Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008059
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015609.1| beta-1,4-galactosyltransferase 3 [Bos taurus]. 384 e-107
Alignment gi|NP_001033167.1| beta-1,4-galactosyltransferase 4 [Bos taurus]. 170 2e-42
Alignment gi|NP_803478.1| beta-1,4-galactosyltransferase 1 [Bos taurus]. 169 3e-42
Alignment gi|NP_001179525.1| beta-1,4-galactosyltransferase 6 [Bos taurus]. 151 8e-37
Alignment gi|XP_002697732.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,4- gala... 151 8e-37
Alignment gi|NP_001098500.1| beta-1,4-galactosyltransferase 2 [Bos taurus]. 151 1e-36
Alignment gi|XP_002692400.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,4- gala... 148 9e-36
Alignment gi|XP_586129.3| PREDICTED: UDP-Gal:betaGlcNAc beta 1,4- galacto... 148 9e-36
Alignment gi|NP_001068789.1| xylosylprotein beta 1,4-galactosyltransferas... 60 2e-09
>ref|NP_001015609.1| beta-1,4-galactosyltransferase 3 [Bos taurus].
Length = 396
Score = 384 bits (987), Expect = e-107
Identities = 191/246 (77%), Positives = 194/246 (78%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEP FDYSHPHDVYSNLSH+
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPAFDYSHPHDVYSNLSHMPGAPVAPG 69
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCP+R AEI+ERNPRVEPGGRYRPA CE RSRTA
Sbjct: 70 GLPAPQGLPYCPKRSPLLVGPISVSFSPVPSLAEIVERNPRVEPGGRYRPARCEPRSRTA 129
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 130 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 189
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 190 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 249
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 250 KMNGFP 255
>ref|NP_001033167.1| beta-1,4-galactosyltransferase 4 [Bos taurus].
Length = 341
Score = 170 bits (431), Expect = 2e-42
Identities = 85/152 (55%), Positives = 102/152 (67%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ +NP+V G RY P C A R AI++PHR RE+ QRQQL YGIY
Sbjct: 100 EVQAKNPKVHRG-RYHPEECRALQRVAILIPHRHREKHLLYLLEHLHPFLQRQQLDYGIY 158
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VIHQAG+ FNRAKLLNVG EAL+DE WDC HDVDL+PEND NLY C+ + PRH+ V
Sbjct: 159 VIHQAGSKKFNRAKLLNVGYIEALKDEIWDCFIFHDVDLVPENDLNLYRCEDQ-PRHLVV 217
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGF 1004
N GY L Y YFGGV+AL+ +Q+ K+NGF
Sbjct: 218 GRNSTGYRLRYSGYFGGVTALSREQFFKVNGF 249
>ref|NP_803478.1| beta-1,4-galactosyltransferase 1 [Bos taurus].
Length = 402
Score = 169 bits (429), Expect = 3e-42
Identities = 83/152 (54%), Positives = 107/152 (70%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
I ++NP+V+ GGRY P C + + AII+ R R++ QRQQL YGIYV
Sbjct: 158 IEQQNPKVKLGGRYTPMDCISPHKVAIIILFRNRQEHLKYWLYYLHPMVQRQQLDYGIYV 217
Query: 732 IHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVA 911
I+QAG FNRAKLLNVG +EAL+D +++C DVDL+P NDHN Y C + PRH++VA
Sbjct: 218 INQAGESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQ-PRHISVA 276
Query: 912 MNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
M+KFG+SLPY QYFGGVSAL+ Q+L +NGFP
Sbjct: 277 MDKFGFSLPYVQYFGGVSALSKQQFLSINGFP 308
>ref|NP_001179525.1| beta-1,4-galactosyltransferase 6 [Bos taurus].
Length = 382
Score = 151 bits (382), Expect = 8e-37
Identities = 69/153 (45%), Positives = 96/153 (62%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
++ ++ +EPGG +RP C+AR + A+++P R R + Q+Q+L + Y
Sbjct: 133 QLFSKDLDIEPGGHWRPKDCKARWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFY 192
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VI Q G FNRA L NVG +EA++D WDC+ HDVD LPEND N Y C PRH A
Sbjct: 193 VIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHLPENDRNYYGCGEM-PRHFAA 251
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 252 KLDKYMYILPYKEFFGGVSGLTVEQFRKINGFP 284
>ref|XP_002697732.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase,
polypeptide 6 [Bos taurus].
Length = 382
Score = 151 bits (382), Expect = 8e-37
Identities = 69/153 (45%), Positives = 96/153 (62%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
++ ++ +EPGG +RP C+AR + A+++P R R + Q+Q+L + Y
Sbjct: 133 QLFSKDLDIEPGGHWRPKDCKARWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFY 192
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VI Q G FNRA L NVG +EA++D WDC+ HDVD LPEND N Y C PRH A
Sbjct: 193 VIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHLPENDRNYYGCGEM-PRHFAA 251
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 252 KLDKYMYILPYKEFFGGVSGLTVEQFRKINGFP 284
>ref|NP_001098500.1| beta-1,4-galactosyltransferase 2 [Bos taurus].
Length = 369
Score = 151 bits (381), Expect = 1e-36
Identities = 77/153 (50%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ NP V GGRY P C A+I+P R RE +RQ+L YGIYV
Sbjct: 118 VQRENPGVLLGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGIYV 177
Query: 732 IHQAGNGTFNRAKLLNVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
I+Q G TFNRAKLLNVG EAL+ D ++C DVDL+P +D NLY C + PRH A+
Sbjct: 178 INQHGEDTFNRAKLLNVGFLEALKEDSTYNCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAI 236
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
AM+KFG+ LPY YFGGVS L Q+L++NGFP
Sbjct: 237 AMDKFGFRLPYAGYFGGVSGLNKSQFLRINGFP 269
>ref|XP_002692400.1| PREDICTED: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase,
polypeptide 5 [Bos taurus].
Length = 352
Score = 148 bits (373), Expect = 9e-36
Identities = 68/153 (44%), Positives = 97/153 (63%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ ++P ++ GG ++P+ C R + AI+VP R R + QRQ+L + Y
Sbjct: 103 ELFSKDPTIKLGGHWKPSDCVPRWKVAILVPFRNRHEHLPVLLRHLIPMLQRQRLRFAFY 162
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
V+ Q G FNRA L NVG +EA++D +WDCL HDVD +PE+D N Y C + PRH A
Sbjct: 163 VVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCG-QMPRHFAT 221
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 222 KLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFP 254
>ref|XP_586129.3| PREDICTED: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 5 [Bos
taurus].
