Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008066
(1514 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039534.1| phosphatidylcholine-sterol acyltransferase [... 698 0.0
Alignment gi|NP_776985.2| group XV phospholipase A2 [Bos taurus]. 344 1e-94
>ref|NP_001039534.1| phosphatidylcholine-sterol acyltransferase [Bos taurus].
Length = 440
Score = 698 bits (1802), Expect = 0.0
Identities = 351/452 (77%), Positives = 366/452 (80%), Gaps = 2/452 (0%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MGLPGSPRQWV NVLFPPHTTPKAELSNHTRPVILVPGCLGNQL
Sbjct: 1 MGLPGSPRQWVLLLLGLLLPPAAPFWLFNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 60
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKP VVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNR+SGRVSNAPGV
Sbjct: 61 EAKLDKPSVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGRVSNAPGV 120
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 596
+IRVPGFGKTYSVEYLD+SKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY
Sbjct: 121 QIRVPGFGKTYSVEYLDSSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 180
Query: 597 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 776
YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQ WKDRFIDGFISLGAPWGG+
Sbjct: 181 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQTWKDRFIDGFISLGAPWGGT 240
Query: 777 IKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSH 956
IKPMLVLASGDNQGIP+MSSIKLKEEQRMTTTSPWM P+ WPEDHVFISTPS NYTS
Sbjct: 241 IKPMLVLASGDNQGIPVMSSIKLKEEQRMTTTSPWMLPARQTWPEDHVFISTPSINYTSR 300
Query: 957 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGT 1136
D QRFF DLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYG+GLPTP TYI+DHG P
Sbjct: 301 DMQRFFTDLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGIGLPTPSTYIYDHGFPYTDP 360
Query: 1137 LWMCSMRMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFI 1316
+ + T VATR+T+ LC + PVH L PGTQH FS N I
Sbjct: 361 VDVLYEDGDDT-VATRSTE-LCARWQGRQKQPVHLLPL-PGTQHLNMVFS---NQTLEHI 414
Query: 1317 AHSWLGHLQKNT--PPQYSPKHPHQRGTPFPP 1406
LG + +T PP SPK P PP
Sbjct: 415 NAILLGTYRNSTAVPPTASPK-------PMPP 439
>ref|NP_776985.2| group XV phospholipase A2 [Bos taurus].
Length = 407
Score = 344 bits (883), Expect = 1e-94
Identities = 149/307 (48%), Positives = 221/307 (71%), Gaps = 2/307 (0%)
Frame = +3
Query: 198 PVILVPGCLGNQLEAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVY 377
PV+LVPG +GNQLEAKLDKP VV+++C ++T+ +FT+WL+L + LP+ +DCWIDN R++Y
Sbjct: 34 PVVLVPGDMGNQLEAKLDKPSVVHYVCSKRTDHYFTLWLNLELLLPVIIDCWIDNVRLIY 93
Query: 378 NRTSGRVSNAPGVEIRVPGFGKTYSVEYLDNSK--LAGYMHTLVQNLVNNGYVRDETVRA 551
N+TS GV++RVPGFG T+S+E+LD SK + Y+HT+V++LV+ GY R + VR
Sbjct: 94 NQTSHTTQFPEGVDVRVPGFGDTFSMEFLDPSKSSVGSYLHTMVESLVSWGYERGKDVRG 153
Query: 552 APYDWRLEPSQQEEYYLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDR 731
APYDWR P++ Y+L L ++EEM+ YG PV L+ HS+G +++LYFL QPQ WKD+
Sbjct: 154 APYDWRRAPNENGPYFLALRKMIEEMYQLYGGPVVLVAHSMGNMYMLYFLQHQPQDWKDK 213
Query: 732 FIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPE 911
+I F++LG PWGG K + VLASGDN IP++ S+K++ +QR ++ W+ P S+ W
Sbjct: 214 YIRAFVALGPPWGGVPKTLRVLASGDNNRIPVIRSLKIRAQQRSAVSTTWLLPYSYTWSP 273
Query: 912 DHVFISTPSFNYTSHDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPT 1091
VF+ TP NYT D+++FF D+ F++GW M ++ L+ PGV ++CLYG G+PT
Sbjct: 274 QKVFVRTPKANYTLQDYRQFFQDIGFKDGWSMRQETEGLVEATVPPGVRLHCLYGTGVPT 333
Query: 1092 PRTYIFD 1112
P ++ ++
Sbjct: 334 PESFDYE 340
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,577,913
Number of extensions: 1948929
Number of successful extensions: 6134
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6122
Number of HSP's successfully gapped: 2
Length of query: 504
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,140,958
Effective search space: 5613960326
Effective search space used: 5613960326
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008066
(1514 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851673.1| PREDICTED: similar to Phosphatidylcholine-stero... 690 0.0
Alignment gi|XP_864241.1| PREDICTED: similar to Phosphatidylcholine-stero... 606 e-173
Alignment gi|XP_864212.1| PREDICTED: similar to Phosphatidylcholine-stero... 605 e-173
Alignment gi|XP_864264.1| PREDICTED: similar to Phosphatidylcholine-stero... 573 e-163
Alignment gi|NP_001002940.1| group XV phospholipase A2 [Canis lupus famil... 359 4e-99
Alignment gi|XP_864187.1| PREDICTED: similar to Phosphatidylcholine-stero... 317 3e-86
>ref|XP_851673.1| PREDICTED: similar to Phosphatidylcholine-sterol acyltransferase
precursor (Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase) isoform 2
[Canis familiaris].
