Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008076
(964 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777025.1| excitatory amino acid transporter 1 [Bos taurus]. 442 e-124
Alignment gi|NP_001092560.1| excitatory amino acid transporter 4 [Bos tau... 269 3e-72
Alignment gi|NP_777024.1| excitatory amino acid transporter 3 [Bos taurus]. 158 8e-39
Alignment gi|NP_001192833.1| excitatory amino acid transporter 5 [Bos tau... 146 2e-35
Alignment gi|XP_002686444.1| PREDICTED: solute carrier family 1 (high aff... 146 2e-35
Alignment gi|XP_002693569.1| PREDICTED: solute carrier family 1 (glial hi... 142 6e-34
Alignment gi|XP_001256027.1| PREDICTED: excitatory amino acid transporter... 142 6e-34
Alignment gi|XP_614642.3| PREDICTED: solute carrier family 1 (glial high ... 142 6e-34
Alignment gi|NP_001075046.1| neutral amino acid transporter A [Bos taurus]. 121 8e-28
Alignment gi|NP_777026.1| neutral amino acid transporter B(0) [Bos taurus]. 117 2e-26
>ref|NP_777025.1| excitatory amino acid transporter 1 [Bos taurus].
Length = 542
Score = 442 bits (1137), Expect = e-124
Identities = 228/248 (91%), Positives = 232/248 (93%)
Frame = +3
Query: 219 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 398
MTKSNGEEAR+GGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV
Sbjct: 1 MTKSNGEEARLGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 60
Query: 399 GTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 578
GTILGF LRPY+MSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG
Sbjct: 61 GTILGFTLRPYRMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 120
Query: 579 MRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP 758
MRAVVYYMTTT HPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP
Sbjct: 121 MRAVVYYMTTTIIAVVIGIIIVIIIHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP 180
Query: 759 NLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNG 938
NLVEACFKQFKTNYEK+SFKVPIQPN+TLVGAVINNVSEAMETLTRI EELVPVPGSVNG
Sbjct: 181 NLVEACFKQFKTNYEKRSFKVPIQPNETLVGAVINNVSEAMETLTRITEELVPVPGSVNG 240
Query: 939 VNALGLVV 962
VNALGLVV
Sbjct: 241 VNALGLVV 248
>ref|NP_001092560.1| excitatory amino acid transporter 4 [Bos taurus].
Length = 564
Score = 269 bits (687), Expect = 3e-72
Identities = 140/263 (53%), Positives = 184/263 (69%), Gaps = 17/263 (6%)
Frame = +3
Query: 225 KSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIVGT 404
+ +G+ G ++R Q+ +++R L + ++Q +T+E V +L RNAF+LLTV+AV++G
Sbjct: 11 RESGQRLGRVGWLQRLQESLQQRALRMRLRLQTMTREHVLRFLRRNAFILLTVSAVVIGV 70
Query: 405 ILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMR 584
L FALRPY++SYR++KYFSFPGELLMRMLQMLVLPLI+SSLVTGMA+LD+KA+G+MGMR
Sbjct: 71 SLAFALRPYQLSYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKATGRMGMR 130
Query: 585 AVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPPNL 764
A VYYM TT HPGKG+KE +HREG+I + ADAF+DL+RNMFPPNL
Sbjct: 131 AAVYYMVTTVIAVFIGILMVTIIHPGKGSKEGLHREGRIETIPTADAFMDLVRNMFPPNL 190
Query: 765 VEACFKQFKTNYEKK--SFKVPIQPNDTLVG-------------AVINNVSEAMETLTRI 899
VEACFKQFKT Y + + V N + +G ++ NV+ A+ TL +
Sbjct: 191 VEACFKQFKTQYSTRLVTRTVVRTDNGSELGTSMPPLSSLENGTGLLENVTRALGTLQEV 250
Query: 900 K--EELVPVPGSVNGVNALGLVV 962
EE VPVPGS NG+NALGLVV
Sbjct: 251 LSFEETVPVPGSANGINALGLVV 273
>ref|NP_777024.1| excitatory amino acid transporter 3 [Bos taurus].
Length = 524
Score = 158 bits (399), Expect = 8e-39
Identities = 92/211 (43%), Positives = 128/211 (60%), Gaps = 2/211 (0%)
Frame = +3
Query: 336 DVKSYLFRNAFVLLTVTAVIVGTILGFALRPY-KMSYREVKYFSFPGELLMRMLQMLVLP 512
D K +L N +L TV AV++G ++G +R Y K+S E YFSFPGE+LMRML++++LP
Sbjct: 10 DWKRFLRNNWLLLSTVVAVVLGIVIGVLVREYSKLSNLEKFYFSFPGEILMRMLKLVILP 69
Query: 513 LIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKEN-MHR 689
LI+SS++TG+A LDS SGK+G+RAVVYY TT PG K N + R
Sbjct: 70 LIVSSMITGVATLDSNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVNEIDR 129
Query: 690 EGKIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNV 869
G +V+ DA LDLIRNMFP NLV+ACF+Q+KT E+ ++ +P A + +
Sbjct: 130 TGNTPEVSTVDAMLDLIRNMFPENLVQACFQQYKTTREE--VELSEEPGTNSTEATVTAI 187
Query: 870 SEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
+ + KE V V +G+N LGL+V
Sbjct: 188 MTTAISKNKTKEYKV-VGMYSDGINVLGLIV 217
>ref|NP_001192833.1| excitatory amino acid transporter 5 [Bos taurus].
Length = 560
Score = 146 bits (369), Expect = 2e-35
Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 12/214 (5%)
Frame = +3
Query: 357 RNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVT 536
RN ++L+V +V VG +LGF LR ++S +E+ YF FPGELLMRML+ML+LPL++SSL++
Sbjct: 16 RNGLLILSVLSVTVGCLLGFFLRTRRLSPQEISYFQFPGELLMRMLKMLILPLVVSSLMS 75
Query: 537 GMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHP-GKGTKENMHREGKIVQVT 713
G+A+LD+K S ++G+ V YY+ TT HP G KE + GK + ++
Sbjct: 76 GLASLDAKTSSRLGILTVAYYLWTTFVAVIVGIIMVSIIHPGGAAQKETTEQSGKPI-MS 134
Query: 714 AADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLT 893
+AD LDLIRNMFP NLVEA FKQ++T K P ++ I E +
Sbjct: 135 SADPLLDLIRNMFPANLVEATFKQYRTK-TTPVVKSPTVASEEAPSRRILIYGVQGENDS 193
Query: 894 RIKE---ELVP--------VPGSVNGVNALGLVV 962
R++ +L P PG+ +G+N LG+V+
Sbjct: 194 RVQNFALDLTPPPEVVYKSEPGTSDGMNVLGIVI 227
>ref|XP_002686444.1| PREDICTED: solute carrier family 1 (high affinity
aspartate/glutamate transporter), member 6-like [Bos
taurus].
Length = 560
Score = 146 bits (369), Expect = 2e-35
Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 12/214 (5%)
Frame = +3
Query: 357 RNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVT 536
RN ++L+V +V VG +LGF LR ++S +E+ YF FPGELLMRML+ML+LPL++SSL++
Sbjct: 16 RNGLLILSVLSVTVGCLLGFFLRTRRLSPQEISYFQFPGELLMRMLKMLILPLVVSSLMS 75
Query: 537 GMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHP-GKGTKENMHREGKIVQVT 713
G+A+LD+K S ++G+ V YY+ TT HP G KE + GK + ++
Sbjct: 76 GLASLDAKTSSRLGILTVAYYLWTTFVAVIVGIIMVSIIHPGGAAQKETTEQSGKPI-MS 134
Query: 714 AADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLT 893
+AD LDLIRNMFP NLVEA FKQ++T K P ++ I E +
Sbjct: 135 SADPLLDLIRNMFPANLVEATFKQYRTK-TTPVVKSPTVASEEAPSRRILIYGVQGENDS 193
Query: 894 RIKE---ELVP--------VPGSVNGVNALGLVV 962
R++ +L P PG+ +G+N LG+V+
Sbjct: 194 RVQNFALDLTPPPEVVYKSEPGTSDGMNVLGIVI 227
>ref|XP_002693569.1| PREDICTED: solute carrier family 1 (glial high affinity glutamate
transporter), member 2 [Bos taurus].
Length = 613
Score = 142 bits (357), Expect = 6e-34
Identities = 87/209 (41%), Positives = 126/209 (60%), Gaps = 6/209 (2%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 80 LGKNLLLTLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 139
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 140 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 199
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAME 884
+V++ DAFLDLIRN+FP NLV+ACF+Q +T +K P + AV++ ++ E
Sbjct: 200 EVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSDEDGNATNAVLSLLN---E 256
Query: 885 TLTRIKEELVPVPGS----VNGVNALGLV 959
T+T + EE V +G+N LGL+
Sbjct: 257 TVTEVPEETQVVIKKGLEFKDGMNVLGLI 285
>ref|XP_001256027.1| PREDICTED: excitatory amino acid transporter 2-like, partial [Bos
taurus].