Length = 352
Score = 148 bits (373), Expect = 9e-36
Identities = 68/153 (44%), Positives = 97/153 (63%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ ++P ++ GG ++P+ C R + AI+VP R R + QRQ+L + Y
Sbjct: 103 ELFSKDPTIKLGGHWKPSDCVPRWKVAILVPFRNRHEHLPVLLRHLIPMLQRQRLRFAFY 162
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
V+ Q G FNRA L NVG +EA++D +WDCL HDVD +PE+D N Y C + PRH A
Sbjct: 163 VVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCG-QMPRHFAT 221
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 222 KLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFP 254
>ref|NP_001068789.1| xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 [Bos
taurus].
Length = 259
Score = 60.5 bits (145), Expect = 2e-09
Identities = 40/122 (32%), Positives = 58/122 (47%)
Frame = +3
Query: 621 RTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREAL 800
R A++VP R R + ++++ + IYV++Q + FNRA L+N G E+
Sbjct: 94 RLAVLVPFRERFEELLVFVPHMHRFLSKKKIQHHIYVLNQVDHFRFNRAALINAGFLES- 152
Query: 801 RDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPD 980
D + +HDVDLLP N+ Y GP HVA Y Y Y GG+ L+
Sbjct: 153 -GNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYH--YKTYVGGILLLSKQ 209
Query: 981 QY 986
Y
Sbjct: 210 HY 211
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,264,067
Number of extensions: 1186277
Number of successful extensions: 4940
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4888
Number of HSP's successfully gapped: 9
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008059
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860359.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1... 389 e-108
Alignment gi|XP_545767.2| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1... 389 e-108
Alignment gi|XP_860296.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1... 389 e-108
Alignment gi|XP_538701.2| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1... 171 8e-43
Alignment gi|XP_533600.2| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1... 170 2e-42
Alignment gi|NP_001120970.1| beta-1,4-galactosyltransferase 4 [Canis lupu... 170 2e-42
Alignment gi|XP_539644.1| PREDICTED: similar to Beta-1,4-galactosyltransf... 152 6e-37
Alignment gi|XP_547621.2| PREDICTED: similar to Beta-1,4-galactosyltransf... 149 3e-36
Alignment gi|XP_543044.2| PREDICTED: similar to Beta-1,4-galactosyltransf... 148 9e-36
Alignment gi|XP_538566.2| PREDICTED: similar to Beta-1,4-galactosyltransf... 67 4e-11
>ref|XP_860359.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta
1,4-galactosyltransferase, polypeptide 3 isoform 4 [Canis
familiaris].
Length = 396
Score = 389 bits (999), Expect = e-108
Identities = 194/246 (78%), Positives = 195/246 (79%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQ PTFDYSHPHDVYSNLSHL
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQGPTFDYSHPHDVYSNLSHLPGAPVAPG 69
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEI+ERNPRVEPGGRYRPAGCE RSRTA
Sbjct: 70 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTA 129
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 130 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 189
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 190 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 249
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 250 KMNGFP 255
>ref|XP_545767.2| PREDICTED: similar to UDP-Gal:betaGlcNAc beta
1,4-galactosyltransferase, polypeptide 3 isoform 1 [Canis
familiaris].
Length = 396
Score = 389 bits (999), Expect = e-108
Identities = 194/246 (78%), Positives = 195/246 (79%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQ PTFDYSHPHDVYSNLSHL
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQGPTFDYSHPHDVYSNLSHLPGAPVAPG 69
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEI+ERNPRVEPGGRYRPAGCE RSRTA
Sbjct: 70 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTA 129
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 130 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 189
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 190 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 249
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 250 KMNGFP 255
>ref|XP_860296.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1,4-
galactosyltransferase 3 isoform 3 [Canis familiaris].
Length = 313
Score = 389 bits (999), Expect = e-108
Identities = 194/246 (78%), Positives = 195/246 (79%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQ PTFDYSHPHDVYSNLSHL
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQGPTFDYSHPHDVYSNLSHLPGAPVAPG 69
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEI+ERNPRVEPGGRYRPAGCE RSRTA
Sbjct: 70 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTA 129
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 130 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 189
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 190 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 249
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 250 KMNGFP 255
>ref|XP_538701.2| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1,4-
galactosyltransferase 1, membrane-bound form [Canis
familiaris].
Length = 468
Score = 171 bits (434), Expect = 8e-43
Identities = 82/152 (53%), Positives = 108/152 (71%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ ++NP V+ GGRY P C + + AII+P R R++ QRQQL YGIYV
Sbjct: 224 VEKQNPEVKVGGRYTPKNCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYV 283
Query: 732 IHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVA 911
I+QAG FNRAKLLN+G +EAL+D +++C DVDL+P NDHN Y C + PRH++VA
Sbjct: 284 INQAGETMFNRAKLLNIGFQEALKDYDYNCFVFSDVDLIPMNDHNAYRCFSQ-PRHISVA 342
Query: 912 MNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
M+KFG+SLPY QYFGGVSAL+ +Q+L +NGFP
Sbjct: 343 MDKFGFSLPYVQYFGGVSALSKEQFLTINGFP 374
>ref|XP_533600.2| PREDICTED: similar to UDP-Gal:betaGlcNAc beta
1,4-galactosyltransferase, polypeptide 3 [Canis
familiaris].
Length = 356
Score = 170 bits (431), Expect = 2e-42
Identities = 89/203 (43%), Positives = 114/203 (56%)
Frame = +3
Query: 399 DVYSNLSHLHXXXXXXXXXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVE 578
DVY+NLS +H CP +++E+NP VE
Sbjct: 65 DVYTNLSQIHPVGVSEEDLPS------CPLISPYINGPLKVMIPENLTMEQVVEKNPLVE 118
Query: 579 PGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTF 758
GG+YRP C R TA++VP+ + Q QRQQL Y IYV++Q F
Sbjct: 119 LGGQYRPPDCWTRHHTAVVVPYYGQVQHLQHLLFHLHPFLQRQQLHYAIYVVNQVHTTAF 178
Query: 759 NRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLP 938
NR KL NVG EA+++EEWDC+F HDV+LLPE+D NLY+CD P HV+VA++KF Y LP
Sbjct: 179 NRGKLRNVGFWEAMQEEEWDCVFFHDVNLLPEDDRNLYICD-IFPAHVSVAIDKFNYKLP 237
Query: 939 YPQYFGGVSALTPDQYLKMNGFP 1007
Y Y GGV AL P YL++NGFP
Sbjct: 238 YHGYLGGVFALRPTHYLRINGFP 260
>ref|NP_001120970.1| beta-1,4-galactosyltransferase 4 [Canis lupus familiaris].
