Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008083
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069746.1| fucose mutarotase [Bos taurus]. 245 5e-65
>ref|NP_001069746.1| fucose mutarotase [Bos taurus].
Length = 153
Score = 245 bits (625), Expect = 5e-65
Identities = 127/150 (84%), Positives = 136/150 (90%)
Frame = +2
Query: 29 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCKCGPEEIRADGLGIPQLLE 208
MV LKG+PALLSPELL+ALARMGHGDEIVLADVNFP+SS+C+ GPEEIRADGLGIPQLLE
Sbjct: 1 MVVLKGVPALLSPELLFALARMGHGDEIVLADVNFPSSSICRGGPEEIRADGLGIPQLLE 60
Query: 209 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY 388
AVL LLPLDTYV+SPA VMELVPSDR+ GL TPVWTSYQSIL +AG SL + RF FY
Sbjct: 61 AVLQLLPLDTYVQSPAMVMELVPSDRKSGLLTPVWTSYQSILSRAGYEFSL-GMGRFAFY 119
Query: 389 ERAKKAFAVVATGETALYGNLILKKGVLAP 478
ERAKKAFAVVATGETALYGNLILKKGVLAP
Sbjct: 120 ERAKKAFAVVATGETALYGNLILKKGVLAP 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,066,839
Number of extensions: 1679733
Number of successful extensions: 9303
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9151
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008083
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548817.1| PREDICTED: hypothetical protein XP_548817 [Cani... 232 5e-61
>ref|XP_548817.1| PREDICTED: hypothetical protein XP_548817 [Canis familiaris].
Length = 133
Score = 232 bits (591), Expect = 5e-61
Identities = 114/133 (85%), Positives = 122/133 (91%)
Frame = +2
Query: 29 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCKCGPEEIRADGLGIPQLLE 208
MV LKG+PALLSPELLYALARMGHGDEIVLADVNFPTSS+CKCGPEE+RADGLGIP LLE
Sbjct: 1 MVVLKGVPALLSPELLYALARMGHGDEIVLADVNFPTSSICKCGPEELRADGLGIPPLLE 60
Query: 209 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY 388
AVL LLPLDTYVESPAAVMELVPSD++RGLQTPVW +YQSIL AGC +L +ERF FY
Sbjct: 61 AVLQLLPLDTYVESPAAVMELVPSDKKRGLQTPVWGTYQSILSGAGCGGALATVERFAFY 120
Query: 389 ERAKKAFAVVATG 427
ERAKKAFAVVATG
Sbjct: 121 ERAKKAFAVVATG 133
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,090,904
Number of extensions: 1737065
Number of successful extensions: 9677
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9462
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008083
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927852.1| PREDICTED: fucose mutarotase isoform 1 [Sus ... 308 4e-84
Alignment gi|XP_003133293.1| PREDICTED: fucose mutarotase isoform 2 [Sus ... 302 2e-82
Alignment gi|XP_003362050.1| PREDICTED: fucose mutarotase-like [Sus scrof... 242 3e-64
>ref|XP_001927852.1| PREDICTED: fucose mutarotase isoform 1 [Sus scrofa].
Length = 157
Score = 308 bits (788), Expect = 4e-84
Identities = 156/157 (99%), Positives = 157/157 (100%)
Frame = +2
Query: 29 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCKCGPEEIRADGLGIPQLLE 208
MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVC+CGPEEIRADGLGIPQLLE
Sbjct: 1 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCRCGPEEIRADGLGIPQLLE 60
Query: 209 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY 388
AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY
Sbjct: 61 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY 120
Query: 389 ERAKKAFAVVATGETALYGNLILKKGVLAPGALSQAC 499
ERAKKAFAVVATGETALYGNLILKKGVLAPGALSQAC
Sbjct: 121 ERAKKAFAVVATGETALYGNLILKKGVLAPGALSQAC 157
>ref|XP_003133293.1| PREDICTED: fucose mutarotase isoform 2 [Sus scrofa].
Length = 160
Score = 302 bits (774), Expect = 2e-82
Identities = 156/160 (97%), Positives = 157/160 (98%), Gaps = 3/160 (1%)
Frame = +2
Query: 29 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCKCGPEEIRADGLGIPQLLE 208
MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVC+CGPEEIRADGLGIPQLLE
Sbjct: 1 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCRCGPEEIRADGLGIPQLLE 60
Query: 209 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCT---SSLTAIERF 379
AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCT SSLTAIERF
Sbjct: 61 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTTSQSSLTAIERF 120
Query: 380 EFYERAKKAFAVVATGETALYGNLILKKGVLAPGALSQAC 499
EFYERAKKAFAVVATGETALYGNLILKKGVLAPGALSQAC
Sbjct: 121 EFYERAKKAFAVVATGETALYGNLILKKGVLAPGALSQAC 160
>ref|XP_003362050.1| PREDICTED: fucose mutarotase-like [Sus scrofa].