Length = 280
Score = 142 bits (357), Expect = 6e-34
Identities = 87/209 (41%), Positives = 126/209 (60%), Gaps = 6/209 (2%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 35 LGKNLLLTLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 94
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 95 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 154
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAME 884
+V++ DAFLDLIRN+FP NLV+ACF+Q +T +K P + AV++ ++ E
Sbjct: 155 EVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSDEDGNATNAVLSLLN---E 211
Query: 885 TLTRIKEELVPVPGS----VNGVNALGLV 959
T+T + EE V +G+N LGL+
Sbjct: 212 TVTEVPEETQVVIKKGLEFKDGMNVLGLI 240
>ref|XP_614642.3| PREDICTED: solute carrier family 1 (glial high affinity glutamate
transporter), member 2 [Bos taurus].
Length = 613
Score = 142 bits (357), Expect = 6e-34
Identities = 87/209 (41%), Positives = 126/209 (60%), Gaps = 6/209 (2%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 80 LGKNLLLTLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 139
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 140 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 199
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAME 884
+V++ DAFLDLIRN+FP NLV+ACF+Q +T +K P + AV++ ++ E
Sbjct: 200 EVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSDEDGNATNAVLSLLN---E 256
Query: 885 TLTRIKEELVPVPGS----VNGVNALGLV 959
T+T + EE V +G+N LGL+
Sbjct: 257 TVTEVPEETQVVIKKGLEFKDGMNVLGLI 285
>ref|NP_001075046.1| neutral amino acid transporter A [Bos taurus].
Length = 530
Score = 121 bits (304), Expect = 8e-28
Identities = 72/212 (33%), Positives = 114/212 (53%), Gaps = 7/212 (3%)
Frame = +3
Query: 348 YLFRNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISS 527
+L R+ VLLTV+ V+ G LG ALR +++ +V Y +FPGE+L+RML+M++LPL++ S
Sbjct: 38 FLRRHGLVLLTVSGVVAGAGLGAALRGLQLNRTQVTYLAFPGEMLLRMLRMIILPLVVCS 97
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKI-- 701
LV+G A+LD+ + G++G A+ Y+ TT PG G++ + +
Sbjct: 98 LVSGAASLDASSLGRLGGIAIAYFGLTTLGASALAVALAFIIKPGSGSQTLQSSDLGLED 157
Query: 702 -----VQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINN 866
V D+FLDL RN+FP NLV A F+ + T+Y + ++ N
Sbjct: 158 SGPPPVPKETVDSFLDLTRNLFPSNLVVAAFRTYATDYREVTY----------------N 201
Query: 867 VSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
S T+ E +P+ + G+N LGLV+
Sbjct: 202 TSAGKVTI-----EKIPIGTEIEGMNILGLVL 228
>ref|NP_777026.1| neutral amino acid transporter B(0) [Bos taurus].
Length = 539
Score = 117 bits (292), Expect = 2e-26
Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 8/218 (3%)
Frame = +3
Query: 333 EDVKSYLFRNAFVLLTVTAVIVGTILGFALR----PYKMSYREVKYFSFPGELLMRMLQM 500
+ V+ L N VLLTV AV+ G LG + + + ++ FSFPGELL+R+L+M
Sbjct: 44 DQVRRCLRANLLVLLTVVAVVAGVALGLGVSGAGGAFALGPARLEAFSFPGELLLRLLKM 103
Query: 501 LVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKEN 680
++LPL++ SL+ G A+LD A G++G A+++++ TT PG
Sbjct: 104 IILPLVVCSLIGGAASLDPSALGRLGAWALLFFLVTTLLASALGVGLALALQPGAAFAAI 163
Query: 681 MHREGKIVQVTAA----DAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLV 848
G V+ + D+FLDL+RN+FP NLV A F+ + T+Y+++ F N TLV
Sbjct: 164 NTSVGAPVEEAPSKEVLDSFLDLVRNIFPSNLVSAAFRSYTTSYKERLF------NGTLV 217
Query: 849 GAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
VP G V G+N LGLVV
Sbjct: 218 --------------------KVPTGGEVEGMNILGLVV 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,123,455
Number of extensions: 938948
Number of successful extensions: 3019
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2929
Number of HSP's successfully gapped: 10
Length of query: 321
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 219
Effective length of database: 14,306,398
Effective search space: 3133101162
Effective search space used: 3133101162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008076
(964 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003136.1| excitatory amino acid transporter 1 [Canis l... 426 e-119
Alignment gi|NP_001003137.1| excitatory amino acid transporter 4 [Canis l... 267 1e-71
Alignment gi|NP_001003139.1| excitatory amino acid transporter 3 [Canis l... 159 3e-39
Alignment gi|NP_001184088.1| excitatory amino acid transporter 5 [Canis l... 150 1e-36
Alignment gi|NP_001003138.1| excitatory amino acid transporter 2 [Canis l... 142 5e-34
Alignment gi|XP_538511.2| PREDICTED: similar to Neutral amino acid transp... 124 1e-28
Alignment gi|XP_541540.2| PREDICTED: similar to Neutral amino acid transp... 107 2e-23
Alignment gi|XP_865263.1| PREDICTED: similar to Neutral amino acid transp... 100 3e-21
>ref|NP_001003136.1| excitatory amino acid transporter 1 [Canis lupus familiaris].
Length = 542
Score = 426 bits (1096), Expect = e-119
Identities = 220/248 (88%), Positives = 227/248 (91%)
Frame = +3
Query: 219 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 398
MTKSN EE R GGRMERFQ+GVRKRTLLAK+KVQNITKEDVKSYLFRNAFVLLTVTAVIV
Sbjct: 1 MTKSNEEEPRTGGRMERFQRGVRKRTLLAKRKVQNITKEDVKSYLFRNAFVLLTVTAVIV 60
Query: 399 GTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 578
GTILGF LRPY+MSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG
Sbjct: 61 GTILGFTLRPYRMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 120
Query: 579 MRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP 758
MRAVVYYMTTT HPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP
Sbjct: 121 MRAVVYYMTTTIIAVVIGIIIVIIIHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP 180
Query: 759 NLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNG 938
NLVEACFKQFKTNYEK+SFKVPIQ N+TL+ AVINNVSEAMETLTRI EEL+PVPGSVNG
Sbjct: 181 NLVEACFKQFKTNYEKRSFKVPIQSNETLMAAVINNVSEAMETLTRITEELIPVPGSVNG 240
Query: 939 VNALGLVV 962
VNALGLVV
Sbjct: 241 VNALGLVV 248
>ref|NP_001003137.1| excitatory amino acid transporter 4 [Canis lupus familiaris].
Length = 564
Score = 267 bits (683), Expect = 1e-71
Identities = 139/263 (52%), Positives = 184/263 (69%), Gaps = 17/263 (6%)
Frame = +3
Query: 225 KSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIVGT 404
+ +G+ G ++R Q+ +++R L + ++Q +T+E V +L RNAF+LLTV+AV++G
Sbjct: 11 RESGQRLGRVGWLQRLQESLQQRALRTRLRLQTMTREHVLRFLRRNAFILLTVSAVVIGV 70
Query: 405 ILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMR 584
L FALRPY+++YR++KYFSFPGELLMRMLQMLVLPLI+SSLVTGMA+LD+KA+G+MGMR
Sbjct: 71 SLAFALRPYQLTYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKATGRMGMR 130
Query: 585 AVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPPNL 764
A VYYM TT HPGKG+KE +HREG+I + ADAF+DL+RNMFPPNL
Sbjct: 131 AAVYYMVTTVIAVFIGILMVTIIHPGKGSKEGLHREGRIETIPTADAFMDLVRNMFPPNL 190
Query: 765 VEACFKQFKTNYEKKSFKVPI--QPNDTLVG-------------AVINNVSEAMETLTRI 899
VEACFKQFKT Y + I N + +G +++ NV+ A+ TL +
Sbjct: 191 VEACFKQFKTQYSTRLVTRTIVRTENGSELGTSMPPPSSMDNGTSLLENVTWALGTLQEV 250
Query: 900 K--EELVPVPGSVNGVNALGLVV 962
EE VPVPGS NG+NALGLVV
Sbjct: 251 LSFEETVPVPGSANGINALGLVV 273
>ref|NP_001003139.1| excitatory amino acid transporter 3 [Canis lupus familiaris].
