Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008053
(1083 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014903.1| protein O-glucosyltransferase 1 precursor [B... 657 0.0
Alignment gi|NP_001069153.1| KDEL motif-containing protein 1 [Bos taurus]. 131 9e-31
Alignment gi|XP_002693013.1| PREDICTED: KDEL (Lys-Asp-Glu-Leu) containing... 122 7e-28
Alignment gi|XP_591650.2| PREDICTED: KDEL (Lys-Asp-Glu-Leu) containing 1-... 122 7e-28
>ref|NP_001014903.1| protein O-glucosyltransferase 1 precursor [Bos taurus].
Length = 392
Score = 657 bits (1696), Expect = 0.0
Identities = 305/318 (95%), Positives = 314/318 (98%)
Frame = +2
Query: 128 PVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGVIEEDLTPFRGGISRKMMAE 307
PVPGR+KESGSKWKV IDQINRALENYEPCSS NCSCYHGVIEEDLTPFRGGISRKMMAE
Sbjct: 20 PVPGREKESGSKWKVFIDQINRALENYEPCSSPNCSCYHGVIEEDLTPFRGGISRKMMAE 79
Query: 308 VVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVMGRLPDMEMVINVRDYPQVPK 487
VVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEV+GRLPDMEMVINVRDYPQVPK
Sbjct: 80 VVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVIGRLPDMEMVINVRDYPQVPK 139
Query: 488 WMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQWP 667
WMEPAIP+FSFSKT EYHDIMYPAWTFWEGGPAVWPIYP GLGRWDLFREDL++SAAQWP
Sbjct: 140 WMEPAIPIFSFSKTLEYHDIMYPAWTFWEGGPAVWPIYPMGLGRWDLFREDLVRSAAQWP 199
Query: 668 WEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHL 847
W+KKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSM+DTLGKPAAKDVHL
Sbjct: 200 WKKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHL 259
Query: 848 VDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLS 1027
VDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVG+EWLEFFYPQLKPWVHYIPVKTDLS
Sbjct: 260 VDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLKPWVHYIPVKTDLS 319
Query: 1028 NVQELLQFVKANDDIAQE 1081
NVQELLQFVKANDD+AQE
Sbjct: 320 NVQELLQFVKANDDVAQE 337
>ref|NP_001069153.1| KDEL motif-containing protein 1 [Bos taurus].
Length = 502
Score = 131 bits (330), Expect = 9e-31
Identities = 92/294 (31%), Positives = 152/294 (51%), Gaps = 9/294 (3%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVVRR----KLGTHYQIIKNRLYRESDCMFPSRC 394
NC I DL F K+ E+ +R + HY + N++Y ++
Sbjct: 152 NCPETFAQIHRDLVHFPTVDPEKIATEIPKRFGQRQSLCHYSLKDNKVYIKTHGEHVGFR 211
Query: 395 SGVEHFILEVMGR--LPDMEMVINVRDYPQVPKWMEPAI-PVFSFSKTSEYHDIMYPAWT 565
++ +L + + +PD+E +N+ D+P K P I P+FS+ +++ DI+ P +
Sbjct: 212 IFMDAILLSLTRKVKMPDVEFFVNLGDWPLEKKKSSPHIHPIFSWCGSTDSRDIVMPTYD 271
Query: 566 FWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLIL 739
+ + T +GR L D++ A PWE KNSTA +RG + ER L+
Sbjct: 272 LTDS------VLET-MGRVSL---DMMSVQANTGPPWESKNSTAVWRGRDSRRERLELVK 321
Query: 740 LSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHL 919
LSRK+P+L+DA +T +K + G P K + D K+KY N G A++R +L
Sbjct: 322 LSRKHPELIDAAFTNFFFFKHDESLYG-PIVKHISFFDFFKHKYQINVDGTVAAYRLPYL 380
Query: 920 FLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+ S+V + + E FY +L+PW HYIPVK++LS++ E LQ+ K +D+ A++
Sbjct: 381 LVGDSVVLKQDSIYYEHFYNELQPWKHYIPVKSNLSDLLEKLQWAKDHDEEAKK 434
>ref|XP_002693013.1| PREDICTED: KDEL (Lys-Asp-Glu-Leu) containing 2 [Bos taurus].