Length = 438
Score = 690 bits (1781), Expect = 0.0
Identities = 352/452 (77%), Positives = 365/452 (80%), Gaps = 2/452 (0%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MG PGSP QW NVLFPPHTTPKAELSNHTRPVILVPGCLGNQL
Sbjct: 1 MGPPGSPWQW--GLLLLLLPPATPFWLFNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 58
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTE+FFTIWLDLNMFLPLGVDCWIDNTRVVYNR+SGRVSNAPGV
Sbjct: 59 EAKLDKPDVVNWMCYRKTEEFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGRVSNAPGV 118
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 596
EIRVPGFGKTYSVEYLDN+KLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY
Sbjct: 119 EIRVPGFGKTYSVEYLDNNKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 178
Query: 597 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 776
Y KLAGLVEEMHA YGKPVFLIGHSLGCLHLLYFLLRQPQAWKD FIDGFISLGAPWGGS
Sbjct: 179 YRKLAGLVEEMHAAYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDHFIDGFISLGAPWGGS 238
Query: 777 IKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSH 956
IKPMLVLASGDNQGIPIMSSIKL+EEQR+TTTSPWMFPS WPEDHVFISTPSFNYT
Sbjct: 239 IKPMLVLASGDNQGIPIMSSIKLREEQRITTTSPWMFPSREAWPEDHVFISTPSFNYTGR 298
Query: 957 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGT 1136
DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHG P
Sbjct: 299 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGFPYTDP 358
Query: 1137 LWMCSMRMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFI 1316
+ + T VATR+T+ LC ++ PVH L GT+H FS N I
Sbjct: 359 VGVLYEDGDDT-VATRSTE-LCARWQSRQPQPVHLLPL-HGTEHLNMVFS---NQTLEHI 412
Query: 1317 AHSWLGHLQKNT--PPQYSPKHPHQRGTPFPP 1406
LG + NT PP SP P PP
Sbjct: 413 NAILLGTYRHNTPVPPAASP-------GPLPP 437
>ref|XP_864241.1| PREDICTED: similar to Phosphatidylcholine-sterol acyltransferase
precursor (Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase) isoform 5
[Canis familiaris].
Length = 405
Score = 606 bits (1563), Expect = e-173
Identities = 320/452 (70%), Positives = 333/452 (73%), Gaps = 2/452 (0%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MG PGSP QW NVLFPPHTTPKAELSNHTRPVILVPGCLGNQL
Sbjct: 1 MGPPGSPWQW--GLLLLLLPPATPFWLFNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 58
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTE+FFTIWLDLNMFLPLGVDCWIDNTRVVYNR+SGRVSNAPGV
Sbjct: 59 EAKLDKPDVVNWMCYRKTEEFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGRVSNAPGV 118
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 596
EIRVPGFGKTYSVEYLDN+KLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY
Sbjct: 119 EIRVPGFGKTYSVEYLDNNKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 178
Query: 597 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 776
Y KLAGLVEEMHA YGKPVFLIGHSLGCLHLLYFLLR
Sbjct: 179 YRKLAGLVEEMHAAYGKPVFLIGHSLGCLHLLYFLLR----------------------- 215
Query: 777 IKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSH 956
DNQGIPIMSSIKL+EEQR+TTTSPWMFPS WPEDHVFISTPSFNYT
Sbjct: 216 ----------DNQGIPIMSSIKLREEQRITTTSPWMFPSREAWPEDHVFISTPSFNYTGR 265
Query: 957 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGT 1136
DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHG P
Sbjct: 266 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGFPYTDP 325
Query: 1137 LWMCSMRMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFI 1316
+ + T VATR+T+ LC ++ PVH L GT+H FS N I
Sbjct: 326 VGVLYEDGDDT-VATRSTE-LCARWQSRQPQPVHLLPL-HGTEHLNMVFS---NQTLEHI 379
Query: 1317 AHSWLGHLQKNT--PPQYSPKHPHQRGTPFPP 1406
LG + NT PP SP P PP
Sbjct: 380 NAILLGTYRHNTPVPPAASP-------GPLPP 404
>ref|XP_864212.1| PREDICTED: similar to Phosphatidylcholine-sterol acyltransferase
precursor (Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase) isoform 4
[Canis familiaris].
