Animal-Genome cDNA 20110601C-008039


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008039
         (1159 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001015585.1| mRNA export factor [Bos taurus].                  626   e-179
Alignment   gi|NP_001069645.1| mitotic checkpoint protein BUB3 [Bos taurus].     175   8e-44
Alignment   gi|NP_001033649.1| POC1 centriolar protein homolog A [Bos tauru...    63   4e-10
Alignment   gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].       62   1e-09
Alignment   gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li...    59   1e-08
Alignment   gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part...    59   1e-08
Alignment   gi|NP_001178318.1| autophagy-related protein 16-1 [Bos taurus].       58   1e-08
Alignment   gi|XP_002686606.1| PREDICTED: ATG16 autophagy related 16-like 1...    58   1e-08
Alignment   gi|XP_002686605.1| PREDICTED: ATG16 autophagy related 16-like 1...    58   1e-08
Alignment   gi|XP_877095.3| PREDICTED: ATG16 autophagy related 16-like 1 (S...    58   1e-08

>ref|NP_001015585.1| mRNA export factor [Bos taurus].
          Length = 368

 Score =  626 bits (1614), Expect = e-179
 Identities = 293/300 (97%), Positives = 295/300 (98%)
 Frame = +2

Query: 260  DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
            DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24   DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83

Query: 440  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
            MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKT+HWIKAPNYSC
Sbjct: 84   MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTVHWIKAPNYSC 143

Query: 620  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
            VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203

Query: 800  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
            FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263

Query: 980  GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
            GTNTSAPQDIYAVNGIAFHPVHGT  TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264  GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323


>ref|NP_001069645.1| mitotic checkpoint protein BUB3 [Bos taurus].
          Length = 326

 Score =  175 bits (443), Expect = 8e-44
 Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
 Frame = +2

Query: 281  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
            + ++   P+D I  + FSP T    FL+  SW   VR ++V  +   +   +  HTG VL
Sbjct: 6    EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60

Query: 461  DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
            D C   D +  ++   D   KM DLN++Q   +  HDAP++ + +   P  + ++TGSWD
Sbjct: 61   D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117

Query: 641  KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
            +T+K WD R+         PE+ Y   V     +V TA R ++V+ L N     +R ES 
Sbjct: 118  QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177

Query: 821  LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
            LK+Q RC+  F +KQ    G+ L SIEGRVA+ Y++P P   K  + FKCHR    N   
Sbjct: 178  LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231

Query: 998  PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             + IY VN I+FH +H T  T GSDG  + W    + +L    +    I+   F
Sbjct: 232  -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284


>ref|NP_001033649.1| POC1 centriolar protein homolog A [Bos taurus].
          Length = 407

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 62  DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
              TAS DKT K+W  +  + +  ++QH      I+W++   +S     +++ S DKT+K
Sbjct: 117 SFVTASDDKTVKVWSTHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170

Query: 653 FWDTRS 670
            WD  S
Sbjct: 171 LWDKTS 176


>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
          Length = 334

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +2

Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
           K ++      + + C +F+P +   N +++GS+   VR W+V+ +G+ + K    H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174

Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
             V ++ DGS + ++S D   ++WD  S Q ++  I   + PV  + +  +PN   ++  
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232

Query: 632 SWDKTLKFWD 661
           + D TLK WD
Sbjct: 233 TLDNTLKLWD 242



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = +2

Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
           ++  + FSP    G +L + S    ++ W   D      K    H   + DV WS D + 
Sbjct: 47  AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101

Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
           + +AS DKT K+WD++S + ++ +  H   V   ++   P  + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159

Query: 668 SSNPMMVL 691
           +   +  L
Sbjct: 160 TGKCLKTL 167


>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
          Length = 589

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
 Frame = +2

Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
           + C+ F P +   N+L  GS    VR W  Q       +    H GPVL + +S +G  +
Sbjct: 429 VDCVKFHPNS---NYLATGSTDKTVRLWSTQQGNSV--RLFTGHRGPVLSLAFSPNGKYL 483

Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
            +A  D+  K+WDL S     ++  H   + ++ +  +P+ S V + S D +++ WD RS
Sbjct: 484 ASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTF--SPDSSLVASASMDNSVRVWDIRS 541

Query: 671 SN 676
           S+
Sbjct: 542 SH 543


>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
          Length = 265

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
 Frame = +2

Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
           + C+ F P +   N+L  GS    VR W  Q       +    H GPVL + +S +G  +
Sbjct: 105 VDCVKFHPNS---NYLATGSTDKTVRLWSTQQGNSV--RLFTGHRGPVLSLAFSPNGKYL 159

Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
            +A  D+  K+WDL S     ++  H   + ++ +  +P+ S V + S D +++ WD RS
Sbjct: 160 ASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTF--SPDSSLVASASMDNSVRVWDIRS 217

Query: 671 SN 676
           S+
Sbjct: 218 SH 219


>ref|NP_001178318.1| autophagy-related protein 16-1 [Bos taurus].
          Length = 607

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
 Frame = +2

Query: 350  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
            G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 378  GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435

Query: 530  DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
            DL S   I+     +    I         CVM+G +DK ++FWD RS + +  ++L  + 
Sbjct: 436  DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 491

Query: 710  YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
               D+      + +  R  ++  ++ + +  R+  S      +C + +      P G   
Sbjct: 492  TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 549

Query: 884  ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
            A G+ EG +   YI     GK       H S+           ++N +A+ P      TV
Sbjct: 550  AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 595

Query: 1064 GSDGRFSFWGQ 1096
                +   W +
Sbjct: 596  DKGSKAVLWSE 606


>ref|XP_002686606.1| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
            2 [Bos taurus].
          Length = 607