Length = 508
Score = 122 bits (305), Expect = 7e-28
Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 12/289 (4%)
Frame = +2
Query: 251 IEEDLTPFRGGISRKMMAEVVRR---KLGT--HYQIIKNRLYRESDCMFPSRCSGVEHFI 415
IE+D F ++M+ EV +R + G HY I+ N +YR S + + +
Sbjct: 164 IEKDFASFPSINLQQMLIEVPKRFGDERGAIVHYTILNNNIYRRSLGKYTDFKMFSDEIL 223
Query: 416 LEVMGR--LPDMEMVINVRDYPQVPKWMEPA---IPVFSFSKTSEYHDIMYPAWTFWEGG 580
L + + LPD+E +N+ D+P + + +P+ S+ + + D++ P +
Sbjct: 224 LSLARKVLLPDLEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSQDVILPTYD----- 278
Query: 581 PAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLILLSRKN 754
I + L DLL W K A+FRG + ER L+ LS++N
Sbjct: 279 -----ITHSTLEALRGVTNDLLSIQGNTGPSWINKTEKAFFRGRDSREERLQLVQLSKEN 333
Query: 755 PKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGS 934
P+L+DA T ++ + LGK AK + D KYKY N G A++R+ +L L S
Sbjct: 334 PQLLDAGITGYFFFQEKEKELGK--AKLIGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDS 391
Query: 935 LVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
LV + + E FY LKPW HYIP+K +LS++ E +++ K ND+ A++
Sbjct: 392 LVLKQDSPYYEHFYMALKPWKHYIPIKRNLSDLLEKVEWAKENDEEAKK 440
>ref|XP_591650.2| PREDICTED: KDEL (Lys-Asp-Glu-Leu) containing 1-like [Bos taurus].
Length = 460
Score = 122 bits (305), Expect = 7e-28
Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 12/289 (4%)
Frame = +2
Query: 251 IEEDLTPFRGGISRKMMAEVVRR---KLGT--HYQIIKNRLYRESDCMFPSRCSGVEHFI 415
IE+D F ++M+ EV +R + G HY I+ N +YR S + + +
Sbjct: 116 IEKDFASFPSINLQQMLIEVPKRFGDERGAIVHYTILNNNIYRRSLGKYTDFKMFSDEIL 175
Query: 416 LEVMGR--LPDMEMVINVRDYPQVPKWMEPA---IPVFSFSKTSEYHDIMYPAWTFWEGG 580
L + + LPD+E +N+ D+P + + +P+ S+ + + D++ P +
Sbjct: 176 LSLARKVLLPDLEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSQDVILPTYD----- 230
Query: 581 PAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLILLSRKN 754
I + L DLL W K A+FRG + ER L+ LS++N
Sbjct: 231 -----ITHSTLEALRGVTNDLLSIQGNTGPSWINKTEKAFFRGRDSREERLQLVQLSKEN 285
Query: 755 PKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGS 934
P+L+DA T ++ + LGK AK + D KYKY N G A++R+ +L L S
Sbjct: 286 PQLLDAGITGYFFFQEKEKELGK--AKLIGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDS 343
Query: 935 LVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
LV + + E FY LKPW HYIP+K +LS++ E +++ K ND+ A++
Sbjct: 344 LVLKQDSPYYEHFYMALKPWKHYIPIKRNLSDLLEKVEWAKENDEEAKK 392
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,646,847
Number of extensions: 1037231
Number of successful extensions: 2819
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2811
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008053
(1083 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545115.2| PREDICTED: similar to x 010 protein [Canis fami... 491 e-139
Alignment gi|XP_534180.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) co... 127 2e-29
Alignment gi|XP_546537.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) co... 122 8e-28
>ref|XP_545115.2| PREDICTED: similar to x 010 protein [Canis familiaris].