Length = 244
Score = 242 bits (617), Expect = 3e-64
Identities = 122/129 (94%), Positives = 124/129 (96%)
Frame = +2
Query: 113 VLADVNFPTSSVCKCGPEEIRADGLGIPQLLEAVLTLLPLDTYVESPAAVMELVPSDRER 292
VLADVNFPTSSVC+CGP + GLGIPQLLEAVLTLLPLDTYVESPAAVMELVPSDRER
Sbjct: 116 VLADVNFPTSSVCRCGPLALHPSGLGIPQLLEAVLTLLPLDTYVESPAAVMELVPSDRER 175
Query: 293 GLQTPVWTSYQSILLQAGCTSSLTAIERFEFYERAKKAFAVVATGETALYGNLILKKGVL 472
GLQTPVWTSYQSILLQAGCTSSLTAIERFEFYERAKKAFAVVATGETALYGNLILKKGVL
Sbjct: 176 GLQTPVWTSYQSILLQAGCTSSLTAIERFEFYERAKKAFAVVATGETALYGNLILKKGVL 235
Query: 473 APGALSQAC 499
APGALSQAC
Sbjct: 236 APGALSQAC 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,539,595
Number of extensions: 1096485
Number of successful extensions: 6342
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6175
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008083
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081204.2| fucose mutarotase [Mus musculus]. 247 1e-65
>ref|NP_081204.2| fucose mutarotase [Mus musculus].
Length = 153
Score = 247 bits (630), Expect = 1e-65
Identities = 121/151 (80%), Positives = 135/151 (89%)
Frame = +2
Query: 29 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCKCGPEEIRADGLGIPQLLE 208
MVALKGIP +LSPELL+ALARMGHGDEIVLAD NFPTSS+C+CGP EIRADGL IPQLLE
Sbjct: 1 MVALKGIPKVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPVEIRADGLDIPQLLE 60
Query: 209 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY 388
AVL LLPLDTYVESPAAVM+LVPSD+E+GLQTP+W Y+S+LL+A C +L +ERFEFY
Sbjct: 61 AVLRLLPLDTYVESPAAVMDLVPSDKEKGLQTPIWKRYESLLLEADCKKTLMKLERFEFY 120
Query: 389 ERAKKAFAVVATGETALYGNLILKKGVLAPG 481
ERAKKAFAVVATGE ALYGN+ILKKG L G
Sbjct: 121 ERAKKAFAVVATGEMALYGNIILKKGTLDLG 151
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,934,004
Number of extensions: 1352397
Number of successful extensions: 6823
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6681
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008083
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091953.1| fucose mutarotase isoform 1 [Homo sapiens]. 264 9e-71
Alignment gi|NP_940874.2| fucose mutarotase isoform 2 [Homo sapiens]. 236 3e-62
>ref|NP_001091953.1| fucose mutarotase isoform 1 [Homo sapiens].
Length = 154
Score = 264 bits (675), Expect = 9e-71
Identities = 131/149 (87%), Positives = 140/149 (93%)
Frame = +2
Query: 29 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCKCGPEEIRADGLGIPQLLE 208
MVALKG+PALLSPELLYALARMGHGDEIVLAD+NFP SS+C+CGP EIRADGLGIPQLLE
Sbjct: 1 MVALKGVPALLSPELLYALARMGHGDEIVLADLNFPASSICQCGPMEIRADGLGIPQLLE 60
Query: 209 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY 388
AVL LLPLDTYVESPAAVMELVPSD+ERGLQTPVWT Y+SIL +AGC +L IERFEFY
Sbjct: 61 AVLKLLPLDTYVESPAAVMELVPSDKERGLQTPVWTEYESILRRAGCVRALAKIERFEFY 120
Query: 389 ERAKKAFAVVATGETALYGNLILKKGVLA 475
ERAKKAFAVVATGETALYGNLIL+KGVLA
Sbjct: 121 ERAKKAFAVVATGETALYGNLILRKGVLA 149
>ref|NP_940874.2| fucose mutarotase isoform 2 [Homo sapiens].
