Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008086
(1014 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068814.1| DNA methyltransferase 1-associated protein 1... 440 e-123
>ref|NP_001068814.1| DNA methyltransferase 1-associated protein 1 [Bos taurus].
Length = 468
Score = 440 bits (1131), Expect = e-123
Identities = 214/234 (91%), Positives = 214/234 (91%)
Frame = +2
Query: 311 MATGADVRDILELGGPEGDAASGTXXXXXXXXXXXXXXXXXXETLTFKRPEGMHREVYAL 490
MATGADVRDILELGGPEGDAASGT ETLTFKRPEGMHREVYAL
Sbjct: 1 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL 60
Query: 491 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 670
LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
Sbjct: 61 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 120
Query: 671 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 850
GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
Sbjct: 121 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 180
Query: 851 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPGVDAGHERRRKEQLERLY 1012
QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP DAGHERRRKEQLERLY
Sbjct: 181 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLY 234
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,937,266
Number of extensions: 1175107
Number of successful extensions: 7751
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7425
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008086
(1014 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532609.2| PREDICTED: similar to DNMT1 associated protein-... 448 e-126
>ref|XP_532609.2| PREDICTED: similar to DNMT1 associated protein-1 [Canis familiaris].
Length = 501
Score = 448 bits (1153), Expect = e-126
Identities = 219/240 (91%), Positives = 219/240 (91%)
Frame = +2
Query: 293 PHLSGAMATGADVRDILELGGPEGDAASGTXXXXXXXXXXXXXXXXXXETLTFKRPEGMH 472
P LSGAMATGADVRDILELGGPEGDAASGT ETLTFKRPEGMH
Sbjct: 28 PLLSGAMATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMH 87
Query: 473 REVYALLYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHW 652
REVYALLYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHW
Sbjct: 88 REVYALLYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHW 147
Query: 653 RRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVI 832
RRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVI
Sbjct: 148 RRAAEEGKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVI 207
Query: 833 HDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPGVDAGHERRRKEQLERLY 1012
HDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP DAGHERRRKEQLERLY
Sbjct: 208 HDRYDHQQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLY 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,673,651
Number of extensions: 1209375
Number of successful extensions: 7797
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7498
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008086
(1014 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230569.1| DNA methyltransferase 1 associated protein 1... 440 e-124
>ref|NP_001230569.1| DNA methyltransferase 1 associated protein 1 [Sus scrofa].
Length = 468
Score = 440 bits (1131), Expect = e-124
Identities = 214/234 (91%), Positives = 214/234 (91%)
Frame = +2
Query: 311 MATGADVRDILELGGPEGDAASGTXXXXXXXXXXXXXXXXXXETLTFKRPEGMHREVYAL 490
MATGADVRDILELGGPEGDAASGT ETLTFKRPEGMHREVYAL
Sbjct: 1 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL 60
Query: 491 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 670
LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
Sbjct: 61 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 120
Query: 671 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 850
GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
Sbjct: 121 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 180
Query: 851 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPGVDAGHERRRKEQLERLY 1012
QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP DAGHERRRKEQLERLY
Sbjct: 181 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLY 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,211,948
Number of extensions: 763985
Number of successful extensions: 5245
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4952
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008086
(1014 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075667.1| DNA methyltransferase 1-associated protein 1 [M... 440 e-123
>ref|NP_075667.1| DNA methyltransferase 1-associated protein 1 [Mus musculus].
Length = 468
Score = 440 bits (1131), Expect = e-123
Identities = 214/234 (91%), Positives = 214/234 (91%)
Frame = +2
Query: 311 MATGADVRDILELGGPEGDAASGTXXXXXXXXXXXXXXXXXXETLTFKRPEGMHREVYAL 490
MATGADVRDILELGGPEGDAASGT ETLTFKRPEGMHREVYAL
Sbjct: 1 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL 60
Query: 491 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 670
LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
Sbjct: 61 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 120
Query: 671 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 850
GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
Sbjct: 121 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 180
Query: 851 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPGVDAGHERRRKEQLERLY 1012
QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP DAGHERRRKEQLERLY
Sbjct: 181 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLY 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,231,724
Number of extensions: 958439
Number of successful extensions: 5529
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5275
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008086
(1014 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029196.1| DNA methyltransferase 1-associated protein 1... 440 e-123
Alignment gi|NP_001029195.1| DNA methyltransferase 1-associated protein 1... 440 e-123
Alignment gi|NP_061973.1| DNA methyltransferase 1-associated protein 1 [H... 440 e-123
>ref|NP_001029196.1| DNA methyltransferase 1-associated protein 1 [Homo sapiens].
Length = 467
Score = 440 bits (1131), Expect = e-123
Identities = 214/234 (91%), Positives = 214/234 (91%)
Frame = +2
Query: 311 MATGADVRDILELGGPEGDAASGTXXXXXXXXXXXXXXXXXXETLTFKRPEGMHREVYAL 490
MATGADVRDILELGGPEGDAASGT ETLTFKRPEGMHREVYAL
Sbjct: 1 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL 60
Query: 491 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 670
LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
Sbjct: 61 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 120
Query: 671 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 850
GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
Sbjct: 121 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 180
Query: 851 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPGVDAGHERRRKEQLERLY 1012
QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP DAGHERRRKEQLERLY
Sbjct: 181 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLY 234
>ref|NP_001029195.1| DNA methyltransferase 1-associated protein 1 [Homo sapiens].