Length = 344
Score = 170 bits (430), Expect = 2e-42
Identities = 83/152 (54%), Positives = 102/152 (67%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ +NP+V G RY P C+A R AI++PHR RE+ QRQQL YGIY
Sbjct: 100 EVAAKNPQVHRG-RYHPEECKALQRVAILIPHRNRERHLMYLLEHLHPFLQRQQLDYGIY 158
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
+IHQAG FNRAKLLNVG EAL+DE WDC HDVDL+PEND NLY C+ + P+H+ V
Sbjct: 159 IIHQAGTKKFNRAKLLNVGYLEALKDENWDCFIFHDVDLVPENDLNLYKCEEQ-PKHLVV 217
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGF 1004
N GY L Y YFGGV+AL+ +Q+ K+NGF
Sbjct: 218 GRNSTGYRLRYSGYFGGVTALSREQFFKVNGF 249
>ref|XP_539644.1| PREDICTED: similar to Beta-1,4-galactosyltransferase 2
(Beta-1,4-GalTase 2) (Beta4Gal-T2) (b4Gal-T2)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 2) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 2) [Canis familiaris].
Length = 369
Score = 152 bits (383), Expect = 6e-37
Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ NP V GGRY P C A+I+P R RE +RQ+L YG+YV
Sbjct: 118 VQRENPGVLLGGRYAPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 177
Query: 732 IHQAGNGTFNRAKLLNVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
I+Q G TFNRAKLLNVG EAL+ D +DC DVDL+P +D NLY C + PRH A+
Sbjct: 178 INQHGEDTFNRAKLLNVGFLEALKEDATYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAI 236
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
AM+KFG+ LPY YFGGVS L+ Q+L++NGFP
Sbjct: 237 AMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFP 269
>ref|XP_547621.2| PREDICTED: similar to Beta-1,4-galactosyltransferase 6
(Beta-1,4-GalTase 6) (Beta4Gal-T6) (b4Gal-T6)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 6) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 6) [Canis familiaris].
Length = 382
Score = 149 bits (377), Expect = 3e-36
Identities = 68/153 (44%), Positives = 95/153 (62%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
++ ++ +EPGG +RP C+ R + A+++P R R + Q+Q+L + Y
Sbjct: 133 QLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFY 192
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VI Q G FNRA L NVG +EA++D WDC+ HDVD LPEND N Y C PRH A
Sbjct: 193 VIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHLPENDRNYYGCGEM-PRHFAA 251
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 252 KLDKYMYILPYKEFFGGVSGLTVEQFRKINGFP 284
>ref|XP_543044.2| PREDICTED: similar to Beta-1,4-galactosyltransferase 5
(Beta-1,4-GalTase 5) (Beta4Gal-T5) (b4Gal-T5)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 5) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 5) (Beta-1,4-GalT II)...
[Canis familiaris].
Length = 434
Score = 148 bits (373), Expect = 9e-36
Identities = 68/153 (44%), Positives = 97/153 (63%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
EI ++P ++ GG ++P+ C R + AI++P R R + QRQ+L + Y
Sbjct: 185 EIFSKDPAIKLGGHWKPSDCLPRWKVAILIPFRNRHEHLPVLLRHLIPMLQRQRLRFAFY 244
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
V+ Q G FNRA L NVG +EA++D +WDCL HDVD +PE+D N Y C + PRH A
Sbjct: 245 VVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCG-QMPRHFAT 303
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 304 KLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFP 336
>ref|XP_538566.2| PREDICTED: similar to Beta-1,4-galactosyltransferase 7
(Beta-1,4-GalTase 7) (Beta4Gal-T7) (b4Gal-T7)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,4-galactosyltransferase 7) (UDP-Gal:beta-GlcNAc
beta-1,4-galactosyltransferase 7) [Canis familiaris].
Length = 316
Score = 66.6 bits (161), Expect = 4e-11
Identities = 47/145 (32%), Positives = 65/145 (44%)
Frame = +3
Query: 567 PRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAG 746
P P R+ R A++VP R R + R+++ + IYV++Q
Sbjct: 65 PPEPPPERWAEDASWGPHRLAVLVPFRERFEELLVFVPHLHRFLSRKKIPHHIYVLNQVD 124
Query: 747 NGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFG 926
+ FNRA L+NVG E+ D + +HDVDLLP N+ Y GP HVA
Sbjct: 125 HFRFNRAALINVGFLES--SNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPL 182
Query: 927 YSLPYPQYFGGVSALTPDQYLKMNG 1001
Y Y Y GG+ L+ Y NG
Sbjct: 183 YH--YKTYVGGILLLSKQHYQLCNG 205
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,974,711
Number of extensions: 1219353
Number of successful extensions: 4835
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4783
Number of HSP's successfully gapped: 10
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008059
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927383.1| PREDICTED: beta-1,4-galactosyltransferase 3 ... 401 e-112
Alignment gi|XP_001927370.3| PREDICTED: beta-1,4-galactosyltransferase 3 ... 401 e-112
Alignment gi|XP_003355134.1| PREDICTED: beta-1,4-galactosyltransferase 3-... 401 e-112
Alignment gi|XP_003130728.1| PREDICTED: beta-1,4-galactosyltransferase 1 ... 171 8e-43
Alignment gi|XP_003127433.1| PREDICTED: beta-1,4-galactosyltransferase 3-... 169 3e-42
Alignment gi|XP_003127934.2| PREDICTED: beta-1,4-galactosyltransferase 6 ... 149 2e-36
Alignment gi|XP_003134538.1| PREDICTED: beta-1,4-galactosyltransferase 5 ... 149 3e-36
Alignment gi|XP_003356442.1| PREDICTED: beta-1,4-galactosyltransferase 6 ... 111 6e-25
Alignment gi|NP_001161894.1| beta-1,4-galactosyltransferase 7 [Sus scrofa]. 65 8e-11
Alignment gi|XP_003358848.1| PREDICTED: hypothetical protein LOC397380 [S... 60 3e-09
>ref|XP_001927383.1| PREDICTED: beta-1,4-galactosyltransferase 3 isoform 2 [Sus scrofa].
Length = 396
Score = 401 bits (1030), Expect = e-112
Identities = 199/246 (80%), Positives = 199/246 (80%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLH
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHGAPVAPG 69
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEIMERNPRVEPGGRYRPAGCEARSRTA
Sbjct: 70 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIMERNPRVEPGGRYRPAGCEARSRTA 129
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRAREQ QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 130 IIVPHRAREQHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 189
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 190 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 249
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 250 KMNGFP 255
>ref|XP_001927370.3| PREDICTED: beta-1,4-galactosyltransferase 3 isoform 1 [Sus scrofa].
