct: 233 TLDNTLKLWD 242
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = +2
Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
++ + FSP G +L + S ++ W D K H + DV WS D +
Sbjct: 47 AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101
Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
+ +AS DKT K+WD++S + ++ + H V ++ P + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159
Query: 668 SSNPMMVL 691
+ + L
Sbjct: 160 TGKCLKTL 167
>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
Length = 589
Score = 58.5 bits (140), Expect = 1e-08
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +2
Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
+ C+ F P + N+L GS VR W Q + H GPVL + +S +G +
Sbjct: 429 VDCVKFHPNS---NYLATGSTDKTVRLWSTQQGNSV--RLFTGHRGPVLSLAFSPNGKYL 483
Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
+A D+ K+WDL S ++ H + ++ + +P+ S V + S D +++ WD RS
Sbjct: 484 ASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTF--SPDSSLVASASMDNSVRVWDIRS 541
Query: 671 SN 676
S+
Sbjct: 542 SH 543
>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
Length = 265
Score = 58.5 bits (140), Expect = 1e-08
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +2
Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
+ C+ F P + N+L GS VR W Q + H GPVL + +S +G +
Sbjct: 105 VDCVKFHPNS---NYLATGSTDKTVRLWSTQQGNSV--RLFTGHRGPVLSLAFSPNGKYL 159
Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
+A D+ K+WDL S ++ H + ++ + +P+ S V + S D +++ WD RS
Sbjct: 160 ASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTF--SPDSSLVASASMDNSVRVWDIRS 217
Query: 671 SN 676
S+
Sbjct: 218 SH 219
>ref|NP_001178318.1| autophagy-related protein 16-1 [Bos taurus].
Length = 607
Score = 58.2 bits (139), Expect = 1e-08
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 378 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
DL S I+ + I CVM+G +DK ++FWD RS + + ++L +
Sbjct: 436 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 491
Query: 710 YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
D+ + + R ++ ++ + + R+ S +C + + P G
Sbjct: 492 TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 549
Query: 884 ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
A G+ EG + YI GK H S+ ++N +A+ P TV
Sbjct: 550 AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 595
Query: 1064 GSDGRFSFWGQ 1096
+ W +
Sbjct: 596 DKGSKAVLWSE 606
>ref|XP_002686606.1| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
2 [Bos taurus].
Length = 607
Score = 58.2 bits (139), Expect = 1e-08
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 378 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
DL S I+ + I CVM+G +DK ++FWD RS + + ++L +
Sbjct: 436 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 491
Query: 710 YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
D+ + + R ++ ++ + + R+ S +C + + P G
Sbjct: 492 TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 549
Query: 884 ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
A G+ EG + YI GK H S+ ++N +A+ P TV
Sbjct: 550 AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 595
Query: 1064 GSDGRFSFWGQ 1096
+ W +
Sbjct: 596 DKGSKAVLWSE 606
>ref|XP_002686605.1| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
1 [Bos taurus].
Length = 588
Score = 58.2 bits (139), Expect = 1e-08
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 359 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
DL S I+ + I CVM+G +DK ++FWD RS + + ++L +
Sbjct: 417 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 472
Query: 710 YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
D+ + + R ++ ++ + + R+ S +C + + P G
Sbjct: 473 TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 530
Query: 884 ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
A G+ EG + YI GK H S+ ++N +A+ P TV
Sbjct: 531 AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 576
Query: 1064 GSDGRFSFWGQ 1096
+ W +
Sbjct: 577 DKGSKAVLWSE 587
>ref|XP_877095.3| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
5 [Bos taurus].
Length = 588
Score = 58.2 bits (139), Expect = 1e-08
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 359 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
DL S I+ + I CVM+G +DK ++FWD RS + + ++L +
Sbjct: 417 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 472
Query: 710 YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
D+ + + R ++ ++ + + R+ S +C + + P G
Sbjct: 473 TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 530
Query: 884 ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
A G+ EG + YI GK H S+ ++N +A+ P TV
Sbjct: 531 AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 576
Query: 1064 GSDGRFSFWGQ 1096
+ W +
Sbjct: 577 DKGSKAVLWSE 587
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,138,723
Number of extensions: 1222876
Number of successful extensions: 4274
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 4057
Number of HSP's successfully gapped: 43
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008039
(1159 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543066.2| PREDICTED: similar to RAE1 RNA export 1 homolog... 626 e-179
Alignment gi|XP_852616.1| PREDICTED: similar to BUB3 budding uninhibited ... 140 2e-33
Alignment gi|XP_535049.2| PREDICTED: similar to budding uninhibited by be... 140 2e-33
Alignment gi|XP_855137.1| PREDICTED: similar to BUB3 budding uninhibited ... 85 1e-16
Alignment gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof... 64 4e-10
Alignment gi|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isof... 64 4e-10
Alignment gi|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like... 57 3e-08
Alignment gi|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like... 57 3e-08
Alignment gi|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like... 57 3e-08
Alignment gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can... 57 4e-08
>ref|XP_543066.2| PREDICTED: similar to RAE1 RNA export 1 homolog [Canis familiaris].
