Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008087
(1029 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069121.1| asparagine synthetase [glutamine-hydrolyzing... 562 e-160
>ref|NP_001069121.1| asparagine synthetase [glutamine-hydrolyzing] [Bos taurus].
Length = 561
Score = 562 bits (1449), Expect = e-160
Identities = 271/289 (93%), Positives = 274/289 (94%)
Frame = +1
Query: 163 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 342
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 60
Query: 343 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 522
PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV
Sbjct: 61 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 120
Query: 523 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 702
FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF
Sbjct: 121 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 180
Query: 703 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 882
LPGHYEVLDLKPNGKVASVE+VK+HHCRDEPLH LYD VEKLFPGFEIE VKSNLRILFD
Sbjct: 181 LPGHYEVLDLKPNGKVASVEMVKHHHCRDEPLHALYDGVEKLFPGFEIETVKSNLRILFD 240
Query: 883 NAIKKRLMTDRRIXXXXXXXXXXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
NA+KKRLMTDRRI VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 241 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIG 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,122,653
Number of extensions: 1021220
Number of successful extensions: 3885
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3856
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,273,310
Effective search space: 3425594400
Effective search space used: 3425594400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008087
(1029 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532473.2| PREDICTED: similar to asparagine synthetase [Ca... 559 e-159
>ref|XP_532473.2| PREDICTED: similar to asparagine synthetase [Canis familiaris].
Length = 561
Score = 559 bits (1440), Expect = e-159
Identities = 269/289 (93%), Positives = 273/289 (94%)
Frame = +1
Query: 163 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 342
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 60
Query: 343 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 522
PIRVKKYPYLWLCYNGEIYNHKK+QHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV
Sbjct: 61 PIRVKKYPYLWLCYNGEIYNHKKMQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 120
Query: 523 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 702
FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHS TPFLKVEPF
Sbjct: 121 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSTTPFLKVEPF 180
Query: 703 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 882
LPGHYEVLDLKPNGKVASVE+VKYHHCRDEPLH LYD+VEKLFPGFEIE VK+NLRILFD
Sbjct: 181 LPGHYEVLDLKPNGKVASVEMVKYHHCRDEPLHALYDNVEKLFPGFEIETVKNNLRILFD 240
Query: 883 NAIKKRLMTDRRIXXXXXXXXXXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
NAIKKRLMTDRRI VAATLLKQLKEA VQYPLQTFAIG
Sbjct: 241 NAIKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAHVQYPLQTFAIG 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,761,290
Number of extensions: 1049429
Number of successful extensions: 3914
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3878
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 239
Effective length of database: 15,407,560
Effective search space: 3682406840
Effective search space used: 3682406840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008087
(1029 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161112.1| asparagine synthetase [Sus scrofa]. 571 e-163
>ref|NP_001161112.1| asparagine synthetase [Sus scrofa].
Length = 561
Score = 571 bits (1471), Expect = e-163
Identities = 277/289 (95%), Positives = 277/289 (95%)
Frame = +1
Query: 163 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 342
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 60
Query: 343 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 522
PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV
Sbjct: 61 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 120
Query: 523 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 702
FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF
Sbjct: 121 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 180
Query: 703 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 882
LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD
Sbjct: 181 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 240
Query: 883 NAIKKRLMTDRRIXXXXXXXXXXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
NAIKKRLMTDRRI VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 241 NAIKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIG 289
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,132,068
Number of extensions: 651980
Number of successful extensions: 2595
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2577
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 243
Effective length of database: 8,854,232
Effective search space: 2151578376
Effective search space used: 2151578376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008087
(1029 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036185.1| asparagine synthetase [glutamine-hydrolyzing] [... 538 e-153
>ref|NP_036185.1| asparagine synthetase [glutamine-hydrolyzing] [Mus musculus].