Length = 403
Score = 605 bits (1560), Expect = e-173
Identities = 318/452 (70%), Positives = 330/452 (73%), Gaps = 2/452 (0%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MG PGSP QW NVLFPPHTTPKAELSNHTRPVILVPGCLGNQL
Sbjct: 1 MGPPGSPWQW--GLLLLLLPPATPFWLFNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 58
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTE+FFTIWLDLNMFLPLGVDCWIDNTRVVYNR+SGRVSNAPGV
Sbjct: 59 EAKLDKPDVVNWMCYRKTEEFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGRVSNAPGV 118
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 596
EIRVPGFGKTYSVEYLDN+KLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY
Sbjct: 119 EIRVPGFGKTYSVEYLDNNKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 178
Query: 597 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 776
Y KLAGLVEEMHA YGKPVFLIGHSLGCLHLLYFLLRQPQAWKD FIDG
Sbjct: 179 YRKLAGLVEEMHAAYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDHFIDG----------- 227
Query: 777 IKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSH 956
EEQR+TTTSPWMFPS WPEDHVFISTPSFNYT
Sbjct: 228 ------------------------EEQRITTTSPWMFPSREAWPEDHVFISTPSFNYTGR 263
Query: 957 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGT 1136
DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHG P
Sbjct: 264 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGFPYTDP 323
Query: 1137 LWMCSMRMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFI 1316
+ + T VATR+T+ LC ++ PVH L GT+H FS N I
Sbjct: 324 VGVLYEDGDDT-VATRSTE-LCARWQSRQPQPVHLLPL-HGTEHLNMVFS---NQTLEHI 377
Query: 1317 AHSWLGHLQKNT--PPQYSPKHPHQRGTPFPP 1406
LG + NT PP SP P PP
Sbjct: 378 NAILLGTYRHNTPVPPAASP-------GPLPP 402
>ref|XP_864264.1| PREDICTED: similar to Phosphatidylcholine-sterol acyltransferase
precursor (Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase) isoform 6
[Canis familiaris].
Length = 390
Score = 573 bits (1477), Expect = e-163
Identities = 306/452 (67%), Positives = 318/452 (70%), Gaps = 2/452 (0%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MG PGSP QW NVLFPPHTTPKAELSNHTRPVILVPGCLGNQL
Sbjct: 1 MGPPGSPWQW--GLLLLLLPPATPFWLFNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 58
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTE+FFTIWLDLNMFLPLGVDCWIDNTRVVYNR+SGRVSNAPGV
Sbjct: 59 EAKLDKPDVVNWMCYRKTEEFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGRVSNAPGV 118
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 596
EIRVPGFGKTYSVEYLDN+KLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY
Sbjct: 119 EIRVPGFGKTYSVEYLDNNKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 178
Query: 597 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 776
Y KLAGLVEEMHA YGKPVFLIGHSLGCLHLLYFLL
Sbjct: 179 YRKLAGLVEEMHAAYGKPVFLIGHSLGCLHLLYFLL------------------------ 214
Query: 777 IKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSH 956
EEQR+TTTSPWMFPS WPEDHVFISTPSFNYT
Sbjct: 215 ------------------------EEQRITTTSPWMFPSREAWPEDHVFISTPSFNYTGR 250
Query: 957 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGT 1136
DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHG P
Sbjct: 251 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGFPYTDP 310
Query: 1137 LWMCSMRMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFI 1316
+ + T VATR+T+ LC ++ PVH L GT+H FS N I
Sbjct: 311 VGVLYEDGDDT-VATRSTE-LCARWQSRQPQPVHLLPL-HGTEHLNMVFS---NQTLEHI 364
Query: 1317 AHSWLGHLQKNT--PPQYSPKHPHQRGTPFPP 1406
LG + NT PP SP P PP
Sbjct: 365 NAILLGTYRHNTPVPPAASP-------GPLPP 389
>ref|NP_001002940.1| group XV phospholipase A2 [Canis lupus familiaris].
