Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008072
(1056 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069260.1| uridine-cytidine kinase 1 [Bos taurus]. 471 e-133
Alignment gi|NP_001179741.1| uridine-cytidine kinase 2 [Bos taurus]. 325 3e-89
Alignment gi|XP_002685875.1| PREDICTED: uridine-cytidine kinase 2-like [B... 325 3e-89
Alignment gi|XP_002692446.1| PREDICTED: uridine-cytidine kinase 1-like 1 ... 182 6e-46
Alignment gi|XP_870700.1| PREDICTED: uridine-cytidine kinase 1-like 1 iso... 182 6e-46
>ref|NP_001069260.1| uridine-cytidine kinase 1 [Bos taurus].
Length = 277
Score = 471 bits (1211), Expect = e-133
Identities = 233/263 (88%), Positives = 239/263 (90%)
Frame = +2
Query: 164 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 343
PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLT
Sbjct: 14 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTA 73
Query: 344 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 523
EQKAKALKGQYNFDHPDAFDN+LMHRTL IVEG+TVEVPTYDFVTHSRLAETTVVYPAD
Sbjct: 74 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLAETTVVYPAD 133
Query: 524 VVLFEGILVFYSQEIRDMFHLRLFVDTXXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKP 703
VVLFEGILVFYSQEIRDMFHLRLFVDT QRGRDLEQILTQYTTFVKP
Sbjct: 134 VVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVQRGRDLEQILTQYTTFVKP 193
Query: 704 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP 883
AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHR GANGRS+KRTFP
Sbjct: 194 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRAGANGRSHKRTFP 253
Query: 884 EPGDHPGVLASGKRSTWSPAADP 952
EPG+HP VLASGKRS ++ P
Sbjct: 254 EPGEHPAVLASGKRSHLESSSRP 276
>ref|NP_001179741.1| uridine-cytidine kinase 2 [Bos taurus].
Length = 261
Score = 325 bits (834), Expect = 3e-89
Identities = 167/241 (69%), Positives = 190/241 (78%), Gaps = 4/241 (1%)
Frame = +2
Query: 191 PFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKG 370
PFLIGVSGGTASGKS+VC KI++LLGQNEVD+RQ+++VILSQD FY+ LT EQKAKALKG
Sbjct: 20 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRALTSEQKAKALKG 79
Query: 371 QYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILV 550
Q+NFDHPDAFDNEL+ +TL I EG+TV++P YDFV+HSR ET VYPADVVLFEGIL
Sbjct: 80 QFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILA 139
Query: 551 FYSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLP 727
FYSQE+RD+F ++LFVDT +RGRDLEQIL+QY TFVKPAFEEFCLP
Sbjct: 140 FYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP 199
Query: 728 TKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGG-ANG--RSYKRTFPEPGDH 898
TKKYADVIIPRG DN+VAINLIVQHIQDILNG + K G NG S KR E
Sbjct: 200 TKKYADVIIPRGADNLVAINLIVQHIQDILNGGLSKRQTNGYLNGYTPSRKRQASESSSR 259
Query: 899 P 901
P
Sbjct: 260 P 260
>ref|XP_002685875.1| PREDICTED: uridine-cytidine kinase 2-like [Bos taurus].
Length = 261
Score = 325 bits (834), Expect = 3e-89
Identities = 167/241 (69%), Positives = 190/241 (78%), Gaps = 4/241 (1%)
Frame = +2
Query: 191 PFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKG 370
PFLIGVSGGTASGKS+VC KI++LLGQNEVD+RQ+++VILSQD FY+ LT EQKAKALKG
Sbjct: 20 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRALTSEQKAKALKG 79
Query: 371 QYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILV 550
Q+NFDHPDAFDNEL+ +TL I EG+TV++P YDFV+HSR ET VYPADVVLFEGIL
Sbjct: 80 QFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILA 139
Query: 551 FYSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLP 727
FYSQE+RD+F ++LFVDT +RGRDLEQIL+QY TFVKPAFEEFCLP
Sbjct: 140 FYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP 199
Query: 728 TKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGG-ANG--RSYKRTFPEPGDH 898
TKKYADVIIPRG DN+VAINLIVQHIQDILNG + K G NG S KR E
Sbjct: 200 TKKYADVIIPRGADNLVAINLIVQHIQDILNGGLSKRQTNGYLNGYTPSRKRQASESSSR 259
Query: 899 P 901
P
Sbjct: 260 P 260
>ref|XP_002692446.1| PREDICTED: uridine-cytidine kinase 1-like 1 [Bos taurus].