Length = 296
Score = 491 bits (1264), Expect = e-139
Identities = 233/261 (89%), Positives = 240/261 (91%)
Frame = +2
Query: 299 MAEVVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVMGRLPDMEMVINVRDYPQ 478
MAEVVRRKLGTHYQIIKNRLYRE+DCMFPSRCSGVEHFILEV+GRLPDMEMVINVRDYPQ
Sbjct: 1 MAEVVRRKLGTHYQIIKNRLYRENDCMFPSRCSGVEHFILEVIGRLPDMEMVINVRDYPQ 60
Query: 479 VPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAA 658
+PKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDL+
Sbjct: 61 IPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLV---- 116
Query: 659 QWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKD 838
RTSPERDPLILLSRKNPKLVDAEYTKNQAWKSM+DTLGKPAAKD
Sbjct: 117 ----------------RTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKD 160
Query: 839 VHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKT 1018
VHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVG+EWLEFFYPQLKPWVHYIPVKT
Sbjct: 161 VHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLKPWVHYIPVKT 220
Query: 1019 DLSNVQELLQFVKANDDIAQE 1081
DLSNVQELL FVKANDD+AQE
Sbjct: 221 DLSNVQELLHFVKANDDVAQE 241
>ref|XP_534180.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) containing 1 [Canis
familiaris].
Length = 502
Score = 127 bits (318), Expect = 2e-29
Identities = 91/294 (30%), Positives = 152/294 (51%), Gaps = 9/294 (3%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVVRR----KLGTHYQIIKNRLYRESDCMFPSRC 394
NC I+ DL F K+ AE+ +R + HY + N++Y ++
Sbjct: 152 NCPENITQIQRDLAHFPIVDPEKIAAEIPKRFGQRQSLCHYTLKDNKVYIKTHGEHVGFR 211
Query: 395 SGVEHFILEVMGR--LPDMEMVINVRDYPQVPKWMEPAI-PVFSFSKTSEYHDIMYPAWT 565
++ +L + + +PD+E +N+ D+P K I P+FS+ +++ DI+ P +
Sbjct: 212 IFMDAILLSLTRKVKMPDVEFFVNLGDWPLEKKKSNSQIHPIFSWCGSTDSKDIVMPTYD 271
Query: 566 FWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLIL 739
+ + T +GR L D++ A PWE KNSTA +RG + ER L+
Sbjct: 272 LTDS------VLET-MGRVSL---DMMSVQANTGPPWESKNSTAVWRGRDSRKERLELVK 321
Query: 740 LSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHL 919
LSRK+P+L+DA +T +K + G P K + D K+KY N G A++R +L
Sbjct: 322 LSRKHPELIDAAFTNFFFFKHDESLYG-PIVKHISFFDFFKHKYQINIDGTVAAYRLPYL 380
Query: 920 FLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+ S+V + + E FY +L+PW HYIPVK++LS++ E L++ K +D A++
Sbjct: 381 LVGDSVVLKQDSIYYEHFYNELQPWTHYIPVKSNLSDLLEKLKWAKDHDKEAKK 434
>ref|XP_546537.2| PREDICTED: similar to KDEL (Lys-Asp-Glu-Leu) containing 2 [Canis
familiaris].
Length = 508
Score = 122 bits (305), Expect = 8e-28
Identities = 88/298 (29%), Positives = 144/298 (48%), Gaps = 13/298 (4%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVVRRKLG------THYQIIKNRLYRESDCMFPS 388
+C I +D F I+ + M + V ++ G HY I+ N +YR S +
Sbjct: 156 SCPTKEPQIAKDFASFPS-INLQQMLDEVPKRFGDERGAIVHYTILNNHIYRRSLGKYTD 214
Query: 389 RCSGVEHFILEVMGR--LPDMEMVINVRDYPQVPKWMEPA---IPVFSFSKTSEYHDIMY 553
+ +L + + LPD+E IN+ D+P + + +P+ S+ + + DI+
Sbjct: 215 FKMFSDEILLSLARKVLLPDIEFYINLGDWPLEHRKVNETPGPLPIISWCGSLDSRDIIL 274
Query: 554 PAWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERD 727
P + I + L DLL W K A+FRG + ER
Sbjct: 275 PTYD----------ITHSTLEAMRGVTNDLLSIQGNTGPSWINKTEKAFFRGRDSREERL 324
Query: 728 PLILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFR 907
L+ LS++NP+L+DA T ++ + LGK AK + D KYKY N G A++R
Sbjct: 325 QLVQLSKENPELLDAGITGYFFFQEKEKELGK--AKLIGFFDFFKYKYQVNVDGTVAAYR 382
Query: 908 FKHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+ +L L SLV +++ E FY L+PW HY+P+K +LS++ E +++ K ND+ AQ+
Sbjct: 383 YPYLMLGNSLVLKQDSKYYEHFYMALQPWKHYVPIKRNLSDLLEKIKWAKENDEEAQK 440
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,418,987
Number of extensions: 1066951
Number of successful extensions: 2852
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2846
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008053
(1083 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132703.1| PREDICTED: protein O-glucosyltransferase 1-l... 193 1e-49
Alignment gi|XP_003361324.1| PREDICTED: KDEL motif-containing protein 1 [... 123 2e-28
Alignment gi|XP_003131130.2| PREDICTED: KDEL motif-containing protein 1-l... 121 6e-28
Alignment gi|XP_003129882.1| PREDICTED: KDEL motif-containing protein 2 [... 119 4e-27
>ref|XP_003132703.1| PREDICTED: protein O-glucosyltransferase 1-like [Sus scrofa].