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
 Frame = +2

Query: 350  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
            G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 378  GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435

Query: 530  DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
            DL S   I+     +    I         CVM+G +DK ++FWD RS + +  ++L  + 
Sbjct: 436  DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 491

Query: 710  YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
               D+      + +  R  ++  ++ + +  R+  S      +C + +      P G   
Sbjct: 492  TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 549

Query: 884  ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
            A G+ EG +   YI     GK       H S+           ++N +A+ P      TV
Sbjct: 550  AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 595

Query: 1064 GSDGRFSFWGQ 1096
                +   W +
Sbjct: 596  DKGSKAVLWSE 606


>ref|XP_002686605.1| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
            1 [Bos taurus].
          Length = 588

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
 Frame = +2

Query: 350  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
            G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 359  GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416

Query: 530  DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
            DL S   I+     +    I         CVM+G +DK ++FWD RS + +  ++L  + 
Sbjct: 417  DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 472

Query: 710  YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
               D+      + +  R  ++  ++ + +  R+  S      +C + +      P G   
Sbjct: 473  TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 530

Query: 884  ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
            A G+ EG +   YI     GK       H S+           ++N +A+ P      TV
Sbjct: 531  AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 576

Query: 1064 GSDGRFSFWGQ 1096
                +   W +
Sbjct: 577  DKGSKAVLWSE 587


>ref|XP_877095.3| PREDICTED: ATG16 autophagy related 16-like 1 (S. cerevisiae) isoform
            5 [Bos taurus].
          Length = 588

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 2/251 (0%)
 Frame = +2

Query: 350  GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
            G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 359  GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416

Query: 530  DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 709
            DL S   I+     +    I         CVM+G +DK ++FWD RS + +  ++L  + 
Sbjct: 417  DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKI 472

Query: 710  YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--F 883
               D+      + +  R  ++  ++ + +  R+  S      +C + +      P G   
Sbjct: 473  TALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFS--APGFKCGSDWTRAVFSPDGSYV 530

Query: 884  ALGSIEGRVAIHYINPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTV 1063
            A G+ EG +   YI     GK       H S+           ++N +A+ P      TV
Sbjct: 531  AAGAAEGSL---YIWNVLSGKVEKVLSKHHSS-----------SINAVAWSPAGSHVVTV 576

Query: 1064 GSDGRFSFWGQ 1096
                +   W +
Sbjct: 577  DKGSKAVLWSE 587


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,138,723
Number of extensions: 1222876
Number of successful extensions: 4274
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 4057
Number of HSP's successfully gapped: 43
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008039
         (1159 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_543066.2| PREDICTED: similar to RAE1 RNA export 1 homolog...   626   e-179
Alignment   gi|XP_852616.1| PREDICTED: similar to BUB3 budding uninhibited ...   140   2e-33
Alignment   gi|XP_535049.2| PREDICTED: similar to budding uninhibited by be...   140   2e-33
Alignment   gi|XP_855137.1| PREDICTED: similar to BUB3 budding uninhibited ...    85   1e-16
Alignment   gi|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isof...    64   4e-10
Alignment   gi|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isof...    64   4e-10
Alignment   gi|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like...    57   3e-08
Alignment   gi|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like...    57   3e-08
Alignment   gi|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like...    57   3e-08
Alignment   gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can...    57   4e-08

>ref|XP_543066.2| PREDICTED: similar to RAE1 RNA export 1 homolog [Canis familiaris].
          Length = 368

 Score =  626 bits (1615), Expect = e-179
 Identities = 294/300 (98%), Positives = 295/300 (98%)
 Frame = +2

Query: 260  DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
            DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24   DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83

Query: 440  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
            MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84   MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 143

Query: 620  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
            VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203

Query: 800  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
            FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263

Query: 980  GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
            GTNTSAPQDIYAVNGIAFHPVHGT  TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264  GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323


>ref|XP_852616.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3
            isoform a isoform 3 [Canis familiaris].
          Length = 248

 Score =  140 bits (354), Expect = 2e-33
 Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 1/213 (0%)
 Frame = +2

Query: 524  MWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 703
            M DLN++Q   +  HDAP++ + +   P  + ++TGSWD+T+K WD R+         PE
Sbjct: 1    MHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPE 58

Query: 704  RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 883
            + Y   V     +V TA R ++V+ L N     +R ES LK+Q RC+  F +KQ    G+
Sbjct: 59   KVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GY 114

Query: 884  ALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCT 1060
             L SIEGRVA+ Y++P P   K  + FKCHR    N    + IY VN I+FH +H T  T
Sbjct: 115  VLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFAT 171

Query: 1061 VGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             GSDG  + W    + +L    +    I+   F
Sbjct: 172  GGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 204


>ref|XP_535049.2| PREDICTED: similar to budding uninhibited by benzimidazoles 3 homolog
            isoform 1 [Canis familiaris].
          Length = 246

 Score =  140 bits (354), Expect = 2e-33
 Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 1/213 (0%)
 Frame = +2

Query: 524  MWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 703
            M DLN++Q   +  HDAP++ + +   P  + ++TGSWD+T+K WD R+         PE
Sbjct: 1    MHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPE 58

Query: 704  RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 883
            + Y   V     +V TA R ++V+ L N     +R ES LK+Q RC+  F +KQ    G+
Sbjct: 59   KVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GY 114

Query: 884  ALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCT 1060
             L SIEGRVA+ Y++P P   K  + FKCHR    N    + IY VN I+FH +H T  T
Sbjct: 115  VLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFAT 171

Query: 1061 VGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             GSDG  + W    + +L    +    I+   F
Sbjct: 172  GGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 204