Length = 548
Score = 182 bits (461), Expect = 6e-46
Identities = 92/209 (44%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Frame = +2
Query: 194 FLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQ 373
F IG+ GG+ASGK+TV I+E L V V+LS D FYKVLT +Q+ +A
Sbjct: 99 FAIGLGGGSASGKTTVARMIIEALDVPWV-------VLLSMDSFYKVLTRQQQEQAAHNN 151
Query: 374 YNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVF 553
+NFDHPDAFD +L+ TL ++ +G++V+VP YDF THSR + +Y A+V++FEGI+ F
Sbjct: 152 FNFDHPDAFDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAF 211
Query: 554 YSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLPT 730
+ + ++ +++FVDT +RGRD+E ++ QY FVKPAF+++ PT
Sbjct: 212 ADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPT 271
Query: 731 KKYADVIIPRGVDNMVAINLIVQHIQDIL 817
+ AD+++PRG N VAI+LIVQH+ L
Sbjct: 272 MRVADIVVPRGSGNTVAIDLIVQHVHSQL 300
>ref|XP_870700.1| PREDICTED: uridine-cytidine kinase 1-like 1 isoform 3 [Bos taurus].
Length = 548
Score = 182 bits (461), Expect = 6e-46
Identities = 92/209 (44%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Frame = +2
Query: 194 FLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQ 373
F IG+ GG+ASGK+TV I+E L V V+LS D FYKVLT +Q+ +A
Sbjct: 99 FAIGLGGGSASGKTTVARMIIEALDVPWV-------VLLSMDSFYKVLTRQQQEQAAHNN 151
Query: 374 YNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVF 553
+NFDHPDAFD +L+ TL ++ +G++V+VP YDF THSR + +Y A+V++FEGI+ F
Sbjct: 152 FNFDHPDAFDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAF 211
Query: 554 YSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLPT 730
+ + ++ +++FVDT +RGRD+E ++ QY FVKPAF+++ PT
Sbjct: 212 ADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPT 271
Query: 731 KKYADVIIPRGVDNMVAINLIVQHIQDIL 817
+ AD+++PRG N VAI+LIVQH+ L
Sbjct: 272 MRVADIVVPRGSGNTVAIDLIVQHVHSQL 300
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,951,153
Number of extensions: 933082
Number of successful extensions: 4484
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4473
Number of HSP's successfully gapped: 5
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008072
(1056 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850638.1| PREDICTED: similar to uridine-cytidine kinase 1... 403 e-112
Alignment gi|XP_851247.1| PREDICTED: similar to uridine-cytidine kinase 2... 301 7e-82
Alignment gi|XP_855386.1| PREDICTED: similar to uridine-cytidine kinase 1... 160 1e-39
>ref|XP_850638.1| PREDICTED: similar to uridine-cytidine kinase 1 [Canis familiaris].
Length = 548
Score = 403 bits (1036), Expect = e-112
Identities = 204/251 (81%), Positives = 216/251 (86%)
Frame = +2
Query: 200 IGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQYN 379
IGVS GTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQYN
Sbjct: 303 IGVSEGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQYN 362
Query: 380 FDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVFYS 559
FDHPDAFDN+LMHRTL IVEG+TVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVFYS
Sbjct: 363 FDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVFYS 422
Query: 560 QEIRDMFHLRLFVDTXXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLPTKKY 739
QE+RDMFHLRLFVDT RGRDLEQILTQYTTFVKPAFEEFCLP K+
Sbjct: 423 QEVRDMFHLRLFVDTDSDVRLSRRVLRDVHRGRDLEQILTQYTTFVKPAFEEFCLPQKQ- 481
Query: 740 ADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFPEPGDHPGVLASG 919
+P V++ +AINLIVQHIQDIL+GDICKWHR G+NGRSYKRTFPEPGD PGVL SG
Sbjct: 482 ----LPASVEDSMAINLIVQHIQDILSGDICKWHR-GSNGRSYKRTFPEPGDRPGVLTSG 536
Query: 920 KRSTWSPAADP 952
KRS ++ P
Sbjct: 537 KRSHLESSSRP 547
>ref|XP_851247.1| PREDICTED: similar to uridine-cytidine kinase 2 [Canis familiaris].