Length = 524
Score = 159 bits (403), Expect = 3e-39
Identities = 92/211 (43%), Positives = 129/211 (61%), Gaps = 2/211 (0%)
Frame = +3
Query: 336 DVKSYLFRNAFVLLTVTAVIVGTILGFALRPY-KMSYREVKYFSFPGELLMRMLQMLVLP 512
D + +L N +L TV AV++G +G +R Y K+S E YF+FPGE+LMRML++++LP
Sbjct: 10 DCRRFLRNNWLLLSTVAAVVLGIAIGVLVREYSKLSSLEKFYFAFPGEILMRMLKLIILP 69
Query: 513 LIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTK-ENMHR 689
LIISS++TG+AALDS SGK+G+RAV+YY TT PG K + + R
Sbjct: 70 LIISSMITGVAALDSSVSGKIGLRAVIYYFCTTVIAVVLGIVLVVSIKPGVSQKVDEIDR 129
Query: 690 EGKIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNV 869
G +V+ DA LDLIRNMFP NLV+ACF+Q+KT E+ S P +P + A + +
Sbjct: 130 TGSSPEVSTVDAMLDLIRNMFPENLVQACFQQYKTKREEVS--SPSEPGMNMTEASVTAI 187
Query: 870 SEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
+ + KE V V +G+N LGL+V
Sbjct: 188 MTTAISKNKTKEYKV-VGMYSDGINVLGLIV 217
>ref|NP_001184088.1| excitatory amino acid transporter 5 [Canis lupus familiaris].
Length = 574
Score = 150 bits (380), Expect = 1e-36
Identities = 88/214 (41%), Positives = 129/214 (60%), Gaps = 12/214 (5%)
Frame = +3
Query: 357 RNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVT 536
RN ++L+V +V VG +LGF LR ++S +E+ YF FPGELLMRML+ML+LPL++SSL++
Sbjct: 30 RNGLLILSVLSVTVGCLLGFFLRTRRLSPQEISYFQFPGELLMRMLKMLILPLVVSSLMS 89
Query: 537 GMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHP-GKGTKENMHREGKIVQVT 713
G+A+LD+K S ++G+ V YY+ TT HP G KE M + GK + ++
Sbjct: 90 GLASLDAKTSSRLGILTVAYYLWTTFVAVIVGIIMVSIIHPGGAAQKETMEQSGKAI-MS 148
Query: 714 AADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLT 893
+ADA LDLIRNMFP NLVEA FKQ++T K P ++ I E +
Sbjct: 149 SADAQLDLIRNMFPANLVEATFKQYRTK-TTPIIKSPKMASEEAAPRQILIYGVQEENGS 207
Query: 894 RIKE---ELVP--------VPGSVNGVNALGLVV 962
R++ +L P P +++G+N LG+V+
Sbjct: 208 RVQNFALDLTPPPEIVYKSEPDTIDGMNVLGIVI 241
>ref|NP_001003138.1| excitatory amino acid transporter 2 [Canis lupus familiaris].
Length = 564
Score = 142 bits (358), Expect = 5e-34
Identities = 88/209 (42%), Positives = 126/209 (60%), Gaps = 6/209 (2%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 32 LGKNLLLTLTVFGVILGAVCGGLLRLASPLHPDVVMLIAFPGDILMRMLKMLILPLIISS 91
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 92 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 151
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAME 884
+V++ DAFLDLIRN+FP NLV+ACF+Q +T +K P + AVI+ ++ E
Sbjct: 152 EVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSDEDSNATNAVISLLN---E 208
Query: 885 TLTRIKEELVPVPGS----VNGVNALGLV 959
T+T EE+ V +G+N LGL+
Sbjct: 209 TVTEAPEEVKVVIKKGLEFKDGMNVLGLI 237
>ref|XP_538511.2| PREDICTED: similar to Neutral amino acid transporter A (SATT)
(Alanine/serine/cysteine/ threonine transporter) (ASCT1)
[Canis familiaris].
Length = 529
Score = 124 bits (312), Expect = 1e-28
Identities = 76/212 (35%), Positives = 112/212 (52%), Gaps = 7/212 (3%)
Frame = +3
Query: 348 YLFRNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISS 527
+L R+A VLLTV+AV+ G LG ALR +S +V Y +FPGE+L+RML+M++LPL++ S
Sbjct: 35 FLRRHALVLLTVSAVLAGAGLGAALRGLGLSRTQVAYLAFPGEMLLRMLRMIILPLVVCS 94
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHRE----- 692
LV+G A+LD+ + G++G AV Y+ TT PG G + +
Sbjct: 95 LVSGAASLDASSLGRLGGIAVAYFGLTTLGASALAVALAFIVKPGSGAQTLQSSDLGLED 154
Query: 693 --GKIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINN 866
D+FLDL RN+FP NLV A F+ + T+Y + VI+N
Sbjct: 155 SGSPPAPKETVDSFLDLARNLFPSNLVVATFRTYATDYRE----------------VIHN 198
Query: 867 VSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
S + E +P+ + G+N LGLV+
Sbjct: 199 TSSG-----NVTHEKIPIGTEIEGMNILGLVL 225
>ref|XP_541540.2| PREDICTED: similar to Neutral amino acid transporter B(0) (ATB(0))
(Sodium-dependent neutral amino acid transporter type 2)
(RD114/simian type D retrovirus receptor) (Baboon M7
virus receptor) isoform 1 [Canis familiaris].
Length = 541
Score = 107 bits (266), Expect = 2e-23
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 10/198 (5%)
Frame = +3
Query: 327 TKEDVKSYLFRNAFVLLTVTAVIVGTILGFALR----PYKMSYREVKYFSFPGELLMRML 494
+++ V+ L N VLLTV AV+ G LG + + + F+FPGELL+R+L
Sbjct: 42 SRDRVRRCLRANLLVLLTVVAVVAGVALGMGVSGAGGALALGPARLAAFAFPGELLLRLL 101
Query: 495 QMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPG---K 665
+M++LPL++ SL+ G A+LDS A G++G A+++++ TT PG
Sbjct: 102 KMIILPLVVCSLIGGAASLDSSALGRLGAWALLFFLVTTLLASALGVVLALALQPGAAFA 161
Query: 666 GTKENMHREGKIVQV---TAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPN 836
+ G + + D+FLDL+RN+FP NLV A F+ + T YE + N
Sbjct: 162 AINASAAATGGVEEAPGKEVLDSFLDLVRNIFPSNLVSAAFRSYSTTYEHRWI------N 215
Query: 837 DTLVGAVINNVSEAMETL 890
T+V I E+M L
Sbjct: 216 GTMVKVPIGEEVESMNIL 233
>ref|XP_865263.1| PREDICTED: similar to Neutral amino acid transporter B(0) (ATB(0))
(Sodium-dependent neutral amino acid transporter type 2)
(RD114/simian type D retrovirus receptor) (Baboon M7
virus receptor) isoform 2 [Canis familiaris].
Length = 534
Score = 100 bits (248), Expect = 3e-21
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 11/189 (5%)
Frame = +3
Query: 327 TKEDVKSYLFRNAFVLLTVTAVIVGTILGFALR----PYKMSYREVKYFSFPGELLMRML 494
+++ V+ L N VLLTV AV+ G LG + + + F+FPGELL+R+L
Sbjct: 42 SRDRVRRCLRANLLVLLTVVAVVAGVALGMGVSGAGGALALGPARLAAFAFPGELLLRLL 101
Query: 495 QMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPG---K 665
+M++LPL++ SL+ G A+LDS A G++G A+++++ TT PG
Sbjct: 102 KMIILPLVVCSLIGGAASLDSSALGRLGAWALLFFLVTTLLASALGVVLALALQPGAAFA 161
Query: 666 GTKENMHREGKIVQV---TAADAFLDLIRNMFPPNLVEACFKQFKT-NYEKKSFKVPIQP 833
+ G + + D+FLDL+RN+FP NLV A F+ Y ++ QP
Sbjct: 162 AINASAAATGGVEEAPGKEVLDSFLDLVRNIFPSNLVSAAFRSVSPWGYVPRALAGLSQP 221
Query: 834 NDTLVGAVI 860
+ ++G V+
Sbjct: 222 HMNILGLVV 230
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,758,130
Number of extensions: 967040
Number of successful extensions: 3065
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2985
Number of HSP's successfully gapped: 8
Length of query: 321
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 218
Effective length of database: 15,440,896
Effective search space: 3366115328
Effective search space used: 3366115328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008076
(964 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123477.1| PREDICTED: excitatory amino acid transporter... 270 9e-73
Alignment gi|NP_001158121.1| excitatory amino acid transporter 3 [Sus scr... 157 6e-39
Alignment gi|XP_003128049.1| PREDICTED: excitatory amino acid transporter... 146 2e-35
Alignment gi|XP_003353950.1| PREDICTED: excitatory amino acid transporter... 140 1e-33
Alignment gi|XP_003353949.1| PREDICTED: excitatory amino acid transporter... 136 2e-32
Alignment gi|XP_003125135.2| PREDICTED: neutral amino acid transporter A-... 124 8e-29
Alignment gi|XP_003133937.2| PREDICTED: excitatory amino acid transporter... 119 2e-27
Alignment gi|XP_003127286.1| PREDICTED: neutral amino acid transporter B(... 110 1e-24
Alignment gi|XP_003127285.1| PREDICTED: neutral amino acid transporter B(... 110 1e-24
>ref|XP_003123477.1| PREDICTED: excitatory amino acid transporter 4-like [Sus scrofa].