>ref|XP_855137.1| PREDICTED: similar to BUB3 budding uninhibited by benzimidazoles 3
            isoform a [Canis familiaris].
          Length = 292

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 59/199 (29%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
 Frame = +2

Query: 596  IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV----------- 742
            +++PN S +   SW    +  +  SS  ++ ++LP R   +    P              
Sbjct: 58   LRSPNLSALRPPSW-LFQRAAEEASSTCLIFIKLPGRSISSVKFSPNTSQFLLVSSWDIS 116

Query: 743  VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 922
            V   +  ++V+ L N  +  +  ES LK+Q RC+  F +KQ    G+ L SI+GRVA  Y
Sbjct: 117  VRLYDAAVLVWDLRNMGNVQQCRESRLKYQTRCIRAFPNKQ----GYVLSSIKGRVAFEY 172

Query: 923  INPPNPGKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDA 1102
            ++P    +    FKCHR  G +    + IY VN I+FH +H    T GSDG  + W    
Sbjct: 173  LDPSPEEQKKHAFKCHRLKGNSI---EQIYPVNAISFHNIHDMFATGGSDGSVNIWDPFN 229

Query: 1103 RTKLKTSEQLDQPISGCCF 1159
            + +L    Q    I+   F
Sbjct: 230  KKRLCQFYQYPTSIASLAF 248


>ref|XP_541857.2| PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis
           familiaris].
          Length = 406

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 62  DAVTCVNFSPS---GHLLASGSRDKTVRIWIPNVKGEST--VFRAHTATVRSVHFCSDGQ 116

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
            + TAS DKT K+W  +  + +  ++QH      I+W++   +S     +++ S DKT+K
Sbjct: 117 SLVTASDDKTVKVWSTHRQKFLFSLSQH------INWVRCARFSPDGRLIVSASDDKTVK 170

Query: 653 FWDTRS 670
            WD  S
Sbjct: 171 LWDKTS 176



 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G  L+  S    V+ W           +Q  H   V    +S DG  + +AS DKT K+W
Sbjct: 115 GQSLVTASDDKTVKVWSTHRQKFLFSLSQ--HINWVRCARFSPDGRLIVSASDDKTVKLW 172

Query: 530 DLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           D  S + +    +H   V  + +   P+ +C+   S D T+K WD R+   +   QL
Sbjct: 173 DKTSRECVHSYCEHGGFVTYVDF--HPSGTCIAAASMDNTVKVWDVRTHRLLQHYQL 227


>ref|XP_859995.1| PREDICTED: similar to WD repeat domain 51A isoform 2 [Canis
           familiaris].
          Length = 388

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 62  DAVTCVNFSPS---GHLLASGSRDKTVRIWIPNVKGEST--VFRAHTATVRSVHFCSDGQ 116

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
            + TAS DKT K+W  +  + +  ++QH      I+W++   +S     +++ S DKT+K
Sbjct: 117 SLVTASDDKTVKVWSTHRQKFLFSLSQH------INWVRCARFSPDGRLIVSASDDKTVK 170

Query: 653 FWDTRS 670
            WD  S
Sbjct: 171 LWDKTS 176


>ref|XP_862068.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like)
           isoform 3 [Canis familiaris].
          Length = 623

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 394 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 451

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I         CVM+G +DK ++FWD RS + +  ++L
Sbjct: 452 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMEL 503


>ref|XP_534608.2| PREDICTED: similar to Autophagy protein 16-like (APG16-like)
           isoform 1 [Canis familiaris].
          Length = 588

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 359 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I         CVM+G +DK ++FWD RS + +  ++L
Sbjct: 417 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMEL 468


>ref|XP_850664.1| PREDICTED: similar to Autophagy protein 16-like (APG16-like)
           isoform 2 [Canis familiaris].
          Length = 607

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 378 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I         CVM+G +DK ++FWD RS + +  ++L
Sbjct: 436 DLRSKVCIKTVFAGSSCNDI----VCTEQCVMSGHFDKKIRFWDIRSESIVREMEL 487


>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris].
          Length = 833

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D +  + FSP    GN L + S    VR W     G++     + HT PV  V +S DG 
Sbjct: 416 DVVTSVQFSPL---GNLLASASRDRTVRLWIPDKRGKS--SEFKAHTAPVRSVDFSADGQ 470

Query: 488 KVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLKF 655
            + TAS DK+ K+W++   + +      +  +  HW++   +S     +++ S DKT+K 
Sbjct: 471 FLATASEDKSIKVWNMYRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI 525

Query: 656 WDT 664
           WDT
Sbjct: 526 WDT 528


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,112,217
Number of extensions: 1255127
Number of successful extensions: 4513
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 4245
Number of HSP's successfully gapped: 44
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008039
         (1159 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098766.1| mRNA export factor [Sus scrofa].                  626   e-180
Alignment   gi|XP_001928080.1| PREDICTED: mitotic checkpoint protein BUB3 i...   175   5e-44
Alignment   gi|XP_003359438.1| PREDICTED: mitotic checkpoint protein BUB3 [...   175   5e-44
Alignment   gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A...    63   4e-10
Alignment   gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S...    62   8e-10
Alignment   gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/...    56   3e-08
Alignment   gi|NP_001177202.1| autophagy-related protein 16-1 isoform 2 [Su...    55   6e-08
Alignment   gi|NP_001177201.1| autophagy-related protein 16-1 isoform 1 [Su...    55   6e-08
Alignment   gi|NP_999497.1| guanine nucleotide-binding protein subunit beta...    55   1e-07
Alignment   gi|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-l...    54   2e-07