Length = 288
Score = 301 bits (771), Expect = 7e-82
Identities = 156/228 (68%), Positives = 178/228 (78%), Gaps = 4/228 (1%)
Frame = +2
Query: 230 KSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQYNFDHPDAFDNE 409
KS+VC KI++LLGQNEVD RQ+++VILSQD FY+VLT EQKAKALKGQ+NFDHPDAFDNE
Sbjct: 60 KSSVCAKIVQLLGQNEVDCRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNE 119
Query: 410 LMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVFYSQEIRDMFHLR 589
L+ +TL I EG+TV++P YDFV+HSR ET VYPADVVLFEGIL FYSQE+RD+F ++
Sbjct: 120 LIFKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMK 179
Query: 590 LFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGV 766
LFVDT +RGRDLEQIL+QY TFVKPAFEEFCLPTKKYADVIIPRGV
Sbjct: 180 LFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGV 239
Query: 767 DNMVAINLIVQHIQDILNGDICKWHRGG-ANG--RSYKRTFPEPGDHP 901
DN+VAINLIVQHIQDILNG + K G NG S KR E P
Sbjct: 240 DNLVAINLIVQHIQDILNGGLSKRQTNGYLNGYIPSRKRQSSESSSRP 287
>ref|XP_855386.1| PREDICTED: similar to uridine-cytidine kinase 1-like 1 [Canis
familiaris].
Length = 844
Score = 160 bits (406), Expect = 1e-39
Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 299 LVILSQDRFYKVLTPEQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFV 478
+V+LS D FYKVLT +Q+ +A +NFDHPDAFD +L+ TL ++ +G++V+VP YDF
Sbjct: 394 VVLLSMDSFYKVLTTQQQEQAAHNNFNFDHPDAFDFDLIVSTLKKLKQGKSVKVPVYDFT 453
Query: 479 THSRLAETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRG 655
THSR + +Y A+V++FEGI+ F + + ++ +++FVDT +RG
Sbjct: 454 THSRKKDWKTLYGANVIIFEGIMAFADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERG 513
Query: 656 RDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDIL 817
RD+E ++ QY FVKPAF+++ PT + AD+++P G N VAI+LIVQH+ L
Sbjct: 514 RDIEGVIKQYNKFVKPAFDQYIQPTMRVADIVVPWGSGNTVAIDLIVQHMHSQL 567
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,625,320
Number of extensions: 967021
Number of successful extensions: 4478
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4467
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008072
(1056 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122298.1| PREDICTED: uridine-cytidine kinase 1-like is... 488 e-138
Alignment gi|XP_003122299.1| PREDICTED: uridine-cytidine kinase 1-like is... 464 e-131
>ref|XP_003122298.1| PREDICTED: uridine-cytidine kinase 1-like isoform 1 [Sus scrofa].
Length = 277
Score = 488 bits (1257), Expect = e-138
Identities = 242/263 (92%), Positives = 244/263 (92%)
Frame = +2
Query: 164 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 343
PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP
Sbjct: 14 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 73
Query: 344 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 523
EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD
Sbjct: 74 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 133
Query: 524 VVLFEGILVFYSQEIRDMFHLRLFVDTXXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKP 703
VVLFEGILVFYSQEIRDMFHLRLFVDT QRGRDLEQILTQYTTFVKP
Sbjct: 134 VVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVQRGRDLEQILTQYTTFVKP 193
Query: 704 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP 883
AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP
Sbjct: 194 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP 253
Query: 884 EPGDHPGVLASGKRSTWSPAADP 952
EPGDHPGVLASGKRS ++ P
Sbjct: 254 EPGDHPGVLASGKRSHLESSSRP 276
>ref|XP_003122299.1| PREDICTED: uridine-cytidine kinase 1-like isoform 2 [Sus scrofa].
