Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008049
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029443.1| actin-related protein 2/3 complex subunit 3 ... 371 e-103
>ref|NP_001029443.1| actin-related protein 2/3 complex subunit 3 [Bos taurus].
Length = 178
Score = 371 bits (952), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +2
Query: 182 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 361
MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60
Query: 362 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 541
KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 542 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 715
ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,234,240
Number of extensions: 1131204
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4192
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008049
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861523.1| PREDICTED: similar to Actin-related protein 2/3... 374 e-104
Alignment gi|XP_534672.2| PREDICTED: similar to Actin-related protein 2/3... 371 e-103
>ref|XP_861523.1| PREDICTED: similar to Actin-related protein 2/3 complex subunit 3
(ARP2/3 complex 21 kDa subunit) (p21-ARC) isoform 2
[Canis familiaris].
Length = 211
Score = 374 bits (961), Expect = e-104
Identities = 187/219 (85%), Positives = 189/219 (86%)
Frame = +2
Query: 182 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 361
MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60
Query: 362 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 541
KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 542 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ*K 721
ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNK
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNK--------- 171
Query: 722 EPWADTVSTAVGSIFQQDVHSSLPSFRKVLYREEKRACL 838
+VHSSLP F KVLYR +KR CL
Sbjct: 172 -----------------NVHSSLPLFDKVLYRRKKRPCL 193
>ref|XP_534672.2| PREDICTED: similar to Actin-related protein 2/3 complex subunit 3
(ARP2/3 complex 21 kDa subunit) (p21-ARC) isoform 1
[Canis familiaris].
Length = 178
Score = 371 bits (952), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +2
Query: 182 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 361
MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60
Query: 362 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 541
KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 542 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 715
ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,929,217
Number of extensions: 1149892
Number of successful extensions: 4323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4316
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008049
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172064.1| actin-related protein 2/3 complex subunit 3 ... 371 e-103
>ref|NP_001172064.1| actin-related protein 2/3 complex subunit 3 [Sus scrofa].
Length = 178
Score = 371 bits (952), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +2
Query: 182 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 361
MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60
Query: 362 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 541
KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 542 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 715
ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,731,460
Number of extensions: 751206
Number of successful extensions: 2804
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2798
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008049
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062798.1| actin-related protein 2/3 complex subunit 3 [Mu... 365 e-101
>ref|NP_062798.1| actin-related protein 2/3 complex subunit 3 [Mus musculus].
Length = 178
Score = 365 bits (937), Expect = e-101
Identities = 174/178 (97%), Positives = 178/178 (100%)
Frame = +2
Query: 182 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 361
MPAYHSSLMDPDTKLIGNMALLP+RSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPLRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60
Query: 362 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 541
KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 542 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 715
A+KQEDE+MRAYLQQLRQETGLRLCEKVFDPQ+DKPSKWWTCFVKRQFMNKSLSGPGQ
Sbjct: 121 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMNKSLSGPGQ 178
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,686,483
Number of extensions: 945444
Number of successful extensions: 3431
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3410
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008049
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005710.1| actin-related protein 2/3 complex subunit 3 [Ho... 371 e-103
>ref|NP_005710.1| actin-related protein 2/3 complex subunit 3 [Homo sapiens].