>ref|NP_001098766.1| mRNA export factor [Sus scrofa].
          Length = 368

 Score =  626 bits (1615), Expect = e-180
 Identities = 294/300 (98%), Positives = 295/300 (98%)
 Frame = +2

Query: 260  DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
            DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24   DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83

Query: 440  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
            MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84   MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 143

Query: 620  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
            VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203

Query: 800  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
            FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263

Query: 980  GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
            GTNTSAPQDIYAVNGIAFHPVHGT  TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264  GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323


>ref|XP_001928080.1| PREDICTED: mitotic checkpoint protein BUB3 isoform 2 [Sus scrofa].
          Length = 326

 Score =  175 bits (443), Expect = 5e-44
 Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
 Frame = +2

Query: 281  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
            + ++   P+D I  + FSP T    FL+  SW   VR ++V  +   +   +  HTG VL
Sbjct: 6    EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60

Query: 461  DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
            D C   D +  ++   D   KM DLN++Q   +  HDAP++ + +   P  + ++TGSWD
Sbjct: 61   D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117

Query: 641  KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
            +T+K WD R+         PE+ Y   V     +V TA R ++V+ L N     +R ES 
Sbjct: 118  QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177

Query: 821  LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
            LK+Q RC+  F +KQ    G+ L SIEGRVA+ Y++P P   K  + FKCHR    N   
Sbjct: 178  LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231

Query: 998  PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             + IY VN I+FH +H T  T GSDG  + W    + +L    +    I+   F
Sbjct: 232  -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284


>ref|XP_003359438.1| PREDICTED: mitotic checkpoint protein BUB3 [Sus scrofa].
          Length = 328

 Score =  175 bits (443), Expect = 5e-44
 Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
 Frame = +2

Query: 281  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
            + ++   P+D I  + FSP T    FL+  SW   VR ++V  +   +   +  HTG VL
Sbjct: 6    EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60

Query: 461  DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
            D C   D +  ++   D   KM DLN++Q   +  HDAP++ + +   P  + ++TGSWD
Sbjct: 61   D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117

Query: 641  KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
            +T+K WD R+         PE+ Y   V     +V TA R ++V+ L N     +R ES 
Sbjct: 118  QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177

Query: 821  LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
            LK+Q RC+  F +KQ    G+ L SIEGRVA+ Y++P P   K  + FKCHR    N   
Sbjct: 178  LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231

Query: 998  PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             + IY VN I+FH +H T  T GSDG  + W    + +L    +    I+   F
Sbjct: 232  -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284


>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
          Length = 344

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 62  DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNIKGEST--VFRAHTATVRSVHFCSDGQ 116

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
              TAS DKT K+W  +  + +  ++QH      I+W++   +S     +++ S DKT+K
Sbjct: 117 SFVTASDDKTIKVWSTHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170

Query: 653 FWDTRS 670
            WD  S
Sbjct: 171 LWDKTS 176


>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
          Length = 334

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +2

Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
           K ++      + + C +F+P +   N +++GS+   VR W+V+ +G+ + K    H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174

Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
             V ++ DGS + ++S D   ++WD  S Q ++  I   + PV  + +  +PN   ++  
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232

Query: 632 SWDKTLKFWD 661
           + D TLK WD
Sbjct: 233 TLDNTLKLWD 242



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = +2

Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
           ++  + FSP    G +L + S    ++ W   D      K    H   + DV WS D + 
Sbjct: 47  AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101

Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
           + +AS DKT K+WD++S + ++ +  H   V   ++   P  + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159

Query: 668 SSNPMMVL 691
           +   +  L
Sbjct: 160 TGKCLKTL 167


>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
           factor-associated factor 65 kDa subunit 5L [Sus scrofa].
          Length = 589

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
 Frame = +2

Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
           + C+ F P +   N+L  GS    VR W  Q       +    H GPVL + +S +G  +
Sbjct: 429 VDCVKFHPNS---NYLATGSTDKTVRLWSAQQGNSV--RLFTGHRGPVLSLAFSPNGKYL 483

Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
            +A  D+  K+WDL S     ++  H   + ++ +  +P+ S + + S D +++ WD R+
Sbjct: 484 ASAGEDQRLKLWDLASGTLFKELRGHTDNITSLTF--SPDSSLIASASMDNSVRVWDIRN 541

Query: 671 SN 676
           ++
Sbjct: 542 TH 543


>ref|NP_001177202.1| autophagy-related protein 16-1 isoform 2 [Sus scrofa].
          Length = 588

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K W
Sbjct: 359 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKHW 416

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I   +     CVM+G +DK ++FWD RS + +  ++L
Sbjct: 417 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESIVREMEL 468


>ref|NP_001177201.1| autophagy-related protein 16-1 isoform 1 [Sus scrofa].
          Length = 607

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G++L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K W
Sbjct: 378 GSYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKHW 435

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I   +     CVM+G +DK ++FWD RS + +  ++L
Sbjct: 436 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESIVREMEL 487


>ref|NP_999497.1| guanine nucleotide-binding protein subunit beta-2-like 1 [Sus
           scrofa].
          Length = 317

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G F ++GSW   +R W++     T  +    HT  VL V +S D  ++ + S DKT K+W
Sbjct: 75  GQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132

Query: 530 DLNS--NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 661
           +        +Q   H   V  + +    +   +++  WDK +K W+
Sbjct: 133 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178


>ref|XP_003358840.1| PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa].
          Length = 330

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           +++  + FSP    G +L + S    +  W   D      KA + H+  + DV WS D  
Sbjct: 42  EAVSSVKFSPN---GEWLASSSADKVIIIWGAYDG--KYEKALKGHSLEISDVAWSSDSG 96