Length = 268
Score = 464 bits (1193), Expect = e-131
Identities = 233/263 (88%), Positives = 235/263 (89%)
Frame = +2
Query: 164 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 343
PEADRPHQRPFLIG STVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP
Sbjct: 14 PEADRPHQRPFLIG---------STVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 64
Query: 344 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 523
EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD
Sbjct: 65 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 124
Query: 524 VVLFEGILVFYSQEIRDMFHLRLFVDTXXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKP 703
VVLFEGILVFYSQEIRDMFHLRLFVDT QRGRDLEQILTQYTTFVKP
Sbjct: 125 VVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVQRGRDLEQILTQYTTFVKP 184
Query: 704 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP 883
AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP
Sbjct: 185 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP 244
Query: 884 EPGDHPGVLASGKRSTWSPAADP 952
EPGDHPGVLASGKRS ++ P
Sbjct: 245 EPGDHPGVLASGKRSHLESSSRP 267
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,593,769
Number of extensions: 602881
Number of successful extensions: 2949
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2942
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008072
(1056 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035805.2| uridine-cytidine kinase 1 [Mus musculus]. 449 e-126
Alignment gi|NP_109649.1| uridine-cytidine kinase 2 [Mus musculus]. 325 5e-89
Alignment gi|NP_081041.2| uridine-cytidine kinase-like 1 [Mus musculus]. 183 2e-46
>ref|NP_035805.2| uridine-cytidine kinase 1 [Mus musculus].
Length = 283
Score = 449 bits (1154), Expect = e-126
Identities = 223/263 (84%), Positives = 233/263 (88%)
Frame = +2
Query: 164 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 343
PEADRP RPFLIGVSGGTASGKSTVCEKIMELLGQNEVD RQRKLVILSQD FYKVLT
Sbjct: 20 PEADRPQPRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDRRQRKLVILSQDCFYKVLTA 79
Query: 344 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 523
EQKAKALKGQYNFDHPDAFDN+LMH+TL IVEG+TVEVPTYDFVTHSRL ETTVVYPAD
Sbjct: 80 EQKAKALKGQYNFDHPDAFDNDLMHKTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPAD 139
Query: 524 VVLFEGILVFYSQEIRDMFHLRLFVDTXXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKP 703
VVLFEGILVFY+QEIRDMFHLRLFVDT QRGRDLEQILTQYT FVKP
Sbjct: 140 VVLFEGILVFYTQEIRDMFHLRLFVDTDSDVRLSRRVLRDVQRGRDLEQILTQYTAFVKP 199
Query: 704 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP 883
AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGD+CK HRGG NGR++KRTFP
Sbjct: 200 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDLCKRHRGGPNGRNHKRTFP 259
Query: 884 EPGDHPGVLASGKRSTWSPAADP 952
EPGDHPGVLA+GKRS ++ P
Sbjct: 260 EPGDHPGVLATGKRSHLESSSRP 282
>ref|NP_109649.1| uridine-cytidine kinase 2 [Mus musculus].
Length = 261
Score = 325 bits (832), Expect = 5e-89
Identities = 166/241 (68%), Positives = 190/241 (78%), Gaps = 4/241 (1%)
Frame = +2
Query: 191 PFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKG 370
PFLIGVSGGTASGKS+VC KI++LLGQNEVD+ Q+++VILSQD FY+VLT EQKAKALKG
Sbjct: 20 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYHQKQVVILSQDSFYRVLTSEQKAKALKG 79
Query: 371 QYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILV 550
Q+NFDHPDAFDNEL+ +TL I EG+TV++P YDFV+HSR ET +YPADVVLFEGIL
Sbjct: 80 QFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSRKEETVTIYPADVVLFEGILA 139
Query: 551 FYSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLP 727
FYSQE+RD+F ++LFVDT +RGRDLEQIL+QY TFVKPAFEEFCLP
Sbjct: 140 FYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP 199
Query: 728 TKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGG-ANG--RSYKRTFPEPGDH 898
TKKYADVIIPRG DN+VAINLIVQHIQDILNG + K G NG S KR E
Sbjct: 200 TKKYADVIIPRGADNLVAINLIVQHIQDILNGGLSKRQTNGYLNGYTPSRKRQASESSSR 259
Query: 899 P 901
P
Sbjct: 260 P 260
>ref|NP_081041.2| uridine-cytidine kinase-like 1 [Mus musculus].