Length = 396
Score = 401 bits (1030), Expect = e-112
Identities = 199/246 (80%), Positives = 199/246 (80%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLH
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHGAPVAPG 69
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEIMERNPRVEPGGRYRPAGCEARSRTA
Sbjct: 70 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIMERNPRVEPGGRYRPAGCEARSRTA 129
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRAREQ QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 130 IIVPHRAREQHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 189
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 190 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 249
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 250 KMNGFP 255
>ref|XP_003355134.1| PREDICTED: beta-1,4-galactosyltransferase 3-like [Sus scrofa].
Length = 402
Score = 401 bits (1030), Expect = e-112
Identities = 199/246 (80%), Positives = 199/246 (80%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLH
Sbjct: 16 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHGAPVAPG 75
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEIMERNPRVEPGGRYRPAGCEARSRTA
Sbjct: 76 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIMERNPRVEPGGRYRPAGCEARSRTA 135
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRAREQ QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 136 IIVPHRAREQHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 195
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 196 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 255
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 256 KMNGFP 261
>ref|XP_003130728.1| PREDICTED: beta-1,4-galactosyltransferase 1 [Sus scrofa].
Length = 401
Score = 171 bits (432), Expect = 8e-43
Identities = 81/152 (53%), Positives = 106/152 (69%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ ++NP V GG Y P C + + AII+P R R++ QRQQL YG+YV
Sbjct: 157 VEKQNPEVNMGGHYTPKDCTSPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGVYV 216
Query: 732 IHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVA 911
I+QAG FNRAKLLNVG +EAL+D +++C DVDL+P NDHN Y C + PRH++VA
Sbjct: 217 INQAGESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNAYRCFSQ-PRHISVA 275
Query: 912 MNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
M+KFG+SLPY QYFGGVSAL+ +Q+L +NGFP
Sbjct: 276 MDKFGFSLPYVQYFGGVSALSKEQFLTINGFP 307
>ref|XP_003127433.1| PREDICTED: beta-1,4-galactosyltransferase 3-like [Sus scrofa].
Length = 371
Score = 169 bits (427), Expect = 3e-42
Identities = 88/203 (43%), Positives = 114/203 (56%)
Frame = +3
Query: 399 DVYSNLSHLHXXXXXXXXXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVE 578
DVYSNLS +H CP +++E+NP VE
Sbjct: 80 DVYSNLSQIHPMDLSDEDLPN------CPAISPYINGPLKVMIPENLTMEQVVEKNPLVE 133
Query: 579 PGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTF 758
GG+Y P C TA++VP+ + + QRQQL YGIYV++Q + F
Sbjct: 134 LGGQYWPPDCWTHHHTAVVVPYYGQARHLQHLLFHLHPFLQRQQLHYGIYVVNQVNSTAF 193
Query: 759 NRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLP 938
NR KL NVG EA+++E+WDC+F HDV+LLPE+D NLY+CD P HVAVA++KF Y LP
Sbjct: 194 NRGKLRNVGFWEAMQEEDWDCVFFHDVNLLPEDDRNLYICD-IFPAHVAVAIDKFNYKLP 252
Query: 939 YPQYFGGVSALTPDQYLKMNGFP 1007
Y Y GGV AL P YL++NGFP
Sbjct: 253 YRGYLGGVFALRPIHYLRINGFP 275
>ref|XP_003127934.2| PREDICTED: beta-1,4-galactosyltransferase 6 isoform 1 [Sus scrofa].
Length = 382
Score = 149 bits (377), Expect = 2e-36
Identities = 68/153 (44%), Positives = 95/153 (62%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
++ ++ +EPGG +RP C+ R + A+++P R R + Q+Q+L + Y
Sbjct: 133 QLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFY 192
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VI Q G FNRA L NVG +EA++D WDC+ HDVD LPEND N Y C PRH A
Sbjct: 193 VIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHLPENDRNYYGCGEM-PRHFAA 251
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 252 KLDKYMYILPYKEFFGGVSGLTVEQFRKINGFP 284
>ref|XP_003134538.1| PREDICTED: beta-1,4-galactosyltransferase 5 [Sus scrofa].
Length = 388
Score = 149 bits (375), Expect = 3e-36
Identities = 68/153 (44%), Positives = 97/153 (63%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ ++P ++ GG ++P+ C R + AI++P R R + QRQ+L + Y
Sbjct: 139 ELFSKDPAIKLGGHWKPSDCVPRWKVAILIPFRNRHEHLPVLLRHLIPMLQRQRLQFAFY 198
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
V+ Q G FNRA L NVG +EA++D +WDCL HDVD +PEND N Y C + PRH A
Sbjct: 199 VVEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLVFHDVDHIPENDRNYYGCG-QMPRHFAT 257
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 258 KLDKYMYLLPYNEFFGGVSGLTVEQFRKINGFP 290
>ref|XP_003356442.1| PREDICTED: beta-1,4-galactosyltransferase 6 isoform 2 [Sus scrofa].
Length = 343
Score = 111 bits (278), Expect = 6e-25
Identities = 58/153 (37%), Positives = 78/153 (50%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
++ ++ +EPGG +RP C+ R +T
Sbjct: 133 QLFSKDLDIEPGGHWRPKDCKPRWKT---------------------------------- 158
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
G FNRA L NVG +EA++D WDC+ HDVD LPEND N Y C PRH A
Sbjct: 159 -----GTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHLPENDRNYYGCGEM-PRHFAA 212
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 213 KLDKYMYILPYKEFFGGVSGLTVEQFRKINGFP 245
>ref|NP_001161894.1| beta-1,4-galactosyltransferase 7 [Sus scrofa].
Length = 327
Score = 64.7 bits (156), Expect = 8e-11
Identities = 43/127 (33%), Positives = 61/127 (48%)
Frame = +3
Query: 621 RTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREAL 800
R A++VP R R + ++++ + IYV++Q + FNRA L+NVG E+
Sbjct: 94 RLAVLVPFRERFEELLVFVPHMHRFLSKKKIQHHIYVLNQVDHFRFNRAALINVGFLES- 152
Query: 801 RDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPD 980
D + +HDVDLLP N+ Y GP HVA Y Y Y GG+ L+
Sbjct: 153 -GNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYH--YKTYVGGILLLSKQ 209
Query: 981 QYLKMNG 1001
Y NG
Sbjct: 210 HYQLCNG 216
>ref|XP_003358848.1| PREDICTED: hypothetical protein LOC397380 [Sus scrofa].