Query: 488 KVFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 664
           ++ +AS DKT K+WD+   + ++ +  H   V   ++   P  + +++GS+D+++K W+ 
Sbjct: 97  RLVSASDDKTLKIWDVRVGKCLKTLKGHSNYVFCCNF--NPPSNLIISGSFDESVKIWEV 154

Query: 665 RSSNPMMVL 691
           ++   +  L
Sbjct: 155 KTGRCLKTL 163


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,032,644
Number of extensions: 780336
Number of successful extensions: 2762
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 2624
Number of HSP's successfully gapped: 33
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008039
         (1159 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_780321.1| mRNA export factor [Mus musculus].                   625   e-179
Alignment   gi|NP_033904.2| mitotic checkpoint protein BUB3 [Mus musculus].      175   7e-44
Alignment   gi|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].     64   3e-10
Alignment   gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].        62   1e-09
Alignment   gi|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].     60   3e-09
Alignment   gi|NP_001192321.1| autophagy-related protein 16-1 isoform 3 [Mu...    56   5e-08
Alignment   gi|NP_001192320.1| autophagy-related protein 16-1 isoform 1 [Mu...    56   5e-08
Alignment   gi|NP_084122.2| autophagy-related protein 16-1 isoform 2 [Mus m...    56   5e-08
Alignment   gi|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus mus...    56   6e-08
Alignment   gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated...    55   8e-08

>ref|NP_780321.1| mRNA export factor [Mus musculus].
          Length = 368

 Score =  625 bits (1612), Expect = e-179
 Identities = 293/300 (97%), Positives = 295/300 (98%)
 Frame = +2

Query: 260  DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
            DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24   DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83

Query: 440  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
            MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84   MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 143

Query: 620  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
            VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203

Query: 800  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
            FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263

Query: 980  GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
            GTNTSAPQDIYAVNGIAFHPVHGT  TVGSDGRFSFW +DARTKLKTSEQLDQPI+ CCF
Sbjct: 264  GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPIAACCF 323


>ref|NP_033904.2| mitotic checkpoint protein BUB3 [Mus musculus].
          Length = 326

 Score =  175 bits (443), Expect = 7e-44
 Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
 Frame = +2

Query: 281  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
            + ++   P+D I  + FSP T    FL+  SW   VR ++V  +   +   +  HTG VL
Sbjct: 6    EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60

Query: 461  DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
            D C   D +  ++   D   KM DLN++Q   +  HDAP++ + +   P  + ++TGSWD
Sbjct: 61   D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117

Query: 641  KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
            +T+K WD R+         PE+ Y   V     +V TA R ++V+ L N     +R ES 
Sbjct: 118  QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177

Query: 821  LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
            LK+Q RC+  F +KQ    G+ L SIEGRVA+ Y++P P   K  + FKCHR    N   
Sbjct: 178  LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231

Query: 998  PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             + IY VN I+FH +H T  T GSDG  + W    + +L    +    I+   F
Sbjct: 232  -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284


>ref|NP_081630.2| POC1 centriolar protein homolog A [Mus musculus].
          Length = 405

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 62  DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
            + TAS DKT K+W  +  + +  + QH      I+W++   +S     +++ S DKT+K
Sbjct: 117 SLVTASDDKTVKVWSTHRQRFLFSLTQH------INWVRCAKFSPDGRLIVSASDDKTVK 170

Query: 653 FWDTRS 670
            WD  S
Sbjct: 171 LWDKTS 176


>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
          Length = 334

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +2

Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
           K ++      + + C +F+P +   N +++GS+   VR W+V+ +G+ + K    H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174

Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
             V ++ DGS + ++S D   ++WD  S Q ++  I   + PV  + +  +PN   ++  
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232

Query: 632 SWDKTLKFWD 661
           + D TLK WD
Sbjct: 233 TLDNTLKLWD 242



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = +2

Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
           ++  + FSP    G +L + S    ++ W   D      K    H   + DV WS D + 
Sbjct: 47  AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101

Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
           + +AS DKT K+WD++S + ++ +  H   V   ++   P  + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159

Query: 668 SSNPMMVL 691
           +   +  L
Sbjct: 160 TGKCLKTL 167


>ref|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].
          Length = 476

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D +  L FSP    GN L + S    VR W +   G++     + HT PV  V +S DG 
Sbjct: 61  DVVTSLQFSPQ---GNLLASASRDRTVRLWVLDRKGKS--SEFKAHTAPVRSVDFSADGQ 115

Query: 488 KVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLKF 655
            + TAS DK+ K+W +   + +      +  +  HW++   +S     +++ S DKT+K 
Sbjct: 116 LLVTASEDKSIKVWSMFRQRFLY-----SLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKI 170

Query: 656 WDT 664
           WDT
Sbjct: 171 WDT 173


>ref|NP_001192321.1| autophagy-related protein 16-1 isoform 3 [Mus musculus].
          Length = 588

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G +L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 359 GAYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 416

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I   +     CVM+G +DK ++FWD RS + +  ++L
Sbjct: 417 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESVVREMEL 468


>ref|NP_001192320.1| autophagy-related protein 16-1 isoform 1 [Mus musculus].
          Length = 623

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G +L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 394 GAYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 451

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I   +     CVM+G +DK ++FWD RS + +  ++L
Sbjct: 452 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESVVREMEL 503


>ref|NP_084122.2| autophagy-related protein 16-1 isoform 2 [Mus musculus].
          Length = 607

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 35/116 (30%), Positives = 57/116 (49%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G +L+A S     R W V D    +      H+G VL   +  D +++ + S D+T K+W
Sbjct: 378 GAYLLAASNDFASRIWTVDD--YRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLW 435