Length = 368
Score = 626 bits (1615), Expect = e-179
Identities = 294/300 (98%), Positives = 295/300 (98%)
Frame = +2
Query: 260 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 440 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 620 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 800 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 980 GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GTNTSAPQDIYAVNGIAFHPVHGT TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
>ref|XP_852616.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3
isoform a isoform 3 [Canis familiaris].
Length = 248
Score = 140 bits (354), Expect = 2e-33
Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 1/213 (0%)
Frame = +2
Query: 524 MWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 703
M DLN++Q + HDAP++ + + P + ++TGSWD+T+K WD R+ PE
Sbjct: 1 MHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPE 58
Query: 704 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 883
+ Y V +V TA R ++V+ L N +R ES LK+Q RC+ F +KQ G+
Sbjct: 59 KVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GY 114
Query: 884 ALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCT 1060
L SIEGRVA+ Y++P P K + FKCHR N + IY VN I+FH +H T T
Sbjct: 115 VLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFAT 171
Query: 1061 VGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GSDG + W + +L + I+ F
Sbjct: 172 GGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 204
>ref|XP_535049.2| PREDICTED: similar to budding uninhibited by benzimidazoles 3 homolog
isoform 1 [Canis familiaris].
Length = 246
Score = 140 bits (354), Expect = 2e-33
Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 1/213 (0%)
Frame = +2
Query: 524 MWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 703
M DLN++Q + HDAP++ + + P + ++TGSWD+T+K WD R+ PE
Sbjct: 1 MHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPE 58
Query: 704 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 883
+ Y V +V TA R ++V+ L N +R ES LK+Q RC+ F +KQ G+
Sbjct: 59 KVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GY 114
Query: 884 ALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCT 1060
L SIEGRVA+ Y++P P K + FKCHR N + IY VN I+FH +H T T
Sbjct: 115 VLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFAT 171
Query: 1061 VGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GSDG + W + +L + I+ F
Sbjct: 172 GGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 204
>ref|XP_855137.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3
isoform a [Canis familiaris].
Length = 292
Score = 85.1 bits (209), Expect = 1e-16
Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Frame = +2
Query: 596 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV----------- 742
+++PN S + SW + + SS ++ ++LP R + P
Sbjct: 58 LRSPNLSALRPPSW-LFQRAAEEASSTCLIFIKLPGRSISSVKFSPNTSQFLLVSSWDIS 116
Query: 743 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 922
V + ++V+ L N + + ES LK+Q RC+ F +KQ G+ L SI+GRVA Y
Sbjct: 117 VRLYDAAVLVWDLRNMGNVQQCRESRLKYQTRCIRAFPNKQ----GYVLSSIKGRVAFEY 172
Query: 923 INPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDA 1102
++P + FKCHR G + + IY VN I+FH +H T GSDG + W
Sbjct: 173 LDPSPEEQKKHAFKCHRLKGNSI---EQIYPVNAISFHNIHDMFATGGSDGSVNIWDPFN 229
Query: 1103 RTKLKTSEQLDQPISGCCF 1159
+ +L Q I+ F
Sbjct: 230 KKRLCQFYQYPTSIASLAF 248
>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
familiaris].
Length = 406
Score = 63.5 bits (153), Expect = 4e-10
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 62 DAVTCVNFSPS---GHLLASGSRDKTVRIWIPNVKGEST--VFRAHTATVRSVHFCSDGQ 116
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
+ TAS DKT K+W + + + ++QH I+W++ +S +++ S DKT+K
Sbjct: 117 SLVTASDDKTVKVWSTHRQKFLFSLSQH------INWVRCARFSPDGRLIVSASDDKTVK 170
Query: 653 FWDTRS 670
WD S
Sbjct: 171 LWDKTS 176
Score = 49.3 bits (116), Expect = 7e-06
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G L+ S V+ W +Q H V +S DG + +AS DKT K+W
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQKFLFSLSQ--HINWVRCARFSPDGRLIVSASDDKTVKLW 172
Query: 530 DLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
D S + + +H V + + P+ +C+ S D T+K WD R+ + QL
Sbjct: 173 DKTSRECVHSYCEHGGFVTYVDF--HPSGTCIAAASMDNTVKVWDVRTHRLLQHYQL 227
>ref|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isoform 2 [Canis
familiaris].