Length = 107
Score = 193 bits (491), Expect = 1e-49
Identities = 93/107 (86%), Positives = 93/107 (86%)
Frame = +2
Query: 71 MERWAXXXXXXXXXXXXXXPVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGV 250
MERWA PVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGV
Sbjct: 1 MERWALSHLRLWLLLLLLLPVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGV 60
Query: 251 IEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSR 391
IEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSR
Sbjct: 61 IEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSR 107
>ref|XP_003361324.1| PREDICTED: KDEL motif-containing protein 1 [Sus scrofa].
Length = 493
Score = 123 bits (308), Expect = 2e-28
Identities = 87/288 (30%), Positives = 148/288 (51%), Gaps = 11/288 (3%)
Frame = +2
Query: 251 IEEDLTPFRGGISRKMMAEVVRRK--------LGTHYQIIKNRLYRESDCMFPSRCSGVE 406
I+ DL F K+ E+ +R + TH + + R++ ++ + +R
Sbjct: 160 IQRDLAQFPSVDPEKIATEIPKRXXXXXXXVYIKTHGEHVGFRIFMDAILLSLTR----- 214
Query: 407 HFILEVMGRLPDMEMVINVRDYPQVPKWMEPAI-PVFSFSKTSEYHDIMYPAWTFWEGGP 583
++PD+E +N+ D+P K I P+FS+ +++ DI+ P + +
Sbjct: 215 ------KVKMPDVEFFVNLGDWPLEKKKSGSHIHPIFSWCGSTDSKDIVMPTYDLTDS-- 266
Query: 584 AVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLILLSRKNP 757
+ T +GR L D+L A PWE KNSTA +RG + ER L+ LSRK+P
Sbjct: 267 ----VLET-MGRVSL---DMLSVQANTGPPWESKNSTAVWRGRDSRKERLELVKLSRKHP 318
Query: 758 KLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSL 937
+L+DA +T +K + G P K + D K+KY N G A++R +L + S+
Sbjct: 319 ELIDAAFTNFFFFKHDESLYG-PIVKHISFFDFFKHKYQINVDGTVAAYRLPYLLVGDSV 377
Query: 938 VFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
V + + E FY +L+PW HYIPV+++LS++ E L++ K +D+ A++
Sbjct: 378 VLKQDSIYYEHFYNELQPWKHYIPVRSNLSDLLEKLKWAKDHDEEAKK 425
>ref|XP_003131130.2| PREDICTED: KDEL motif-containing protein 1-like [Sus scrofa].
Length = 276
Score = 121 bits (304), Expect = 6e-28
Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 3/219 (1%)
Frame = +2
Query: 434 LPDMEMVINVRDYPQVPKWMEPAI-PVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTG 610
+PD+E +N+ D+P K I P+FS+ +++ DI+ P + + + T
Sbjct: 1 MPDVEFFVNLGDWPLEKKKSGSHIHPIFSWCGSTDSKDIVMPTYDLTDS------VLET- 53
Query: 611 LGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTK 784
+GR L D+L A PWE KNSTA +RG + ER L+ LSRK+P+L+DA +T
Sbjct: 54 MGRVSL---DMLSVQANTGPPWESKNSTAVWRGRDSRKERLELVKLSRKHPELIDAAFTN 110
Query: 785 NQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWL 964
+K + G P K + D K+KY N G A++R +L + S+V + +
Sbjct: 111 FFFFKHDESLYG-PIVKHISFFDFFKHKYQINVDGTVAAYRLPYLLVGDSVVLKQDSIYY 169
Query: 965 EFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
E FY +L+PW HYIPV+++LS++ E L++ K +D+ A++
Sbjct: 170 EHFYNELQPWKHYIPVRSNLSDLLEKLKWAKDHDEEAKK 208
>ref|XP_003129882.1| PREDICTED: KDEL motif-containing protein 2 [Sus scrofa].