Length = 561
Score = 538 bits (1387), Expect = e-153
Identities = 258/289 (89%), Positives = 268/289 (92%)
Frame = +1
Query: 163 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 342
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVD LFGMQ
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ 60
Query: 343 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 522
PIRV+KYPYLWLCYNGEIYNHK LQ FEFEYQT VDGEIILHLYDKGGIE+T+CMLDGV
Sbjct: 61 PIRVRKYPYLWLCYNGEIYNHKALQQRFEFEYQTNVDGEIILHLYDKGGIEKTICMLDGV 120
Query: 523 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 702
FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLV+LKHS TPFLKVEPF
Sbjct: 121 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVSLKHSTTPFLKVEPF 180
Query: 703 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 882
LPGHYEVLDLKPNGKVASVE+VKYHHC DEPLH +YDSVEKLFPGF++E VK+NLRILFD
Sbjct: 181 LPGHYEVLDLKPNGKVASVEMVKYHHCTDEPLHAIYDSVEKLFPGFDLETVKNNLRILFD 240
Query: 883 NAIKKRLMTDRRIXXXXXXXXXXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
NAIKKRLMTDRRI VAA+LLKQLKEAQVQYPLQTFAIG
Sbjct: 241 NAIKKRLMTDRRIGCLLSGGLDSSLVAASLLKQLKEAQVQYPLQTFAIG 289
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,315,751
Number of extensions: 890021
Number of successful extensions: 3335
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3313
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 241
Effective length of database: 12,553,887
Effective search space: 3025486767
Effective search space used: 3025486767
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008087
(1029 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_597680.2| asparagine synthetase [glutamine-hydrolyzing] i... 547 e-156
Alignment gi|NP_899199.2| asparagine synthetase [glutamine-hydrolyzing] i... 547 e-156
Alignment gi|NP_001664.3| asparagine synthetase [glutamine-hydrolyzing] i... 547 e-156
Alignment gi|NP_001171546.1| asparagine synthetase [glutamine-hydrolyzing... 502 e-142
Alignment gi|NP_001171548.1| asparagine synthetase [glutamine-hydrolyzing... 367 e-101
Alignment gi|NP_001171547.1| asparagine synthetase [glutamine-hydrolyzing... 367 e-101
>ref|NP_597680.2| asparagine synthetase [glutamine-hydrolyzing] isoform a [Homo
sapiens].
Length = 561
Score = 547 bits (1410), Expect = e-156
Identities = 262/289 (90%), Positives = 270/289 (93%)
Frame = +1
Query: 163 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 342
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVD LFGMQ
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ 60
Query: 343 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 522
PIRVKKYPYLWLCYNGEIYNHKK+Q HFEFEYQTKVDGEIILHLYDKGGIEQT+CMLDGV
Sbjct: 61 PIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGV 120
Query: 523 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 702
FAF+LLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLV LKHS TPFLKVEPF
Sbjct: 121 FAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPF 180
Query: 703 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 882
LPGHYEVLDLKPNGKVASVE+VKYHHCRD PLH LYD+VEKLFPGFEIE VK+NLRILF+
Sbjct: 181 LPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFN 240
Query: 883 NAIKKRLMTDRRIXXXXXXXXXXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
NA+KKRLMTDRRI VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 241 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIG 289
>ref|NP_899199.2| asparagine synthetase [glutamine-hydrolyzing] isoform a [Homo
sapiens].
Length = 561
Score = 547 bits (1410), Expect = e-156
Identities = 262/289 (90%), Positives = 270/289 (93%)
Frame = +1
Query: 163 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 342
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVD LFGMQ
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ 60
Query: 343 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 522
PIRVKKYPYLWLCYNGEIYNHKK+Q HFEFEYQTKVDGEIILHLYDKGGIEQT+CMLDGV
Sbjct: 61 PIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGV 120
Query: 523 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 702
FAF+LLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLV LKHS TPFLKVEPF
Sbjct: 121 FAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPF 180
Query: 703 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 882
LPGHYEVLDLKPNGKVASVE+VKYHHCRD PLH LYD+VEKLFPGFEIE VK+NLRILF+
Sbjct: 181 LPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFN 240
Query: 883 NAIKKRLMTDRRIXXXXXXXXXXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
NA+KKRLMTDRRI VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 241 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIG 289
>ref|NP_001664.3| asparagine synthetase [glutamine-hydrolyzing] isoform a [Homo
sapiens].