Length = 388
Score = 63.5 bits (153), Expect = 4e-10
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 62 DAVTCVNFSPS---GHLLASGSRDKTVRIWIPNVKGEST--VFRAHTATVRSVHFCSDGQ 116
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
+ TAS DKT K+W + + + ++QH I+W++ +S +++ S DKT+K
Sbjct: 117 SLVTASDDKTVKVWSTHRQKFLFSLSQH------INWVRCARFSPDGRLIVSASDDKTVK 170
Query: 653 FWDTRS 670
WD S
Sbjct: 171 LWDKTS 176
>ref|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like)
isoform 3 [Canis familiaris].
Length = 623
Score = 57.0 bits (136), Expect = 3e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 394 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 451
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I CVM+G +DK ++FWD RS + + ++L
Sbjct: 452 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMEL 503
>ref|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like (APG16-like)
isoform 1 [Canis familiaris].
Length = 588
Score = 57.0 bits (136), Expect = 3e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 359 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I CVM+G +DK ++FWD RS + + ++L
Sbjct: 417 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMEL 468
>ref|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like)
isoform 2 [Canis familiaris].
Length = 607
Score = 57.0 bits (136), Expect = 3e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 378 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I CVM+G +DK ++FWD RS + + ++L
Sbjct: 436 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMEL 487
>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris].
Length = 833
Score = 56.6 bits (135), Expect = 4e-08
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D + + FSP GN L + S VR W G++ + HT PV V +S DG
Sbjct: 416 DVVTSVQFSPL---GNLLASASRDRTVRLWIPDKRGKS--SEFKAHTAPVRSVDFSADGQ 470
Query: 488 KVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLKF 655
+ TAS DK+ K+W++ + + + + HW++ +S +++ S DKT+K
Sbjct: 471 FLATASEDKSIKVWNMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI 525
Query: 656 WDT 664
WDT
Sbjct: 526 WDT 528
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,112,217
Number of extensions: 1255127
Number of successful extensions: 4513
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 4245
Number of HSP's successfully gapped: 44
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008039
(1159 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098766.1| mRNA export factor [Sus scrofa]. 626 e-180
Alignment gi|XP_001928080.1| PREDICTED: mitotic checkpoint protein BUB3 i... 175 5e-44
Alignment gi|XP_003359438.1| PREDICTED: mitotic checkpoint protein BUB3 [... 175 5e-44
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 63 4e-10
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 62 8e-10
Alignment gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/... 56 3e-08
Alignment gi|NP_001177202.1| autophagy-related protein 16-1 isoform 2 [Su... 55 6e-08
Alignment gi|NP_001177201.1| autophagy-related protein 16-1 isoform 1 [Su... 55 6e-08
Alignment gi|NP_999497.1| guanine nucleotide-binding protein subunit beta... 55 1e-07
Alignment gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l... 54 2e-07
>ref|NP_001098766.1| mRNA export factor [Sus scrofa].
Length = 368
Score = 626 bits (1615), Expect = e-180
Identities = 294/300 (98%), Positives = 295/300 (98%)
Frame = +2
Query: 260 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 440 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 620 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 800 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 980 GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GTNTSAPQDIYAVNGIAFHPVHGT TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
>ref|XP_001928080.1| PREDICTED: mitotic checkpoint protein BUB3 isoform 2 [Sus scrofa].
Length = 326
Score = 175 bits (443), Expect = 5e-44
Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
Frame = +2
Query: 281 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 6 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60
Query: 461 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 61 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117
Query: 641 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 118 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177
Query: 821 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 178 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231
Query: 998 PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
+ IY VN I+FH +H T T GSDG + W + +L + I+ F
Sbjct: 232 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284
>ref|XP_003359438.1| PREDICTED: mitotic checkpoint protein BUB3 [Sus scrofa].