Length = 493
Score = 59.7 bits (143), Expect = 3e-09
Identities = 30/64 (46%), Positives = 36/64 (56%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ NP+V G RY P C A R AI++PHR RE+ QRQQL YGIY
Sbjct: 100 EVRAENPKVHRG-RYHPEECRAVQRVAILIPHRHREKHLLYLLEHLHPFLQRQQLDYGIY 158
Query: 729 VIHQ 740
+IHQ
Sbjct: 159 IIHQ 162
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,667,116
Number of extensions: 768429
Number of successful extensions: 3421
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3369
Number of HSP's successfully gapped: 11
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008059
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065604.2| beta-1,4-galactosyltransferase 3 [Mus musculus]. 379 e-105
Alignment gi|NP_062778.2| beta-1,4-galactosyltransferase 4 [Mus musculus]. 169 2e-42
Alignment gi|NP_071641.1| beta-1,4-galactosyltransferase 1 [Mus musculus]. 166 2e-41
Alignment gi|NP_059073.1| beta-1,4-galactosyltransferase 2 [Mus musculus]. 152 4e-37
Alignment gi|NP_062809.2| beta-1,4-galactosyltransferase 5 [Mus musculus]. 150 2e-36
Alignment gi|NP_062711.1| beta-1,4-galactosyltransferase 6 [Mus musculus]. 149 4e-36
Alignment gi|NP_666157.1| beta-1,4-galactosyltransferase 7 [Mus musculus]. 66 4e-11
>ref|NP_065604.2| beta-1,4-galactosyltransferase 3 [Mus musculus].
Length = 395
Score = 379 bits (972), Expect = e-105
Identities = 191/246 (77%), Positives = 193/246 (78%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGR+ PTFDYSHPHDVYSNLSHL
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGRDPGPTFDYSHPHDVYSNLSHL-PAAPGAA 68
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEI+ERNPRVE GGRYRPAGCE RSRTA
Sbjct: 69 GAPPAQALPYCPERSPFLVGPVSVSFSPVPSLAEIVERNPRVESGGRYRPAGCEPRSRTA 128
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 129 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 188
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 189 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 248
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 249 KMNGFP 254
>ref|NP_062778.2| beta-1,4-galactosyltransferase 4 [Mus musculus].
Length = 344
Score = 169 bits (429), Expect = 2e-42
Identities = 83/152 (54%), Positives = 102/152 (67%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
EI NP+V G RY P C+A R AI++PHR RE+ QRQQL YGIY
Sbjct: 100 EIEAENPKVSRG-RYHPEECKALQRVAILIPHRNREKHLIYLLEHLHPFLQRQQLDYGIY 158
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
+IHQ G+ FNRAKLLNVG EAL++E WDC HDVDL+PEND NLY C + P+H+ V
Sbjct: 159 IIHQTGSKKFNRAKLLNVGYLEALKEENWDCFVFHDVDLVPENDFNLYTCGDQ-PKHLVV 217
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGF 1004
N GY L Y +YFGGV+AL+ +Q+LK+NGF
Sbjct: 218 GRNSTGYRLRYSKYFGGVTALSREQFLKVNGF 249
>ref|NP_071641.1| beta-1,4-galactosyltransferase 1 [Mus musculus].
Length = 399
Score = 166 bits (421), Expect = 2e-41
Identities = 79/152 (51%), Positives = 107/152 (70%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ ++NP ++ GGRY P C + + AII+P R R++ QRQQL YGIYV
Sbjct: 155 LAKKNPEIKTGGRYSPKDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYV 214
Query: 732 IHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVA 911
I+QAG+ FNRAKLLN+G +EAL+D +++C DVDL+P +D N Y C + PRH++VA
Sbjct: 215 INQAGDTMFNRAKLLNIGFQEALKDYDYNCFVFSDVDLIPMDDRNAYRCFSQ-PRHISVA 273
Query: 912 MNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
M+KFG+SLPY QYFGGVSAL+ Q+L +NGFP
Sbjct: 274 MDKFGFSLPYVQYFGGVSALSKQQFLAINGFP 305
>ref|NP_059073.1| beta-1,4-galactosyltransferase 2 [Mus musculus].
Length = 369
Score = 152 bits (384), Expect = 4e-37
Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ NP V GGRY P C A+I+P R RE +RQ+L YG+YV
Sbjct: 118 VQRENPGVLLGGRYSPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPMLRRQRLRYGVYV 177
Query: 732 IHQAGNGTFNRAKLLNVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
I+Q G TFNRAKLLNVG EAL+ D +DC DVDL+P +D NLY C + PRH A+
Sbjct: 178 INQHGEETFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAI 236
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
AM+KFG+ LPY YFGGVS L+ Q+L++NGFP
Sbjct: 237 AMDKFGFRLPYASYFGGVSGLSKAQFLRINGFP 269
>ref|NP_062809.2| beta-1,4-galactosyltransferase 5 [Mus musculus].
Length = 388
Score = 150 bits (379), Expect = 2e-36
Identities = 70/153 (45%), Positives = 97/153 (63%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ R+P ++ GG ++PA C R + AI++P R R + QRQ+L + Y
Sbjct: 139 ELFSRDPAIKLGGHWKPADCVPRWKVAILIPFRNRHEHLPVLLRHLLPMLQRQRLQFAFY 198
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VI Q G FNRA L NVG +EA++D +WDCL HDVD +PE+D N Y C + PRH A
Sbjct: 199 VIEQVGTQPFNRAMLFNVGFQEAMKDLDWDCLIFHDVDHIPESDRNYYGCG-QMPRHFAT 257
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 258 KLDKYMYLLPYTEFFGGVSGLTVEQFRKINGFP 290
>ref|NP_062711.1| beta-1,4-galactosyltransferase 6 [Mus musculus].
Length = 382
Score = 149 bits (375), Expect = 4e-36
Identities = 67/153 (43%), Positives = 94/153 (61%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
++ ++ + PGG +RP C+ R + A+++P R R + Q+Q+L + Y
Sbjct: 133 QLFSKDSEIGPGGHWRPKDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFY 192
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VI Q G FNRA L NVG +EA++D WDC+ HDVD LPEND N Y C PRH A
Sbjct: 193 VIEQTGTQPFNRAMLFNVGFKEAMKDRAWDCVIFHDVDHLPENDRNYYGCGEM-PRHFAA 251
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 252 KLDKYMYILPYKEFFGGVSGLTVEQFRKINGFP 284
>ref|NP_666157.1| beta-1,4-galactosyltransferase 7 [Mus musculus].