Length = 508
Score = 119 bits (297), Expect = 4e-27
Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 12/297 (4%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVVRR---KLGT--HYQIIKNRLYRESDCMFPSR 391
+C I +D F ++M+ E+ RR + G HY I+ N +YR S +
Sbjct: 156 SCPTKEPQIAKDFASFPSINLQQMLNEIPRRFGEERGAIVHYTILNNHIYRRSLGKYTDF 215
Query: 392 CSGVEHFILEVMGR--LPDMEMVINVRDYPQVPKWMEPA---IPVFSFSKTSEYHDIMYP 556
+ +L + + LPD+E +N+ D+P + + +P+ S+ + + D++ P
Sbjct: 216 KMFSDEILLSLARKVLLPDVEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSRDVILP 275
Query: 557 AWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDP 730
+ I + L DLL W K A+FRG + ER
Sbjct: 276 TYD----------ITHSTLEAMRGVTNDLLSIQGHTGPSWINKTEKAFFRGRDSREERLQ 325
Query: 731 LILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRF 910
L+ LS++NP+L+DA T ++ + LGK AK + D KYKY N G A++R+
Sbjct: 326 LVQLSKENPQLLDAGITGYFFFQEKEKELGK--AKLIGFFDFFKYKYQVNVDGTVAAYRY 383
Query: 911 KHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+L L SLV + + E FY LKPW HY+P+K +LS++ E +++ K +D+ A++
Sbjct: 384 PYLMLGDSLVLKQDSPYYEHFYMALKPWKHYVPIKRNLSDLLEKIEWAKEHDEEAKK 440
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,136,615
Number of extensions: 662321
Number of successful extensions: 1883
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1876
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008053
(1083 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_759012.1| protein O-glucosyltransferase 1 precursor [Mus ... 654 0.0
Alignment gi|NP_076134.1| KDEL motif-containing protein 1 precursor [Mus ... 132 5e-31
Alignment gi|NP_997610.1| KDEL (Lys-Asp-Glu-Leu) containing 2 protein [Mu... 123 3e-28
>ref|NP_759012.1| protein O-glucosyltransferase 1 precursor [Mus musculus].
Length = 392
Score = 654 bits (1686), Expect = 0.0
Identities = 306/337 (90%), Positives = 317/337 (94%)
Frame = +2
Query: 71 MERWAXXXXXXXXXXXXXXPVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGV 250
MER A PV GRQK+SGSKWKV +DQINRALENYEPCSSQNCSCYHGV
Sbjct: 1 MERRAGSRLRAWMLLLLLCPVQGRQKDSGSKWKVFLDQINRALENYEPCSSQNCSCYHGV 60
Query: 251 IEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVMG 430
IEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRL+RE DCMFPSRCSGVEHFILEV+
Sbjct: 61 IEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLFREDDCMFPSRCSGVEHFILEVIH 120
Query: 431 RLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTG 610
RLPDMEMVINVRDYPQVPKWMEP IPVFSFSKTSEYHDIMYPAWTFWEGGPAVWP+YPTG
Sbjct: 121 RLPDMEMVINVRDYPQVPKWMEPTIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPLYPTG 180
Query: 611 LGRWDLFREDLLKSAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQ 790
LGRWDLFREDLL+SAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQ
Sbjct: 181 LGRWDLFREDLLRSAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQ 240
Query: 791 AWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWLEF 970
AWKSM+DTLGKPAAKDVHL+DHCKY+YLFNFRGVAASFRFKHLFLCGSLVFHVG+EW+EF
Sbjct: 241 AWKSMKDTLGKPAAKDVHLIDHCKYRYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWVEF 300
Query: 971 FYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
FYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE
Sbjct: 301 FYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 337
>ref|NP_076134.1| KDEL motif-containing protein 1 precursor [Mus musculus].