Length = 564
Score = 270 bits (690), Expect = 9e-73
Identities = 139/263 (52%), Positives = 184/263 (69%), Gaps = 17/263 (6%)
Frame = +3
Query: 225 KSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIVGT 404
+ +G+ G ++R Q+ +++R L + ++Q +T+E V +L RNAF+LLTV+AV++G
Sbjct: 11 RESGQRLGRVGWLQRLQESLQQRALRTRLRLQTMTREHVLRFLRRNAFILLTVSAVVIGV 70
Query: 405 ILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMR 584
L FALRPY++SYR++KYFSFPGELLMRMLQMLVLPLI+SSLVTGMA+LD+KA+G+MGMR
Sbjct: 71 SLAFALRPYQLSYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKATGRMGMR 130
Query: 585 AVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPPNL 764
A VYYM TT HPGKG+KE +HREG+I + ADAF+DL+RNMFPPNL
Sbjct: 131 AAVYYMVTTVIAVFIGILMVTIIHPGKGSKEGLHREGRIETIPTADAFMDLVRNMFPPNL 190
Query: 765 VEACFKQFKTNYEKKSFK-------------VPIQPNDTLVG--AVINNVSEAMETLTRI 899
VEACFKQFKT Y + + P+ +L +++ NV+ A+ TL +
Sbjct: 191 VEACFKQFKTQYSTRLVTRTIVRTDNGSEPGTSMPPSSSLENGTSLLENVTRALGTLHEV 250
Query: 900 K--EELVPVPGSVNGVNALGLVV 962
EE VPVPGS NG+NALGLVV
Sbjct: 251 LSFEETVPVPGSANGINALGLVV 273
>ref|NP_001158121.1| excitatory amino acid transporter 3 [Sus scrofa].
Length = 524
Score = 157 bits (398), Expect = 6e-39
Identities = 91/211 (43%), Positives = 127/211 (60%), Gaps = 2/211 (0%)
Frame = +3
Query: 336 DVKSYLFRNAFVLLTVTAVIVGTILGFALRPY-KMSYREVKYFSFPGELLMRMLQMLVLP 512
D K +L N +L TV +V++G ++G +R Y K+S E YFSFPGE+LMRML++++LP
Sbjct: 10 DWKRFLRNNWLLLSTVASVVLGIVIGVLVREYSKLSNLEKFYFSFPGEILMRMLKLVILP 69
Query: 513 LIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTK-ENMHR 689
LIISS++TG+AALDS SGK+G+RAVVYY TT PG K + + R
Sbjct: 70 LIISSMITGVAALDSNVSGKIGLRAVVYYFCTTIIAVILGIILVVSIKPGVTQKMDEIDR 129
Query: 690 EGKIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNV 869
G +++ DA LDLIRNMFP NLV+ACF+Q+KT E+ + + N T V
Sbjct: 130 TGSSPEISTVDAMLDLIRNMFPENLVQACFQQYKTTREEVTPSSEPETNGTEVSVTATMT 189
Query: 870 SEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
+ + T+ E V +G+N LGL+V
Sbjct: 190 TAIFKNKTK---EYKVVGMYSDGINVLGLIV 217
>ref|XP_003128049.1| PREDICTED: excitatory amino acid transporter 5 [Sus scrofa].
Length = 560
Score = 146 bits (368), Expect = 2e-35
Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 11/213 (5%)
Frame = +3
Query: 357 RNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVT 536
RN ++L+V +V VG +LGF LR +S +E+ YF FPGELLMRML+ML+LPL++SSL++
Sbjct: 16 RNGLLILSVLSVTVGCLLGFFLRTRHLSPQEISYFQFPGELLMRMLKMLILPLVVSSLMS 75
Query: 537 GMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHP-GKGTKENMHREGKIVQVT 713
G+A+LD+K S ++G+ V YY+ TT HP G KE + GK + ++
Sbjct: 76 GLASLDAKTSSRLGILTVAYYLWTTFVAVIVGIVMVSIIHPGGAAQKETTGQSGKPI-MS 134
Query: 714 AADAFLDLIRNMFPPNLVEACFKQF--KTNYEKKSFKVPIQPNDTLVGAVINNVSEAMET 887
+AD LDLIRNMFP NLVEA FKQ+ KT KS K + + E
Sbjct: 135 SADPLLDLIRNMFPANLVEATFKQYRTKTTPVVKSPKAASEEAPAARSLIYGVQEENGSR 194
Query: 888 LTRIKEELVP--------VPGSVNGVNALGLVV 962
+ +L P PG+ +G+N LG+V+
Sbjct: 195 VQNFALDLTPPPEVVYKSEPGTSDGMNVLGIVI 227
>ref|XP_003353950.1| PREDICTED: excitatory amino acid transporter 2-like [Sus scrofa].
Length = 565
Score = 140 bits (353), Expect = 1e-33
Identities = 88/210 (41%), Positives = 126/210 (60%), Gaps = 7/210 (3%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 32 LGKNLLLTLTVFGVILGAVCGGFLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 91
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 92 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 151
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAM- 881
+V++ DAFLDLIRN+FP NLV+ACF+Q +T +K P + AVI+ ++E +
Sbjct: 152 EVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSDEDGNATNAVISLLNETVT 211
Query: 882 ----ETLTRIKEELVPVPGSVNGVNALGLV 959
ET IK+ L +G+N LGL+
Sbjct: 212 EGPEETQVVIKKGL----EFKDGMNVLGLI 237
>ref|XP_003353949.1| PREDICTED: excitatory amino acid transporter 2-like, partial [Sus
scrofa].
Length = 243
Score = 136 bits (343), Expect = 2e-32
Identities = 82/188 (43%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 41 LGKNLLLTLTVFGVILGAVCGGFLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 100
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 101 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 160
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAME 884
+V++ DAFLDLIRN+FP NLV+ACF+Q +T +K P + AVI+ ++ E
Sbjct: 161 EVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPSDEDGNATNAVISLLN---E 217
Query: 885 TLTRIKEE 908
T+T EE
Sbjct: 218 TVTEGPEE 225
>ref|XP_003125135.2| PREDICTED: neutral amino acid transporter A-like [Sus scrofa].
Length = 267
Score = 124 bits (311), Expect = 8e-29
Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 7/212 (3%)
Frame = +3
Query: 348 YLFRNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISS 527
+L R+A VLLTV+ V G LG ALR +++ +V Y +FPGE+L+RML+M++LPL++ S
Sbjct: 38 FLRRHALVLLTVSGVAAGAGLGAALRGLRLNRTQVTYLAFPGEMLLRMLRMIILPLVVCS 97
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKE------NMHR 689
LV+G A+LD+ + G++G A+ Y+ TT PG G + +
Sbjct: 98 LVSGAASLDASSLGRLGGIAIAYFGLTTLGASALAVALAFIIKPGSGAQTLQSSDLGLEE 157
Query: 690 EG-KIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINN 866
G V D+FLDL RN+FP NLV A F+ + T+YE+ V +N
Sbjct: 158 SGPPPVPKETVDSFLDLARNLFPSNLVVAAFRTYATSYEE----------------VTHN 201
Query: 867 VSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
S I E +P+ + G+N LGLV+
Sbjct: 202 TSNG-----NITREKIPIGTEIEGMNILGLVL 228
>ref|XP_003133937.2| PREDICTED: excitatory amino acid transporter 1-like [Sus scrofa].
Length = 447
Score = 119 bits (299), Expect = 2e-27
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +3
Query: 219 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 398
MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV
Sbjct: 1 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 60
Query: 399 G 401
G
Sbjct: 61 G 61
Score = 117 bits (294), Expect = 7e-27
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = +3
Query: 786 FKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
FKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV
Sbjct: 95 FKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 153
>ref|XP_003127286.1| PREDICTED: neutral amino acid transporter B(0) isoform 2 [Sus
scrofa].