Length = 327
Score = 66.2 bits (160), Expect = 4e-11
Identities = 44/127 (34%), Positives = 61/127 (48%)
Frame = +3
Query: 621 RTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREAL 800
R A++VP R R + R+++ + IYV++Q + FNRA L+NVG E+
Sbjct: 94 RLAVLVPFRERFEELLVFVPHMHRFLSRKRIQHHIYVLNQVDHFRFNRAALINVGFLES- 152
Query: 801 RDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPD 980
D + +HDVDLLP N+ Y GP HVA Y Y Y GG+ L+
Sbjct: 153 -SNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYH--YKTYVGGILLLSKQ 209
Query: 981 QYLKMNG 1001
Y NG
Sbjct: 210 HYQLCNG 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,450,554
Number of extensions: 985042
Number of successful extensions: 3961
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3912
Number of HSP's successfully gapped: 7
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008059
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186803.1| beta-1,4-galactosyltransferase 3 [Homo sapie... 381 e-106
Alignment gi|NP_003770.1| beta-1,4-galactosyltransferase 3 [Homo sapiens]. 381 e-106
Alignment gi|NP_001186802.1| beta-1,4-galactosyltransferase 3 [Homo sapie... 381 e-106
Alignment gi|NP_001488.2| beta-1,4-galactosyltransferase 1 [Homo sapiens]. 171 1e-42
Alignment gi|NP_997708.1| beta-1,4-galactosyltransferase 4 [Homo sapiens]. 168 6e-42
Alignment gi|NP_003769.1| beta-1,4-galactosyltransferase 4 [Homo sapiens]. 168 6e-42
Alignment gi|NP_085076.2| beta-1,4-galactosyltransferase 2 isoform a [Hom... 152 5e-37
Alignment gi|NP_001005417.1| beta-1,4-galactosyltransferase 2 isoform b [... 152 5e-37
Alignment gi|NP_003771.1| beta-1,4-galactosyltransferase 2 isoform b [Hom... 152 5e-37
Alignment gi|NP_004766.2| beta-1,4-galactosyltransferase 6 [Homo sapiens]. 149 3e-36
>ref|NP_001186803.1| beta-1,4-galactosyltransferase 3 [Homo sapiens].
Length = 393
Score = 381 bits (978), Expect = e-106
Identities = 192/246 (78%), Positives = 194/246 (78%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGR+Q PTFDYSHP DVYSNLSHL
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHL---PGAPG 66
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEI+ERNPRVEPGGRYRPAGCE RSRTA
Sbjct: 67 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTA 126
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 127 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 186
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 187 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 246
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 247 KMNGFP 252
>ref|NP_003770.1| beta-1,4-galactosyltransferase 3 [Homo sapiens].
Length = 393
Score = 381 bits (978), Expect = e-106
Identities = 192/246 (78%), Positives = 194/246 (78%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGR+Q PTFDYSHP DVYSNLSHL
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHL---PGAPG 66
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEI+ERNPRVEPGGRYRPAGCE RSRTA
Sbjct: 67 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTA 126
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 127 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 186
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 187 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 246
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 247 KMNGFP 252
>ref|NP_001186802.1| beta-1,4-galactosyltransferase 3 [Homo sapiens].
Length = 393
Score = 381 bits (978), Expect = e-106
Identities = 192/246 (78%), Positives = 194/246 (78%)
Frame = +3
Query: 270 CTLALLVGSQLAVMMYLSLGGFRSLSALFGREQEPTFDYSHPHDVYSNLSHLHXXXXXXX 449
CTLALLVGSQLAVMMYLSLGGFRSLSALFGR+Q PTFDYSHP DVYSNLSHL
Sbjct: 10 CTLALLVGSQLAVMMYLSLGGFRSLSALFGRDQGPTFDYSHPRDVYSNLSHL---PGAPG 66
Query: 450 XXXXXXXXXYCPERXXXXXXXXXXXXXXXXXXAEIMERNPRVEPGGRYRPAGCEARSRTA 629
YCPER AEI+ERNPRVEPGGRYRPAGCE RSRTA
Sbjct: 67 GPPAPQGLPYCPERSPLLVGPVSVSFSPVPSLAEIVERNPRVEPGGRYRPAGCEPRSRTA 126
Query: 630 IIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 809
IIVPHRARE QRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE
Sbjct: 127 IIVPHRAREHHLRLLLYHLHPFLQRQQLAYGIYVIHQAGNGTFNRAKLLNVGVREALRDE 186
Query: 810 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 989
EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL
Sbjct: 187 EWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVAMNKFGYSLPYPQYFGGVSALTPDQYL 246
Query: 990 KMNGFP 1007
KMNGFP
Sbjct: 247 KMNGFP 252
>ref|NP_001488.2| beta-1,4-galactosyltransferase 1 [Homo sapiens].
Length = 398
Score = 171 bits (433), Expect = 1e-42
Identities = 83/152 (54%), Positives = 107/152 (70%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ ++NP V+ GGRY P C + + AII+P R R++ QRQQL YGIYV
Sbjct: 154 VAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYV 213
Query: 732 IHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAVA 911
I+QAG+ FNRAKLLNVG +EAL+D ++ C DVDL+P NDHN Y C + PRH++VA
Sbjct: 214 INQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQ-PRHISVA 272
Query: 912 MNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
M+KFG+SLPY QYFGGVSAL+ Q+L +NGFP
Sbjct: 273 MDKFGFSLPYVQYFGGVSALSKQQFLTINGFP 304
>ref|NP_997708.1| beta-1,4-galactosyltransferase 4 [Homo sapiens].
Length = 344
Score = 168 bits (426), Expect = 6e-42
Identities = 84/152 (55%), Positives = 100/152 (65%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ NP+V G RYRP C+A R AI+VPHR RE+ QRQQL YGIY
Sbjct: 100 EVQAENPKVSRG-RYRPQECKALQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIY 158
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VIHQA FNRAKLLNVG EAL++E WDC HDVDL+PEND NLY C+ P+H+ V
Sbjct: 159 VIHQAEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEH-PKHLVV 217
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGF 1004
N GY L Y YFGGV+AL+ +Q+ K+NGF
Sbjct: 218 GRNSTGYRLRYSGYFGGVTALSREQFFKVNGF 249
>ref|NP_003769.1| beta-1,4-galactosyltransferase 4 [Homo sapiens].
Length = 344
Score = 168 bits (426), Expect = 6e-42
Identities = 84/152 (55%), Positives = 100/152 (65%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
E+ NP+V G RYRP C+A R AI+VPHR RE+ QRQQL YGIY
Sbjct: 100 EVQAENPKVSRG-RYRPQECKALQRVAILVPHRNREKHLMYLLEHLHPFLQRQQLDYGIY 158
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VIHQA FNRAKLLNVG EAL++E WDC HDVDL+PEND NLY C+ P+H+ V
Sbjct: 159 VIHQAEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEEH-PKHLVV 217
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGF 1004
N GY L Y YFGGV+AL+ +Q+ K+NGF
Sbjct: 218 GRNSTGYRLRYSGYFGGVTALSREQFFKVNGF 249
>ref|NP_085076.2| beta-1,4-galactosyltransferase 2 isoform a [Homo sapiens].