Length = 502
Score = 132 bits (332), Expect = 5e-31
Identities = 94/294 (31%), Positives = 154/294 (52%), Gaps = 9/294 (3%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVVRR----KLGTHYQIIKNRLYRESDCMFPSRC 394
NCS I++DL F K+ AE+ +R + HY + N++Y ++
Sbjct: 152 NCSETISQIQKDLAHFPTVDPEKIAAEIPKRFGQRQSLCHYTLKDNKVYIKTHGEHVGFR 211
Query: 395 SGVEHFILEVMG--RLPDMEMVINVRDYPQVPKWMEPAI-PVFSFSKTSEYHDIMYPAWT 565
++ +L + R+PD+E +N+ D+P K I P+FS+ ++E DI+ P +
Sbjct: 212 IFMDAILLSLTRKVRMPDVEFFVNLGDWPLEKKKSNSNIQPIFSWCGSTESRDIVMPTYD 271
Query: 566 FWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLIL 739
+ + T +GR L D++ A PWE KNSTA +RG + ER L+
Sbjct: 272 LTDS------VLET-MGRVSL---DMMSVQANTGPPWESKNSTAVWRGRDSRKERLELVK 321
Query: 740 LSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHL 919
LSRK+P+L+DA +T +K + G P K + D K+KY N G A++R +L
Sbjct: 322 LSRKHPELIDAAFTNFFFFKHDESLYG-PIVKHISFFDFFKHKYQINIDGTVAAYRLPYL 380
Query: 920 FLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+ S+V + + E FY +L+PW HYIPVK++LS++ E L++ K +D A++
Sbjct: 381 LVGDSVVLKQDSIYYEHFYNELQPWKHYIPVKSNLSDLLEKLKWAKEHDAEAKK 434
>ref|NP_997610.1| KDEL (Lys-Asp-Glu-Leu) containing 2 protein [Mus musculus].
Length = 503
Score = 123 bits (308), Expect = 3e-28
Identities = 89/297 (29%), Positives = 142/297 (47%), Gaps = 12/297 (4%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVV-----RRKLGTHYQIIKNRLYRESDCMFPSR 391
+C IE+D F ++M+ EV R HY I+ N +YR S +
Sbjct: 151 SCPASEPQIEQDFVSFPSINLQQMLKEVPTRFGDERGAVVHYTILNNHIYRRSLGKYTDF 210
Query: 392 CSGVEHFILEVMGR--LPDMEMVINVRDYPQVPKWMEPA---IPVFSFSKTSEYHDIMYP 556
+ +L + + LPD+E IN+ D+P + + IP+ S+ + + DI+ P
Sbjct: 211 KMFSDEILLSLARKVTLPDLEFYINLGDWPLEHRKVNDTPGPIPIISWCGSLDSRDIILP 270
Query: 557 AWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDP 730
+ + + L DLL W K A+FRG + ER
Sbjct: 271 TYD----------VTHSTLEAMRGVTNDLLSVQGNTGPSWINKTEKAFFRGRDSREERLQ 320
Query: 731 LILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRF 910
L+LLS++NP+L+DA T ++ + LGK AK + D KYKY N G A++R+
Sbjct: 321 LVLLSKENPQLLDAGITGYFFFQEKEKELGK--AKLMGFFDFFKYKYQVNVDGTVAAYRY 378
Query: 911 KHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+L L SLV + + E FY LKPW HY+P+K +L ++ E +++ K ND+ A++
Sbjct: 379 PYLMLGDSLVLKQESPYYEHFYVALKPWKHYVPIKRNLGDLLEKVKWAKENDEEAKK 435
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,577,084
Number of extensions: 899276
Number of successful extensions: 2576
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2568
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008053
(1083 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689518.1| protein O-glucosyltransferase 1 precursor [Homo... 657 0.0
Alignment gi|NP_076994.2| KDEL motif-containing protein 1 precursor [Homo... 129 6e-30
Alignment gi|NP_714916.3| KDEL motif-containing protein 2 precursor [Homo... 117 2e-26
>ref|NP_689518.1| protein O-glucosyltransferase 1 precursor [Homo sapiens].