Length = 408
Score = 359 bits (921), Expect = 4e-99
Identities = 157/315 (49%), Positives = 228/315 (72%), Gaps = 2/315 (0%)
Frame = +3
Query: 174 AELSNHTRPVILVPGCLGNQLEAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCW 353
A L+ PV+LVPG LGNQLEAKLDKP VV+++C ++TE +FT+WL+L + LP+ +DCW
Sbjct: 27 ALLAGRRPPVVLVPGDLGNQLEAKLDKPTVVHYLCSKRTESYFTLWLNLELLLPVIIDCW 86
Query: 354 IDNTRVVYNRTSGRVSNAPGVEIRVPGFGKTYSVEYLDNSK--LAGYMHTLVQNLVNNGY 527
IDN R+VYNRTS GV++RVPGFGKT+S+E+LD SK + Y HT+V++LV+ GY
Sbjct: 87 IDNIRLVYNRTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVDWGY 146
Query: 528 VRDETVRAAPYDWRLEPSQQEEYYLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLR 707
+R E VR APYDWR P++ Y+L L ++EEM+ YG PV L+ HS+G ++ LYFL R
Sbjct: 147 IRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLYGGPVVLVAHSMGNMYTLYFLQR 206
Query: 708 QPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMF 887
QPQAWK+++I F++LGAPWGG K + VLASGDN IP++ +K++E+QR ++ W+
Sbjct: 207 QPQAWKNKYIQAFVALGAPWGGVAKTLRVLASGDNNRIPVIRPLKIREQQRSAVSTSWLL 266
Query: 888 PSSHVWPEDHVFISTPSFNYTSHDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYC 1067
P ++ W + +F+ TP+ NYT D+ +FF D+ F++GW M + L+ + PGV ++C
Sbjct: 267 PYNYTWSPEKIFVHTPTANYTLRDYHQFFQDIGFKDGWLMRQDTEGLVEAMVPPGVPLHC 326
Query: 1068 LYGVGLPTPRTYIFD 1112
LYG G+PTP ++ ++
Sbjct: 327 LYGTGVPTPDSFYYE 341
>ref|XP_864187.1| PREDICTED: similar to Phosphatidylcholine-sterol acyltransferase
precursor (Lecithin-cholesterol acyltransferase)
(Phospholipid-cholesterol acyltransferase) isoform 3
[Canis familiaris].
Length = 363
Score = 317 bits (811), Expect = 3e-86
Identities = 152/178 (85%), Positives = 156/178 (87%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MG PGSP QW NVLFPPHTTPKAELSNHTRPVILVPGCLGNQL
Sbjct: 1 MGPPGSPWQW--GLLLLLLPPATPFWLFNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 58
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTE+FFTIWLDLNMFLPLGVDCWIDNTRVVYNR+SGRVSNAPGV
Sbjct: 59 EAKLDKPDVVNWMCYRKTEEFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGRVSNAPGV 118
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQE 590
EIRVPGFGKTYSVEYLDN+KLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPS +
Sbjct: 119 EIRVPGFGKTYSVEYLDNNKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSDNQ 176
Score = 231 bits (588), Expect = 2e-60
Identities = 129/206 (62%), Positives = 139/206 (67%), Gaps = 2/206 (0%)
Frame = +3
Query: 795 LASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSHDFQRFF 974
L DNQGIPIMSSIKL+EEQR+TTTSPWMFPS WPEDHVFISTPSFNYT DFQRFF
Sbjct: 170 LEPSDNQGIPIMSSIKLREEQRITTTSPWMFPSREAWPEDHVFISTPSFNYTGRDFQRFF 229
Query: 975 ADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGTLWMCSM 1154
ADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHG P + +
Sbjct: 230 ADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGFPYTDPVGVLYE 289
Query: 1155 RMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFIAHSWLG 1334
T VATR+T+ LC ++ PVH L GT+H FS N I LG
Sbjct: 290 DGDDT-VATRSTE-LCARWQSRQPQPVHLLPL-HGTEHLNMVFS---NQTLEHINAILLG 343
Query: 1335 HLQKNT--PPQYSPKHPHQRGTPFPP 1406
+ NT PP SP P PP
Sbjct: 344 TYRHNTPVPPAASP-------GPLPP 362
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 65,700,704
Number of extensions: 1933120
Number of successful extensions: 6392
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6365
Number of HSP's successfully gapped: 9
Length of query: 504
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 397
Effective length of database: 15,307,552
Effective search space: 6077098144
Effective search space used: 6077098144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008066
(1514 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158328.1| phosphatidylcholine-sterol acyltransferase [... 707 0.0
>ref|NP_001158328.1| phosphatidylcholine-sterol acyltransferase [Sus scrofa].