Length = 401
Score = 152 bits (384), Expect = 5e-37
Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ NP V GGRY P C A+I+P R RE +RQ+L YG+YV
Sbjct: 150 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 209
Query: 732 IHQAGNGTFNRAKLLNVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
I+Q G TFNRAKLLNVG EAL+ D +DC DVDL+P +D NLY C + PRH A+
Sbjct: 210 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAI 268
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
AM+KFG+ LPY YFGGVS L+ Q+L++NGFP
Sbjct: 269 AMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFP 301
>ref|NP_001005417.1| beta-1,4-galactosyltransferase 2 isoform b [Homo sapiens].
Length = 372
Score = 152 bits (384), Expect = 5e-37
Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ NP V GGRY P C A+I+P R RE +RQ+L YG+YV
Sbjct: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
Query: 732 IHQAGNGTFNRAKLLNVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
I+Q G TFNRAKLLNVG EAL+ D +DC DVDL+P +D NLY C + PRH A+
Sbjct: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAI 239
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
AM+KFG+ LPY YFGGVS L+ Q+L++NGFP
Sbjct: 240 AMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFP 272
>ref|NP_003771.1| beta-1,4-galactosyltransferase 2 isoform b [Homo sapiens].
Length = 372
Score = 152 bits (384), Expect = 5e-37
Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 552 IMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIYV 731
+ NP V GGRY P C A+I+P R RE +RQ+L YG+YV
Sbjct: 121 VQRENPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYV 180
Query: 732 IHQAGNGTFNRAKLLNVGVREALR-DEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
I+Q G TFNRAKLLNVG EAL+ D +DC DVDL+P +D NLY C + PRH A+
Sbjct: 181 INQHGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLVPMDDRNLYRCGDQ-PRHFAI 239
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
AM+KFG+ LPY YFGGVS L+ Q+L++NGFP
Sbjct: 240 AMDKFGFRLPYAGYFGGVSGLSKAQFLRINGFP 272
>ref|NP_004766.2| beta-1,4-galactosyltransferase 6 [Homo sapiens].
Length = 382
Score = 149 bits (377), Expect = 3e-36
Identities = 68/153 (44%), Positives = 95/153 (62%)
Frame = +3
Query: 549 EIMERNPRVEPGGRYRPAGCEARSRTAIIVPHRAREQXXXXXXXXXXXXXQRQQLAYGIY 728
++ ++ +EPGG +RP C+ R + A+++P R R + Q+Q+L + Y
Sbjct: 133 QLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFY 192
Query: 729 VIHQAGNGTFNRAKLLNVGVREALRDEEWDCLFLHDVDLLPENDHNLYVCDPRGPRHVAV 908
VI Q G FNRA L NVG +EA++D WDC+ HDVD LPEND N Y C PRH A
Sbjct: 193 VIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHLPENDRNYYGCGEM-PRHFAA 251
Query: 909 AMNKFGYSLPYPQYFGGVSALTPDQYLKMNGFP 1007
++K+ Y LPY ++FGGVS LT +Q+ K+NGFP
Sbjct: 252 KLDKYMYILPYKEFFGGVSGLTVEQFRKINGFP 284
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,151,360
Number of extensions: 1194568
Number of successful extensions: 4939
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4876
Number of HSP's successfully gapped: 12
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008059
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 805 0.0
Sscrofa_Chr04 549 e-153
>Sscrofa_Chr14
|| Length = 153851969
Score = 805 bits (406), Expect = 0.0
Identities = 841/979 (85%), Gaps = 24/979 (2%)
Strand = Plus / Minus
Query: 55 ggcagtgacgacgggaagcagaaagccagctggtcccaagatcgctgttggagtgctgga 114
|||||||| || ||||||||||| ||||| || | || ||| ||||||||| |||||||
Sbjct: 20895451 ggcagtgatgatgggaagcagaaggccaggtgacctcaggattgctgttggaatgctgga 20895392
Query: 115 tggagcctttctctgtcctctgtgatatttccaattttatataatgcctcacatctctgc 174
| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 20895391 tagagcctttctctgtcctctgtgacatttccagttttatataatgcctcacatctctgc 20895332
Query: 175 tcccccgggaccccctggagccccaatgatcccgaagaagaccgcttgaacctagacctc 234
|| || |||| |||||||||||| |||||| |||||||| |||||||||| ||||||
Sbjct: 20895331 tcacctgggaatccctggagcccccatgatcttaaagaagacagcttgaacctggacctc 20895272
Query: 235 aacccaggatgttgcggaggctgctggagcggccctgcacactggccctgcttgtgggct 294
| |||||| ||||||||| ||||||| ||||||| |||||||||| |||||||||||
Sbjct: 20895271 cccgcaggatattgcggaggtggctggagtggccctgaacactggcccagcttgtgggct 20895212
Query: 295 ccca---gctggccgtcatgatgtacctgtcgct-gggaggcttccgaagcctgagtgcc 350
|||| |||||| ||||||| ||||||||| || ||| |||||| || ||| ||||||
Sbjct: 20895211 cccactggctggctgtcatgaggtacctgtctctgggggggcttctaaatcctcagtgcc 20895152
Query: 351 ctatttggccgagagcaggagccaacttttgactattctcatccccatgatgtctacagt 410
||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||| |
Sbjct: 20895151 ctatttggctaagagcaggagctgacttttgacttttctcatccccatgatgtccacaat 20895092
Query: 411 aacctcagtcacctgcatggggcccctgttgccccagggggccctccagcacctcaaggt 470
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 20895091 aacctcagtcacctgcatggggcccctgttgccccatggggccctccagctcctcaaggt 20895032
Query: 471 ctgccctactgtccagaacgatcccctctcttagtgggtcccgtgtccgtgtcctttagc 530
|| | ||||||||||| | |||| ||| |||| ||||||| || |||||||||||
Sbjct: 20895031 ctacgctactgtccagcatgatctcctatcttggtgggtc------ccatgtcctttagc 20894978
Query: 531 ccagtgccgtcgctggcagagattatggagaggaatccccgggtggaaccagggggccgg 590
|||| |||||| |||||||| ||| |||||||||||||| ||||| |||| |||||| |
Sbjct: 20894977 ccagagccgtcactggcagatattgtggagaggaatccctgggtgaaaccggggggctag 20894918
Query: 591 taccgccctgcagggtgtgaggcccggtcccgaacagccataattgtgccccaccgtgcc 650
|||| || |||||||| |||| || |||||| ||||||||| ||||||||||||| || |
Sbjct: 20894917 tacctccttgcagggtttgagtcctggtcccaaacagccatcattgtgccccacc-tggc 20894859
Query: 651 cgagagca---gcacctgcgcctg---ctgctgtaccacctgcacccgttcctgcagcgt 704
||||||| | | | | |||| ||||| ||||||||||||| ||||||||||| |
Sbjct: 20894858 tgagagcaccgggagccccacctgtacctgctataccacctgcacctgttcctgcagcat 20894799