Length = 548
Score = 183 bits (464), Expect = 2e-46
Identities = 93/209 (44%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Frame = +2
Query: 194 FLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQ 373
F IG+ GG+ASGK+TV I+E L V V+LS D FYKVLT +Q+ +A
Sbjct: 99 FAIGLGGGSASGKTTVARMIIEALDVPWV-------VLLSMDSFYKVLTQQQQEQAACNN 151
Query: 374 YNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVF 553
+NFDHPDAFD +L+ TL ++ +GR+V+VP YDF THSR + +Y A+V++FEGI+ F
Sbjct: 152 FNFDHPDAFDFDLIISTLKKLKQGRSVQVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAF 211
Query: 554 YSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLPT 730
+ + ++ +++FVDT +RGRD+E ++ QY FVKPAF+++ PT
Sbjct: 212 ADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPT 271
Query: 731 KKYADVIIPRGVDNMVAINLIVQHIQDIL 817
+ AD+++PRG N VAI+LIVQH+ L
Sbjct: 272 MRLADIVVPRGSGNTVAIDLIVQHVHSQL 300
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,079,604
Number of extensions: 772601
Number of successful extensions: 3331
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3316
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008072
(1056 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113620.1| uridine-cytidine kinase 1 isoform a [Homo sapie... 462 e-130
Alignment gi|NP_036606.2| uridine-cytidine kinase 2 [Homo sapiens]. 325 6e-89
Alignment gi|NP_001129426.1| uridine-cytidine kinase 1 isoform b [Homo sa... 281 9e-76
Alignment gi|NP_001180308.1| uridine-cytidine kinase-like 1 isoform 2 [Ho... 181 1e-45
Alignment gi|NP_060329.2| uridine-cytidine kinase-like 1 isoform 1 [Homo ... 181 1e-45
>ref|NP_113620.1| uridine-cytidine kinase 1 isoform a [Homo sapiens].
Length = 277
Score = 462 bits (1190), Expect = e-130
Identities = 228/263 (86%), Positives = 237/263 (90%)
Frame = +2
Query: 164 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 343
PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEV+ RQRK+VILSQDRFYKVLT
Sbjct: 14 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTA 73
Query: 344 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 523
EQKAKALKGQYNFDHPDAFDN+LMHRTL IVEG+TVEVPTYDFVTHSRL ETTVVYPAD
Sbjct: 74 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPAD 133
Query: 524 VVLFEGILVFYSQEIRDMFHLRLFVDTXXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKP 703
VVLFEGILVFYSQEIRDMFHLRLFVDT +RGRDLEQILTQYTTFVKP
Sbjct: 134 VVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKP 193
Query: 704 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGANGRSYKRTFP 883
AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGG+NGRSYKRTF
Sbjct: 194 AFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGSNGRSYKRTFS 253
Query: 884 EPGDHPGVLASGKRSTWSPAADP 952
EPGDHPG+L SGKRS ++ P
Sbjct: 254 EPGDHPGMLTSGKRSHLESSSRP 276
>ref|NP_036606.2| uridine-cytidine kinase 2 [Homo sapiens].
Length = 261
Score = 325 bits (832), Expect = 6e-89
Identities = 168/241 (69%), Positives = 190/241 (78%), Gaps = 4/241 (1%)
Frame = +2
Query: 191 PFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKG 370
PFLIGVSGGTASGKS+VC KI++LLGQNEVD+RQ+++VILSQD FY+VLT EQKAKALKG
Sbjct: 20 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKG 79
Query: 371 QYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILV 550
Q+NFDHPDAFDNEL+ +TL I EG+TV++P YDFV+HSR ET VYPADVVLFEGIL
Sbjct: 80 QFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILA 139
Query: 551 FYSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLP 727
FYSQE+RD+F ++LFVDT +RGRDLEQIL+QY TFVKPAFEEFCLP
Sbjct: 140 FYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLP 199
Query: 728 TKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICKWHRGGA-NG--RSYKRTFPEPGDH 898
TKKYADVIIPRG DN+VAINLIVQHIQDILNG K G NG S KR E
Sbjct: 200 TKKYADVIIPRGADNLVAINLIVQHIQDILNGGPSKRQTNGCLNGYTPSRKRQASESSSR 259
Query: 899 P 901
P
Sbjct: 260 P 260
>ref|NP_001129426.1| uridine-cytidine kinase 1 isoform b [Homo sapiens].