Length = 472
Score = 707 bits (1825), Expect = 0.0
Identities = 362/465 (77%), Positives = 369/465 (79%), Gaps = 32/465 (6%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MGLPGSPRQWV NVLFPPHTTPKAELSNHTR VILVPGCLGNQL
Sbjct: 1 MGLPGSPRQWVLLLLGLLLPPAAPFWLLNVLFPPHTTPKAELSNHTRLVILVPGCLGNQL 60
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV
Sbjct: 61 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 120
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPS----- 581
EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPS
Sbjct: 121 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSYMHTL 180
Query: 582 ---------------------------QQEEYYLKLAGLVEEMHATYGKPVFLIGHSLGC 680
QQEEYYLKLAGLVEEMHATYGKPVFLIGHSLGC
Sbjct: 181 VQNLVNNGYVRDETVRAAPYDWRLEPSQQEEYYLKLAGLVEEMHATYGKPVFLIGHSLGC 240
Query: 681 LHLLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQR 860
LHLLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQR
Sbjct: 241 LHLLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQR 300
Query: 861 MTTTSPWMFPSSHVWPEDHVFISTPSFNYTSHDFQRFFADLHFEEGWYMWLQSRDLLAGL 1040
MTTTSPWMFPSSHVWPEDHVFISTPSFNYTSHDFQRFFADLHFEEGWYMWLQSRDLLAGL
Sbjct: 301 MTTTSPWMFPSSHVWPEDHVFISTPSFNYTSHDFQRFFADLHFEEGWYMWLQSRDLLAGL 360
Query: 1041 PAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGTLWMCSMRMVMTLVATRNTQILCPPGRAA 1220
PAPGVEVYCLYGVGLPTPRTYIFDHG P + + T VATR+T+ LC +
Sbjct: 361 PAPGVEVYCLYGVGLPTPRTYIFDHGFPYTDPVDVLYEDGDDT-VATRSTE-LCARWQGR 418
Query: 1221 NSHPVHPAALCPGTQHPQNGFSVTKNPGTTFIAHSWLGHLQKNTP 1355
PVH L PGTQH FS N I LG + +TP
Sbjct: 419 QQQPVHLLPL-PGTQHLNMVFS---NQTLEHINAILLGTYRNSTP 459
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,608,069
Number of extensions: 1339705
Number of successful extensions: 4057
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4051
Number of HSP's successfully gapped: 2
Length of query: 504
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,779,541
Effective search space: 3520595941
Effective search space used: 3520595941
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008066
(1514 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032516.2| phosphatidylcholine-sterol acyltransferase prec... 633 0.0
Alignment gi|NP_598553.1| group XV phospholipase A2 precursor [Mus muscul... 365 e-101
>ref|NP_032516.2| phosphatidylcholine-sterol acyltransferase precursor [Mus musculus].
Length = 438
Score = 633 bits (1633), Expect = 0.0
Identities = 315/441 (71%), Positives = 345/441 (78%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MGLPGSP Q V NVLFPPHTTPKAELSNHTRPVILVPGCLGN+L
Sbjct: 1 MGLPGSPWQRVLLLLGLLLPPATPFWLLNVLFPPHTTPKAELSNHTRPVILVPGCLGNRL 60
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTEDFFTIWLD N+FLPLGVDCWIDNTR+VYN +SGRVSNAPGV
Sbjct: 61 EAKLDKPDVVNWMCYRKTEDFFTIWLDFNLFLPLGVDCWIDNTRIVYNHSSGRVSNAPGV 120
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 596
+IRVPGFGKT SVEY+D++KLAGY+HTLVQNLVNNGYVRDETVRAAPYDWRL P QQ+EY
Sbjct: 121 QIRVPGFGKTESVEYVDDNKLAGYLHTLVQNLVNNGYVRDETVRAAPYDWRLAPHQQDEY 180
Query: 597 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 776
Y KLAGLVEEM+A YGKPVFLIGHSLGCLH+L+FLLRQPQ+WKD FIDGFISLGAPWGGS
Sbjct: 181 YKKLAGLVEEMYAAYGKPVFLIGHSLGCLHVLHFLLRQPQSWKDHFIDGFISLGAPWGGS 240
Query: 777 IKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSH 956
IK M +LASGDNQGIPI+S+IKLKEEQR+TTTSPWM P+ HVWPEDHVFISTP+FNYT
Sbjct: 241 IKAMRILASGDNQGIPILSNIKLKEEQRITTTSPWMLPAPHVWPEDHVFISTPNFNYTVQ 300
Query: 957 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGT 1136
DF+RFF DLHFEEGW+M+LQSRDLL LPAPGVEVYCLYGVG PTP TYI+DH P
Sbjct: 301 DFERFFTDLHFEEGWHMFLQSRDLLERLPAPGVEVYCLYGVGRPTPHTYIYDHNFPYKDP 360
Query: 1137 LWMCSMRMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFI 1316
+ VATR+T+ LC + S PVH + T H FS N I
Sbjct: 361 V-AALYEDGDDTVATRSTE-LCGQWQGRQSQPVHLLPM-NETDHLNMVFS---NKTLEHI 414
Query: 1317 AHSWLGHLQKNTPPQYSPKHP 1379
LG + P SP P
Sbjct: 415 NAILLGAYRTPKSPAASPSPP 435
>ref|NP_598553.1| group XV phospholipase A2 precursor [Mus musculus].