Length = 467
Score = 440 bits (1131), Expect = e-123
Identities = 214/234 (91%), Positives = 214/234 (91%)
Frame = +2
Query: 311 MATGADVRDILELGGPEGDAASGTXXXXXXXXXXXXXXXXXXETLTFKRPEGMHREVYAL 490
MATGADVRDILELGGPEGDAASGT ETLTFKRPEGMHREVYAL
Sbjct: 1 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL 60
Query: 491 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 670
LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
Sbjct: 61 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 120
Query: 671 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 850
GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
Sbjct: 121 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 180
Query: 851 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPGVDAGHERRRKEQLERLY 1012
QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP DAGHERRRKEQLERLY
Sbjct: 181 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLY 234
>ref|NP_061973.1| DNA methyltransferase 1-associated protein 1 [Homo sapiens].
Length = 467
Score = 440 bits (1131), Expect = e-123
Identities = 214/234 (91%), Positives = 214/234 (91%)
Frame = +2
Query: 311 MATGADVRDILELGGPEGDAASGTXXXXXXXXXXXXXXXXXXETLTFKRPEGMHREVYAL 490
MATGADVRDILELGGPEGDAASGT ETLTFKRPEGMHREVYAL
Sbjct: 1 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL 60
Query: 491 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 670
LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
Sbjct: 61 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE 120
Query: 671 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 850
GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
Sbjct: 121 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH 180
Query: 851 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPGVDAGHERRRKEQLERLY 1012
QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIP DAGHERRRKEQLERLY
Sbjct: 181 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLY 234
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,656,760
Number of extensions: 1167208
Number of successful extensions: 7428
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7107
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008086
(1014 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896382.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 389 e-105
>gb|GL896382.1| Sus scrofa unplaced genomic scaffold chrU_scaffold728
Length = 36100
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 508 ggatgctcccccactgctccccagtgacactggtcaaggctaccgcacggtgaaggccaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7633 ggatgctcccccactgctccccagtgacactggtcaaggctaccgcacggtgaaggccaa 7574
Query: 568 gttgggctccaagaaggtgcggccctggaagtggatgccattcaccaaccctgcccgcaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7573 gttgggctccaagaaggtgcggccctggaagtggatgccattcaccaaccctgcccgcaa 7514
Query: 628 ggacggagccatgttcttccactggcgacgagcagctgaggagggcaaggactacccctt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7513 ggacggagccatgttcttccactggcgacgagcagctgaggagggcaaggactacccctt 7454
Query: 688 cgccaggttcaacaag 703
||||||||||||||||
Sbjct: 7453 cgccaggttcaacaag 7438
Score = 347 bits (175), Expect = 7e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 241 gatctgagccgggtccctcctctggcgctgacccttggcttcggaaccgcgcccccatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8822 gatctgagccgggtccctcctctggcgctgacccttggcttcggaaccgcgcccccatct 8763
Query: 301 ctcaggcgcgatggctacgggcgcagatgtgagggacattctagaactcgggggtccaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8762 ctcaggcgcgatggctacgggcgcagatgtgagggacattctagaactcgggggtccaga 8703
Query: 361 gggggatgcagcctccgggaccatcagcaagaaggacattatcaatccggacaag 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8702 gggggatgcagcctccgggaccatcagcaagaaggacattatcaatccggacaag 8648
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 702 agacggtgcaggtgcccgtgtactcagagcaggagtaccagctctaccttcacgacgacg 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 agacggtgcaggtgcccgtgtactcagagcaggagtaccagctctaccttcacgacgacg 1644
Query: 762 cctggacgaaggcggaaaccgaccacctcttcgacctcagccgccgcttcgacctacgct 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 cctggacgaaggcggaaaccgaccacctcttcgacctcagccgccgcttcgacctacgct 1584
Query: 822 ttgtcgtcatccatgaccggtacgaccaccagcagttcaag 862
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1583 ttgtcgtcatccatgaccggtacgaccaccagcagttcaag 1543
Score = 172 bits (87), Expect = 2e-40
Identities = 93/95 (97%)
Strand = Plus / Minus
Query: 414 agaaaaagtccaagaaatcctcggagacactgaccttcaagaggccagagggcatgcacc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7985 agaaaaagtccaagaaatcctcggagacactgaccttcaagaggccagagggcatgcacc 7926
Query: 474 gggaagtctatgcactgctgtactctgacaagaag 508
|||| |||| |||||||||||||||||||||||||
Sbjct: 7925 gggatgtctgtgcactgctgtactctgacaagaag 7891
Score = 163 bits (82), Expect = 2e-37
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 52 ggggagctgccgggccgccgctgggcactctagttgcagaggcgctagggcttaggtggc 111
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9031 ggggagcggccgggccgccgctgggcactctagttgcagaggcgctagggcttaggtggc 8972
Query: 112 agctggaaccgcagcgggacccaggc 137
||||||||||||||||||||||||||
Sbjct: 8971 agctggaaccgcagcgggacccaggc 8946
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 861 agaaacgctctgtggaggacctgaaggagcggtactaccacatctgt 907
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1442 agaaacgctctgtggaggacctgaaggagcggtactaccacatctgt 1396
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 976 cgagcgacggcggaaggaacagctggagcgtctctataa 1014
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 cgagcgacggcggaaggaacagctggagcgtctctataa 1257
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,481,825
Number of extensions: 81
Number of successful extensions: 81
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 7
Length of query: 1014
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 993
Effective length of database: 2,808,413,156
Effective search space: 2788754263908
Effective search space used: 2788754263908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)