Length = 201
Score = 281 bits (718), Expect = 9e-76
Identities = 138/147 (93%), Positives = 142/147 (96%)
Frame = +2
Query: 164 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTP 343
PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEV+ RQRK+VILSQDRFYKVLT
Sbjct: 14 PEADRPHQRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTA 73
Query: 344 EQKAKALKGQYNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPAD 523
EQKAKALKGQYNFDHPDAFDN+LMHRTL IVEG+TVEVPTYDFVTHSRL ETTVVYPAD
Sbjct: 74 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPAD 133
Query: 524 VVLFEGILVFYSQEIRDMFHLRLFVDT 604
VVLFEGILVFYSQEIRDMFHLRLFVDT
Sbjct: 134 VVLFEGILVFYSQEIRDMFHLRLFVDT 160
>ref|NP_001180308.1| uridine-cytidine kinase-like 1 isoform 2 [Homo sapiens].
Length = 533
Score = 181 bits (459), Expect = 1e-45
Identities = 91/209 (43%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Frame = +2
Query: 194 FLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQ 373
F IG+ GG+ASGK+TV I+E L V V+LS D FYKVLT +Q+ +A
Sbjct: 84 FAIGLGGGSASGKTTVARMIIEALDVPWV-------VLLSMDSFYKVLTEQQQEQAAHNN 136
Query: 374 YNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVF 553
+NFDHPDAFD +L+ TL ++ +G++V+VP YDF THSR + +Y A+V++FEGI+ F
Sbjct: 137 FNFDHPDAFDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAF 196
Query: 554 YSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLPT 730
+ + ++ +++FVDT +RGRD+E ++ QY FVKP+F+++ PT
Sbjct: 197 ADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPT 256
Query: 731 KKYADVIIPRGVDNMVAINLIVQHIQDIL 817
+ AD+++PRG N VAI+LIVQH+ L
Sbjct: 257 MRLADIVVPRGSGNTVAIDLIVQHVHSQL 285
>ref|NP_060329.2| uridine-cytidine kinase-like 1 isoform 1 [Homo sapiens].
Length = 548
Score = 181 bits (459), Expect = 1e-45
Identities = 91/209 (43%), Positives = 135/209 (64%), Gaps = 1/209 (0%)
Frame = +2
Query: 194 FLIGVSGGTASGKSTVCEKIMELLGQNEVDHRQRKLVILSQDRFYKVLTPEQKAKALKGQ 373
F IG+ GG+ASGK+TV I+E L V V+LS D FYKVLT +Q+ +A
Sbjct: 99 FAIGLGGGSASGKTTVARMIIEALDVPWV-------VLLSMDSFYKVLTEQQQEQAAHNN 151
Query: 374 YNFDHPDAFDNELMHRTLTRIVEGRTVEVPTYDFVTHSRLAETTVVYPADVVLFEGILVF 553
+NFDHPDAFD +L+ TL ++ +G++V+VP YDF THSR + +Y A+V++FEGI+ F
Sbjct: 152 FNFDHPDAFDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGANVIIFEGIMAF 211
Query: 554 YSQEIRDMFHLRLFVDT-XXXXXXXXXXXXXXQRGRDLEQILTQYTTFVKPAFEEFCLPT 730
+ + ++ +++FVDT +RGRD+E ++ QY FVKP+F+++ PT
Sbjct: 212 ADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPT 271
Query: 731 KKYADVIIPRGVDNMVAINLIVQHIQDIL 817
+ AD+++PRG N VAI+LIVQH+ L
Sbjct: 272 MRLADIVVPRGSGNTVAIDLIVQHVHSQL 300
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,704,197
Number of extensions: 934230
Number of successful extensions: 4130
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4122
Number of HSP's successfully gapped: 5
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008072
(1056 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 458 e-126
>Sscrofa_Chr01
|| Length = 315321322
Score = 458 bits (231), Expect = e-126
Identities = 271/282 (96%), Gaps = 2/282 (0%)
Strand = Plus / Minus
Query: 776 gtggccatcaacctgatcgtgcagcacatccaggacatcctcaacggcgacatctgcaag 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305457900 gtggccatcaacctgatcgtgcagcacatccaggacatcctcaacggcgacatctgcaag 305457841
Query: 836 tggcaccgcggaggggccaacgggcgcagctacaagaggacgtttccggagccgggcgac 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305457840 tggcaccgcggaggggccaacgggcgcagctacaagaggacgtttccggagccgggcgac 305457781
Query: 896 caccccggtgtgctggcctcgggcaaacggt-ccacctggagtccagcagcagaccccac 954
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 305457780 caccccggtgtgctggcctcgggcaaacggtcccacctggagtccagcagcagaccccac 305457721
Query: 955 tgaggagcgggcgctgtccctgagacgcagcggacacgtcctctcccaagctgttaccgc 1014
||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||| ||