Length = 328
Score = 175 bits (443), Expect = 5e-44
Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
Frame = +2
Query: 281 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 6 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60
Query: 461 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 61 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117
Query: 641 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 118 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177
Query: 821 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 178 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231
Query: 998 PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
+ IY VN I+FH +H T T GSDG + W + +L + I+ F
Sbjct: 232 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 62.8 bits (151), Expect = 4e-10
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 62 DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNIKGEST--VFRAHTATVRSVHFCSDGQ 116
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
TAS DKT K+W + + + ++QH I+W++ +S +++ S DKT+K
Sbjct: 117 SFVTASDDKTIKVWSTHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170
Query: 653 FWDTRS 670
WD S
Sbjct: 171 LWDKTS 176
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 61.6 bits (148), Expect = 8e-10
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
K ++ + + C +F+P + N +++GS+ VR W+V+ +G+ + K H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174
Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
V ++ DGS + ++S D ++WD S Q ++ I + PV + + +PN ++
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232
Query: 632 SWDKTLKFWD 661
+ D TLK WD
Sbjct: 233 TLDNTLKLWD 242
Score = 54.3 bits (129), Expect = 1e-07
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = +2
Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
++ + FSP G +L + S ++ W D K H + DV WS D +
Sbjct: 47 AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101
Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
+ +AS DKT K+WD++S + ++ + H V ++ P + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159
Query: 668 SSNPMMVL 691
+ + L
Sbjct: 160 TGKCLKTL 167
>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L [Sus scrofa].
Length = 589
Score = 56.2 bits (134), Expect = 3e-08
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +2
Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
+ C+ F P + N+L GS VR W Q + H GPVL + +S +G +
Sbjct: 429 VDCVKFHPNS---NYLATGSTDKTVRLWSAQQGNSV--RLFTGHRGPVLSLAFSPNGKYL 483
Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
+A D+ K+WDL S ++ H + ++ + +P+ S + + S D +++ WD R+
Sbjct: 484 ASAGEDQRLKLWDLASGTLFKELRGHTDNITSLTF--SPDSSLIASASMDNSVRVWDIRN 541
Query: 671 SN 676
++
Sbjct: 542 TH 543
>ref|NP_001177202.1| autophagy-related protein 16-1 isoform 2 [Sus scrofa].
Length = 588
Score = 55.5 bits (132), Expect = 6e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K W
Sbjct: 359 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKHW 416
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I + CVM+G +DK ++FWD RS + + ++L
Sbjct: 417 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESIVREMEL 468
>ref|NP_001177201.1| autophagy-related protein 16-1 isoform 1 [Sus scrofa].
Length = 607
Score = 55.5 bits (132), Expect = 6e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G++L+A S R W V D + H+G VL + D +++ + S D+T K W
Sbjct: 378 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKHW 435
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I + CVM+G +DK ++FWD RS + + ++L
Sbjct: 436 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESIVREMEL 487
>ref|NP_999497.1| guanine nucleotide-binding protein subunit beta-2-like 1 [Sus
scrofa].
Length = 317
Score = 54.7 bits (130), Expect = 1e-07
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G F ++GSW +R W++ T + HT VL V +S D ++ + S DKT K+W
Sbjct: 75 GQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Query: 530 DLNS--NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 661
+ +Q H V + + + +++ WDK +K W+
Sbjct: 133 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
Length = 330
Score = 53.9 bits (128), Expect = 2e-07
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
+++ + FSP G +L + S + W D KA + H+ + DV WS D
Sbjct: 42 EAVSSVKFSPN---GEWLASSSADKVIIIWGAYDG--KYEKALKGHSLEISDVAWSSDSG 96
Query: 488 KVFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 664
++ +AS DKT K+WD+ + ++ + H V ++ P + +++GS+D+++K W+
Sbjct: 97 RLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNF--NPPSNLIISGSFDESVKIWEV 154
Query: 665 RSSNPMMVL 691
++ + L
Sbjct: 155 KTGRCLKTL 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,032,644
Number of extensions: 780336
Number of successful extensions: 2762
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 2624
Number of HSP's successfully gapped: 33
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008039
(1159 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780321.1| mRNA export factor [Mus musculus]. 625 e-179
Alignment gi|NP_033904.2| mitotic checkpoint protein BUB3 [Mus musculus]. 175 7e-44
Alignment gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus]. 64 3e-10
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 62 1e-09
Alignment gi|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus]. 60 3e-09
Alignment gi|NP_001192321.1| autophagy-related protein 16-1 isoform 3 [Mu... 56 5e-08
Alignment gi|NP_001192320.1| autophagy-related protein 16-1 isoform 1 [Mu... 56 5e-08
Alignment gi|NP_084122.2| autophagy-related protein 16-1 isoform 2 [Mus m... 56 5e-08
Alignment gi|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus mus... 56 6e-08
Alignment gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated... 55 8e-08
>ref|NP_780321.1| mRNA export factor [Mus musculus].