Query: 530 DLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL 697
           DL S   I+     +    I   +     CVM+G +DK ++FWD RS + +  ++L
Sbjct: 436 DLRSKVCIKTVFAGSSCNDIVCTE----QCVMSGHFDKKIRFWDIRSESVVREMEL 487


>ref|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus musculus].
          Length = 658

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
 Frame = +2

Query: 350 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 529
           G F+ +GS   +++ W+++  G       + H+  V  + +S DG  + +A+ D T K+W
Sbjct: 117 GEFVASGSQDTNIKLWDIRRKGCVF--RYRGHSQAVRCLRFSPDGKWLASAADDHTVKLW 174

Query: 530 DLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 661
           DL + + + +   H  PV  + +   PN   + +GS D+T++FWD
Sbjct: 175 DLTAGKMMSEFPGHTGPVNVVEF--HPNEYLLASGSSDRTIRFWD 217


>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
           factor 65 kDa subunit 5L [Mus musculus].
          Length = 589

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
 Frame = +2

Query: 314 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 493
           + C+ F P +   N+L  GS    VR W  Q       +    H GPVL + +S +G  +
Sbjct: 429 VDCVKFHPNS---NYLATGSTDKTVRLWSAQQGNSV--RLFTGHRGPVLSLSFSPNGKYL 483

Query: 494 FTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 670
            +A  D+  K+WDL S     ++  H   + ++ +  +P+   + + S D +++ WD RS
Sbjct: 484 ASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAF--SPDSGLIASASMDNSVRVWDIRS 541

Query: 671 S 673
           +
Sbjct: 542 T 542


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,308,063
Number of extensions: 1048434
Number of successful extensions: 3564
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3368
Number of HSP's successfully gapped: 34
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008039
         (1159 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003601.1| mRNA export factor [Homo sapiens].                   624   e-179
Alignment   gi|NP_001015885.1| mRNA export factor [Homo sapiens].                624   e-179
Alignment   gi|NP_001007794.1| mitotic checkpoint protein BUB3 isoform b [H...   175   8e-44
Alignment   gi|NP_004716.1| mitotic checkpoint protein BUB3 isoform a [Homo...   175   8e-44
Alignment   gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien...    62   8e-10
Alignment   gi|NP_001155053.1| POC1 centriolar protein homolog A isoform 3 ...    62   8e-10
Alignment   gi|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 ...    62   8e-10
Alignment   gi|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Ho...    62   8e-10
Alignment   gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].        62   1e-09
Alignment   gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].        62   1e-09

>ref|NP_003601.1| mRNA export factor [Homo sapiens].
          Length = 368

 Score =  624 bits (1610), Expect = e-179
 Identities = 293/300 (97%), Positives = 295/300 (98%)
 Frame = +2

Query: 260  DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
            DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24   DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83

Query: 440  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
            MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL+SNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84   MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC 143

Query: 620  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
            VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203

Query: 800  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
            FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263

Query: 980  GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
            GTNTSAPQDIYAVNGIAFHPVHGT  TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264  GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323


>ref|NP_001015885.1| mRNA export factor [Homo sapiens].
          Length = 368

 Score =  624 bits (1610), Expect = e-179
 Identities = 293/300 (97%), Positives = 295/300 (98%)
 Frame = +2

Query: 260  DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 439
            DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ
Sbjct: 24   DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ 83

Query: 440  MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSC 619
            MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL+SNQAIQIAQHDAPVKTIHWIKAPNYSC
Sbjct: 84   MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSC 143

Query: 620  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 799
            VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE
Sbjct: 144  VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSE 203

Query: 800  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPGKDNFTFKCHRSN 979
            FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP KDNFTFKCHRSN
Sbjct: 204  FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263

Query: 980  GTNTSAPQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
            GTNTSAPQDIYAVNGIAFHPVHGT  TVGSDGRFSFW +DARTKLKTSEQLDQPIS CCF
Sbjct: 264  GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323


>ref|NP_001007794.1| mitotic checkpoint protein BUB3 isoform b [Homo sapiens].
          Length = 326

 Score =  175 bits (443), Expect = 8e-44
 Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
 Frame = +2

Query: 281  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
            + ++   P+D I  + FSP T    FL+  SW   VR ++V  +   +   +  HTG VL
Sbjct: 6    EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60

Query: 461  DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
            D C   D +  ++   D   KM DLN++Q   +  HDAP++ + +   P  + ++TGSWD
Sbjct: 61   D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117

Query: 641  KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
            +T+K WD R+         PE+ Y   V     +V TA R ++V+ L N     +R ES 
Sbjct: 118  QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177

Query: 821  LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
            LK+Q RC+  F +KQ    G+ L SIEGRVA+ Y++P P   K  + FKCHR    N   
Sbjct: 178  LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231

Query: 998  PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             + IY VN I+FH +H T  T GSDG  + W    + +L    +    I+   F
Sbjct: 232  -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284


>ref|NP_004716.1| mitotic checkpoint protein BUB3 isoform a [Homo sapiens].
          Length = 328

 Score =  175 bits (443), Expect = 8e-44
 Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 1/294 (0%)
 Frame = +2

Query: 281  DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL 460
            + ++   P+D I  + FSP T    FL+  SW   VR ++V  +   +   +  HTG VL
Sbjct: 6    EFKLNQPPEDGISSVKFSPNT--SQFLLVSSWDTSVRLYDVPANSMRL---KYQHTGAVL 60

Query: 461  DVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWD 640
            D C   D +  ++   D   KM DLN++Q   +  HDAP++ + +   P  + ++TGSWD
Sbjct: 61   D-CAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEY--CPEVNVMVTGSWD 117