Length = 412
Score = 365 bits (938), Expect = e-101
Identities = 159/307 (51%), Positives = 225/307 (73%), Gaps = 2/307 (0%)
Frame = +3
Query: 198 PVILVPGCLGNQLEAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVY 377
PV+LVPG LGNQLEAKLDKP VV+++C +KT+ +FT+WL+L + LP+ +DCWIDN R+VY
Sbjct: 39 PVVLVPGDLGNQLEAKLDKPKVVHYLCSKKTDSYFTLWLNLELLLPVIIDCWIDNIRLVY 98
Query: 378 NRTSGRVSNAPGVEIRVPGFGKTYSVEYLDNSK--LAGYMHTLVQNLVNNGYVRDETVRA 551
NRTS GV++RVPGFG+T+S+E+LD SK + Y +T+V++LV GY R E VR
Sbjct: 99 NRTSRATQFPDGVDVRVPGFGETFSMEFLDPSKRNVGSYFYTMVESLVGWGYTRGEDVRG 158
Query: 552 APYDWRLEPSQQEEYYLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDR 731
APYDWR P++ Y+L L ++EEM+ YG PV L+ HS+G +++LYFL RQPQ WKD+
Sbjct: 159 APYDWRRAPNENGPYFLALREMIEEMYQMYGGPVVLVAHSMGNVYMLYFLQRQPQVWKDK 218
Query: 732 FIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPE 911
+I F+SLGAPWGG K + VLASGDN IP++ +K++E+QR ++ W+ P +H W
Sbjct: 219 YIHAFVSLGAPWGGVAKTLRVLASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNHTWSH 278
Query: 912 DHVFISTPSFNYTSHDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPT 1091
+ VF+ TP+ NYT D+ RFF D+ FE+GW+M + L+ + PGVE++CLYG G+PT
Sbjct: 279 EKVFVYTPTTNYTLRDYHRFFRDIGFEDGWFMRQDTEGLVEAMTPPGVELHCLYGTGVPT 338
Query: 1092 PRTYIFD 1112
P ++ ++
Sbjct: 339 PNSFYYE 345
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 54,348,231
Number of extensions: 1576794
Number of successful extensions: 5165
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5136
Number of HSP's successfully gapped: 2
Length of query: 504
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 398
Effective length of database: 12,433,743
Effective search space: 4948629714
Effective search space used: 4948629714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008066
(1514 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000220.1| phosphatidylcholine-sterol acyltransferase prec... 687 0.0
Alignment gi|NP_036452.1| group XV phospholipase A2 precursor [Homo sapie... 363 e-100
>ref|NP_000220.1| phosphatidylcholine-sterol acyltransferase precursor [Homo sapiens].
Length = 440
Score = 687 bits (1772), Expect = 0.0
Identities = 347/443 (78%), Positives = 361/443 (81%), Gaps = 2/443 (0%)
Frame = +3
Query: 57 MGLPGSPRQWVXXXXXXXXXXXXXXXXXNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 236
MG PGSP QWV NVLFPPHTTPKAELSNHTRPVILVPGCLGNQL
Sbjct: 1 MGPPGSPWQWVTLLLGLLLPPAAPFWLLNVLFPPHTTPKAELSNHTRPVILVPGCLGNQL 60
Query: 237 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRTSGRVSNAPGV 416
EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNR+SG VSNAPGV
Sbjct: 61 EAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGLVSNAPGV 120
Query: 417 EIRVPGFGKTYSVEYLDNSKLAGYMHTLVQNLVNNGYVRDETVRAAPYDWRLEPSQQEEY 596
+IRVPGFGKTYSVEYLD+SKLAGY+HTLVQNLVNNGYVRDETVRAAPYDWRLEP QQEEY
Sbjct: 121 QIRVPGFGKTYSVEYLDSSKLAGYLHTLVQNLVNNGYVRDETVRAAPYDWRLEPGQQEEY 180
Query: 597 YLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 776
Y KLAGLVEEMHA YGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS
Sbjct: 181 YRKLAGLVEEMHAAYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGS 240
Query: 777 IKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPEDHVFISTPSFNYTSH 956
IKPMLVLASGDNQGIPIMSSIKLKEEQR+TTTSPWMFPS WPEDHVFISTPSFNYT
Sbjct: 241 IKPMLVLASGDNQGIPIMSSIKLKEEQRITTTSPWMFPSRMAWPEDHVFISTPSFNYTGR 300
Query: 957 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIFDHGLPLHGT 1136
DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYI+DHG P
Sbjct: 301 DFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIYDHGFPYTDP 360
Query: 1137 LWMCSMRMVMTLVATRNTQILCPPGRAANSHPVHPAALCPGTQHPQNGFSVTKNPGTTFI 1316
+ + T VATR+T+ LC + PVH L G QH FS N I
Sbjct: 361 VGVLYEDGDDT-VATRSTE-LCGLWQGRQPQPVHLLPL-HGIQHLNMVFS---NLTLEHI 414
Query: 1317 AHSWLGHLQKNTP--PQYSPKHP 1379
LG ++ P P SP+ P
Sbjct: 415 NAILLGAYRQGPPASPTASPEPP 437
>ref|NP_036452.1| group XV phospholipase A2 precursor [Homo sapiens].