Length = 368
Score = 625 bits (1612), Expect = e-179
Identities = 293/300 (97%), Positives = 295/300 (98%)
Frame = +2
Query: 260 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 440 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 620 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 800 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 980 GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GTNTSAPQDIYAVNGIAFHPVHGT TVGSDGRFSFW +DARTKLKTSEQLDQPI+ CCF
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIAACCF 323
>ref|NP_033904.2| mitotic checkpoint protein BUB3 [Mus musculus].
Length = 326
Score = 175 bits (443), Expect = 7e-44
Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
Frame = +2
Query: 281 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 6 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60
Query: 461 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 61 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117
Query: 641 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 118 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177
Query: 821 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 178 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231
Query: 998 PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
+ IY VN I+FH +H T T GSDG + W + +L + I+ F
Sbjct: 232 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284
>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
Length = 405
Score = 63.5 bits (153), Expect = 3e-10
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 62 DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
+ TAS DKT K+W + + + + QH I+W++ +S +++ S DKT+K
Sbjct: 117 SLVTASDDKTVKVWSTHRQRFLFSLTQH------INWVRCAKFSPDGRLIVSASDDKTVK 170
Query: 653 FWDTRS 670
WD S
Sbjct: 171 LWDKTS 176
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 61.6 bits (148), Expect = 1e-09
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
K ++ + + C +F+P + N +++GS+ VR W+V+ +G+ + K H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174
Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
V ++ DGS + ++S D ++WD S Q ++ I + PV + + +PN ++
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232
Query: 632 SWDKTLKFWD 661
+ D TLK WD
Sbjct: 233 TLDNTLKLWD 242
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = +2
Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
++ + FSP G +L + S ++ W D K H + DV WS D +
Sbjct: 47 AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101
Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
+ +AS DKT K+WD++S + ++ + H V ++ P + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159
Query: 668 SSNPMMVL 691
+ + L
Sbjct: 160 TGKCLKTL 167
>ref|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].
Length = 476
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D + L FSP GN L + S VR W + G++ + HT PV V +S DG
Sbjct: 61 DVVTSLQFSPQ---GNLLASASRDRTVRLWVLDRKGKS--SEFKAHTAPVRSVDFSADGQ 115
Query: 488 KVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLKF 655
+ TAS DK+ K+W + + + + + HW++ +S +++ S DKT+K
Sbjct: 116 LLVTASEDKSIKVWSMFRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI 170
Query: 656 WDT 664
WDT
Sbjct: 171 WDT 173
>ref|NP_001192321.1| autophagy-related protein 16-1 isoform 3 [Mus musculus].
Length = 588
Score = 56.2 bits (134), Expect = 5e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G +L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 359 GAYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I + CVM+G +DK ++FWD RS + + ++L
Sbjct: 417 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESVVREMEL 468
>ref|NP_001192320.1| autophagy-related protein 16-1 isoform 1 [Mus musculus].
Length = 623
Score = 56.2 bits (134), Expect = 5e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G +L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 394 GAYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 451
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I + CVM+G +DK ++FWD RS + + ++L
Sbjct: 452 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESVVREMEL 503
>ref|NP_084122.2| autophagy-related protein 16-1 isoform 2 [Mus musculus].
Length = 607
Score = 56.2 bits (134), Expect = 5e-08
Identities = 35/116 (30%), Positives = 57/116 (49%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G +L+A S R W V D + H+G VL + D +++ + S D+T K+W
Sbjct: 378 GAYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435
Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
DL S I+ + I + CVM+G +DK ++FWD RS + + ++L
Sbjct: 436 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESVVREMEL 487
>ref|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus musculus].
Length = 658
Score = 55.8 bits (133), Expect = 6e-08
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
G F+ +GS +++ W+++ G + H+ V + +S DG + +A+ D T K+W
Sbjct: 117 GEFVASGSQDTNIKLWDIRRKGCVF--RYRGHSQAVRCLRFSPDGKWLASAADDHTVKLW 174
Query: 530 DLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 661
DL + + + + H PV + + PN + +GS D+T++FWD
Sbjct: 175 DLTAGKMMSEFPGHTGPVNVVEF--HPNEYLLASGSSDRTIRFWD 217
>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L [Mus musculus].