Query: 705 cagcagcttgcttatggcatctatgtcatccaccaggctggaaatggaacatttaatagg 764
| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 20894798 ctacagcttacttatggcatctatgtcatccaccaggatggaaatggaacatttaagagt 20894739
Query: 765 gcaaagctgctgaatgttggggtgcgggaggccctgcgtgatgaagaatgggactgcctg 824
|||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||
Sbjct: 20894738 gcaaagctgctgaatgttggcgtgtgggaggccctgtttgatgaagaatg-----gcctg 20894684
Query: 825 ttcttgcatgatgtggacctactgccagagaatgaccacaacctgtatgtgtgcgacccc 884
|||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||
Sbjct: 20894683 ttcttgcatgatgtggacctcctgccagagaatggccacaacctgtatatgtgcga-ccc 20894625
Query: 885 cgaggaccccgacatgttgctgttgccatgaacaagtttggatacagcctcccgtacccc 944
| || | | ||||||| | |||||||||||| ||||| ||||||||||| ||||||
Sbjct: 20894624 agtagaatctggcatgttggtattgccatgaacagatttgggtacagcctcccttacccc 20894565
Query: 945 cagtactttggaggggtctcggcgctcactcctgaccagtacctgaagatgaatggcttc 1004
||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct: 20894564 cagtactttagaggggtctcagcgcacactcctgaccagtacctgaagacgaatggcttc 20894505
Query: 1005 cccattga-tactggggct 1022
|||| ||| ||||||||||
Sbjct: 20894504 cccagtgagtactggggct 20894486
>Sscrofa_Chr04
|| Length = 143465943
Score = 549 bits (277), Expect = e-153
Identities = 277/277 (100%)
Strand = Plus / Plus
Query: 228 agacctcaacccaggatgttgcggaggctgctggagcggccctgcacactggccctgctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97136571 agacctcaacccaggatgttgcggaggctgctggagcggccctgcacactggccctgctt 97136630
Query: 288 gtgggctcccagctggccgtcatgatgtacctgtcgctgggaggcttccgaagcctgagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97136631 gtgggctcccagctggccgtcatgatgtacctgtcgctgggaggcttccgaagcctgagt 97136690
Query: 348 gccctatttggccgagagcaggagccaacttttgactattctcatccccatgatgtctac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97136691 gccctatttggccgagagcaggagccaacttttgactattctcatccccatgatgtctac 97136750
Query: 408 agtaacctcagtcacctgcatggggcccctgttgccccagggggccctccagcacctcaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97136751 agtaacctcagtcacctgcatggggcccctgttgccccagggggccctccagcacctcaa 97136810
Query: 468 ggtctgccctactgtccagaacgatcccctctcttag 504
|||||||||||||||||||||||||||||||||||||
Sbjct: 97136811 ggtctgccctactgtccagaacgatcccctctcttag 97136847
Score = 474 bits (239), Expect = e-131
Identities = 239/239 (100%)
Strand = Plus / Plus
Query: 503 agtgggtcccgtgtccgtgtcctttagcccagtgccgtcgctggcagagattatggagag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97137394 agtgggtcccgtgtccgtgtcctttagcccagtgccgtcgctggcagagattatggagag 97137453
Query: 563 gaatccccgggtggaaccagggggccggtaccgccctgcagggtgtgaggcccggtcccg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97137454 gaatccccgggtggaaccagggggccggtaccgccctgcagggtgtgaggcccggtcccg 97137513
Query: 623 aacagccataattgtgccccaccgtgcccgagagcagcacctgcgcctgctgctgtacca 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97137514 aacagccataattgtgccccaccgtgcccgagagcagcacctgcgcctgctgctgtacca 97137573
Query: 683 cctgcacccgttcctgcagcgtcagcagcttgcttatggcatctatgtcatccaccagg 741
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97137574 cctgcacccgttcctgcagcgtcagcagcttgcttatggcatctatgtcatccaccagg 97137632
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 737 ccaggctggaaatggaacatttaatagggcaaagctgctgaatgttggggtgcgggaggc 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97138483 ccaggctggaaatggaacatttaatagggcaaagctgctgaatgttggggtgcgggaggc 97138542
Query: 797 cctgcgtgatgaagaatgggactgcctgttcttgcatgatgtggacctactgccagagaa 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97138543 cctgcgtgatgaagaatgggactgcctgttcttgcatgatgtggacctactgccagagaa 97138602
Query: 857 tgaccacaacctgtatgtgtgcgacccccgaggaccccgacatgttgctgttgccatgaa 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97138603 tgaccacaacctgtatgtgtgcgacccccgaggaccccgacatgttgctgttgccatgaa 97138662
Query: 917 caagtttggatacag 931
|||||||||||||||
Sbjct: 97138663 caagtttggatacag 97138677
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 80 ccagctggtcccaagatcgctgttggagtgctggatggagcctttctctgtcctctgtga 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97136068 ccagctggtcccaagatcgctgttggagtgctggatggagcctttctctgtcctctgtga 97136127
Query: 140 tatttccaattttatataatgcctcacatctctgctcccccgggaccccctggagcccca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97136128 tatttccaattttatataatgcctcacatctctgctcccccgggaccccctggagcccca 97136187
Query: 200 atgatcccgaagaagaccgcttgaacctag 229
||||||||||||||||||||||||||||||
Sbjct: 97136188 atgatcccgaagaagaccgcttgaacctag 97136217
Score = 165 bits (83), Expect = 6e-38
Identities = 93/95 (97%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 929 cagcctcccgtacccccagtactttggaggggtctcggcgctcactcctgaccagtacct 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97138789 cagcctcccgtacccccagtactttggaggggtctcggcgctcactcctgaccagtacct 97138848
Query: 989 gaagatgaatggcttccccattg-atactggggct 1022
|||||||||||||||||||| || |||||||||||
Sbjct: 97138849 gaagatgaatggcttccccaatgaatactggggct 97138883
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 2 cgcagcgcccgcttccaagatggctccagcgattcttgcccggctgtcggggtggcagtg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97135164 cgcagcgcccgcttccaagatggctccagcgattcttgcccggctgtcggggtggcagtg 97135223
Query: 62 acgacgggaagcagaaagccag 83
||||||||||||||||||||||
Sbjct: 97135224 acgacgggaagcagaaagccag 97135245
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,375,061
Number of extensions: 169
Number of successful extensions: 169
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 10
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)