Length = 392
Score = 657 bits (1695), Expect = 0.0
Identities = 308/337 (91%), Positives = 317/337 (94%)
Frame = +2
Query: 71 MERWAXXXXXXXXXXXXXXPVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGV 250
ME WA GRQKESGSKWKV IDQINR+LENYEPCSSQNCSCYHGV
Sbjct: 1 MEWWASSPLRLWLLLFLLPSAQGRQKESGSKWKVFIDQINRSLENYEPCSSQNCSCYHGV 60
Query: 251 IEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVMG 430
IEEDLTPFRGGISRKMMAEVVRRKLGTHYQI KNRLYRE+DCMFPSRCSGVEHFILEV+G
Sbjct: 61 IEEDLTPFRGGISRKMMAEVVRRKLGTHYQITKNRLYRENDCMFPSRCSGVEHFILEVIG 120
Query: 431 RLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTG 610
RLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTG
Sbjct: 121 RLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTG 180
Query: 611 LGRWDLFREDLLKSAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQ 790
LGRWDLFREDL++SAAQWPW+KKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQ
Sbjct: 181 LGRWDLFREDLVRSAAQWPWKKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQ 240
Query: 791 AWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWLEF 970
AWKSM+DTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVG+EWLEF
Sbjct: 241 AWKSMKDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWLEF 300
Query: 971 FYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
FYPQLKPWVHYIPVKTDLSNVQELLQFVKANDD+AQE
Sbjct: 301 FYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDVAQE 337
>ref|NP_076994.2| KDEL motif-containing protein 1 precursor [Homo sapiens].
Length = 502
Score = 129 bits (323), Expect = 6e-30
Identities = 90/294 (30%), Positives = 154/294 (52%), Gaps = 9/294 (3%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVVRR----KLGTHYQIIKNRLYRESDCMFPSRC 394
NC I+ DL F K+ E+ +R + HY + N++Y ++
Sbjct: 152 NCPETIAQIQRDLAHFPAVDPEKIAVEIPKRFGQRQSLCHYTLKDNKVYIKTHGEHVGFR 211
Query: 395 SGVEHFILEVMGR--LPDMEMVINVRDYPQVPKWMEPAI-PVFSFSKTSEYHDIMYPAWT 565
++ +L + + +PD+E+ +N+ D+P K I P+FS+ +++ DI+ P +
Sbjct: 212 IFMDAILLSLTRKVKMPDVELFVNLGDWPLEKKKSNSNIHPIFSWCGSTDSKDIVMPTYD 271
Query: 566 FWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDPLIL 739
+ + T +GR L D++ A PWE KNSTA +RG + ER L+
Sbjct: 272 LTDS------VLET-MGRVSL---DMMSVQANTGPPWESKNSTAVWRGRDSRKERLELVK 321
Query: 740 LSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHL 919
LSRK+P+L+DA +T +K ++ G P K + D K+KY N G A++R +L
Sbjct: 322 LSRKHPELIDAAFTNFFFFKHDENLYG-PIVKHISFFDFFKHKYQINIDGTVAAYRLPYL 380
Query: 920 FLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+ S+V + + E FY +L+PW HYIPVK++LS++ E L++ K +D+ A++
Sbjct: 381 LVGDSVVLKQDSIYYEHFYNELQPWKHYIPVKSNLSDLLEKLKWAKDHDEEAKK 434
>ref|NP_714916.3| KDEL motif-containing protein 2 precursor [Homo sapiens].