Length = 589
Score = 55.5 bits (132), Expect = 8e-08
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Frame = +2
Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
+ C+ F P + N+L GS VR W Q + H GPVL + +S +G +
Sbjct: 429 VDCVKFHPNS---NYLATGSTDKTVRLWSAQQGNSV--RLFTGHRGPVLSLSFSPNGKYL 483
Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
+A D+ K+WDL S ++ H + ++ + +P+ + + S D +++ WD RS
Sbjct: 484 ASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAF--SPDSGLIASASMDNSVRVWDIRS 541
Query: 671 S 673
+
Sbjct: 542 T 542
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,308,063
Number of extensions: 1048434
Number of successful extensions: 3564
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3368
Number of HSP's successfully gapped: 34
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008039
(1159 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003601.1| mRNA export factor [Homo sapiens]. 624 e-179
Alignment gi|NP_001015885.1| mRNA export factor [Homo sapiens]. 624 e-179
Alignment gi|NP_001007794.1| mitotic checkpoint protein BUB3 isoform b [H... 175 8e-44
Alignment gi|NP_004716.1| mitotic checkpoint protein BUB3 isoform a [Homo... 175 8e-44
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 62 8e-10
Alignment gi|NP_001155053.1| POC1 centriolar protein homolog A isoform 3 ... 62 8e-10
Alignment gi|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 ... 62 8e-10
Alignment gi|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Ho... 62 8e-10
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 62 1e-09
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 62 1e-09
>ref|NP_003601.1| mRNA export factor [Homo sapiens].
Length = 368
Score = 624 bits (1610), Expect = e-179
Identities = 293/300 (97%), Positives = 295/300 (98%)
Frame = +2
Query: 260 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 440 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL+SNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 620 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 800 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 980 GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GTNTSAPQDIYAVNGIAFHPVHGT TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
>ref|NP_001015885.1| mRNA export factor [Homo sapiens].
Length = 368
Score = 624 bits (1610), Expect = e-179
Identities = 293/300 (97%), Positives = 295/300 (98%)
Frame = +2
Query: 260 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83
Query: 440 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL+SNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 620 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203
Query: 800 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204 FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263
Query: 980 GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
GTNTSAPQDIYAVNGIAFHPVHGT TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323
>ref|NP_001007794.1| mitotic checkpoint protein BUB3 isoform b [Homo sapiens].
Length = 326
Score = 175 bits (443), Expect = 8e-44
Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
Frame = +2
Query: 281 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 6 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60
Query: 461 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 61 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117
Query: 641 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 118 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177
Query: 821 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 178 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231
Query: 998 PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
+ IY VN I+FH +H T T GSDG + W + +L + I+ F
Sbjct: 232 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284
>ref|NP_004716.1| mitotic checkpoint protein BUB3 isoform a [Homo sapiens].
Length = 328
Score = 175 bits (443), Expect = 8e-44
Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
Frame = +2
Query: 281 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
+ ++ P+D I + FSP T FL+ SW VR ++V + + + HTG VL
Sbjct: 6 EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60
Query: 461 DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
D C D + ++ D KM DLN++Q + HDAP++ + + P + ++TGSWD
Sbjct: 61 D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117
Query: 641 KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
+T+K WD R+ PE+ Y V +V TA R ++V+ L N +R ES
Sbjct: 118 QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177
Query: 821 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
LK+Q RC+ F +KQ G+ L SIEGRVA+ Y++P P K + FKCHR N
Sbjct: 178 LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231
Query: 998 PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
+ IY VN I+FH +H T T GSDG + W + +L + I+ F
Sbjct: 232 -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 62.4 bits (150), Expect = 8e-10
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +2
Query: 326 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 505
+FSP G L+ GS V WE + SGQ + + HTGPV +S DG +AS
Sbjct: 28 AFSPD---GQMLLTGSEDGCVYGWETR-SGQLLWRLGG-HTGPVKFCRFSPDGHLFASAS 82
Query: 506 CDKTAKMWDLNSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 682
CD T ++WD+ + +++ + H V+T+ + +P+ + +G WDK + WD +S +
Sbjct: 83 CDCTVRLWDVARAKCLRVLKGHQRSVETVSF--SPDSRQLASGGWDKRVMLWDVQSGQML 140
Query: 683 MVL 691
+L
Sbjct: 141 RLL 143
>ref|NP_001155053.1| POC1 centriolar protein homolog A isoform 3 [Homo sapiens].