Length = 178
Score = 371 bits (952), Expect = e-103
Identities = 178/178 (100%), Positives = 178/178 (100%)
Frame = +2
Query: 182 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 361
MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI 60
Query: 362 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 541
KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 542 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 715
ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,087,201
Number of extensions: 1125301
Number of successful extensions: 4207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4198
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008049
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 626 e-177
Sscrofa_Chr14 595 e-167
>Sscrofa_Chr01
|| Length = 315321322
Score = 626 bits (316), Expect = e-177
Identities = 522/586 (89%), Gaps = 16/586 (2%)
Strand = Plus / Minus
Query: 362 aagaatgaagctgataggaccttgatatatataactctctacatttctgagtgtctaaag 421
|||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 136455677 aagaatgaagctcataggaccttgatatatataactct--acatttctgattgtctaaaa 136455620
Query: 422 aaa---ctccaaaagtgcaattctaaaagccaaggcgagaaggaaatgtatacattgggg 478
||| ||||| ||||| |||||||||||| |||| ||||| || ||||||||||||||
Sbjct: 136455619 aaaaaactccacaagtgtaattctaaaagcaaaggtgagaaataattgtatacattgggg 136455560
Query: 479 atcactaattttcccattcctggagagcctggttttccacttaatgcaatttatgccaaa 538
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 136455559 accactaattttcccattcctggagagcttggttttccacttaatgaaatttatgccaaa 136455500
Query: 539 cctgcaaacaaacaggaagatgaagtgatgagggcctatttacaacagctgaggcaagag 598
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 136455499 cctgcaaacaaacaggaagatgaattgatgagggcctagttacaacagctgaggcaagag 136455440
Query: 599 actggactgagactttgtgaaaaagtttttgaccctcagaatgataaacccagcaagtgg 658
||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 136455439 actcgactgagactttgtgagaaagtttttgaccctcagaatgagaaacccagcaagtgg 136455380
Query: 659 tggacttgctttgtgaagagacaattcatgaacaagagtctttcaggacccggacagtaa 718
|||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 136455379 tggacttgctttatgaagagacaattcatgaacaag--tctttgaggacttagacagtaa 136455322
Query: 719 aaggagccttgggcagacactgtctccacagctgtgggcagcatttttcagcaagatgta 778
| || |||||||||| |||||||||| ||||| ||| ||||||| ||||||||||| |
Sbjct: 136455321 agggtgccttgggcaaacactgtctctacagccatggacagcattcttcagcaagatat- 136455263
Query: 779 cacagttctttgccttcatttcgtaaagttttatacagagaagagaagagagcatgtctt 838
|||||||||||||||| ||||| ||| ||||||| |||| |||||||||||||||||||
Sbjct: 136455262 cacagttctttgcctttatttcataatgttttattcagaagagagaagagagcatgtctt 136455203
Query: 839 ga-----agagctctttatcaagaatttggggtggggggctggagaagagtgggttgttg 893
| ||||||||||||||||||||| ||| ||||||||| ||||| ||| ||||||
Sbjct: 136455202 tacttgtagagctctttatcaagaatttagggcagggggctggggaagaatggtttgttg 136455143
Query: 894 ag---tgatttgaaattttctgcagtattaagctggtgcttaataa 936
| |||||||||||||||||| |||| |||||||||||||||||
Sbjct: 136455142 acaaatgatttgaaattttctgccgtatcaagctggtgcttaataa 136455097
Score = 272 bits (137), Expect = 4e-70
Identities = 232/263 (88%), Gaps = 8/263 (3%)
Strand = Plus / Minus
Query: 117 agaccggaagcacagccctccaacccgatcctcctcgtctgggttgaaaaccgggcgact 176
||||||||| |||||| |||||||||||| |||| || ||| ||||||||| ||||
Sbjct: 136456201 agaccggaatcacagcactccaacccgatgttccttgttgtggtcgaaaaccggatgact 136456142
Query: 177 ccaagatgccggcttatcactcttccctcatggaccccgacaccaaactcattggaaaca 236
||||||||| |||||||||||||||||||||| || ||| |||||||| ||||||
Sbjct: 136456141 ccaagatgc----ttatcactcttccctcatggactccaacatcaaactcactggaaatg 136456086
Query: 237 tggcattgctgcctatcaggagtcagttcaaaggacctgcccctagagaaacaaaagata 296
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 136456085 tggcactgctgcctatcaggagtcagttcaaaggacctgcccctacagagacaaaagata 136456026
Query: 297 cagatattgtggatgaagctatctattacttcaaggccaatgtcttcttcaaaaactatg 356
|||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct: 136456025 cagatattgtggatgaag----ctattacttcaaggccaaggtcttcttcaaaaactctg 136455970
Query: 357 aaattaagaatgaagctgatagg 379
||||||||||||||||| |||||