Length = 496
Score = 110 bits (275), Expect = 1e-24
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 10/222 (4%)
Frame = +3
Query: 327 TKEDVKSYLFRNAFVLLTVTAVIVGTILGFALR----PYKMSYREVKYFSFPGELLMRML 494
+++ V+ L N VLLTV AV+ G LG + + + F+FPGE+L+R+L
Sbjct: 42 SRDQVRRCLRANLLVLLTVVAVVAGVALGLGVSGAGGALALGPARLAAFAFPGEMLLRLL 101
Query: 495 QMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKG-- 668
+M++LPL++ SL+ G A+LD + G++G A+++++ TT PG
Sbjct: 102 KMIILPLVVCSLIGGAASLDPSSLGRLGAWALLFFLVTTLLASALGVGLALAVQPGAAFA 161
Query: 669 -TKENMHREGKIVQVTAA---DAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPN 836
++ G + + + D+FLDL+RN+FP NLV A F+ + T+Y ++ F
Sbjct: 162 AINASVGAPGSVEKAPSKEVLDSFLDLVRNLFPSNLVSAAFRSYATSYSERPFN------ 215
Query: 837 DTLVGAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
G V+ VPV V G+N LGLVV
Sbjct: 216 ----GTVVK----------------VPVGAEVEGMNILGLVV 237
>ref|XP_003127285.1| PREDICTED: neutral amino acid transporter B(0) isoform 1 [Sus
scrofa].
Length = 541
Score = 110 bits (275), Expect = 1e-24
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 10/222 (4%)
Frame = +3
Query: 327 TKEDVKSYLFRNAFVLLTVTAVIVGTILGFALR----PYKMSYREVKYFSFPGELLMRML 494
+++ V+ L N VLLTV AV+ G LG + + + F+FPGE+L+R+L
Sbjct: 42 SRDQVRRCLRANLLVLLTVVAVVAGVALGLGVSGAGGALALGPARLAAFAFPGEMLLRLL 101
Query: 495 QMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKG-- 668
+M++LPL++ SL+ G A+LD + G++G A+++++ TT PG
Sbjct: 102 KMIILPLVVCSLIGGAASLDPSSLGRLGAWALLFFLVTTLLASALGVGLALAVQPGAAFA 161
Query: 669 -TKENMHREGKIVQVTAA---DAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPN 836
++ G + + + D+FLDL+RN+FP NLV A F+ + T+Y ++ F
Sbjct: 162 AINASVGAPGSVEKAPSKEVLDSFLDLVRNLFPSNLVSAAFRSYATSYSERPFN------ 215
Query: 837 DTLVGAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
G V+ VPV V G+N LGLVV
Sbjct: 216 ----GTVVK----------------VPVGAEVEGMNILGLVV 237
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,218,151
Number of extensions: 599298
Number of successful extensions: 1938
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1877
Number of HSP's successfully gapped: 10
Length of query: 321
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,879,129
Effective search space: 1971166638
Effective search space used: 1971166638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008076
(964 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_683740.1| excitatory amino acid transporter 1 [Mus muscul... 431 e-121
Alignment gi|NP_033226.1| excitatory amino acid transporter 4 [Mus muscul... 271 6e-73
Alignment gi|NP_033225.1| excitatory amino acid transporter 3 [Mus muscul... 156 3e-38
Alignment gi|NP_666367.2| excitatory amino acid transporter 5 [Mus muscul... 149 3e-36
Alignment gi|NP_035523.1| excitatory amino acid transporter 2 isoform 3 [... 139 3e-33
Alignment gi|NP_001070982.1| excitatory amino acid transporter 2 isoform ... 139 3e-33
Alignment gi|NP_001070983.1| excitatory amino acid transporter 2 isoform ... 139 3e-33
Alignment gi|NP_061349.3| neutral amino acid transporter A [Mus musculus]. 122 5e-28
Alignment gi|NP_033227.2| neutral amino acid transporter B(0) [Mus muscul... 109 4e-24
>ref|NP_683740.1| excitatory amino acid transporter 1 [Mus musculus].
Length = 543
Score = 431 bits (1108), Expect = e-121
Identities = 222/248 (89%), Positives = 231/248 (93%)
Frame = +3
Query: 219 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 398
MTKSNGEE RMGGRMER QQGVRKRTLLAKKKVQ++TKEDVKSYLFRNAFVLLTVTAVIV
Sbjct: 1 MTKSNGEEPRMGGRMERLQQGVRKRTLLAKKKVQSLTKEDVKSYLFRNAFVLLTVTAVIV 60
Query: 399 GTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 578
GTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG
Sbjct: 61 GTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 120
Query: 579 MRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP 758
MRAVVYYMTTT HPGKGTKENM+REGKIVQVTAADAFLDLIRNMFPP
Sbjct: 121 MRAVVYYMTTTIIAVVIGIIIVIIIHPGKGTKENMYREGKIVQVTAADAFLDLIRNMFPP 180
Query: 759 NLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNG 938
NLVEACFKQFKT+YEK+SFKVPIQ N+TL+GAVINNVSEAMETLTRI+EE+VPVPGSVNG
Sbjct: 181 NLVEACFKQFKTSYEKRSFKVPIQSNETLLGAVINNVSEAMETLTRIREEMVPVPGSVNG 240
Query: 939 VNALGLVV 962
VNALGLVV
Sbjct: 241 VNALGLVV 248
>ref|NP_033226.1| excitatory amino acid transporter 4 [Mus musculus].
Length = 561
Score = 271 bits (693), Expect = 6e-73
Identities = 143/259 (55%), Positives = 181/259 (69%), Gaps = 17/259 (6%)
Frame = +3
Query: 237 EEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIVGTILGF 416
E GG ++ Q +++R L + ++Q +T+E V+ +L RNAF+LLTV+AVI+G L F
Sbjct: 12 ESGAGGGCLQGLQDSLQQRALRTRLRLQTMTREHVRRFLRRNAFILLTVSAVIIGVSLAF 71
Query: 417 ALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMRAVVY 596
ALRPY++SYR++KYFSFPGELLMRMLQMLVLPLI+SSLVTGMA+LD+KA+G+MGMRA VY
Sbjct: 72 ALRPYQLSYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKATGRMGMRAAVY 131
Query: 597 YMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPPNLVEAC 776
YM TT HPGKG+KE +HREG+I V ADAF+DL+RNMFPPNLVEAC
Sbjct: 132 YMVTTVIAVFIGILMVTIIHPGKGSKEGLHREGRIETVPTADAFMDLVRNMFPPNLVEAC 191
Query: 777 FKQFKTNYEKKSFKVPI--QPNDTLVGA-------------VINNVSEAMETLTRI--KE 905
FKQFKT Y + I N + +GA ++ NV+ A+ TL + E
Sbjct: 192 FKQFKTQYSTRVVTRTIVRTDNGSELGASMSPTSSVENETSILENVTRALGTLQEVISFE 251
Query: 906 ELVPVPGSVNGVNALGLVV 962
E VPVPGS NG+NALGLVV
Sbjct: 252 ETVPVPGSANGINALGLVV 270
>ref|NP_033225.1| excitatory amino acid transporter 3 [Mus musculus].
Length = 523
Score = 156 bits (394), Expect = 3e-38
Identities = 91/213 (42%), Positives = 136/213 (63%), Gaps = 4/213 (1%)
Frame = +3
Query: 336 DVKSYLFRNAFVLLTVTAVIVGTILGFALRPY-KMSYREVKYFSFPGELLMRMLQMLVLP 512
D + +L + +L TV AV++G +LG +R + ++S + YF+FPGE+LMRML++++LP
Sbjct: 10 DWRRFLRNHWLLLSTVAAVVLGIVLGVVVRGHSELSNLDKFYFAFPGEILMRMLKLVILP 69
Query: 513 LIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKEN-MHR 689
LI+SS++TG+AALDS SGK+G+RAVVYY +TT PG K N ++R
Sbjct: 70 LIVSSMITGVAALDSNVSGKIGLRAVVYYFSTTVIAVILGIVLVVSIKPGVTQKVNDINR 129
Query: 690 EGKIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQP-NDTLVGAVINN 866
GK +V+ DA LDLIRNMFP NLV+ACF+Q+KT E+ ++P D A +
Sbjct: 130 TGKTPEVSTMDAMLDLIRNMFPENLVQACFQQYKTKREE------VKPVGDPGGNATEVS 183
Query: 867 VSEAMETLTRIKEELVPVPGSV-NGVNALGLVV 962
V+ AM T++ K + + G +G+N LGL++
Sbjct: 184 VTTAMTTMSENKTKEYKIVGLYSDGINVLGLII 216
>ref|NP_666367.2| excitatory amino acid transporter 5 [Mus musculus].