Length = 369
Score = 62.4 bits (150), Expect = 8e-10
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 24 DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 78
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
TAS DKT K+W + + + ++QH I+W++ +S +++ S DKT+K
Sbjct: 79 SFVTASDDKTVKVWATHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 132
Query: 653 FWDTRS 670
WD S
Sbjct: 133 LWDKSS 138
>ref|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 [Homo sapiens].
Length = 359
Score = 62.4 bits (150), Expect = 8e-10
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 62 DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
TAS DKT K+W + + + ++QH I+W++ +S +++ S DKT+K
Sbjct: 117 SFVTASDDKTVKVWATHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170
Query: 653 FWDTRS 670
WD S
Sbjct: 171 LWDKSS 176
>ref|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Homo sapiens].
Length = 407
Score = 62.4 bits (150), Expect = 8e-10
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +2
Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
D++ C++FSP G+ L +GS VR W G++ + HT V V + DG
Sbjct: 62 DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116
Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
TAS DKT K+W + + + ++QH I+W++ +S +++ S DKT+K
Sbjct: 117 SFVTASDDKTVKVWATHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170
Query: 653 FWDTRS 670
WD S
Sbjct: 171 LWDKSS 176
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 61.6 bits (148), Expect = 1e-09
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
K ++ + + C +F+P + N +++GS+ VR W+V+ +G+ + K H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174
Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
V ++ DGS + ++S D ++WD S Q ++ I + PV + + +PN ++
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232
Query: 632 SWDKTLKFWD 661
+ D TLK WD
Sbjct: 233 TLDNTLKLWD 242
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = +2
Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
++ + FSP G +L + S ++ W D K H + DV WS D +
Sbjct: 47 AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101
Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
+ +AS DKT K+WD++S + ++ + H V ++ P + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159
Query: 668 SSNPMMVL 691
+ + L
Sbjct: 160 TGKCLKTL 167
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 61.6 bits (148), Expect = 1e-09
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
K ++ + + C +F+P + N +++GS+ VR W+V+ +G+ + K H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174
Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
V ++ DGS + ++S D ++WD S Q ++ I + PV + + +PN ++
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232
Query: 632 SWDKTLKFWD 661
+ D TLK WD
Sbjct: 233 TLDNTLKLWD 242
Score = 54.3 bits (129), Expect = 2e-07
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = +2
Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
++ + FSP G +L + S ++ W D K H + DV WS D +
Sbjct: 47 AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101
Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
+ +AS DKT K+WD++S + ++ + H V ++ P + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159
Query: 668 SSNPMMVL 691
+ + L
Sbjct: 160 TGKCLKTL 167
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,259,896
Number of extensions: 1238825
Number of successful extensions: 4230
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 3993
Number of HSP's successfully gapped: 44
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008039
(1159 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 357 9e-96
>Sscrofa_Chr17
|| Length = 69701581
Score = 357 bits (180), Expect = 9e-96
Identities = 183/184 (99%)
Strand = Plus / Plus
Query: 1 gcgcatgcgcagcggcccccacggtaaatagggcagtttcttaggccagcgtgagacctc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 64916083 gcgcatgcgcagcggcccccacggtaaatagggcagttttttaggccagcgtgagacctc 64916142
Query: 61 gaggtcggaagataactgtcgctgccgccttgccttcgcctcgtccacgcccgagccggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64916143 gaggtcggaagataactgtcgctgccgccttgccttcgcctcgtccacgcccgagccggg 64916202
Query: 121 tcacaggctcctgagctctttctgctccccgtcgtcggcttccctccgcggcgcgactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64916203 tcacaggctcctgagctctttctgctccccgtcgtcggcttccctccgcggcgcgactct 64916262
Query: 181 cagg 184
||||
Sbjct: 64916263 cagg 64916266
Score = 218 bits (110), Expect = 5e-54
Identities = 139/146 (95%), Gaps = 2/146 (1%)
Strand = Plus / Plus