Sbjct: 136455969 aaattaagaatgaagctcatagg 136455947
>Sscrofa_Chr14
|| Length = 153851969
Score = 595 bits (300), Expect = e-167
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 654 agtggtggacttgctttgtgaagagacaattcatgaacaagagtctttcaggacccggac 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33745141 agtggtggacttgctttgtgaagagacaattcatgaacaagagtctttcaggacccggac 33745200
Query: 714 agtaaaaggagccttgggcagacactgtctccacagctgtgggcagcatttttcagcaag 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33745201 agtaaaaggagccttgggcagacactgtctccacagctgtgggcagcatttttcagcaag 33745260
Query: 774 atgtacacagttctttgccttcatttcgtaaagttttatacagagaagagaagagagcat 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33745261 atgtacacagttctttgccttcatttcgtaaagttttatacagagaagagaagagagcat 33745320
Query: 834 gtcttgaagagctctttatcaagaatttggggtggggggctggagaagagtgggttgttg 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33745321 gtcttgaagagctctttatcaagaatttggggtggggggctggagaagagtgggttgttg 33745380
Query: 894 agtgatttgaaattttctgcagtattaagctggtgcttaataataaagaaatttctaaca 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33745381 agtgatttgaaattttctgcagtattaagctggtgcttaataataaagaaatttctaaca 33745440
Score = 345 bits (174), Expect = 3e-92
Identities = 177/178 (99%)
Strand = Plus / Plus
Query: 11 tccgcgcagtcggagcagcttgccgcagtcggtaaggccggaagcgcggtctcctgctct 70
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33733000 tccgcgcagtcggagcaccttgccgcagtcggtaaggccggaagcgcggtctcctgctct 33733059
Query: 71 ggccctccccttccggctcacttccgactatcccgcccgggccaccagaccggaagcaca 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33733060 ggccctccccttccggctcacttccgactatcccgcccgggccaccagaccggaagcaca 33733119
Query: 131 gccctccaacccgatcctcctcgtctgggttgaaaaccgggcgactccaagatgccgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33733120 gccctccaacccgatcctcctcgtctgggttgaaaaccgggcgactccaagatgccgg 33733177
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 432 agtgcaattctaaaagccaaggcgagaaggaaatgtatacattggggatcactaattttc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33743965 agtgcaattctaaaagccaaggcgagaaggaaatgtatacattggggatcactaattttc 33744024
Query: 492 ccattcctggagagcctggttttccacttaatgcaatttatgccaaacctgcaaacaaac 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33744025 ccattcctggagagcctggttttccacttaatgcaatttatgccaaacctgcaaacaaac 33744084
Query: 552 aggaagatg 560
|||||||||
Sbjct: 33744085 aggaagatg 33744093
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 187 ggcttatcactcttccctcatggaccccgacaccaaactcattggaaacatggcattgct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33736370 ggcttatcactcttccctcatggaccccgacaccaaactcattggaaacatggcattgct 33736429
Query: 247 gcctatcaggagtcagttcaaaggacctgcccctagagaaa 287
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 33736430 gcctatcaggagtcagttcaaaggacctgcccctagagaaa 33736470
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 560 gaagtgatgagggcctatttacaacagctgaggcaagagactggactgagactttgtgaa 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33744591 gaagtgatgagggcctatttacaacagctgaggcaagagactggactgagactttgtgaa 33744650
Query: 620 aaagtttttgaccctcagaatgataaacccagcaag 655
||||||||||||||||||||||||||||||||||||
Sbjct: 33744651 aaagtttttgaccctcagaatgataaacccagcaag 33744686
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 288 caaaagatacagatattgtggatgaagctatctattacttcaaggccaatgtcttcttca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33739975 caaaagatacagatattgtggatgaagctatctattacttcaaggccaatgtcttcttca 33740034
Query: 348 aaaactatgaaattaag 364
|||||||||||||||||
Sbjct: 33740035 aaaactatgaaattaag 33740051
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 363 agaatgaagctgataggaccttgatatatataactctctacatttctgagtgtctaaaga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33742384 agaatgaagctgataggaccttgatatatataactctctacatttctgagtgtctaaaga 33742443
Query: 423 aactccaaaag 433
|||||||||||
Sbjct: 33742444 aactccaaaag 33742454
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,832,708
Number of extensions: 301
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 9
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)