Length = 569
Score = 149 bits (376), Expect = 3e-36
Identities = 92/217 (42%), Positives = 132/217 (60%), Gaps = 16/217 (7%)
Frame = +3
Query: 360 NAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTG 539
N ++L+V +VIVG +LGF LR ++S +E+ YF FPGELLMRML+ML+LPL++SSL++G
Sbjct: 27 NGLLILSVLSVIVGCLLGFFLRTQRLSPQEISYFQFPGELLMRMLKMLILPLVVSSLMSG 86
Query: 540 MAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHP-GKGTKENMHREGKIVQVTA 716
+A+LD+K S ++G+ V YY+ TT HP G KE + GK V +++
Sbjct: 87 LASLDAKTSSRLGILTVAYYLWTTFLAVVVGIIMVSIIHPGGAAQKETTEQSGKPV-MSS 145
Query: 717 ADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGA----VINNVSEAME 884
ADA LDL+RNMFP NLVEA FKQ++T K+ V P A VI V E +
Sbjct: 146 ADALLDLVRNMFPANLVEATFKQYRT----KTTPVIKSPRGAAEEAPRRIVIYGVQE--D 199
Query: 885 TLTRIKE---ELVP--------VPGSVNGVNALGLVV 962
+R++ +L P PG+ +G+N LG+V+
Sbjct: 200 NGSRVQNFALDLTPPPEIVYKSEPGTSDGMNVLGIVI 236
>ref|NP_035523.1| excitatory amino acid transporter 2 isoform 3 [Mus musculus].
Length = 558
Score = 139 bits (351), Expect = 3e-33
Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 38 LGKNLLLSLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 97
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 98 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 157
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAM- 881
+V++ DAFLDLIRN+FP NLV+ACF+Q +T KK P AVI+ ++E M
Sbjct: 158 EVSSLDAFLDLIRNLFPENLVQACFQQIQT-VTKKVLVAPPSEEANTTKAVISMLNETMN 216
Query: 882 ----ETLTRIKEELVPVPGSVNGVNALGLV 959
ET IK+ L +G+N LGL+
Sbjct: 217 EAPEETKIVIKKGL----EFKDGMNVLGLI 242
>ref|NP_001070982.1| excitatory amino acid transporter 2 isoform 1 [Mus musculus].
Length = 572
Score = 139 bits (351), Expect = 3e-33
Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 41 LGKNLLLSLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 100
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 101 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 160
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAM- 881
+V++ DAFLDLIRN+FP NLV+ACF+Q +T KK P AVI+ ++E M
Sbjct: 161 EVSSLDAFLDLIRNLFPENLVQACFQQIQT-VTKKVLVAPPSEEANTTKAVISMLNETMN 219
Query: 882 ----ETLTRIKEELVPVPGSVNGVNALGLV 959
ET IK+ L +G+N LGL+
Sbjct: 220 EAPEETKIVIKKGL----EFKDGMNVLGLI 245
>ref|NP_001070983.1| excitatory amino acid transporter 2 isoform 2 [Mus musculus].
Length = 569
Score = 139 bits (351), Expect = 3e-33
Identities = 90/210 (42%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 38 LGKNLLLSLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 97
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 98 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 157
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAM- 881
+V++ DAFLDLIRN+FP NLV+ACF+Q +T KK P AVI+ ++E M
Sbjct: 158 EVSSLDAFLDLIRNLFPENLVQACFQQIQT-VTKKVLVAPPSEEANTTKAVISMLNETMN 216
Query: 882 ----ETLTRIKEELVPVPGSVNGVNALGLV 959
ET IK+ L +G+N LGL+
Sbjct: 217 EAPEETKIVIKKGL----EFKDGMNVLGLI 242
>ref|NP_061349.3| neutral amino acid transporter A [Mus musculus].
Length = 532
Score = 122 bits (305), Expect = 5e-28
Identities = 76/213 (35%), Positives = 113/213 (53%), Gaps = 7/213 (3%)
Frame = +3
Query: 345 SYLFRNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIIS 524
S+ R+A VLLTV+ V+VG +G ALR +++ ++ Y +FPGE+L+RML+M++LPL++
Sbjct: 37 SFFRRHALVLLTVSGVLVGAGMGAALRGLQLTRTQITYLAFPGEMLLRMLRMIILPLVVC 96
Query: 525 SLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKE------NMH 686
SLV+G A+LD+ + G++G AV Y+ TT PG G + +
Sbjct: 97 SLVSGAASLDASSLGRLGGIAVAYFGLTTLSASALAVALAFIIKPGAGAQTLQSSSLGLE 156
Query: 687 REG-KIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVIN 863
G V D+FLDL+RN+FP NLV A F T+Y V +
Sbjct: 157 NSGPPPVSKETVDSFLDLLRNLFPSNLVVAAFTTSATDYT----------------VVTH 200
Query: 864 NVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
N S + +E +PV V G+N LGLV+
Sbjct: 201 NTSSG-----NVTKEKIPVVTDVEGMNILGLVL 228
>ref|NP_033227.2| neutral amino acid transporter B(0) [Mus musculus].
Length = 555
Score = 109 bits (272), Expect = 4e-24
Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 19/231 (8%)
Frame = +3
Query: 327 TKEDVKSYLFRNAFVLLTVTAVIVGTILGF---------ALRPYKMSYREVKYFSFPGEL 479
+++ V+ + N VLLTV AV+ G LG AL P +++ F+FPGEL
Sbjct: 42 SRDRVRRCIRANLLVLLTVAAVVAGVGLGLGVSAAGGADALGPARLTA-----FAFPGEL 96
Query: 480 LMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHP 659
L+R+L+M++LPL++ SL+ G A+LD A G++G A+++++ TT P
Sbjct: 97 LLRLLKMIILPLVVCSLIGGAASLDPSALGRVGAWALLFFLVTTLLASALGVGLALALKP 156
Query: 660 GKGTKENMHREGKIVQVTA--------ADAFLDLIRNMFPPNLVEACFKQFKTNYEKK-- 809
G +V A D+FLDL+RN+FP NLV A F+ F T+YE K
Sbjct: 157 GAAVTAITSINDSVVDPCARSAPTKEVLDSFLDLVRNIFPSNLVSAAFRSFATSYEPKDN 216
Query: 810 SFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
S K+P + + IN+ +V + V G+N LGLVV
Sbjct: 217 SCKIP----QSCIQREINST-------------MVQLLCEVEGMNILGLVV 250
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,587,494
Number of extensions: 815369
Number of successful extensions: 2614
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2509
Number of HSP's successfully gapped: 9
Length of query: 321
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 220
Effective length of database: 12,583,923
Effective search space: 2768463060
Effective search space used: 2768463060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008076
(964 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160167.1| excitatory amino acid transporter 1 isoform ... 436 e-122
Alignment gi|NP_004163.3| excitatory amino acid transporter 1 isoform 1 [... 436 e-122
Alignment gi|NP_005062.1| excitatory amino acid transporter 4 [Homo sapie... 265 6e-71
Alignment gi|NP_006662.3| excitatory amino acid transporter 5 [Homo sapie... 150 2e-36
Alignment gi|NP_004161.4| excitatory amino acid transporter 3 [Homo sapie... 148 6e-36
Alignment gi|NP_004162.2| excitatory amino acid transporter 2 isoform 1 [... 142 6e-34
Alignment gi|NP_001182657.1| excitatory amino acid transporter 2 isoform ... 142 6e-34
Alignment gi|NP_003029.2| neutral amino acid transporter A isoform 1 [Hom... 122 6e-28
Alignment gi|NP_001160168.1| excitatory amino acid transporter 1 isoform ... 116 3e-26
Alignment gi|NP_005619.1| neutral amino acid transporter B(0) isoform 1 [... 111 1e-24
>ref|NP_001160167.1| excitatory amino acid transporter 1 isoform 2 [Homo sapiens].
Length = 497
Score = 436 bits (1120), Expect = e-122
Identities = 225/248 (90%), Positives = 230/248 (92%)
Frame = +3
Query: 219 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 398
MTKSNGEE +MGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV
Sbjct: 1 MTKSNGEEPKMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 60
Query: 399 GTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 578
GTILGF LRPY+MSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG
Sbjct: 61 GTILGFTLRPYRMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 120
Query: 579 MRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP 758
MRAVVYYMTTT HPGKGTKENMHREGKIV+VTAADAFLDLIRNMFPP
Sbjct: 121 MRAVVYYMTTTIIAVVIGIIIVIIIHPGKGTKENMHREGKIVRVTAADAFLDLIRNMFPP 180
Query: 759 NLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNG 938
NLVEACFKQFKTNYEK+SFKVPIQ N+TLVGAVINNVSEAMETLTRI EELVPVPGSVNG
Sbjct: 181 NLVEACFKQFKTNYEKRSFKVPIQANETLVGAVINNVSEAMETLTRITEELVPVPGSVNG 240
Query: 939 VNALGLVV 962
VNALGLVV
Sbjct: 241 VNALGLVV 248
>ref|NP_004163.3| excitatory amino acid transporter 1 isoform 1 [Homo sapiens].