Length = 412
Score = 363 bits (933), Expect = e-100
Identities = 160/307 (52%), Positives = 224/307 (72%), Gaps = 2/307 (0%)
Frame = +3
Query: 198 PVILVPGCLGNQLEAKLDKPDVVNWMCYRKTEDFFTIWLDLNMFLPLGVDCWIDNTRVVY 377
PV+LVPG LGNQLEAKLDKP VV+++C +KTE +FTIWL+L + LP+ +DCWIDN R+VY
Sbjct: 39 PVVLVPGDLGNQLEAKLDKPTVVHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVY 98
Query: 378 NRTSGRVSNAPGVEIRVPGFGKTYSVEYLDNSK--LAGYMHTLVQNLVNNGYVRDETVRA 551
N+TS GV++RVPGFGKT+S+E+LD SK + Y HT+V++LV GY R E VR
Sbjct: 99 NKTSRATQFPDGVDVRVPGFGKTFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGEDVRG 158
Query: 552 APYDWRLEPSQQEEYYLKLAGLVEEMHATYGKPVFLIGHSLGCLHLLYFLLRQPQAWKDR 731
APYDWR P++ Y+L L ++EEM+ YG PV L+ HS+G ++ LYFL RQPQAWKD+
Sbjct: 159 APYDWRRAPNENGPYFLALREMIEEMYQLYGGPVVLVAHSMGNMYTLYFLQRQPQAWKDK 218
Query: 732 FIDGFISLGAPWGGSIKPMLVLASGDNQGIPIMSSIKLKEEQRMTTTSPWMFPSSHVWPE 911
+I F+SLGAPWGG K + VLASGDN IP++ +K++E+QR ++ W+ P ++ W
Sbjct: 219 YIRAFVSLGAPWGGVAKTLRVLASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNYTWSP 278
Query: 912 DHVFISTPSFNYTSHDFQRFFADLHFEEGWYMWLQSRDLLAGLPAPGVEVYCLYGVGLPT 1091
+ VF+ TP+ NYT D+++FF D+ FE+GW M + L+ PGV+++CLYG G+PT
Sbjct: 279 EKVFVQTPTINYTLRDYRKFFQDIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPT 338
Query: 1092 PRTYIFD 1112
P ++ ++
Sbjct: 339 PDSFYYE 345
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,433,594
Number of extensions: 1891534
Number of successful extensions: 6276
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6257
Number of HSP's successfully gapped: 2
Length of query: 504
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 397
Effective length of database: 14,770,016
Effective search space: 5863696352
Effective search space used: 5863696352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008066
(1514 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896204.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 603 e-169
>gb|GL896204.1| Sus scrofa unplaced genomic scaffold chrU_scaffold568
Length = 93355
Score = 603 bits (304), Expect = e-169
Identities = 307/308 (99%)
Strand = Plus / Minus
Query: 802 caggtgacaaccagggcatcccgatcatgtccagcatcaaactgaaagaggagcagcgca 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81653 caggtgacaaccagggcatcccgatcatgtccagcatcaaactgaaagaggagcagcgca 81594
Query: 862 tgacaacaacctccccctggatgtttccctccagccacgtgtggcccgaggaccatgtgt 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81593 tgacaacaacctccccctggatgtttccctccagccacgtgtggcccgaggaccatgtgt 81534
Query: 922 tcatttccacccccagcttcaactacacaagccatgacttccagcgcttctttgcagacc 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81533 tcatttccacccccagcttcaactacacaagccatgacttccagcgcttctttgcagacc 81474
Query: 982 tgcactttgaggaaggctggtacatgtggctacagtcacgtgacctgctggcaggcctcc 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81473 tgcactttgaggaaggctggtacatgtggctacagtcacgtgacctgctggcaggcctcc 81414
Query: 1042 cagcgcctggtgtggaagtatactgtctgtatggtgtggggctgcccacaccccgcacct 1101
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 81413 cagcgcctggtgtggaagtatactgtctgtatggtgtgggcctgcccacaccccgcacct 81354
Query: 1102 acatcttt 1109
||||||||
Sbjct: 81353 acatcttt 81346
Score = 446 bits (225), Expect = e-122
Identities = 228/229 (99%)
Strand = Plus / Minus
Query: 580 gccagcaggaagagtactacctaaagcttgctgggctggtggaagaaatgcatgctactt 639
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 82761 gccagcaggaagagtactacctgaagcttgctgggctggtggaagaaatgcatgctactt 82702