Sbjct: 305457720 tgaggagcgggcgctctccctgagacgcagcggacacgtcctctccgaggctggtacggc 305457661
Query: 1015 cggggtgggggtcggggtccangcgttcctccctgccgtggg 1056
|||||| |||||||||||||| |||| |||| | ||||||||
Sbjct: 305457660 cggggt-ggggtcggggtccaggcgtccctcgccgccgtggg 305457620
Score = 458 bits (231), Expect = e-126
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 2 gcttgcctcccggaagtggagctggggggcagcgtctcagatctctgcgctggggctggc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305462181 gcttgcctcccggaagtggagctggggggcagcgtctcagatctctgcgctggggctggc 305462122
Query: 62 tggccggctggttcggggtggcggcgggagcgaggaacccgatgcgggcgagcggcaccg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305462121 tggccggctggttcggggtggcggcgggagcgaggaacccgatgcgggcgagcggcaccg 305462062
Query: 122 gggatggctgcggctggaggcggggactgcgagggcgcggcgcccgaggcggaccgtcct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305462061 gggatggctgcggctggaggcggggactgcgagggcgcggcgcccgaggcggaccgtcct 305462002
Query: 182 caccagcggcccttcctgatcggggtgagcggcggcaccgcgagcggcaag 232
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305462001 caccagcggcccttcctgatcggggtgagcggcggcaccgcgagcggcaag 305461951
Score = 321 bits (162), Expect = 4e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 231 agtcaactgtctgtgagaagatcatggagctgctgggacagaatgaagtagaccacaggc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305461565 agtcaactgtctgtgagaagatcatggagctgctgggacagaatgaagtagaccacaggc 305461506
Query: 291 agcggaagctggtcatcctgagccaagacaggttctataaggtcctgaccccggagcaga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305461505 agcggaagctggtcatcctgagccaagacaggttctataaggtcctgaccccggagcaga 305461446
Query: 351 aggccaaggccttgaagggacagtacaattttgaccatccag 392
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305461445 aggccaaggccttgaagggacagtacaattttgaccatccag 305461404
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 487 caggctagcggagaccacggtggtctaccccgcggacgtggtcctgttcgaggggatcct 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305460457 caggctagcggagaccacggtggtctaccccgcggacgtggtcctgttcgaggggatcct 305460398
Query: 547 ggtcttctactcccaggagatccgggacatgttccacctgcgtctcttcgtggacaccga 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305460397 ggtcttctactcccaggagatccgggacatgttccacctgcgtctcttcgtggacaccga 305460338
Query: 607 ctctgacgtcaggctgtcgcgaagag 632
||||||||||||||||||||||||||
Sbjct: 305460337 ctctgacgtcaggctgtcgcgaagag 305460312
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 390 cagatgcttttgataacgagctgatgcacaggacgctgacacgcatcgtggagggcagaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305460637 cagatgcttttgataacgagctgatgcacaggacgctgacacgcatcgtggagggcagaa 305460578
Query: 450 ctgtcgaggtcccaacctatgattttgtgacccactccagg 490
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 305460577 ctgtcgaggtcccaacctatgattttgtgacccactccagg 305460537
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 631 agtgctccgggacgtgcagcgcgggcgcgacctggagcagatcctgacgcagtacaccac 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305460227 agtgctccgggacgtgcagcgcgggcgcgacctggagcagatcctgacgcagtacaccac 305460168
Query: 691 cttcgtcaagccggcctttgaggagttctgcctgccg 727
|||||||||||||||||||||||||||||||||||||
Sbjct: 305460167 cttcgtcaagccggcctttgaggagttctgcctgccg 305460131
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 727 gacgaagaagtacgccgacgtgataatccctcgaggcgtcgacaacatgg 776
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305458379 gacgaagaagtacgccgacgtgataatccctcgaggcgtcgacaacatgg 305458330
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,062,436
Number of extensions: 127
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 7
Length of query: 1056
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1035
Effective length of database: 2,808,413,156
Effective search space: 2906707616460
Effective search space used: 2906707616460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)