Length = 542
Score = 436 bits (1120), Expect = e-122
Identities = 225/248 (90%), Positives = 230/248 (92%)
Frame = +3
Query: 219 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 398
MTKSNGEE +MGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV
Sbjct: 1 MTKSNGEEPKMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 60
Query: 399 GTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 578
GTILGF LRPY+MSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG
Sbjct: 61 GTILGFTLRPYRMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMG 120
Query: 579 MRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPP 758
MRAVVYYMTTT HPGKGTKENMHREGKIV+VTAADAFLDLIRNMFPP
Sbjct: 121 MRAVVYYMTTTIIAVVIGIIIVIIIHPGKGTKENMHREGKIVRVTAADAFLDLIRNMFPP 180
Query: 759 NLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNG 938
NLVEACFKQFKTNYEK+SFKVPIQ N+TLVGAVINNVSEAMETLTRI EELVPVPGSVNG
Sbjct: 181 NLVEACFKQFKTNYEKRSFKVPIQANETLVGAVINNVSEAMETLTRITEELVPVPGSVNG 240
Query: 939 VNALGLVV 962
VNALGLVV
Sbjct: 241 VNALGLVV 248
>ref|NP_005062.1| excitatory amino acid transporter 4 [Homo sapiens].
Length = 564
Score = 265 bits (676), Expect = 6e-71
Identities = 140/263 (53%), Positives = 182/263 (69%), Gaps = 17/263 (6%)
Frame = +3
Query: 225 KSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIVGT 404
+ +G+ G ++R Q+ +++R L + ++Q +T E V +L RNAF+LLTV+AV++G
Sbjct: 11 RESGQRLGRVGWLQRLQESLQQRALRTRLRLQTMTLEHVLRFLRRNAFILLTVSAVVIGV 70
Query: 405 ILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMR 584
L FALRPY+++YR++KYFSFPGELLMRMLQMLVLPLI+SSLVTGMA+LD+KA+G+MGMR
Sbjct: 71 SLAFALRPYQLTYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKATGRMGMR 130
Query: 585 AVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKIVQVTAADAFLDLIRNMFPPNL 764
A VYYM TT HPGKG+KE +HREG+I + ADAF+DLIRNMFPPNL
Sbjct: 131 AAVYYMVTTIIAVFIGILMVTIIHPGKGSKEGLHREGRIETIPTADAFMDLIRNMFPPNL 190
Query: 765 VEACFKQFKTNYEKK--SFKVPIQPNDTLVGA-------------VINNVSEAMETLTRI 899
VEACFKQFKT Y + + + N + GA + NV+ A+ TL +
Sbjct: 191 VEACFKQFKTQYSTRVVTRTMVRTENGSEPGASMPPPFSVENGTSFLENVTRALGTLQEM 250
Query: 900 K--EELVPVPGSVNGVNALGLVV 962
EE VPVPGS NG+NALGLVV
Sbjct: 251 LSFEETVPVPGSANGINALGLVV 273
>ref|NP_006662.3| excitatory amino acid transporter 5 [Homo sapiens].
Length = 560
Score = 150 bits (378), Expect = 2e-36
Identities = 86/212 (40%), Positives = 126/212 (59%), Gaps = 11/212 (5%)
Frame = +3
Query: 357 RNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISSLVT 536
RN ++L+V +VIVG +LGF LR ++S +E+ YF FPGELLMRML+M++LPL++SSL++
Sbjct: 16 RNGLLILSVLSVIVGCLLGFFLRTRRLSPQEISYFQFPGELLMRMLKMMILPLVVSSLMS 75
Query: 537 GMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGT-KENMHREGKIVQVT 713
G+A+LD+K S ++G+ V YY+ TT HPG KE + GK + ++
Sbjct: 76 GLASLDAKTSSRLGVLTVAYYLWTTFMAVIVGIFMVSIIHPGSAAQKETTEQSGKPI-MS 134
Query: 714 AADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDT------LVGAVINNVSE 875
+ADA LDLIRNMFP NLVEA FKQ++T + P + + G N S
Sbjct: 135 SADALLDLIRNMFPANLVEATFKQYRTKTTPVVKSPKVAPEEAPPRRILIYGVQEENGSH 194
Query: 876 ----AMETLTRIKEELVPVPGSVNGVNALGLV 959
A++ + PG+ +G+N LG+V
Sbjct: 195 VQNFALDLTPPPEVVYKSEPGTSDGMNVLGIV 226
>ref|NP_004161.4| excitatory amino acid transporter 3 [Homo sapiens].
Length = 524
Score = 148 bits (374), Expect = 6e-36
Identities = 89/209 (42%), Positives = 123/209 (58%), Gaps = 2/209 (0%)
Frame = +3
Query: 342 KSYLFRNAFVLLTVTAVIVGTILGFALRPYK-MSYREVKYFSFPGELLMRMLQMLVLPLI 518
K +L N +L TV AV++G G +R + +S E YF+FPGE+LMRML++++LPLI
Sbjct: 12 KRFLKNNWVLLSTVAAVVLGITTGVLVREHSNLSTLEKFYFAFPGEILMRMLKLIILPLI 71
Query: 519 ISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTK-ENMHREG 695
ISS++TG+AALDS SGK+G+RAVVYY TT PG K + R G
Sbjct: 72 ISSMITGVAALDSNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTG 131
Query: 696 KIVQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSE 875
+V+ DA LDLIRNMFP NLV+ACF+Q+KT +++ K P P + V
Sbjct: 132 STPEVSTVDAMLDLIRNMFPENLVQACFQQYKT--KREEVKPPSDPEMNMTEESFTAVMT 189
Query: 876 AMETLTRIKEELVPVPGSVNGVNALGLVV 962
+ + KE + V +G+N LGL+V
Sbjct: 190 TAISKNKTKEYKI-VGMYSDGINVLGLIV 217
>ref|NP_004162.2| excitatory amino acid transporter 2 isoform 1 [Homo sapiens].
Length = 574
Score = 142 bits (357), Expect = 6e-34
Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 6/209 (2%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 41 LGKNLLLTLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 100
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 101 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 160
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAME 884
+V++ DAFLDLIRN+FP NLV+ACF+Q +T KK P P D A VS E
Sbjct: 161 EVSSLDAFLDLIRNLFPENLVQACFQQIQT-VTKKVLVAP--PPDEEANATSAVVSLLNE 217
Query: 885 TLTRIKEELVPVPGS----VNGVNALGLV 959
T+T + EE V +G+N LGL+
Sbjct: 218 TVTEVPEETKMVIKKGLEFKDGMNVLGLI 246
>ref|NP_001182657.1| excitatory amino acid transporter 2 isoform 2 [Homo sapiens].
Length = 565
Score = 142 bits (357), Expect = 6e-34
Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 6/209 (2%)
Frame = +3
Query: 351 LFRNAFVLLTVTAVIVGTILGFALRPYKMSYREV-KYFSFPGELLMRMLQMLVLPLIISS 527
L +N + LTV VI+G + G LR + +V +FPG++LMRML+ML+LPLIISS
Sbjct: 32 LGKNLLLTLTVFGVILGAVCGGLLRLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISS 91
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGK-GTKENMHREGKIV 704
L+TG++ LD+KASG++G RA+VYYM+TT HPG K+ + K
Sbjct: 92 LITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKND 151
Query: 705 QVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINNVSEAME 884
+V++ DAFLDLIRN+FP NLV+ACF+Q +T KK P P D A VS E
Sbjct: 152 EVSSLDAFLDLIRNLFPENLVQACFQQIQT-VTKKVLVAP--PPDEEANATSAVVSLLNE 208
Query: 885 TLTRIKEELVPVPGS----VNGVNALGLV 959
T+T + EE V +G+N LGL+
Sbjct: 209 TVTEVPEETKMVIKKGLEFKDGMNVLGLI 237
>ref|NP_003029.2| neutral amino acid transporter A isoform 1 [Homo sapiens].