Length = 134
Score = 236 bits (601), Expect = 3e-62
Identities = 116/133 (87%), Positives = 124/133 (93%)
Frame = +2
Query: 29 MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCKCGPEEIRADGLGIPQLLE 208
MVALKG+PALLSPELLYALARMGHGDEIVLAD+NFP SS+C+CGP EIRADGLGIPQLLE
Sbjct: 1 MVALKGVPALLSPELLYALARMGHGDEIVLADLNFPASSICQCGPMEIRADGLGIPQLLE 60
Query: 209 AVLTLLPLDTYVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFY 388
AVL LLPLDTYVESPAAVMELVPSD+ERGLQTPVWT Y+SIL +AGC +L IERFEFY
Sbjct: 61 AVLKLLPLDTYVESPAAVMELVPSDKERGLQTPVWTEYESILRRAGCVRALAKIERFEFY 120
Query: 389 ERAKKAFAVVATG 427
ERAKKAFAVVATG
Sbjct: 121 ERAKKAFAVVATG 133
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,810,604
Number of extensions: 1664418
Number of successful extensions: 9032
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8850
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008083
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1098 0.0
gb|JH118992.1| Sus scrofa unplaced genomic scaffold ChrUScaf4126 555 e-155
>Sscrofa_Chr14
|| Length = 153851969
Score = 1098 bits (554), Expect = 0.0
Identities = 592/601 (98%), Gaps = 4/601 (0%)
Strand = Plus / Plus
Query: 426 gggagacggccctctacggaaacctcatcctcaagaagggggtgctggcgcccggcgccc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153791894 gggagacggccctctacggaaacctcatcctcaagaagggggtgctggcgcccggcgccc 153791953
Query: 486 tgtcccaggcctgttgaccgtctgcccggagaggagtctggaccctgggcctgacagcac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153791954 tgtcccaggcctgttgaccgtctgcccggagaggagtctggaccctgggcctgacagcac 153792013
Query: 546 caccagcaggcaggtccagcgtccagatgaaccggccttgctctgcctgtcagcacggga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153792014 caccagcaggcaggtccagcgtccagatgaaccggccttgctctgcctgtcagcacggga 153792073
Query: 606 acctcacccagccaggggctccggggccagtgggtttgctgactgggctggggttgtccc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153792074 acctcacccagccaggggctccggggccagtgggtttgctgactgggctggggttgtccc 153792133
Query: 666 agtttatgaaaacaagggacgagcacagtgacttgccagcgttcagtccaaaggtttcaa 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153792134 agtttatgaaaacaagggacgagcacagtgacttgccagcgttcagtccaaaggtttcaa 153792193
Query: 726 cagcagctcaccctaactccccaaggcctgtgggggcgggtgcaacggaggccaccggcc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153792194 cagcagctcaccctaactccccaaggcctgtgggggcgggtgcaacggaggccaccggcc 153792253
Query: 786 cccagagagagggccccacccactctccacggatcccgcctcccgcaagctctgggccgc 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153792254 cccagagagagggccccacccactctccacggatcccgcctcccgcaagctctgggccgc 153792313
Query: 846 ctgacgtggcaagaccctgggtttgggataacagttcttacaggtagacaccctcgtgca 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153792314 ctgacgtggcaagaccctgggtttgggataacagttcttacaggtagacaccctcgtgca 153792373
Query: 906 gggtggtcgcgcagcggcccaaagggaggtctgggggcctggctggggccgga-gtggaa 964
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 153792374 gggtggtcgcgcagcggcccagagggaggtctgggggcctggctggggccggaggtgaag 153792433
Query: 965 cggcggggggtcatcccagctcccgt-cctgcagggggctggag--aggtgtgtcagccc 1021
|||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||
Sbjct: 153792434 cggcggggggtcatcccagctcccgtccctgcaggggcctggaggagggtgtgtcagccc 153792493
Query: 1022 c 1022
|
Sbjct: 153792494 c 153792494
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 10 tcttccacccgccgcgagcatggtggcgctgaagggcatccccgcgctgctgtccccgga 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153788725 tcttccacccgccgcgagcatggtggcgctgaagggcatccccgcgctgctgtccccgga 153788784
Query: 70 gctgctctacgccctggcgcgaatggggcacggagatgagatcg 113
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153788785 gctgctctacgccctggcgcgaatggggcacggagatgagatcg 153788828
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 253 ggctgcggtcatggagctggtgcccagtgacagggagaggggcctgcagaccccagtgtg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153790979 ggctgcggtcatggagctggtgcccagtgacagggagaggggcctgcagaccccagtgtg 153791038
Query: 313 gacaagctaccagtccatcctgctccaggctggctgcacg 352
||||||||||||||||||||||||||||||||||||||||
Sbjct: 153791039 gacaagctaccagtccatcctgctccaggctggctgcacg 153791078