Query: 641  KTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP 820
            +T+K WD R+         PE+ Y   V     +V TA R ++V+ L N     +R ES 
Sbjct: 118  QTVKLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESS 177

Query: 821  LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPGKDNFTFKCHRSNGTNTSA 997
            LK+Q RC+  F +KQ    G+ L SIEGRVA+ Y++P P   K  + FKCHR    N   
Sbjct: 178  LKYQTRCIRAFPNKQ----GYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNI-- 231

Query: 998  PQDIYAVNGIAFHPVHGTPCTVGSDGRFSFWGQDARTKLKTSEQLDQPISGCCF 1159
             + IY VN I+FH +H T  T GSDG  + W    + +L    +    I+   F
Sbjct: 232  -EQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAF 284


>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
          Length = 314

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
 Frame = +2

Query: 326 SFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 505
           +FSP    G  L+ GS    V  WE + SGQ + +    HTGPV    +S DG    +AS
Sbjct: 28  AFSPD---GQMLLTGSEDGCVYGWETR-SGQLLWRLGG-HTGPVKFCRFSPDGHLFASAS 82

Query: 506 CDKTAKMWDLNSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 682
           CD T ++WD+   + +++ + H   V+T+ +  +P+   + +G WDK +  WD +S   +
Sbjct: 83  CDCTVRLWDVARAKCLRVLKGHQRSVETVSF--SPDSRQLASGGWDKRVMLWDVQSGQML 140

Query: 683 MVL 691
            +L
Sbjct: 141 RLL 143


>ref|NP_001155053.1| POC1 centriolar protein homolog A isoform 3 [Homo sapiens].
          Length = 369

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 24  DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 78

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
              TAS DKT K+W  +  + +  ++QH      I+W++   +S     +++ S DKT+K
Sbjct: 79  SFVTASDDKTVKVWATHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 132

Query: 653 FWDTRS 670
            WD  S
Sbjct: 133 LWDKSS 138


>ref|NP_001155052.1| POC1 centriolar protein homolog A isoform 2 [Homo sapiens].
          Length = 359

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 62  DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
              TAS DKT K+W  +  + +  ++QH      I+W++   +S     +++ S DKT+K
Sbjct: 117 SFVTASDDKTVKVWATHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170

Query: 653 FWDTRS 670
            WD  S
Sbjct: 171 LWDKSS 176


>ref|NP_056241.3| POC1 centriolar protein homolog A isoform 1 [Homo sapiens].
          Length = 407

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +2

Query: 308 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 487
           D++ C++FSP    G+ L +GS    VR W     G++     + HT  V  V +  DG 
Sbjct: 62  DAVTCVNFSPS---GHLLASGSRDKTVRIWVPNVKGEST--VFRAHTATVRSVHFCSDGQ 116

Query: 488 KVFTASCDKTAKMWDLNSNQAI-QIAQHDAPVKTIHWIKAPNYS----CVMTGSWDKTLK 652
              TAS DKT K+W  +  + +  ++QH      I+W++   +S     +++ S DKT+K
Sbjct: 117 SFVTASDDKTVKVWATHRQKFLFSLSQH------INWVRCAKFSPDGRLIVSASDDKTVK 170

Query: 653 FWDTRS 670
            WD  S
Sbjct: 171 LWDKSS 176


>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
          Length = 334

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +2

Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
           K ++      + + C +F+P +   N +++GS+   VR W+V+ +G+ + K    H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174

Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
             V ++ DGS + ++S D   ++WD  S Q ++  I   + PV  + +  +PN   ++  
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232

Query: 632 SWDKTLKFWD 661
           + D TLK WD
Sbjct: 233 TLDNTLKLWD 242



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = +2

Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
           ++  + FSP    G +L + S    ++ W   D      K    H   + DV WS D + 
Sbjct: 47  AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101

Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
           + +AS DKT K+WD++S + ++ +  H   V   ++   P  + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159

Query: 668 SSNPMMVL 691
           +   +  L
Sbjct: 160 TGKCLKTL 167


>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
          Length = 334

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = +2

Query: 278 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 457
           K ++      + + C +F+P +   N +++GS+   VR W+V+ +G+ + K    H+ PV
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPV 174

Query: 458 LDVCWSDDGSKVFTASCDKTAKMWDLNSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTG 631
             V ++ DGS + ++S D   ++WD  S Q ++  I   + PV  + +  +PN   ++  
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAA 232

Query: 632 SWDKTLKFWD 661
           + D TLK WD
Sbjct: 233 TLDNTLKLWD 242



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
 Frame = +2

Query: 311 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 490
           ++  + FSP    G +L + S    ++ W   D      K    H   + DV WS D + 
Sbjct: 47  AVSSVKFSPN---GEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNL 101

Query: 491 VFTASCDKTAKMWDLNSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 667
           + +AS DKT K+WD++S + ++ +  H   V   ++   P  + +++GS+D++++ WD +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159

Query: 668 SSNPMMVL 691
           +   +  L
Sbjct: 160 TGKCLKTL 167


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,259,896
Number of extensions: 1238825
Number of successful extensions: 4230
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 3993
Number of HSP's successfully gapped: 44
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008039
         (1159 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr17                                                         357   9e-96

>Sscrofa_Chr17 
||          Length = 69701581

 Score =  357 bits (180), Expect = 9e-96
 Identities = 183/184 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        gcgcatgcgcagcggcccccacggtaaatagggcagtttcttaggccagcgtgagacctc 60
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 64916083 gcgcatgcgcagcggcccccacggtaaatagggcagttttttaggccagcgtgagacctc 64916142

                                                                            
Query: 61       gaggtcggaagataactgtcgctgccgccttgccttcgcctcgtccacgcccgagccggg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64916143 gaggtcggaagataactgtcgctgccgccttgccttcgcctcgtccacgcccgagccggg 64916202