Length = 532
Score = 122 bits (305), Expect = 6e-28
Identities = 75/212 (35%), Positives = 109/212 (51%), Gaps = 7/212 (3%)
Frame = +3
Query: 348 YLFRNAFVLLTVTAVIVGTILGFALRPYKMSYREVKYFSFPGELLMRMLQMLVLPLIISS 527
+L R A VLLTV+ V+ G LG ALR +S +V Y +FPGE+L+RML+M++LPL++ S
Sbjct: 38 FLRRQALVLLTVSGVLAGAGLGAALRGLSLSRTQVTYLAFPGEMLLRMLRMIILPLVVCS 97
Query: 528 LVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHPGKGTKENMHREGKI-- 701
LV+G A+LD+ G++G AV Y+ TT PG G + + +
Sbjct: 98 LVSGAASLDASCLGRLGGIAVAYFGLTTLSASALAVALAFIIKPGSGAQTLQSSDLGLED 157
Query: 702 -----VQVTAADAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKVPIQPNDTLVGAVINN 866
V D+FLDL RN+FP NLV A F+ + T+Y+ V N
Sbjct: 158 SGPPPVPKETVDSFLDLARNLFPSNLVVAAFRTYATDYK----------------VVTQN 201
Query: 867 VSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
S + E +P+ + G+N LGLV+
Sbjct: 202 SSSG-----NVTHEKIPIGTEIEGMNILGLVL 228
>ref|NP_001160168.1| excitatory amino acid transporter 1 isoform 3 [Homo sapiens].
Length = 65
Score = 116 bits (291), Expect = 3e-26
Identities = 59/61 (96%), Positives = 60/61 (98%)
Frame = +3
Query: 219 MTKSNGEEARMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 398
MTKSNGEE +MGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV
Sbjct: 1 MTKSNGEEPKMGGRMERFQQGVRKRTLLAKKKVQNITKEDVKSYLFRNAFVLLTVTAVIV 60
Query: 399 G 401
G
Sbjct: 61 G 61
>ref|NP_005619.1| neutral amino acid transporter B(0) isoform 1 [Homo sapiens].
Length = 541
Score = 111 bits (277), Expect = 1e-24
Identities = 78/227 (34%), Positives = 111/227 (48%), Gaps = 15/227 (6%)
Frame = +3
Query: 327 TKEDVKSYLFRNAFVLLTVTAVIVGTILGF---------ALRPYKMSYREVKYFSFPGEL 479
+++ V+ L N VLLTV AV+ G LG AL P ++S F FPGEL
Sbjct: 41 SRDQVRRCLRANLLVLLTVVAVVAGVALGLGVSGAGGALALGPERLSA-----FVFPGEL 95
Query: 480 LMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTXXXXXXXXXXXXXXHP 659
L+R+L+M++LPL++ SL+ G A+LD A G++G A+++++ TT P
Sbjct: 96 LLRLLRMIILPLVVCSLIGGAASLDPGALGRLGAWALLFFLVTTLLASALGVGLALALQP 155
Query: 660 GKGTKENMHREGKIVQVTAA------DAFLDLIRNMFPPNLVEACFKQFKTNYEKKSFKV 821
G + G A D+FLDL RN+FP NLV A F+ + T YE+++
Sbjct: 156 GAASAAINASVGAAGSAENAPSKEVLDSFLDLARNIFPSNLVSAAFRSYSTTYEERNI-- 213
Query: 822 PIQPNDTLVGAVINNVSEAMETLTRIKEELVPVPGSVNGVNALGLVV 962
T TR+K VPV V G+N LGLVV
Sbjct: 214 ---------------------TGTRVK---VPVGQEVEGMNILGLVV 236
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,108,919
Number of extensions: 956328
Number of successful extensions: 3060
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2966
Number of HSP's successfully gapped: 10
Length of query: 321
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 218
Effective length of database: 14,901,872
Effective search space: 3248608096
Effective search space used: 3248608096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008076
(964 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 549 e-154
Sscrofa_Chr02 98 1e-17
>Sscrofa_Chr16
|| Length = 86898991
Score = 549 bits (277), Expect = e-154
Identities = 277/277 (100%)
Strand = Plus / Plus
Query: 126 agttgtgttctttaacaccaaagaggactggctttctggggctgattctgtgacattgga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22926379 agttgtgttctttaacaccaaagaggactggctttctggggctgattctgtgacattgga 22926438
Query: 186 attcaaagaagagacgctccagagaaatacgctatgacgaaaagcaatggagaagaggcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22926439 attcaaagaagagacgctccagagaaatacgctatgacgaaaagcaatggagaagaggcc 22926498
Query: 246 aggatggggggcaggatggagagattccagcaaggagtccgtaaacgcacactcttggct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22926499 aggatggggggcaggatggagagattccagcaaggagtccgtaaacgcacactcttggct 22926558
Query: 306 aagaagaaagtgcagaacatcacaaaggaggatgttaaaagttacctatttcggaatgct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22926559 aagaagaaagtgcagaacatcacaaaggaggatgttaaaagttacctatttcggaatgct 22926618
Query: 366 tttgtgctgctcactgtcaccgccgtcattgtgggta 402
|||||||||||||||||||||||||||||||||||||
Sbjct: 22926619 tttgtgctgctcactgtcaccgccgtcattgtgggta 22926655
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 535 caggaatggcggccctagatagtaaggcgtcagggaagatggggatgcgagccgtagtct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22989857 caggaatggcggccctagatagtaaggcgtcagggaagatggggatgcgagccgtagtct 22989916
Query: 595 attacatgactaccaccgtcattgccgtggtgattggcataatcattgtcatcatcatcc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22989917 attacatgactaccaccgtcattgccgtggtgattggcataatcattgtcatcatcatcc 22989976
Query: 655 atcctgggaagggcacaaaggaaaacatgcacagagaaggcaaaattgtacaagtgacag 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22989977 atcctgggaagggcacaaaggaaaacatgcacagagaaggcaaaattgtacaagtgacag 22990036
Query: 715 ctgcagacgccttcctggacttgatcagg 743
|||||||||||||||||||||||||||||
Sbjct: 22990037 ctgcagacgccttcctggacttgatcagg 22990065
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 784 agtttaaaaccaactatgagaagaaaagctttaaagtgcccatccaacccaatgacacac 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22994637 agtttaaaaccaactatgagaagaaaagctttaaagtgcccatccaacccaatgacacac 22994696
Query: 844 ttgtgggcgccgtgataaacaatgtgtccgaggccatggagacgctgacgaggatcaagg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22994697 ttgtgggcgccgtgataaacaatgtgtccgaggccatggagacgctgacgaggatcaagg 22994756
Query: 904 aggagttagtcccagtcccagggtctgtgaacggggtcaatgccttgggactcgttgtct 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22994757 aggagttagtcccagtcccagggtctgtgaacggggtcaatgccttgggactcgttgtct 22994816
Query: 964 t 964
|
Sbjct: 22994817 t 22994817
Score = 278 bits (140), Expect = 5e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 399 ggtacaatccttgggtttgccctgcgaccatacaaaatgagctaccgggaagtcaagtac 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22948707 ggtacaatccttgggtttgccctgcgaccatacaaaatgagctaccgggaagtcaagtac 22948766
Query: 459 ttctcctttcctggggagcttctgatgaggatgctacagatgctggtgttaccactcatc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22948767 ttctcctttcctggggagcttctgatgaggatgctacagatgctggtgttaccactcatc 22948826
Query: 519 atctccagtcttgtcacagg 538
||||||||||||||||||||
Sbjct: 22948827 atctccagtcttgtcacagg 22948846
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 1 atagtaatttgcagtttcagagcacatgcacgccttgctcgctgcgttttgttgctccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22924641 atagtaatttgcagtttcagagcacatgcacgccttgctcgctgcgttttgttgctccgc 22924700
Query: 61 tgtacctgctgggaattcaccttgtcattgcctggggtatcttccacccgccacaaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22924701 tgtacctgctgggaattcaccttgtcattgcctggggtatcttccacccgccacaaaatc 22924760
Query: 121 agaaaag 127
|||||||
Sbjct: 22924761 agaaaag 22924767
>Sscrofa_Chr02
|| Length = 162569375
Score = 97.6 bits (49), Expect = 1e-17
Identities = 106/125 (84%)
Strand = Plus / Plus
Query: 414 tttgccctgcgaccatacaaaatgagctaccgggaagtcaagtacttctcctttcctggg 473
||||||||||| |||||| | | |||||||| | |||||||||| || ||||||||
Sbjct: 62168478 tttgccctgcgcccataccagctcagctaccgccagatcaagtacttttcttttcctgga 62168537
Query: 474 gagcttctgatgaggatgctacagatgctggtgttaccactcatcatctccagtcttgtc 533
|||||||| ||||||||||| |||||||||||| | |||||||| |||||||||| |||
Sbjct: 62168538 gagcttctcatgaggatgctgcagatgctggtgctgccactcattgtctccagtctggtc 62168597
Query: 534 acagg 538
|||||
Sbjct: 62168598 acagg 62168602
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,084,885
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 6
Length of query: 964
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 943
Effective length of database: 2,808,413,156
Effective search space: 2648333606108
Effective search space used: 2648333606108
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)