Length = 507
Score = 117 bits (293), Expect = 2e-26
Identities = 87/297 (29%), Positives = 144/297 (48%), Gaps = 12/297 (4%)
Frame = +2
Query: 227 NCSCYHGVIEEDLTPFRGGISRKMMAEVVRR---KLGT--HYQIIKNRLYRESDCMFPSR 391
+C I +D F ++M+ EV +R + G HY I+ N +YR S +
Sbjct: 155 SCPTKEPQIAKDFASFPSINLQQMLKEVPKRFGDERGAIVHYTILNNHVYRRSLGKYTDF 214
Query: 392 CSGVEHFILEVMGR--LPDMEMVINVRDYPQVPKWMEPA---IPVFSFSKTSEYHDIMYP 556
+ +L + + LPD+E +N+ D+P + + IP+ S+ + + D++ P
Sbjct: 215 KMFSDEILLSLTRKVLLPDLEFYVNLGDWPLEHRKVNGTPSPIPIISWCGSLDSRDVVLP 274
Query: 557 AWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQW--PWEKKNSTAYFRGSRTSPERDP 730
+ I + L DLL W K A+FRG + ER
Sbjct: 275 TYD----------ITHSMLEAMRGVTNDLLSIQGNTGPSWINKTERAFFRGRDSREERLQ 324
Query: 731 LILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRF 910
L+ LS++NP+L+DA T ++ + LGK AK + D KYKY N G A++R+
Sbjct: 325 LVQLSKENPQLLDAGITGYFFFQEKEKELGK--AKLMGFFDFFKYKYQVNVDGTVAAYRY 382
Query: 911 KHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQE 1081
+L L SLV + + E FY L+PW HY+P+K +LS++ E +++ K ND+ A++
Sbjct: 383 PYLMLGDSLVLKQDSPYYEHFYMALEPWKHYVPIKRNLSDLLEKVKWAKENDEEAKK 439
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,711,864
Number of extensions: 1058331
Number of successful extensions: 2831
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2825
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008053
(1083 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 327 7e-87
>Sscrofa_Chr13
|| Length = 218635234
Score = 327 bits (165), Expect = 7e-87
Identities = 168/169 (99%)
Strand = Plus / Minus
Query: 868 gtatctgtttaattttcggggtgtagctgcaagtttccggttcaaacacctctttctgtg 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150080827 gtatctgtttaattttcggggtgtagctgcaagtttccggttcaaacacctctttctgtg 150080768
Query: 928 tggttcacttgttttccatgttggtaatgagtggctggaattcttctatccacagctgaa 987
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 150080767 tggttcacttgttttccatgtgggtaatgagtggctggaattcttctatccacagctgaa 150080708
Query: 988 gccatgggttcactatatcccagtcaaaacagatctctccaatgtccag 1036
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150080707 gccatgggttcactatatcccagtcaaaacagatctctccaatgtccag 150080659
Score = 311 bits (157), Expect = 4e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 1 cggccatctttgtgcggggctgcgcttccgccggcgcagcggcggggcctccgcagtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150093320 cggccatctttgtgcggggctgcgcttccgccggcgcagcggcggggcctccgcagtggg 150093261
Query: 61 tcggctggcgatggagcggtgggcgctctcacatcttcggttgtggctgctgttgctcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150093260 tcggctggcgatggagcggtgggcgctctcacatcttcggttgtggctgctgttgctcct 150093201
Query: 121 cctgctcccggtgccgggccgccaaaaggagtcaggt 157
|||||||||||||||||||||||||||||||||||||
Sbjct: 150093200 cctgctcccggtgccgggccgccaaaaggagtcaggt 150093164
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 246 gtgtcatagaagaagatctgactcctttccgaggaggtatctccaggaagatgatggcgg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150090071 gtgtcatagaagaagatctgactcctttccgaggaggtatctccaggaagatgatggcgg 150090012
Query: 306 aggtagtcagacggaaactagggacccactatcagatcattaagaacagattataccgag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150090011 aggtagtcagacggaaactagggacccactatcagatcattaagaacagattataccgag 150089952
Query: 366 aaagtgactgcatgttcccttcaaggt 392
|||||||||||||||||||||||||||
Sbjct: 150089951 aaagtgactgcatgttcccttcaaggt 150089925
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 154 aggttcgaaatggaaagtacttattgaccaaattaacagagctttggaaaattatgaacc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150092288 aggttcgaaatggaaagtacttattgaccaaattaacagagctttggaaaattatgaacc 150092229
Query: 214 atgttcaagtcaaaactgcagctgctaccatgg 246
|||||||||||||||||||||||||||||||||
Sbjct: 150092228 atgttcaagtcaaaactgcagctgctaccatgg 150092196
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 809 gataccttgggaaagccagctgccaaggatgtccatcttgtggatcactgcaaatacaag 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150082321 gataccttgggaaagccagctgccaaggatgtccatcttgtggatcactgcaaatacaag 150082262
Query: 869 ta 870
||
Sbjct: 150082261 ta 150082260
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 1036 ggagctgttgcagtttgtaaaagcaaatgatgatatagcgcaagaaat 1083
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150079929 ggagctgttgcagtttgtaaaagcaaatgatgatatagcgcaagaaat 150079882
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,809,359
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 6
Length of query: 1083
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1062
Effective length of database: 2,808,413,156
Effective search space: 2982534771672
Effective search space used: 2982534771672
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)