Query: 640 atggaaagccggtcttcctcattgggcacagccttggctgcctacacttgctctatttct 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82701 atggaaagccggtcttcctcattgggcacagccttggctgcctacacttgctctatttct 82642
Query: 700 tactacgccaaccccaggcctggaaggaccgcttcattgatggtttcatctctcttggag 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82641 tactacgccaaccccaggcctggaaggaccgcttcattgatggtttcatctctcttggag 82582
Query: 760 ctccctggggtggctccatcaagcccatgctagtcttggcctcaggtga 808
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82581 ctccctggggtggctccatcaagcccatgctagtcttggcctcaggtga 82533
Score = 315 bits (159), Expect = 4e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 210 gtacctggctgcctggggaatcagctggaagccaagctggataaaccagatgtggtgaac 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83386 gtacctggctgcctggggaatcagctggaagccaagctggataaaccagatgtggtgaac 83327
Query: 270 tggatgtgctaccgcaagacagaggactttttcaccatttggctggatctcaatatgttc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83326 tggatgtgctaccgcaagacagaggactttttcaccatttggctggatctcaatatgttc 83267
Query: 330 ctaccccttggggtagactgctggattgataataccagg 368
|||||||||||||||||||||||||||||||||||||||
Sbjct: 83266 ctaccccttggggtagactgctggattgataataccagg 83228
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 364 ccagggttgtctacaaccgcacctctgggcgcgtgtccaacgcacccggtgtagagatcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83155 ccagggttgtctacaaccgcacctctgggcgcgtgtccaacgcacccggtgtagagatcc 83096
Query: 424 gtgtccccggctttggcaagacctactctgtcgagtacctggacaacagcaagttggcag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83095 gtgtccccggctttggcaagacctactctgtcgagtacctggacaacagcaagttggcag 83036
Query: 484 gt 485
||
Sbjct: 83035 gt 83034
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 481 caggttatatgcacacactggtacaaaacctggtcaataatgggtatgtgcgggatgaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82943 caggttatatgcacacactggtacaaaacctggtcaataatgggtatgtgcgggatgaga 82884
Query: 541 ccgtgcgggctgccccctacgactggcggctggagcccag 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 82883 ccgtgcgggctgccccctacgactggcggctggagcccag 82844
Score = 123 bits (62), Expect = 3e-25
Identities = 126/138 (91%), Gaps = 7/138 (5%)
Strand = Plus / Minus
Query: 1132 ggaccctgtggatgtgctctatgaggatggtgatgacactggtggctacgcgcaacaccc 1191
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct: 81243 ggaccctgtggatgtgctctatgaggatggtgatgacact-gtggctacgcgcagca-cc 81186
Query: 1192 aaattctgtgcccgcctgggagggccgccaacagccaccctgtgcaccctgctgccctct 1251
|| |||||||||| |||| |||||||||||||| || |||||||| ||||||| |||||
Sbjct: 81185 gaactctgtgcccg-ctggcagggccgccaacag-cagcctgtgca-cctgctg-cctct 81130
Query: 1252 gccctgggacacagcacc 1269
| ||||||||||||||||
Sbjct: 81129 g-cctgggacacagcacc 81113
Score = 105 bits (53), Expect = 7e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 158 gcacaccacgcccaaggctgagctcagtaaccacacacggcccgtcatcctcg 210
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84143 gcacaccacgcccaaggctgagctcagtaaccacacacggcccgtcatcctcg 84091
Score = 60.0 bits (30), Expect = 4e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 ttccagataaggccagctcaggactgcttc 30
||||||||||||||||||||||||||||||
Sbjct: 84344 ttccagataaggccagctcaggactgcttc 84315
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 47,012,675
Number of extensions: 236
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 8
Length of query: 1514
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1493
Effective length of database: 2,808,413,156
Effective search space: 4192960841908
Effective search space used: 4192960841908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)