Length = 561
Score = 547 bits (1410), Expect = e-156
Identities = 262/289 (90%), Positives = 270/289 (93%)
Frame = +1
Query: 163 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQ 342
MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVD LFGMQ
Sbjct: 1 MCGIWALFGSDDCLSVQCLSAMKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQ 60
Query: 343 PIRVKKYPYLWLCYNGEIYNHKKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGV 522
PIRVKKYPYLWLCYNGEIYNHKK+Q HFEFEYQTKVDGEIILHLYDKGGIEQT+CMLDGV
Sbjct: 61 PIRVKKYPYLWLCYNGEIYNHKKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGV 120
Query: 523 FAFILLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPF 702
FAF+LLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLV LKHS TPFLKVEPF
Sbjct: 121 FAFVLLDTANKKVFLGRDTYGVRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPF 180
Query: 703 LPGHYEVLDLKPNGKVASVEIVKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFD 882
LPGHYEVLDLKPNGKVASVE+VKYHHCRD PLH LYD+VEKLFPGFEIE VK+NLRILF+
Sbjct: 181 LPGHYEVLDLKPNGKVASVEMVKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFN 240
Query: 883 NAIKKRLMTDRRIXXXXXXXXXXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
NA+KKRLMTDRRI VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 241 NAVKKRLMTDRRIGCLLSGGLDSSLVAATLLKQLKEAQVQYPLQTFAIG 289
>ref|NP_001171546.1| asparagine synthetase [glutamine-hydrolyzing] isoform b [Homo
sapiens].
Length = 540
Score = 502 bits (1292), Expect = e-142
Identities = 241/268 (89%), Positives = 249/268 (92%)
Frame = +1
Query: 226 MKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDQLFGMQPIRVKKYPYLWLCYNGEIYNH 405
MKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVD LFGMQPIRVKKYPYLWLCYNGEIYNH
Sbjct: 1 MKIAHRGPDAFRFENVNGYTNCCFGFHRLAVVDPLFGMQPIRVKKYPYLWLCYNGEIYNH 60
Query: 406 KKLQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGVFAFILLDTANKKVFLGRDTYG 585
KK+Q HFEFEYQTKVDGEIILHLYDKGGIEQT+CMLDGVFAF+LLDTANKKVFLGRDTYG
Sbjct: 61 KKMQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGVFAFVLLDTANKKVFLGRDTYG 120
Query: 586 VRPLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPFLPGHYEVLDLKPNGKVASVEI 765
VRPLFKAMTEDGFLAVCSEAKGLV LKHS TPFLKVEPFLPGHYEVLDLKPNGKVASVE+
Sbjct: 121 VRPLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPFLPGHYEVLDLKPNGKVASVEM 180
Query: 766 VKYHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFDNAIKKRLMTDRRIXXXXXXXX 945
VKYHHCRD PLH LYD+VEKLFPGFEIE VK+NLRILF+NA+KKRLMTDRRI
Sbjct: 181 VKYHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFNNAVKKRLMTDRRIGCLLSGGL 240
Query: 946 XXXXVAATLLKQLKEAQVQYPLQTFAIG 1029
VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 241 DSSLVAATLLKQLKEAQVQYPLQTFAIG 268
>ref|NP_001171548.1| asparagine synthetase [glutamine-hydrolyzing] isoform c [Homo
sapiens].
Length = 478
Score = 367 bits (942), Expect = e-101
Identities = 180/206 (87%), Positives = 188/206 (91%)
Frame = +1
Query: 412 LQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGVFAFILLDTANKKVFLGRDTYGVR 591
+Q HFEFEYQTKVDGEIILHLYDKGGIEQT+CMLDGVFAF+LLDTANKKVFLGRDTYGVR
Sbjct: 1 MQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGVFAFVLLDTANKKVFLGRDTYGVR 60
Query: 592 PLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPFLPGHYEVLDLKPNGKVASVEIVK 771
PLFKAMTEDGFLAVCSEAKGLV LKHS TPFLKVEPFLPGHYEVLDLKPNGKVASVE+VK
Sbjct: 61 PLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPFLPGHYEVLDLKPNGKVASVEMVK 120
Query: 772 YHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFDNAIKKRLMTDRRIXXXXXXXXXX 951
YHHCRD PLH LYD+VEKLFPGFEIE VK+NLRILF+NA+KKRLMTDRRI
Sbjct: 121 YHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFNNAVKKRLMTDRRIGCLLSGGLDS 180
Query: 952 XXVAATLLKQLKEAQVQYPLQTFAIG 1029
VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 181 SLVAATLLKQLKEAQVQYPLQTFAIG 206
>ref|NP_001171547.1| asparagine synthetase [glutamine-hydrolyzing] isoform c [Homo
sapiens].