                                                                            
Query: 121      tcacaggctcctgagctctttctgctccccgtcgtcggcttccctccgcggcgcgactct 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64916203 tcacaggctcctgagctctttctgctccccgtcgtcggcttccctccgcggcgcgactct 64916262

                    
Query: 181      cagg 184
                ||||
Sbjct: 64916263 cagg 64916266



 Score =  218 bits (110), Expect = 5e-54
 Identities = 139/146 (95%), Gaps = 2/146 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1015     ggtaaacgggatcgcattccatcctgttcacggcaccccttgc-accgtggggtctgatg 1073
                ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 64931126 ggtaaacgggatcgcattccatcctgttcacggca-cccttgcaaccgtggggtctgatg 64931184

                                                                            
Query: 1074     gtagattcagcttctggggacaagatgccagaacaaaactcaaaacttcggagcagttag 1133
                ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 64931185 gtagattcagcttctgggacaaagatgccagaacaaaactcaaaacttcggagcagttag 64931244

                                          
Query: 1134     accagccaatatcgggctgctgcttc 1159
                |||||||||||||||  |||||||||
Sbjct: 64931245 accagccaatatcggcttgctgcttc 64931270



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 279      aggatattgaagtaacatcctctcctgacgatagcattggttgtctatcttttagcccac 338
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64920031 aggatattgaagtaacatcctctcctgacgatagcattggttgtctatcttttagcccac 64920090

                                                                 
Query: 339      ccaccttgccggggaactttctcattgcaggatcgtgggctaacgatgt 387
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64920091 ccaccttgccggggaactttctcattgcaggatcgtgggctaacgatgt 64920139



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 724      gatataccctatggccgtggtggcaactgcagagaggggcctgattgtctatcagctgga 783
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64927571 gatataccctatggccgtggtggcaactgcagagaggggcctgattgtctatcagctgga 64927630

                                                                 
Query: 784      gaatcagccctctgaattcaggaggatagaatcgccgctgaaacaccag 832
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64927631 gaatcagccctctgaattcaggaggatagaatcgccgctgaaacaccag 64927679



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 831      agcatcggtgtgtggccatttttaaagacaaacagaacaagccgaccggtttcgccctgg 890
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64930306 agcatcggtgtgtggccatttttaaagacaaacagaacaagccgaccggtttcgccctgg 64930365

                                                                 
Query: 891      ggagcatcgaggggagagtcgccattcactacatcaaccctccgaaccc 939
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64930366 ggagcatcgaggggagagtcgccattcactacatcaaccctccgaaccc 64930414



 Score =  198 bits (100), Expect = 5e-48
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                            
Query: 182      agggccaaaatgagtctgtttggaacaacctcgggttttggaaccagtgggactagcatg 241
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64919386 agggccaaaatgagtctgtttggaacaacctcgggttttggaaccagtgggactagcatg 64919445

                                                        
Query: 242      tttggcagcacaaccacagataatcacaaccctatgaagg 281
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 64919446 tttggcagcacaaccacagataatcacaaccctatgaagg 64919485



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                            
Query: 386      gttcgctgttgggaagttcaggatagtggacagactattccaaaagctcagcagatgcac 445
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64921508 gttcgctgttgggaagttcaggatagtggacagactattccaaaagctcagcagatgcac 64921567

                                                  
Query: 446      actgggcccgtgcttgatgtctgctggagtgatg 479
                ||||||||||||||||||||||||||||||||||
Sbjct: 64921568 actgggcccgtgcttgatgtctgctggagtgatg 64921601



 Score =  176 bits (89), Expect = 2e-41
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                            
Query: 564      agcatgatgctcctgttaaaaccatacattggatcaaagcaccaaactacagctgtgtga 623
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64925851 agcatgatgctcctgttaaaaccatacattggatcaaagcaccaaactacagctgtgtga 64925910

                                             
Query: 624      tgacggggagctgggataagacgttgaag 652
                |||||||||||||||||||||||||||||
Sbjct: 64925911 tgacggggagctgggataagacgttgaag 64925939



 Score =  172 bits (87), Expect = 3e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                            
Query: 479      gatgggagcaaagtatttacagcatcatgtgataaaactgccaaaatgtgggacctcaac 538
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64924521 gatgggagcaaagtatttacagcatcatgtgataaaactgccaaaatgtgggacctcaac 64924580

                                           
Query: 539      agtaaccaggcgatacagattgcacag 565
                |||||||||||||||||||||||||||
Sbjct: 64924581 agtaaccaggcgatacagattgcacag 64924607



 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Plus

                                                                            
Query: 943      caaagataacttcaccttcaagtgtcatcgctctaacgggaccaacacgtccgctccgca 1002
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64930497 caaagataacttcaccttcaagtgtcatcgctctaacgggaccaacacgtccgctccgca 64930556

                                
Query: 1003     ggacatctacgcggta 1018
                ||||||||||||||||
Sbjct: 64930557 ggacatctacgcggta 64930572



 Score =  147 bits (74), Expect = 2e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                            
Query: 651      agttttgggatacacggtcatcaaatcctatgatggttttgcagctccctgaaaggtgtt 710
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64926044 agttttgggatacacggtcatcaaatcctatgatggttttgcagctccctgaaaggtgtt 64926103

                              
Query: 711      actgtgctgacgtg 724
                ||||||||||||||
Sbjct: 64926104 actgtgctgacgtg 64926117


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,353,004
Number of extensions: 135
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 1159
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1138
Effective length of database: 2,808,413,156
Effective search space: 3195974171528
Effective search space used: 3195974171528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)