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 352 gagctccctgacggcgatagagaggtttgagttttacgaaagggccaaaaaggcttttgc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153791592 gagctccctgacggcgatagagaggtttgagttttacgaaagggccaaaaaggcttttgc 153791651
Query: 412 tgttgtggcaactggg 427
||||||||||||||||
Sbjct: 153791652 tgttgtggcaactggg 153791667
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 182 ggcctgggcatccctcagctgctggaggccgtgctgacactgctaccactggacacgtac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153790714 ggcctgggcatccctcagctgctggaggccgtgctgacactgctaccactggacacgtac 153790773
Query: 242 gtggagagcccgg 254
|||||||||||||
Sbjct: 153790774 gtggagagcccgg 153790786
Score = 133 bits (67), Expect = 2e-28
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 113 gtccttgcagatgtgaacttccccacgtcctccgtctgcaagtgtggcccggaggagatc 172
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 153789473 gtccttgcagatgtgaacttccccacgtcctccgtctgcaggtgtggcccggaggagatc 153789532
Query: 173 cgcgctgacgg 183
|||||||||||
Sbjct: 153789533 cgcgctgacgg 153789543
>gb|JH118992.1| Sus scrofa unplaced genomic scaffold ChrUScaf4126
Length = 36609
Score = 555 bits (280), Expect = e-155
Identities = 280/280 (100%)
Strand = Plus / Plus
Query: 426 gggagacggccctctacggaaacctcatcctcaagaagggggtgctggcgcccggcgccc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30007 gggagacggccctctacggaaacctcatcctcaagaagggggtgctggcgcccggcgccc 30066
Query: 486 tgtcccaggcctgttgaccgtctgcccggagaggagtctggaccctgggcctgacagcac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30067 tgtcccaggcctgttgaccgtctgcccggagaggagtctggaccctgggcctgacagcac 30126
Query: 546 caccagcaggcaggtccagcgtccagatgaaccggccttgctctgcctgtcagcacggga 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30127 caccagcaggcaggtccagcgtccagatgaaccggccttgctctgcctgtcagcacggga 30186
Query: 606 acctcacccagccaggggctccggggccagtgggtttgctgactgggctggggttgtccc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30187 acctcacccagccaggggctccggggccagtgggtttgctgactgggctggggttgtccc 30246
Query: 666 agtttatgaaaacaagggacgagcacagtgacttgccagc 705
||||||||||||||||||||||||||||||||||||||||
Sbjct: 30247 agtttatgaaaacaagggacgagcacagtgacttgccagc 30286
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 253 ggctgcggtcatggagctggtgcccagtgacagggagaggggcctgcagaccccagtgtg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28889 ggctgcggtcatggagctggtgcccagtgacagggagaggggcctgcagaccccagtgtg 28948
Query: 313 gacaagctaccagtccatcctgctccaggctggctgcacg 352
||||||||||||||||||||||||||||||||||||||||
Sbjct: 28949 gacaagctaccagtccatcctgctccaggctggctgcacg 28988
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 352 gagctccctgacggcgatagagaggtttgagttttacgaaagggccaaaaaggcttttgc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29705 gagctccctgacggcgatagagaggtttgagttttacgaaagggccaaaaaggcttttgc 29764
Query: 412 tgttgtggcaactggg 427
||||||||||||||||
Sbjct: 29765 tgttgtggcaactggg 29780
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 182 ggcctgggcatccctcagctgctggaggccgtgctgacactgctaccactggacacgtac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28624 ggcctgggcatccctcagctgctggaggccgtgctgacactgctaccactggacacgtac 28683
Query: 242 gtggagagcccgg 254
|||||||||||||
Sbjct: 28684 gtggagagcccgg 28696
Score = 111 bits (56), Expect = 8e-22
Identities = 91/99 (91%), Gaps = 4/99 (4%)
Strand = Plus / Plus
Query: 928 agggaggtctgggggcctggctggggccgga-gtggaacggcggggggtcatcccagctc 986
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 30389 agggaggtctgggggcctggctggggccggaggtgaagcggcggggggtcatcccagctc 30448
Query: 987 ccgt-cctgcagggggctggag--aggtgtgtcagcccc 1022
|||| |||||||||| |||||| ||||||||||||||
Sbjct: 30449 ccgtccctgcaggggcctggaggagggtgtgtcagcccc 30487
Score = 97.6 bits (49), Expect = 1e-17
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 113 gtccttgcagatgtgaacttccccacgtcctccgtctgcaagtgtggcccgga 165
|||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 27175 gtccttgcagatgtgaacttccccacgtcctccgtctgcaggtgtggcccgga 27227
Score = 69.9 bits (35), Expect = 3e-09
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 10 tcttccacccgccgcgagcatggtggcgctgaagggcat 48
||||||||||||||||||||||| |||||||||||||||
Sbjct: 26417 tcttccacccgccgcgagcatgggggcgctgaagggcat 26455
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,324,568
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 13
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)