Length = 478
Score = 367 bits (942), Expect = e-101
Identities = 180/206 (87%), Positives = 188/206 (91%)
Frame = +1
Query: 412 LQHHFEFEYQTKVDGEIILHLYDKGGIEQTVCMLDGVFAFILLDTANKKVFLGRDTYGVR 591
+Q HFEFEYQTKVDGEIILHLYDKGGIEQT+CMLDGVFAF+LLDTANKKVFLGRDTYGVR
Sbjct: 1 MQQHFEFEYQTKVDGEIILHLYDKGGIEQTICMLDGVFAFVLLDTANKKVFLGRDTYGVR 60
Query: 592 PLFKAMTEDGFLAVCSEAKGLVNLKHSMTPFLKVEPFLPGHYEVLDLKPNGKVASVEIVK 771
PLFKAMTEDGFLAVCSEAKGLV LKHS TPFLKVEPFLPGHYEVLDLKPNGKVASVE+VK
Sbjct: 61 PLFKAMTEDGFLAVCSEAKGLVTLKHSATPFLKVEPFLPGHYEVLDLKPNGKVASVEMVK 120
Query: 772 YHHCRDEPLHTLYDSVEKLFPGFEIEAVKSNLRILFDNAIKKRLMTDRRIXXXXXXXXXX 951
YHHCRD PLH LYD+VEKLFPGFEIE VK+NLRILF+NA+KKRLMTDRRI
Sbjct: 121 YHHCRDVPLHALYDNVEKLFPGFEIETVKNNLRILFNNAVKKRLMTDRRIGCLLSGGLDS 180
Query: 952 XXVAATLLKQLKEAQVQYPLQTFAIG 1029
VAATLLKQLKEAQVQYPLQTFAIG
Sbjct: 181 SLVAATLLKQLKEAQVQYPLQTFAIG 206
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,201,969
Number of extensions: 1042751
Number of successful extensions: 4072
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 6
Length of query: 343
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 240
Effective length of database: 14,901,872
Effective search space: 3576449280
Effective search space used: 3576449280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008087
(1029 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 537 e-150
>Sscrofa_Chr09
|| Length = 153670197
Score = 537 bits (271), Expect = e-150
Identities = 274/275 (99%)
Strand = Plus / Minus
Query: 137 cagagagcctatagctccagcccaccatgtgtggcatttgggccctctttggcagcgatg 196
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 84898646 cagagagcctatagctccagtccaccatgtgtggcatttgggccctctttggcagcgatg 84898587
Query: 197 actgcctttctgttcagtgtctgagtgctatgaagattgcacacaggggtccagatgcat 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84898586 actgcctttctgttcagtgtctgagtgctatgaagattgcacacaggggtccagatgcat 84898527
Query: 257 ttcgttttgagaatgtcaacggatataccaactgctgctttggatttcaccggttggcag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84898526 ttcgttttgagaatgtcaacggatataccaactgctgctttggatttcaccggttggcag 84898467
Query: 317 tggttgaccagctgtttggaatgcagccaattcgagtgaagaaatatccttatttgtggc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84898466 tggttgaccagctgtttggaatgcagccaattcgagtgaagaaatatccttatttgtggc 84898407
Query: 377 tctgttacaatggtgaaatctacaaccataagaag 411
|||||||||||||||||||||||||||||||||||
Sbjct: 84898406 tctgttacaatggtgaaatctacaaccataagaag 84898372
Score = 482 bits (243), Expect = e-133
Identities = 243/243 (100%)
Strand = Plus / Minus
Query: 409 aagctgcaacaccattttgaatttgaatatcagacaaaagtggatggtgagataatcctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84894278 aagctgcaacaccattttgaatttgaatatcagacaaaagtggatggtgagataatcctt 84894219
Query: 469 catctttatgacaaaggaggaattgagcaaacagtttgcatgttggatggggtgtttgcc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84894218 catctttatgacaaaggaggaattgagcaaacagtttgcatgttggatggggtgtttgcc 84894159
Query: 529 tttattttactggatactgccaataagaaagtgttcctgggcagagatacctatggagtc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84894158 tttattttactggatactgccaataagaaagtgttcctgggcagagatacctatggagtc 84894099