Query: 1015 ggtaaacgggatcgcattccatcctgttcacggcaccccttgc-accgtggggtctgatg 1073
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 64931126 ggtaaacgggatcgcattccatcctgttcacggca-cccttgcaaccgtggggtctgatg 64931184
Query: 1074 gtagattcagcttctggggacaagatgccagaacaaaactcaaaacttcggagcagttag 1133
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 64931185 gtagattcagcttctgggacaaagatgccagaacaaaactcaaaacttcggagcagttag 64931244
Query: 1134 accagccaatatcgggctgctgcttc 1159
||||||||||||||| |||||||||
Sbjct: 64931245 accagccaatatcggcttgctgcttc 64931270
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 279 aggatattgaagtaacatcctctcctgacgatagcattggttgtctatcttttagcccac 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64920031 aggatattgaagtaacatcctctcctgacgatagcattggttgtctatcttttagcccac 64920090
Query: 339 ccaccttgccggggaactttctcattgcaggatcgtgggctaacgatgt 387
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64920091 ccaccttgccggggaactttctcattgcaggatcgtgggctaacgatgt 64920139
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 724 gatataccctatggccgtggtggcaactgcagagaggggcctgattgtctatcagctgga 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64927571 gatataccctatggccgtggtggcaactgcagagaggggcctgattgtctatcagctgga 64927630
Query: 784 gaatcagccctctgaattcaggaggatagaatcgccgctgaaacaccag 832
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64927631 gaatcagccctctgaattcaggaggatagaatcgccgctgaaacaccag 64927679
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 831 agcatcggtgtgtggccatttttaaagacaaacagaacaagccgaccggtttcgccctgg 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64930306 agcatcggtgtgtggccatttttaaagacaaacagaacaagccgaccggtttcgccctgg 64930365
Query: 891 ggagcatcgaggggagagtcgccattcactacatcaaccctccgaaccc 939
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64930366 ggagcatcgaggggagagtcgccattcactacatcaaccctccgaaccc 64930414
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 182 agggccaaaatgagtctgtttggaacaacctcgggttttggaaccagtgggactagcatg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64919386 agggccaaaatgagtctgtttggaacaacctcgggttttggaaccagtgggactagcatg 64919445
Query: 242 tttggcagcacaaccacagataatcacaaccctatgaagg 281
||||||||||||||||||||||||||||||||||||||||
Sbjct: 64919446 tttggcagcacaaccacagataatcacaaccctatgaagg 64919485
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 386 gttcgctgttgggaagttcaggatagtggacagactattccaaaagctcagcagatgcac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64921508 gttcgctgttgggaagttcaggatagtggacagactattccaaaagctcagcagatgcac 64921567
Query: 446 actgggcccgtgcttgatgtctgctggagtgatg 479
||||||||||||||||||||||||||||||||||
Sbjct: 64921568 actgggcccgtgcttgatgtctgctggagtgatg 64921601
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 564 agcatgatgctcctgttaaaaccatacattggatcaaagcaccaaactacagctgtgtga 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64925851 agcatgatgctcctgttaaaaccatacattggatcaaagcaccaaactacagctgtgtga 64925910
Query: 624 tgacggggagctgggataagacgttgaag 652
|||||||||||||||||||||||||||||
Sbjct: 64925911 tgacggggagctgggataagacgttgaag 64925939
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 479 gatgggagcaaagtatttacagcatcatgtgataaaactgccaaaatgtgggacctcaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64924521 gatgggagcaaagtatttacagcatcatgtgataaaactgccaaaatgtgggacctcaac 64924580
Query: 539 agtaaccaggcgatacagattgcacag 565
|||||||||||||||||||||||||||
Sbjct: 64924581 agtaaccaggcgatacagattgcacag 64924607
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 943 caaagataacttcaccttcaagtgtcatcgctctaacgggaccaacacgtccgctccgca 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64930497 caaagataacttcaccttcaagtgtcatcgctctaacgggaccaacacgtccgctccgca 64930556
Query: 1003 ggacatctacgcggta 1018
||||||||||||||||
Sbjct: 64930557 ggacatctacgcggta 64930572
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 651 agttttgggatacacggtcatcaaatcctatgatggttttgcagctccctgaaaggtgtt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64926044 agttttgggatacacggtcatcaaatcctatgatggttttgcagctccctgaaaggtgtt 64926103
Query: 711 actgtgctgacgtg 724
||||||||||||||
Sbjct: 64926104 actgtgctgacgtg 64926117
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,353,004
Number of extensions: 135
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 1159
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1138
Effective length of database: 2,808,413,156
Effective search space: 3195974171528
Effective search space used: 3195974171528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)