Query: 589 agacctttatttaaagccatgacagaagatggatttttggctgtgtgttcagaagctaaa 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84894098 agacctttatttaaagccatgacagaagatggatttttggctgtgtgttcagaagctaaa 84894039
Query: 649 ggt 651
|||
Sbjct: 84894038 ggt 84894036
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 648 aggtctcgttaacttgaagcactccatgaccccttttttaaaagtggagccttttctccc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84890044 aggtctcgttaacttgaagcactccatgaccccttttttaaaagtggagccttttctccc 84889985
Query: 708 cggacactatgaagttttggatttaaagccaaatggcaaagtcgcctcagtggaaatagt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84889984 cggacactatgaagttttggatttaaagccaaatggcaaagtcgcctcagtggaaatagt 84889925
Query: 768 aaaatatcatcactgtcgagatgagcctctgcacaccctgtatgacagcgtggaaaaact 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84889924 aaaatatcatcactgtcgagatgagcctctgcacaccctgtatgacagcgtggaaaaact 84889865
Query: 828 cttcccaggt 837
||||||||||
Sbjct: 84889864 cttcccaggt 84889855
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1 agacatgatgaaacttcccgcacgcattacaggagctaggcagctataaagtgagaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84905379 agacatgatgaaacttcccgcacgcattacaggagctaggcagctataaagtgagaggta 84905320
Query: 61 cgaggaggctgcaccttccacgccagcccgcaggccccagccccgccgtctcccgctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84905319 cgaggaggctgcaccttccacgccagcccgcaggccccagccccgccgtctcccgctcac 84905260
Query: 121 ctgccccattggagcccag 139
|||||||||||||||||||
Sbjct: 84905259 ctgccccattggagcccag 84905241
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1 agacatgatgaaacttcccgcacgcattacaggagctaggcagctataaagtgagaggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84920327 agacatgatgaaacttcccgcacgcattacaggagctaggcagctataaagtgagaggta 84920268
Query: 61 cgaggaggctgcaccttccacgccagcccgcaggccccagccccgccgtctcccgctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84920267 cgaggaggctgcaccttccacgccagcccgcaggccccagccccgccgtctcccgctcac 84920208
Query: 121 ctgccccattggagcccag 139
|||||||||||||||||||
Sbjct: 84920207 ctgccccattggagcccag 84920189
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 834 aggttttgagatagaagctgtgaagagcaacctccggatcctttttgacaatgccattaa 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84889607 aggttttgagatagaagctgtgaagagcaacctccggatcctttttgacaatgccattaa 84889548
Query: 894 gaaacgtttgatgacagacagaaggattggctgccttttatcagg 938
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84889547 gaaacgtttgatgacagacagaaggattggctgccttttatcagg 84889503
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 935 caggcggcttggattccagtttggttgctgccaccctattgaagcagctaaaagaggctc 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84889050 caggcggcttggattccagtttggttgctgccaccctattgaagcagctaaaagaggctc 84888991
Query: 995 aagtacagtaccctctgcagacatttgcgattggc 1029
|||||||||||||||||||||||||||||||||||
Sbjct: 84888990 aagtacagtaccctctgcagacatttgcgattggc 84888956
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,989,523
Number of extensions: 184
Number of successful extensions: 184
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 7
Length of query: 1029
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1008
Effective length of database: 2,808,413,156
Effective search space: 2830880461248
Effective search space used: 2830880461248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)